Citrus Sinensis ID: 010037

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLGH
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEccccccEEEccccccccccccccEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccccccccccccccccccccEEEEEEccccccEEEccccccEEEEEEcccccEEEEEEEEEEEEEcccccEEEEccccccEEEEEcccccEEEcccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEcEEEccccccEEEEEcccccccccccccccccccccEEEEEcccccEEEEccccccccccccEEEccccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEcccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccHHHccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHcccccccccccccccccccccccEEccccEEEcccEEEEEccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEccccEEEcccccEEEEcccccEEEEEccccccEEcccccccEEEEEcccccEEEEccccEEEEEcccccEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccccccccEEEEEEccccEEEEEccccccccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEccccccEEEEEEccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccEEEEEccc
Coil and Loop (DISEMBL)
magvsneeeeEQFFDTCeeisyvsdrdsdcsegcsssvEHLADSVLcysqseiwtgypqsVNERRSKFLKLMGFILDqslmnaedledesrVRTQLDvdritensgavlrtsgfgddihfsqssissklceapevlehftlkdhaacriddwgkgadlvvsdndqdEIEIESRlqesgssqsvsfdeflgtpgssssfvqplpsrqdeesrDLVDAKRKVKRGWLKKLGAMARIIDrhgsatlkpgdheltlgqrmrrvrvhpvkkqsrelsslytgqeflahegsiltmkfsldgqylasggedgtVRVWKVIEHerldgfdvqdtdpsclYFTINHlsqlipidvdkekidktkslrkssdltcvvlppkvfrllekplhefqghssevldlswskngfllsssadKTVRLWQVGIDRClrvfshnnyvtsvafnpvddnyfisgsidgKVRIWEVrrcqvvdytdIREIVSAvcycpdgkggivgtmtgncrfydikgmqifdLSTTAYLFALLGH
Flexible Loop (DISEMBL)
magvsneeeeeqFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTqldvdritensgavlrtsgfgdDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESrlqesgssqsVSFDEFLGTPGssssfvqplpsrqdeesrdlvdakrkvkrgwlkklGAMARIIdrhgsatlkpgdheltlgqrmrrvrvhpvkkqsrelsslYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHlsqlipidvdKEKIDKtkslrkssdltcvvLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSvafnpvddnyFISGsidgkvriwEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLGH
Low Complexity Region (SEG)
MAGVSNeeeeeQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLGH
Disordered region (IsUnstruct)
***************TCEEISYV**************VEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLM*******************I****GAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVV***********************************************************VKRGWLKKLGAMARIID*************************************LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID*******SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALL**
Disordered Region (DISOPRED)
**********EQFFDTCEE**************************LCYSQSEIWTGYPQSVNERRSKFLKLMGFILD************************************************************HFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPS**************KVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI*I************LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLG*
Disordered Region (DISEMBL)
*************FDTCEEISY****************EHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIE************SFDEFLGTP**********************DAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLGH
Disordered Region (DISPRO)
***********QFFDTCEEIS************CSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFIL****************RTQLDVDRITENSGAVLRTSGF*****************APEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLGH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	519	2.2.26 [Sep-21-2011]
Q6LA54	933	Uncharacterized WD repeat	yes	no	0.354	0.197	0.384	7e-40
O60136	586	Uncharacterized WD repeat	no	no	0.350	0.310	0.369	4e-37
Q9XSC3	912	WD repeat-containing prot	yes	no	0.406	0.231	0.362	8e-37
Q498F0	912	WD repeat-containing prot	N/A	no	0.406	0.231	0.370	1e-35
Q5JSH3	913	WD repeat-containing prot	yes	no	0.387	0.220	0.343	1e-34
Q6NVE8	915	WD repeat-containing prot	yes	no	0.387	0.219	0.343	1e-34
Q9R037	908	WD repeat-containing prot	yes	no	0.387	0.221	0.343	2e-34
Q03177	834	WD repeat-containing prot	yes	no	0.441	0.274	0.318	1e-31
P32330	852	2-deoxy-glucose resistant	no	no	0.410	0.25	0.299	2e-21
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.423	0.144	0.287	3e-17

>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2

 Score =  165 bits (418), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 125/221 (56%), Gaps = 37/221 (16%)

Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLI 343
           +I  MKFS DG+YLA GG+D  +R+W V+  EH R    +   +DP              
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSEHARSVASETCSSDP-------------- 363

Query: 344 PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLL 403
               +  K++               L   VF   E P+ E+ GH++++LDLSWS+N FLL
Sbjct: 364 ----NNPKLN---------------LKAPVFS--EAPIREYAGHTADILDLSWSRNNFLL 402

Query: 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
           SSS DKT RLW      CL  F H+++VTS+AF+P DD +F+SGS+D K+R+W ++   V
Sbjct: 403 SSSMDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAV 462

Query: 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504
             + ++ E+++AV + PDG   I GT  G C FYD +G++ 
Sbjct: 463 SFWNELPELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRF 503

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1

 Score =  156 bits (394), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 121/219 (55%), Gaps = 37/219 (16%)

Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC-LYFTINHLSQLIP 344
           S+   + S  G+YLA+ G+D  +RVWKVIE        +++   SC  +FT         
Sbjct: 188 SVWASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKEGPQSCGRFFT--------- 238

Query: 345 IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLS 404
                                    P  +F    +P+ E  GH++EVL +SWSKN FLL+
Sbjct: 239 -------------------------PSSIFE--PEPVLECVGHNAEVLSISWSKNDFLLT 271

Query: 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464
           SSAD+TVRLW     + L VF HN  VT VAF+P+DD YF+SGS+D K+++W + R +++
Sbjct: 272 SSADRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSILRHKIL 331

Query: 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
            +T++  +VS +C+ PDG+  +VG   G C  Y+ K +Q
Sbjct: 332 HWTELEYVVSTICFYPDGESIVVGMFYGLCAIYETKNLQ 370

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1

 Score =  155 bits (392), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 134/226 (59%), Gaps = 15/226 (6%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H G++ TMKFS  G+ LAS G+D  VR+W +      + FD  +     +    N   ++
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWAL-----KNAFDYFNN----MRMKYNTEGRV 559

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPP--KVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
            P    +E ++ +KS   +   +     P  K     ++P  +++GH++++LDLSWSKN 
Sbjct: 560 SP-SPSQESLNSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNY 618

Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
           FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+DGK+R+W +  
Sbjct: 619 FLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPD 678

Query: 461 CQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
            +V  + ++    ++++A  +C +GK  ++GT  G C FYD + ++
Sbjct: 679 KKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLK 724

Downstream effector for RAB11. May be involved in vesicle recycling.

Bos taurus (taxid: 9913)

>sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 16/227 (7%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H G++ TMKFS  G+ LAS G+D  VR+W +      + FD  +     +    N   ++
Sbjct: 512 HVGAVWTMKFSHCGRLLASAGQDNVVRIWVL-----KNAFDYFNN----MRIKYNTEGRV 562

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCV--VLPP-KVFRLLEKPLHEFQGHSSEVLDLSWSKN 399
            P    +E ++ +KS       +    V P  K     + P  +++GH++++LDLSWSKN
Sbjct: 563 SP-SPSQESLNSSKSDTDGGVFSGTDDVDPDDKNAPFRQVPFCKYKGHTADLLDLSWSKN 621

Query: 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
            FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+DGK+R+W + 
Sbjct: 622 YFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIP 681

Query: 460 RCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
             +V  + +I    ++++A  +C +GK  ++GT  G C FYD + ++
Sbjct: 682 DKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDTEHLK 728

Downstream effector for rab11. May be involved in vesicle recycling.

Xenopus laevis (taxid: 8355)

>sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1

 Score =  148 bits (373), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 127/236 (53%), Gaps = 35/236 (14%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
           H G++ TMKFS  G+ LAS G+D  VR+W +      D F+      +T+          
Sbjct: 510 HMGAVWTMKFSHCGRLLASAGQDNVVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 567

Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
                  D D        ++  DK    R                  ++P  +++GH+++
Sbjct: 568 SLSSSKSDTDTGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 609

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
           +LDLSWSKN FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+D
Sbjct: 610 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 669

Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           GK+R+W +   +V  + ++    ++++A  +C +GK  ++GT  G C FYD + ++
Sbjct: 670 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLK 725

Downstream effector for RAB11. May be involved in vesicle recycling.

Homo sapiens (taxid: 9606)

>sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 127/236 (53%), Gaps = 35/236 (14%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
           H G++ TMKFS  G+ LAS G+D  VR+W +      D F+      +T+          
Sbjct: 512 HMGAVWTMKFSHCGRLLASAGQDNIVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 569

Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
                  D D        ++  DK    R                  ++P  +++GH+++
Sbjct: 570 SLSSSKSDTDMGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 611

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
           +LDLSWSKN FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+D
Sbjct: 612 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 671

Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           GK+R+W +   +V  + ++    ++++A  +C +GK  ++GT  G C FYD + ++
Sbjct: 672 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLK 727

Downstream effector for RAB11. May be involved in vesicle recycling.

Mus musculus (taxid: 10090)

>sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1

 Score =  147 bits (372), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 127/236 (53%), Gaps = 35/236 (14%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
           H G++ TMKFS  G+ LAS G+D  VR+W +      D F+      +T+          
Sbjct: 505 HMGAVWTMKFSHCGRLLASAGQDNIVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 562

Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
                  D D        ++  DK    R                  ++P  +++GH+++
Sbjct: 563 SLSSSKSDTDMGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 604

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
           +LDLSWSKN FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+D
Sbjct: 605 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 664

Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           GK+R+W +   +V  + ++    ++++A  +C +GK  ++GT  G C FYD + ++
Sbjct: 665 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLK 720

Downstream effector for RAB11. May be involved in vesicle recycling.

Rattus norvegicus (taxid: 10116)

>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 134/264 (50%), Gaps = 35/264 (13%)

Query: 265 KKQSRELSSLYTGQEFLAHEG---------------SILTMKFSLDGQYLASGGEDGTVR 309
           +K  ++   L+  QE +A+EG               +I + KFS DG+++A+G +DG +R
Sbjct: 139 RKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGKFMATGSKDGKIR 198

Query: 310 VWKVI----EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK------IDKTKSLR 359
           +WKVI    E   LD     + +       I    Q+  ++  KEK       +K +   
Sbjct: 199 IWKVIGSPVERAELDSSAESNKEARAKSMRIKQ--QVSSLNNPKEKQFLDSATEKYEEKE 256

Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
           K  +L   V  P   RL       ++ H  +VLD++WSKN F+LS+S DKTV+LW     
Sbjct: 257 KLLNLYAPVFHPTPLRL-------YKEHVQDVLDINWSKNNFILSASMDKTVKLWHPDRK 309

Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
             L+ F H ++VT V F+P DD +FISG +D K R+W +   +V    D ++++++V   
Sbjct: 310 NSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDLITSVTLS 369

Query: 480 P-DGKGGIVGTMTGNCRFYDIKGM 502
           P +GK  I+GT  G       +G+
Sbjct: 370 PEEGKYTIIGTFNGYVHILMTRGL 393

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 24/237 (10%)

Query: 272 SSLYTGQEFLAH----EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327
           S+ Y G+  +A+    + SI    FS DG+Y+  G +DG++ +WKVI +  +   ++  +
Sbjct: 157 STTYQGEPAVANSELFKNSICCCTFSHDGKYMVIGCKDGSLHLWKVI-NSPVKRSEMGRS 215

Query: 328 DPSCLYFTINHLS---QLIPIDVDKEKI--------DKTKSLRKSSDLTCVVLPPKVFRL 376
           + S      N L     L  I      I        D+ +   K   L   V    VFR+
Sbjct: 216 EKSVSASRANSLKIQRHLASISSHNGSISSNDLKPSDQFEGPSKQLHLYAPVFYSDVFRV 275

Query: 377 LEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAF 436
                  F  H+ ++LD +WSKNGFL+++S DKT +LW       L+ F H ++VTS  F
Sbjct: 276 -------FMEHALDILDANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIF 328

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD-GKGGIVGTMTG 492
            P DD + I+G +D + R+W +   +V    D +++++++   P  G+  I+GT  G
Sbjct: 329 FPNDDRFIITGCLDHRCRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNG 385

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 90.5 bits (223), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 133/285 (46%), Gaps = 65/285 (22%)

Query: 274  LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
            LYT Q    H   +  + FS DG  LASG  D TVR+W +             +   CLY
Sbjct: 1151 LYTLQ---GHTNWVNAVAFSPDGATLASGSGDQTVRLWDI-------------SSSKCLY 1194

Query: 334  FTINHLSQLIPIDVDKE----------------KIDKTKSL----RKSSDLTCVVLPP-- 371
                H S +  +  + +                +I+ +K L      +S +  VV  P  
Sbjct: 1195 ILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDG 1254

Query: 372  ---------KVFRLLE----KPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVG 417
                     K  RL +    K LH FQGH++ V  ++++ +G +L+S S D+TVRLW++ 
Sbjct: 1255 SMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEIS 1314

Query: 418  IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--REIVS 474
              +CL  F  H ++V+SV F+P D     SGS D  VR+W +   + + YT +     V 
Sbjct: 1315 SSKCLHTFQGHTSWVSSVTFSP-DGTMLASGSDDQTVRLWSISSGECL-YTFLGHTNWVG 1372

Query: 475  AVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLGH 519
            +V + PD  G I+ + +G+      + ++++ +S+   L+ L GH
Sbjct: 1373 SVIFSPD--GAILASGSGD------QTVRLWSISSGKCLYTLQGH 1409

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
255555687	743	WD-repeat protein, putative [Ricinus com	0.932	0.651	0.598	1e-155
449452206	743	PREDICTED: uncharacterized protein LOC10	0.938	0.655	0.554	1e-138
359473960	729	PREDICTED: uncharacterized protein LOC10	0.926	0.659	0.563	1e-133
225470952	753	PREDICTED: uncharacterized protein LOC10	0.921	0.634	0.527	1e-130
225455320	731	PREDICTED: uncharacterized protein LOC10	0.928	0.659	0.520	1e-129
224053745	509	predicted protein [Populus trichocarpa]	0.551	0.561	0.783	1e-129
302143934	674	unnamed protein product [Vitis vinifera]	0.826	0.636	0.508	1e-127
356527704	745	PREDICTED: WD repeat-containing protein	0.919	0.640	0.536	1e-127
297742407	665	unnamed protein product [Vitis vinifera]	0.857	0.669	0.545	1e-126
255587633	714	WD-repeat protein, putative [Ricinus com	0.905	0.658	0.502	1e-125

>gi|255555687|ref|XP_002518879.1| WD-repeat protein, putative [Ricinus communis] gi|223541866|gb|EEF43412.1| WD-repeat protein, putative [Ricinus communis]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 299/500 (59%), Positives = 367/500 (73%), Gaps = 16/500 (3%)

Query: 3   GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVN 62
           G  +EEEEE+FFD+ EE S +SD  S+  E CSSS++    S+L  SQ E+W   P+SV 
Sbjct: 2   GNYSEEEEERFFDSREETSSMSDSGSNVYEDCSSSID-FDYSLLSESQYEVWIKSPESVY 60

Query: 63  ERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQ 122
           +RR +FLK M    DQ+ ++  D  +ES  +TQL +DR+ + +GAVLRTSG GD +  ++
Sbjct: 61  DRRDRFLKWMN--SDQNTISEGDSINESFTKTQLGIDRLMDTTGAVLRTSGLGDGLLSTE 118

Query: 123 SSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQS 182
           + +SS+  E  E LE  ++ D+  C I +   G + VV + DQD +   SRL++ GS+QS
Sbjct: 119 TPVSSQSSETQESLEDGSVDDNFVCTIRNLDDGTEFVVDELDQDGML--SRLRKVGSNQS 176

Query: 183 VSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGA---MARIIDRHG 239
           +SF+EF  T G SS  VQ   S+   E+RDL++ K+K K  WL++LG     AR++DRHG
Sbjct: 177 LSFEEFQRTIGVSS-LVQRFSSKYGGEARDLIEEKKKTKGSWLRRLGKSNHAARVVDRHG 235

Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
           +   K  D E      M+RV+VHP KK+S+ELSSLY+GQEFLAH+GSILTMKFS DGQYL
Sbjct: 236 ATAFKNNDRE------MQRVKVHPSKKRSKELSSLYSGQEFLAHDGSILTMKFSPDGQYL 289

Query: 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359
           ASGGED  VRVWKVIE +RLD F +Q  D SC+YFT+NHLS++  ++VDK K +KTK   
Sbjct: 290 ASGGEDSVVRVWKVIEDDRLDQFHIQANDTSCVYFTMNHLSEIASLNVDKMKSEKTKK-H 348

Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
            SSD TCV+ PPKVFR+LEKPLHEF GHS EVLDLSWSK  FLLSSS DKTVRLWQVG D
Sbjct: 349 ISSDSTCVIFPPKVFRVLEKPLHEFHGHSGEVLDLSWSKKRFLLSSSVDKTVRLWQVGCD 408

Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
           RCLRVFSHNNYVT V FNP+DDNYFISGSIDGKVRIWEV RC VVDYT IREIV+AVCY 
Sbjct: 409 RCLRVFSHNNYVTCVDFNPMDDNYFISGSIDGKVRIWEVIRCLVVDYTVIREIVTAVCYR 468

Query: 480 PDGKGGIVGTMTGNCRFYDI 499
           P GKGGIVGTMTGNC FYDI
Sbjct: 469 PGGKGGIVGTMTGNCLFYDI 488

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452206|ref|XP_004143851.1| PREDICTED: uncharacterized protein LOC101204856 [Cucumis sativus] gi|449501765|ref|XP_004161452.1| PREDICTED: uncharacterized LOC101204856 [Cucumis sativus]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 278/501 (55%), Positives = 353/501 (70%), Gaps = 14/501 (2%)

Query: 1   MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLAD--SVLCYSQSEIWTGYP 58
           M  V  EEE E+F+DT EEIS VSD  SDCSE CS+S     D    L Y     W    
Sbjct: 2   MDLVYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPENLRYVG---WIRNL 58

Query: 59  QSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDI 118
           +SV ERR+KF K MG  LDQ+  N ++ E +S    ++  DRI E+ G VLR SG   ++
Sbjct: 59  ESVYERRNKFFKWMGLDLDQNFDNTDEEEGDS---WKVYRDRIIEDCGTVLRLSGSEGEL 115

Query: 119 HFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESG 178
             S  +ISS   EAPE   +  ++++ AC I +   G + +V    QD +   + L+E G
Sbjct: 116 S-SSLTISSMSNEAPESSGNVAVEENHACTIRNLDNGTEFIVDSFRQDGML--NMLREVG 172

Query: 179 SSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRH 238
           S++S SFDEF    G S   VQ L  +  E++  +V+A+++ K+GWL+KLGA+A I+D +
Sbjct: 173 SNRSFSFDEFERNIGQSP-LVQQLFRKNVEKAGVIVNARKQAKKGWLRKLGAVACIVD-N 230

Query: 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
           G   +K G    +    +++VRVHP KKQS+ELSSL+ GQEF AH+GSI TMKFS+DG+Y
Sbjct: 231 GEGAMKTGVSNSSSKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSVDGRY 290

Query: 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
           LA+ GEDG VRVW+V+E  R D FD+ + DPS LYF++NHLS+L P+DV KE + KTK L
Sbjct: 291 LATAGEDGVVRVWQVLEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDVPKETLGKTK-L 349

Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
           ++SS   CV+ PPK+FR+LEKPLHEF GHS EVLDLSWSK G LLSSS DKTVRLWQ+G 
Sbjct: 350 KRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGC 409

Query: 419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478
           D CLRV+ HNNYVT V+FNP+D+N+FISGSIDGKVRIWEV  CQV+DY DIREIVSAVCY
Sbjct: 410 DTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVIDYIDIREIVSAVCY 469

Query: 479 CPDGKGGIVGTMTGNCRFYDI 499
            PDGKGGIVG+MTGNCRFY+I
Sbjct: 470 RPDGKGGIVGSMTGNCRFYNI 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473960|ref|XP_002263491.2| PREDICTED: uncharacterized protein LOC100249640 [Vitis vinifera]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 284/504 (56%), Positives = 348/504 (69%), Gaps = 23/504 (4%)

Query: 3   GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSS---VEHLADSVLCYSQSEIWTGYPQ 59
           G S+EEE ++FFDT EE S   D  SD S    SS   V+  +DS   Y    +W   PQ
Sbjct: 2   GSSSEEEGDRFFDTREEFS---DSASDGSVDFRSSNGVVDGDSDS-FGYG---LWIKNPQ 54

Query: 60  SVNERRSKFLKLMGFILDQSLMNAEDLE----DESRVRTQLDVDRITENSGAVLRTSGFG 115
           SVNERR KFLK M   +DQ+ + +E+ E    D    + +++ DR TENSGAVLR S   
Sbjct: 55  SVNERRDKFLKWMNLDMDQNRITSEESESESGDVCCDKIKIETDRATENSGAVLRNSVSE 114

Query: 116 DDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQ 175
           D +   Q S+S +     E+LE    KD+  C+I +   G + VV     + +  + R  
Sbjct: 115 DRVSSIQCSMSFR-SNGEELLEGGIRKDNLPCKIKNLDDGTEFVVDKLGGNGMHGKPR-- 171

Query: 176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARII 235
           E GS++ VS +EF  T G S   VQ    R+ EE  + VD K+KVKRGWL++LGA+A + 
Sbjct: 172 EVGSNRVVSMEEFQRTIGLSP-LVQQHLQREVEEVSNSVDMKKKVKRGWLRRLGAVACVR 230

Query: 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
           DR G A    G    T+G + RRVRVHP +K+S+ELSSLY G+EF AH G ILTMKFSLD
Sbjct: 231 DRQGEA----GSTHATVGAKTRRVRVHPYRKRSKELSSLYKGREFAAHRGPILTMKFSLD 286

Query: 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355
           G YLASGGEDG VRVWK+IE       D+QD DPS +YFT N  S+L P+DVDKEK  K 
Sbjct: 287 GHYLASGGEDGIVRVWKIIEDGSSKEVDIQDIDPSSVYFTRND-SELTPLDVDKEKRGKK 345

Query: 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQ 415
           K L++SSD TCV++PPKVFR+LE+PLHEFQGHS ++LDLSWSK G+LLSSS DKTVRLWQ
Sbjct: 346 KRLKRSSDSTCVIIPPKVFRILEEPLHEFQGHSGDILDLSWSKKGYLLSSSTDKTVRLWQ 405

Query: 416 VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475
           VG ++CLRVF HN+YVT V FNPVDDNYFISGSIDGKVRIWEV R +VVD+TDIR+IV+A
Sbjct: 406 VGQEQCLRVFYHNDYVTCVDFNPVDDNYFISGSIDGKVRIWEVHRHKVVDWTDIRDIVTA 465

Query: 476 VCYCPDGKGGIVGTMTGNCRFYDI 499
           VCY PDGKGGIVG+M GNC FYDI
Sbjct: 466 VCYRPDGKGGIVGSMVGNCCFYDI 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470952|ref|XP_002264456.1| PREDICTED: uncharacterized protein LOC100241604 [Vitis vinifera]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/497 (52%), Positives = 335/497 (67%), Gaps = 19/497 (3%)

Query: 8   EEEEQFFDTCEEISYVSDRDSDCSEGCSS---SVEHLADSVLCYSQSEIWTGYPQSVNER 64
           EEE+QFFDT E+I+ VSD  SDC E   S   + + ++ S  C    E+W   P+S+ ER
Sbjct: 7   EEEDQFFDTREDITSVSDSGSDCQENLDSEWRNTDFVSGSFGC----EVWIKNPESIRER 62

Query: 65  RSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSS 124
           R+KFLK MG  +D  +   E  E+      + ++DRITENSGAVL  S          SS
Sbjct: 63  RTKFLKWMGLGVDHVVR--EVPEELVSGELKGEIDRITENSGAVLGMS----SSDDGFSS 116

Query: 125 ISSKLCEAPEVLEHF--TLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQS 182
             S +C   +  +    +L+++  CRI     G + +V +  Q    + SRL+E GS++ 
Sbjct: 117 SQSSMCWPSDAQDFLGGSLEENLFCRIRSLDDGREFIVDELGQ--YGMLSRLREVGSNRV 174

Query: 183 VSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIID-RHGSA 241
           V+ +EF  T G S   VQ +  ++ E++ + V+A ++ +RGW ++LGA+A I +      
Sbjct: 175 VTIEEFERTLGLSP-LVQKMMRKEAEKACNPVEAAKRCRRGWWRRLGAVACIANCPIEVG 233

Query: 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301
             KP      LG + + V+V P +++S+ELS+LY GQ+F+AHEGSILTMKFS DGQYL S
Sbjct: 234 KFKPNGPYPILGTKSQTVKVRPYRRRSKELSALYMGQDFVAHEGSILTMKFSPDGQYLGS 293

Query: 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361
            GED  VRVW V E ER DGFD  D D S  YFT+NHLS+L+PI  DKEK  K K+LRKS
Sbjct: 294 AGEDRVVRVWLVTESERSDGFDAPDVDCSYAYFTVNHLSELVPIHADKEKKGKLKTLRKS 353

Query: 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC 421
            D  CV+ P KVF++LEKPLHEF GH  EVLD+SWSKN +LLSSS DKTVRLWQVG ++C
Sbjct: 354 LDAACVIFPQKVFQILEKPLHEFHGHCGEVLDISWSKNKYLLSSSVDKTVRLWQVGCNQC 413

Query: 422 LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
           L+VFSHNNYVT V FNPVDDNYFISGSIDGKVRIWE+   QVVD+TDI EIV+AVCY PD
Sbjct: 414 LKVFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWEIPGGQVVDWTDITEIVTAVCYRPD 473

Query: 482 GKGGIVGTMTGNCRFYD 498
           GKG IVG+MTGNCRFYD
Sbjct: 474 GKGVIVGSMTGNCRFYD 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455320|ref|XP_002271917.1| PREDICTED: uncharacterized protein LOC100245187 [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/501 (52%), Positives = 340/501 (67%), Gaps = 19/501 (3%)

Query: 6   NEEEEEQFFDTCEEISYVSDRDSD--CSEG--CSSSVEHLADSVLCYSQSEIWTGYPQSV 61
           NE+E+ Q+FD  +++   S  DS   C++    SS   + A     Y   ++W G P SV
Sbjct: 7   NEDEQYQYFDAHDDMDAASLSDSSSDCNDNPNSSSGFNNYASRAFQY---DVWAGSPGSV 63

Query: 62  NERRSKFLKLMGFILDQ-SLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHF 120
            ERR+KFL  MG  LD+ S  N+ D+  +S       VDR+ E+SGAVLRT GF D+   
Sbjct: 64  KERRNKFLNWMGLSLDRFSCDNSVDVCSDS---LGGGVDRVRESSGAVLRTLGFEDEFCS 120

Query: 121 SQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSS 180
           S+SS+S    E  E      L++   CRI +   GA+  V  ++  E    S  +E G  
Sbjct: 121 SRSSMSRWSNEQDES----GLQEKFVCRIGNLDVGAEFDV--DEMGEGSEVSEFREVGLD 174

Query: 181 QSVSFDEFLGTPGSS-SSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHG 239
           + V+ +E      S  SS VQ +  R+ EE+ + V A ++VK+GWL +L +M+ I+DRHG
Sbjct: 175 RLVTINECQNISDSLLSSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHG 234

Query: 240 SA-TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
               L   D     G R++RVRV   +KQ +ELS+LY GQ+  AHEGSIL+MKFS DG+Y
Sbjct: 235 EIHNLTTNDTNPIPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKY 294

Query: 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
           LAS GEDG VR+W+V+E ER +  D+ + DP C+YFT+NHLS+L P+  +KEK+ K +SL
Sbjct: 295 LASAGEDGIVRIWQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSL 354

Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
           RK+SD  CV+ PPKVFR+LEKPLHEF GHSSE+LDLSWS N +LLSSS DKTVRLW+VG 
Sbjct: 355 RKTSDSACVIFPPKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGC 414

Query: 419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478
           D CL++FSHNNYVT V FNPVDDNYFISGSIDGKVRIW +  CQVVD+TDIRE+V+AVCY
Sbjct: 415 DHCLKIFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCY 474

Query: 479 CPDGKGGIVGTMTGNCRFYDI 499
            PDG+GGIVG+MTG CRFY++
Sbjct: 475 RPDGQGGIVGSMTGTCRFYNV 495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053745|ref|XP_002297958.1| predicted protein [Populus trichocarpa] gi|222845216|gb|EEE82763.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/287 (78%), Positives = 247/287 (86%), Gaps = 1/287 (0%)

Query: 213 LVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS 272
           +V+AKRK KR WLKKLG   RIIDR G+A  KP D E T G +M RV+VHP KK ++ELS
Sbjct: 1   MVEAKRKAKRSWLKKLGLKGRIIDRQGTAASKPCDLESTTGAKMHRVKVHPSKKHTKELS 60

Query: 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL 332
           SL+TGQEFLAH+GSILTMKFSLDGQYLASGGEDG VRVWKVIE +R + FD+  TDPSCL
Sbjct: 61  SLFTGQEFLAHKGSILTMKFSLDGQYLASGGEDGVVRVWKVIEDDRSNQFDISATDPSCL 120

Query: 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           YFT+NHLS+L  +DVDK+ IDKTK L  SSD TCVV+PPKVFR+LEKPLHEFQGH+ EVL
Sbjct: 121 YFTMNHLSELASLDVDKKVIDKTKRL-GSSDSTCVVVPPKVFRVLEKPLHEFQGHNCEVL 179

Query: 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK 452
           DLSWSK  FLLSSS DKTVRLWQVG DRCLRVFSHNNYVTSV FNPVDDNYFISGSIDGK
Sbjct: 180 DLSWSKKRFLLSSSIDKTVRLWQVGCDRCLRVFSHNNYVTSVDFNPVDDNYFISGSIDGK 239

Query: 453 VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499
           VRIWEV  C+VVDYTDIREIV+A CYCP GKGG+VGTMTGNC FYDI
Sbjct: 240 VRIWEVLGCRVVDYTDIREIVTAACYCPGGKGGLVGTMTGNCLFYDI 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143934|emb|CBI23039.3| unnamed protein product [Vitis vinifera]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/496 (50%), Positives = 323/496 (65%), Gaps = 67/496 (13%)

Query: 6   NEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERR 65
           NE+E+ Q+FD  +++   S                L+DS   Y   ++W G P SV ERR
Sbjct: 8   NEDEQYQYFDAHDDMDAAS----------------LSDSTFQY---DVWAGSPGSVKERR 48

Query: 66  SKFLKLMGFILDQ-SLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSS 124
           +KFL  MG  LD+ S  N+ D+  +S       VDR+ E+SGAVLRT GF D+   S+SS
Sbjct: 49  NKFLNWMGLSLDRFSCDNSVDVCSDS---LGGGVDRVRESSGAVLRTLGFEDEFCSSRSS 105

Query: 125 ISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVS 184
           I  ++ E  EV                   G D +V+ N+   I                
Sbjct: 106 I--EVSEFREV-------------------GLDRLVTINECQNIS--------------- 129

Query: 185 FDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSA-TL 243
            D  L      SS VQ +  R+ EE+ + V A ++VK+GWL +L +M+ I+DRHG    L
Sbjct: 130 -DSLL------SSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHGEIHNL 182

Query: 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303
              D     G R++RVRV   +KQ +ELS+LY GQ+  AHEGSIL+MKFS DG+YLAS G
Sbjct: 183 TTNDTNPIPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKYLASAG 242

Query: 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363
           EDG VR+W+V+E ER +  D+ + DP C+YFT+NHLS+L P+  +KEK+ K +SLRK+SD
Sbjct: 243 EDGIVRIWQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSLRKTSD 302

Query: 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR 423
             CV+ PPKVFR+LEKPLHEF GHSSE+LDLSWS N +LLSSS DKTVRLW+VG D CL+
Sbjct: 303 SACVIFPPKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGCDHCLK 362

Query: 424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
           +FSHNNYVT V FNPVDDNYFISGSIDGKVRIW +  CQVVD+TDIRE+V+AVCY PDG+
Sbjct: 363 IFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCYRPDGQ 422

Query: 484 GGIVGTMTGNCRFYDI 499
           GGIVG+MTG CRFY++
Sbjct: 423 GGIVGSMTGTCRFYNV 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527704|ref|XP_003532448.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 267/498 (53%), Positives = 335/498 (67%), Gaps = 21/498 (4%)

Query: 7   EEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRS 66
           EEEE+QF++T EE+  VSD  SDCSE   SS  +        ++ ++W    +SV++RR 
Sbjct: 28  EEEEDQFYETREELCSVSDGGSDCSESDESSSGNNGH----VTRYQVWAQNLESVHQRRL 83

Query: 67  KFLKLMGFILDQSL-MNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSS- 124
            FL+ MG   D +  M  E+L D+        +DRIT  SGAVLRTS F  +     +S 
Sbjct: 84  NFLRWMGLESDLNYSMKGEELGDQP-----CGIDRITATSGAVLRTS-FAIEEGLPSTSN 137

Query: 125 ---ISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQ 181
              + S   EA    E+   +++ AC I +   G + +V    QD     S L+  GS+Q
Sbjct: 138 QIVLDSLSDEASGSQEN---RENLACMIRNLDDGTEYIVDKLGQDGAP--STLRVLGSNQ 192

Query: 182 SVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSA 241
            +S +EF    G SS F++    R  E +R L   KRK+KRGWL+KL ++A  +  HG  
Sbjct: 193 LISLEEFQKNIGPSS-FIRRHLQRDTENTRLLGVGKRKMKRGWLRKLDSIACFVHNHGFD 251

Query: 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301
             K  D +      ++RVRVH  +K+ +ELSSLYT QEF AH+G ILTMKFSLDG+YLAS
Sbjct: 252 ETKCKDCDSVDRSGIQRVRVHSYRKRFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLAS 311

Query: 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361
           GGEDG VRVWKVIE ER    D+ D DPS +YF IN+ S + P+DVDKEK+ KT+ LR+S
Sbjct: 312 GGEDGMVRVWKVIEDERSSELDILDNDPSNIYFKINNFSCVAPLDVDKEKLVKTEKLRRS 371

Query: 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC 421
           S+ TCV++PPK FR+  KPLHEFQGHSS+++DL+WSK GFLLSSS DKTVRLW VGIDRC
Sbjct: 372 SEATCVIVPPKTFRISAKPLHEFQGHSSDIIDLAWSKRGFLLSSSVDKTVRLWHVGIDRC 431

Query: 422 LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
           LRVF HNNYVT V FNPV+DN+FISGSIDGKVRIWEV  C+V DY DIREIV+AVC+ PD
Sbjct: 432 LRVFYHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVHCRVSDYIDIREIVTAVCFRPD 491

Query: 482 GKGGIVGTMTGNCRFYDI 499
           GKG IVGTM GNCRFYDI
Sbjct: 492 GKGTIVGTMAGNCRFYDI 509

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742407|emb|CBI34556.3| unnamed protein product [Vitis vinifera]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 275/504 (54%), Positives = 333/504 (66%), Gaps = 59/504 (11%)

Query: 3   GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSS---VEHLADSVLCYSQSEIWTGYPQ 59
           G S+EEE ++FFDT EE S   D  SD S    SS   V+  +DS   Y    +W   PQ
Sbjct: 2   GSSSEEEGDRFFDTREEFS---DSASDGSVDFRSSNGVVDGDSDS-FGYG---LWIKNPQ 54

Query: 60  SVNERRSKFLKLMGFILDQSLMNAEDLE----DESRVRTQLDVDRITENSGAVLRTSGFG 115
           SVNERR KFLK M   +DQ+ + +E+ E    D    + +++ DR TENSGAVLR S   
Sbjct: 55  SVNERRDKFLKWMNLDMDQNRITSEESESESGDVCCDKIKIETDRATENSGAVLRNSVSE 114

Query: 116 DDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQ 175
           D +   Q S+S +                          G +L               L+
Sbjct: 115 DRVSSIQCSMSFR------------------------SNGEEL---------------LE 135

Query: 176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARII 235
             GS++ VS +EF  T G  S  VQ    R+ EE  + VD K+KVKRGWL++LGA+A + 
Sbjct: 136 GVGSNRVVSMEEFQRTIG-LSPLVQQHLQREVEEVSNSVDMKKKVKRGWLRRLGAVACVR 194

Query: 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
           DR G A    G    T+G + RRVRVHP +K+S+ELSSLY G+EF AH G ILTMKFSLD
Sbjct: 195 DRQGEA----GSTHATVGAKTRRVRVHPYRKRSKELSSLYKGREFAAHRGPILTMKFSLD 250

Query: 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355
           G YLASGGEDG VRVWK+IE       D+QD DPS +YFT N  S+L P+DVDKEK  K 
Sbjct: 251 GHYLASGGEDGIVRVWKIIEDGSSKEVDIQDIDPSSVYFTRND-SELTPLDVDKEKRGKK 309

Query: 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQ 415
           K L++SSD TCV++PPKVFR+LE+PLHEFQGHS ++LDLSWSK G+LLSSS DKTVRLWQ
Sbjct: 310 KRLKRSSDSTCVIIPPKVFRILEEPLHEFQGHSGDILDLSWSKKGYLLSSSTDKTVRLWQ 369

Query: 416 VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475
           VG ++CLRVF HN+YVT V FNPVDDNYFISGSIDGKVRIWEV R +VVD+TDIR+IV+A
Sbjct: 370 VGQEQCLRVFYHNDYVTCVDFNPVDDNYFISGSIDGKVRIWEVHRHKVVDWTDIRDIVTA 429

Query: 476 VCYCPDGKGGIVGTMTGNCRFYDI 499
           VCY PDGKGGIVG+M GNC FYDI
Sbjct: 430 VCYRPDGKGGIVGSMVGNCCFYDI 453

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587633|ref|XP_002534336.1| WD-repeat protein, putative [Ricinus communis] gi|223525468|gb|EEF28046.1| WD-repeat protein, putative [Ricinus communis]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/494 (50%), Positives = 330/494 (66%), Gaps = 24/494 (4%)

Query: 8   EEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSK 67
           EEE  FFD  ++I+ VSD  SD     S S     +S+      E+WT  P+SV ERRS+
Sbjct: 6   EEEYHFFDAHDDIASVSDAKSDIETSDSHSCAD--NSIPSSPHFEVWTKSPRSVEERRSR 63

Query: 68  FLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISS 127
           FL  M   LDQ   N   +E  S    + ++DRI E+SGAVLR S F ++   ++S++S 
Sbjct: 64  FLNWMQVGLDQR-ANGSSIEVGS---MEGEIDRIRESSGAVLRKSIFEEEFCSTRSTMSC 119

Query: 128 -KLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFD 186
               +   +LE    K++  CR   +G G  +V +D             E  +  SV+ +
Sbjct: 120 WSNNDTSNLLEELGSKENFLCREGTYGGG--MVFND-------------EVNTEHSVTAE 164

Query: 187 EFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSA-TLKP 245
           E + T GSS SF Q    R+ +E  +L+D  R  K+ WL KL ++A ++D+   A  L+ 
Sbjct: 165 ESVNTYGSSPSF-QQFIQRETDEPSNLMDIPRTAKKKWLNKLRSIACVVDKQREAEKLRH 223

Query: 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305
            D +  L  +++RV+V    K+++ELS+LY GQ+  AHEGSI TMKFS DGQYLAS GED
Sbjct: 224 DDDDALLQYKVQRVKVRQSGKRTKELSALYKGQDIQAHEGSIRTMKFSPDGQYLASAGED 283

Query: 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365
             VR+W+V+E ER +  D+ + DPSC+YFT++HLS+L P+ +DKEK  K KSLRK+SD  
Sbjct: 284 RVVRLWRVLEDERSNELDIPEIDPSCVYFTVDHLSELKPLFIDKEKTAKLKSLRKTSDSA 343

Query: 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF 425
           CVV PPKVFR+LEKP+HEF GH  E+LDLSWSK+  LLS+S DKTVRLW+VG D CLRVF
Sbjct: 344 CVVFPPKVFRILEKPVHEFHGHKGEILDLSWSKDHHLLSASEDKTVRLWRVGSDHCLRVF 403

Query: 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485
           SH+NYVT V FNPVD+NYF+SGSIDGKVRIW +  CQVVD+TDI+EIV+AVCY PDG+GG
Sbjct: 404 SHSNYVTCVQFNPVDNNYFMSGSIDGKVRIWAIPCCQVVDWTDIKEIVTAVCYHPDGQGG 463

Query: 486 IVGTMTGNCRFYDI 499
           IVG++ GNCRFY++
Sbjct: 464 IVGSIEGNCRFYNM 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
TAIR|locus:2169769	698	AT5G24320 "AT5G24320" [Arabido	0.739	0.550	0.46	4.3e-94
TAIR|locus:2168606	654	AT5G53500 "AT5G53500" [Arabido	0.603	0.478	0.513	4.3e-92
TAIR|locus:2019494	647	AT1G64610 "AT1G64610" [Arabido	0.630	0.505	0.533	4e-90
TAIR|locus:2165700	709	AT5G42010 "AT5G42010" [Arabido	0.645	0.472	0.538	3.6e-89
TAIR|locus:2153443	825	AT5G54200 "AT5G54200" [Arabido	0.460	0.289	0.5	3.3e-72
TAIR|locus:2090146	883	AT3G15470 "AT3G15470" [Arabido	0.454	0.267	0.495	1.2e-64
TAIR|locus:2040731	903	AT2G37670 "AT2G37670" [Arabido	0.487	0.280	0.426	3.2e-60
TAIR|locus:2181733	905	AT5G02430 "AT5G02430" [Arabido	0.518	0.297	0.428	4.5e-57
TAIR|locus:2028539	593	AT1G48870 [Arabidopsis thalian	0.256	0.224	0.571	2.3e-46
MGI|MGI:1919654	915	Wdr44 "WD repeat domain 44" [M	0.406	0.230	0.362	4.8e-36

TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
 Identities = 184/400 (46%), Positives = 259/400 (64%)

Query:   104 NSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSD- 162
             N  AVL +    DD  FS S   S      E ++     + + C+ ++    + +V+ + 
Sbjct:    84 NESAVLMSLKSDDD-EFSSSRCDS--FSPSESVDRVV--NESLCK-EEGEVDSGMVLRNL 137

Query:   163 NDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKR 222
                D+ +I S L  S SS  VS D+ +   G       P+ +   EE R++    ++VK 
Sbjct:   138 GFVDDGDISSSLC-SLSSSPVS-DKIVKEHGEPKLLPDPMVA---EEEREVSGIMKRVKE 192

Query:   223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA 282
              WL +L    ++ ++  +     G      G R+ RV+V   KK+++ELS+L+ GQE  A
Sbjct:   193 KWLSRL---YKVRNKRSAGGDDNGGEVAVCGSRIERVKVKEYKKEAKELSALFKGQEIQA 249

Query:   283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
             HEG+IL MKFS DG+YLAS GEDG +RVW V+E ER +  DV   DPSC+YF ++ LS+L
Sbjct:   250 HEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERCEEHDVPKIDPSCIYFEVSKLSEL 309

Query:   343 IPIDVDKEKIDKT-KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401
              P+ V+K+ I  +  S RK+++  CV++PPK+FR+L+KPLHEF GHS ++LD+SWSKN  
Sbjct:   310 RPVAVEKDGITGSLMSPRKTTESACVIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNR 369

Query:   402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
             LLS+S D +VRLWQ+G + CL +FSHNNYVTSV FNPVDD++FISGSIDGKVRIW   +C
Sbjct:   370 LLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQC 429

Query:   462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501
             QVVD+ D R IV+AVCY PDG+  I+GT+T +CRFY++ G
Sbjct:   430 QVVDWADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNVSG 469

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)]

 Score = 863 (308.9 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
 Identities = 167/325 (51%), Positives = 234/325 (72%)

Query:   194 SSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRH--GSATLKPGDHELT 251
             SSS + Q    ++ E+ R++       K+GWL +L +M    D +      ++       
Sbjct:   135 SSSRYCQV---KETEKQRNIAGLVTSFKKGWLSRLRSMGCTADTNIESGGRMRASSG--- 188

Query:   252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311
              G  + RV+V   KKQ++ELS+LY  Q+  AH+G+IL MKFS DG++LAS GEDG VRVW
Sbjct:   189 YGDVISRVKVKHCKKQAKELSALYQSQDIKAHDGAILAMKFSNDGKFLASSGEDGIVRVW 248

Query:   312 KVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT-KSLRKSSDLTCVV 368
             KV+E +  RL    + + DPSC+YF +N LSQL P+ V++EK  KT +S RK+SD  CVV
Sbjct:   249 KVVEDKKSRLRRDCLNEIDPSCMYFEVNDLSQLKPVLVNEEKPKKTTESFRKTSDSACVV 308

Query:   369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHN 428
              PPKVFR++EKPL+EF+GH+ EVLD+SWSK+ +LLS+S DKTVRLW+VG + CL VF+HN
Sbjct:   309 FPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFAHN 368

Query:   429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
             +YVTSV FNPV++NYF+SGSIDGKVRIW +  C VVD+ D+++I+SAVCY PDG+GGI+G
Sbjct:   369 SYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGIIG 428

Query:   489 TMTGNCRFYDIKGMQIFDLSTTAYL 513
             ++ G+CRF+++ G +  +L +  +L
Sbjct:   429 SLNGSCRFFNMSG-EFLELDSQIHL 452

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 182/341 (53%), Positives = 236/341 (69%)

Query:   160 VSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK 219
             VS +D D+  + +R   S S+ ++       +   S SF     S   +  RD  D  +K
Sbjct:   106 VSSSDTDDQTLLARNDASSSTSTMPGGLSESSSSKSGSFGDFHNSPFSQ--RD--DLLKK 161

Query:   220 VKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQE 279
               + WLKKLG +  +++     +++   H++       RV+ H  KKQ +ELSS+   QE
Sbjct:   162 GAKSWLKKLGVLTHVLESMDCESVRTQLHQVA------RVQTH--KKQFKELSSMCIDQE 213

Query:   280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339
             F AH+GSIL MKFS DG+Y+AS GED  VRVW + E ER D ++V + D S +YF +N  
Sbjct:   214 FSAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYEVAEVD-SGVYFGMNQR 272

Query:   340 SQLIPIDVDKEKIDKTKS-LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
             SQ+ P+ ++ EK +K  S LRKSSD TCVVLPP +F + EKPLHEF+GH  E+LDLSWS+
Sbjct:   273 SQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTIFSISEKPLHEFKGHIGEILDLSWSE 332

Query:   399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
              G+LLSSS D+TVRLW+VG D CLR F+HNN+VT VAFNPVDDNYFISGSIDGKVRIW+V
Sbjct:   333 KGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392

Query:   459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499
              RC+VVDYTDIR+IV+AVCY PD KG ++G+MTGNCRFY I
Sbjct:   393 TRCRVVDYTDIRDIVTAVCYRPDAKGAVIGSMTGNCRFYHI 433

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 187/347 (53%), Positives = 236/347 (68%)

Query:   163 NDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSS-SFVQPLPSRQDEESRDLVDAKRKVK 221
             N    I+ +  L    SS S S  E L    SS       LP+     SR   ++ +K  
Sbjct:   141 NRAKNIDDQILLTRDYSSNSSSIAEGLSESDSSRFDSYGDLPN--SPMSR-YEESPKKGA 197

Query:   222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV-RVHPVKKQSRELSSLYTGQEF 280
             +GWLKKLG +  ++D+    T    D E T     R++ RV   KKQ +ELSSL  GQEF
Sbjct:   198 KGWLKKLGVLTHVLDKTEECT----DGESTRSSIRRQLTRVQSFKKQFKELSSLCVGQEF 253

Query:   281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHL 339
              AH+GSI+ MKFS DG+YLAS GED  VRVW +IE ER D  F+V ++D SC+YF +N  
Sbjct:   254 SAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNIIEDERRDNEFEVAESDSSCVYFGMNDK 313

Query:   340 SQLIPIDVDKEKIDKTKSL-RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
             SQ+ P+  + EKI+K++ L RK S+ TC VLP KVF + E P HEF+GH+ E+LDLSWS+
Sbjct:   314 SQIEPLKTENEKIEKSRGLLRKKSESTCAVLPSKVFSISETPQHEFRGHTGEILDLSWSE 373

Query:   399 NGFLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
              GFLLSSS D+TVRLW+VG  D C+RVFSH ++VT VAFNPVDDNYFISGSIDGKVRIW+
Sbjct:   374 KGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWD 433

Query:   458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504
             V + +VVDYTDIR+IV+A+CY PDGKG +VG+MTG CRFY     Q+
Sbjct:   434 VSQFRVVDYTDIRQIVTALCYRPDGKGAVVGSMTGECRFYHTTDNQL 480

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.3e-72, Sum P(3) = 3.3e-72
 Identities = 122/244 (50%), Positives = 163/244 (66%)

Query:   258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317
             RV+V    K  +EL++L+  QE  AH+GSI ++KFSLDG+YLAS GED  +++WKV+E E
Sbjct:   337 RVKVRQYGKSCKELTALFKSQEIQAHKGSIWSIKFSLDGRYLASAGEDCVIQIWKVVESE 396

Query:   318 R---LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374
             R   L   D Q+     L+   N   +  P+ +  ++  +T   RKS  L  V++P  VF
Sbjct:   397 RKGELLSMDKQEDGSINLFLLANGSPE--PVSMSPKRRGRTSFSRKSVSLDNVLVPEAVF 454

Query:   375 RLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
              L EKP+  F GH  +VLDLSWSK+  LLSSS DKTVRLW +    CL+VFSH++YVT +
Sbjct:   455 GLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDYVTCI 514

Query:   435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC 494
              FNPVDDNYFISGS+D KVRIW +   QVVD+ D+ E+V+A CY PDG+G +VG+  G C
Sbjct:   515 QFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGALVGSYKGTC 574

Query:   495 RFYD 498
               Y+
Sbjct:   575 CLYN 578

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 1.2e-64, Sum P(2) = 1.2e-64
 Identities = 119/240 (49%), Positives = 158/240 (65%)

Query:   258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317
             RVRV    K S+EL++LY  QE  AH GSI ++KFSLDG+YLAS GED  + +W+V+E E
Sbjct:   387 RVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAE 446

Query:   318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377
             +  G  + D  P  L    N   +  P  +   +  +T   RKS  L  + +P  +F L 
Sbjct:   447 K-KGELLLDR-PELLLLATNGSPE--PTTMSPRRRGRTSISRKSLSLENIFVPDSLFGLS 502

Query:   378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
             EKP   FQGH  +VLDL+WSK+  LLSSS DKTVRLW +    CL+VFSH++YVT + FN
Sbjct:   503 EKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFN 562

Query:   438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
             PVDD YFISGS+D KVR+W +   QVVD+ D+ E+V++ CY PDG+G +VG+  G+CR Y
Sbjct:   563 PVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMY 622

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 3.2e-60, Sum P(3) = 3.2e-60
 Identities = 113/265 (42%), Positives = 167/265 (63%)

Query:   244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303
             K  DH+   G+    V+V P  K  +ELS+L+  QE  AHEG++ T+KFS D  YLASGG
Sbjct:   366 KGKDHKH--GKANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHYLASGG 423

Query:   304 EDGTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360
              D  + VW+V E E +   +G  +    PS    + N ++      V+K+K  K  S R+
Sbjct:   424 ADRVIHVWEVQECELMSMNEG-SLTPIHPSLCDSSGNEITV-----VEKKKKGKGSSGRR 477

Query:   361 SSDLTCVV-LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
              + +   V +P  VF   +KP+   +GH   +LDLSWSK+  LLSSS DKTVRLW +   
Sbjct:   478 HNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIETK 537

Query:   420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
              CL++F+HN+YVT + F+PVD+NYF+SGS+D K+RIW ++   VV+++D+ E+V+A CY 
Sbjct:   538 TCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYT 597

Query:   480 PDGKGGIVGTMTGNCRFYDIKGMQI 504
             PDG+G ++G+  G CR YD +  ++
Sbjct:   598 PDGQGALIGSHKGICRAYDTEDCKL 622

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 4.5e-57, Sum P(2) = 4.5e-57
 Identities = 117/273 (42%), Positives = 164/273 (60%)

Query:   236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
             D  GS T  P   E    Q  + V+V    K  ++LS+L+  QE  AH+G I TMKFS D
Sbjct:   363 DSTGSGTSSPKVAEKNNEQANQWVKVRHSGKSHKDLSALHMCQEIQAHQGGIWTMKFSPD 422

Query:   296 GQYLASGGEDGTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLS-QLIPIDVDKEKI 352
                LAS GED  + VW+V E E   ++   +    PS    T          +  DK+K 
Sbjct:   423 SHLLASAGEDCAIHVWEVQECEIMSMNEGSLTPIHPSMSGSTDKSSEGDAAEVSQDKKKK 482

Query:   353 DKTKSLRKSSDLTCVVLPPK-VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTV 411
              KT   +K + +   V  P+ VF L +KP+  F GH  +VLDLSWS++  LLSSS DKTV
Sbjct:   483 GKTSMSKKGNQIPDYVHAPETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTV 542

Query:   412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471
             RLW +    CL++F+HN+YVT V FNP+D++YFISGS+D K+RIW +   QVV++ D++E
Sbjct:   543 RLWDIETQSCLKLFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKE 602

Query:   472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504
             +V+AVCY PDG+   VG++ G+CR Y  +  ++
Sbjct:   603 MVTAVCYTPDGQAAFVGSINGHCRLYSAEDCKL 635

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 76/133 (57%), Positives = 96/133 (72%)

Query:   367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS 426
             V+ P K F + E P  E  GH+ +VLDL+WS +  LLS+S DKTVRLW+ G D+CL VF 
Sbjct:   251 VLFPQKAFHIEETPFQELYGHTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFH 310

Query:   427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486
             HNNYVT V FNPV+ N F SGSIDGK RIW +   +VV +TD+R+ +SA+ Y P+G G +
Sbjct:   311 HNNYVTCVEFNPVNKNNFASGSIDGKARIWGLSEERVVAWTDVRDSISAISYQPNGNGFV 370

Query:   487 VGTMTGNCRFYDI 499
             VG +TGNCRFY I
Sbjct:   371 VGCITGNCRFYQI 383

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

MGI|MGI:1919654 Wdr44 "WD repeat domain 44" [Mus musculus (taxid:10090)]

 Score = 380 (138.8 bits), Expect = 4.8e-36, Sum P(2) = 4.8e-36
 Identities = 82/226 (36%), Positives = 132/226 (58%)

Query:   283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
             H G++ TMKFS  G+ LAS G+D  VR+W +      + FD  +     +    N   ++
Sbjct:   512 HMGAVWTMKFSHCGRLLASAGQDNIVRIWAL-----KNAFDYFNN----MRMKYNTEGRV 562

Query:   343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPP--KVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
              P    +E +  +KS       +     P  K     ++P  +++GH++++LDLSWSKN 
Sbjct:   563 SP-SPSQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNY 621

Query:   401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+DGK+R+W +  
Sbjct:   622 FLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPD 681

Query:   461 CQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
              +V  + ++    ++++A  +C +GK  ++GT  G C FYD + ++
Sbjct:   682 KKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLK 727

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005874 "microtubule" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0030334 "regulation of cell migration" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037226001 SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (732 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	519
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	5e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (302), Expect = 2e-30
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 26/227 (11%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           +    H G +  + FS DG+ LA+G  DGT++VW +                  L     
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL-------------ETGELLRTLKG 49

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-LEKPLHEFQGHSSEVLDLSW 396
           H   +  +       D T     SSD T      +++ L   + +    GH+S V  +++
Sbjct: 50  HTGPVRDVAASA---DGTYLASGSSDKTI-----RLWDLETGECVRTLTGHTSYVSSVAF 101

Query: 397 SKNGFLL-SSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
           S +G +L SSS DKT+++W V   +CL     H ++V SVAF+P D  +  S S DG ++
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIK 160

Query: 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           +W++R  + V   T     V++V + PDG+  +  +  G  + +D+ 
Sbjct: 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  108 bits (272), Expect = 2e-26
 Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 30/212 (14%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           +    H   + ++ FS DG+ L+S   D T++VW V                 CL     
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-------------TGKCLTTLRG 133

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-LEKPLHEFQGHSSEVLDLSW 396
           H        V+        +   SS     +   K++ L   K +    GH+ EV  +++
Sbjct: 134 HTD-----WVNSVAFSPDGTFVASSSQDGTI---KLWDLRTGKCVATLTGHTGEVNSVAF 185

Query: 397 SKNGF-LLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
           S +G  LLSSS+D T++LW +   +CL     H N V SVAF+P D     SGS DG +R
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIR 244

Query: 455 IWEVRRCQVVDYTDIR---EIVSAVCYCPDGK 483
           +W++R  + V    +      V+++ + PDGK
Sbjct: 245 VWDLRTGECV--QTLSGHTNSVTSLAWSPDGK 274

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  106 bits (266), Expect = 1e-25
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 26/222 (11%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H G +  +  S DG YLASG  D T+R+W +   E +       +  S +    +   ++
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV--AFSPDGRI 107

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHSSEVLDLSWSKNG- 400
           +                 S D T      KV+ +   K L   +GH+  V  +++S +G 
Sbjct: 108 L--------------SSSSRDKTI-----KVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148

Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
           F+ SSS D T++LW +   +C+   + H   V SVAF+P D    +S S DG +++W++ 
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLS 207

Query: 460 RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
             + +         V++V + PDG     G+  G  R +D++
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 29/185 (15%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
                H   + ++ FS DG ++AS  +DGT+++W +                 C+     
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL-------------RTGKCVATLTG 175

Query: 338 HLSQL--IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDL 394
           H  ++  +    D EK+  +     SSD T      K++ L   K L   +GH + V  +
Sbjct: 176 HTGEVNSVAFSPDGEKLLSS-----SSDGTI-----KLWDLSTGKCLGTLRGHENGVNSV 225

Query: 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452
           ++S +G  L S S D T+R+W +    C++  S H N VTS+A++P D     SGS DG 
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGT 284

Query: 453 VRIWE 457
           +RIW+
Sbjct: 285 IRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 4/129 (3%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVA 435
            + L   +GH+  V D++ S +G +L S S+DKT+RLW +    C+R    H +YV+SVA
Sbjct: 41  GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100

Query: 436 FNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC 494
           F+P D     S S D  +++W+V   + +       + V++V + PDG      +  G  
Sbjct: 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159

Query: 495 RFYDIKGMQ 503
           + +D++  +
Sbjct: 160 KLWDLRTGK 168

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.7 bits (195), Expect = 6e-16
 Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 29/251 (11%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI 336
           +    H  S+ ++ FS DG+ LASG   DGT+++W +   + L          S L F+ 
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208

Query: 337 NHLSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPP--------------KVF 374
           +    +     D                +L   SD       P              +++
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW 268

Query: 375 RL--LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HN 428
            L      L    GHSS VL +++S +G  L S S+D TVRLW +   + L   +   H 
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE 328

Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
             V+S++F+P        GS DG +R+W++R  + +   +    V +V + PDG+    G
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388

Query: 489 TMTGNCRFYDI 499
           +  G  R +D+
Sbjct: 389 STDGTVRLWDL 399

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.1 bits (188), Expect = 5e-15
 Identities = 64/279 (22%), Positives = 109/279 (39%), Gaps = 33/279 (11%)

Query: 264 VKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER-LDGF 322
           +   S       +      HE SI ++ FS DG+ L SG  DGT+++W +   E+ +   
Sbjct: 45  LLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL 104

Query: 323 DVQDTDPSCLYFTINHLSQLIPI------------DVDKEKIDKTKSLRKSSDLTCVVLP 370
           +             +     I +            D+             S  +T +   
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164

Query: 371 P---------------KVFRLLE-KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVR 412
           P               K++ L   KPL    GH+  V  L++S +G   + S S+D T+R
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 413 LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-- 470
           LW +   + LR     +  + V+    D +   SGS DG +R+W++R    +  T     
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLST 509
             V +V + PDGK    G+  G  R +D++  ++    T
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 12/143 (8%)

Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN 437
                +GH+  V  +++S +G  L + S D T+++W +     LR    H   V  VA +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRF 496
             D  Y  SGS D  +R+W++   + V   T     VS+V + PDG+  +  +       
Sbjct: 61  A-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKT-- 116

Query: 497 YDIKGMQIFDLSTTAYLFALLGH 519
                ++++D+ T   L  L GH
Sbjct: 117 -----IKVWDVETGKCLTTLRGH 134

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 23/148 (15%)

Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329
           +L +         H G + ++ FS DG+ L S   DGT+++W           D+     
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW-----------DLSTGKC 211

Query: 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHS 388
                   H + +  +            L  S      +   +V+ L   + +    GH+
Sbjct: 212 LGTL--RGHENGVNSVAFSP-----DGYLLASGSEDGTI---RVWDLRTGECVQTLSGHT 261

Query: 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQ 415
           + V  L+WS +G  L S SAD T+R+W 
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 27/219 (12%)

Query: 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304
           P    L  G     +R+  ++  S  L +L        H  S+L++ FS DG+ LASG  
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS------GHSSSVLSVAFSPDGKLLASGSS 304

Query: 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364
           DGTVR+W           D++            H   +  +    +          S D 
Sbjct: 305 DGTVRLW-----------DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG--SDDG 351

Query: 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR 423
           T      +++ L      +     S VL +S+S +G ++SS S D TVRLW +     LR
Sbjct: 352 TI-----RLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 424 VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
               H + VTS+ F+P D     SGS D  +R+W+++  
Sbjct: 407 NLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW 414
            K L   +GH+  V  +++S +G  L S S D TVR+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
           +    H G + ++ FS DG  LASG +DGTVRVW 
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
           +    H G + ++ FS DG+YLASG +DGT+++W 
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW 414
           + L   +GH+  V  +++S +G +L S S D T++LW
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
             L+    H   VTSVAF+P D  Y  SGS DG +++W+
Sbjct: 3   ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
           + LR    H   VTSVAF+P D N   SGS DG VR+W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 380 PLHEFQGHSSEVLDLSW--SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436
           P+   QGH+ +V  +S+  S    L S+ AD  V +W V   + + V   H++ +TS+ +
Sbjct: 117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVV 464
           N +D +   + S D K+ I + R   +V
Sbjct: 177 N-LDGSLLCTTSKDKKLNIIDPRDGTIV 203

Length = 493

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 280 FLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINH 338
              HEG + ++ FS DG  L SGG +DGT+R+W              D        T+  
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW--------------DLRTGKPLKTLEG 369

Query: 339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
            S ++ +       D       S+D T  +            L    GH+S V  L +S 
Sbjct: 370 HSNVLSVSF---SPDGRVVSSGSTDGTVRLWDLSTG----SLLRNLDGHTSRVTSLDFSP 422

Query: 399 NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438
           +G  L S S+D T+RLW +        FS +  V +   + 
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 17/93 (18%)

Query: 380 PLHEFQGHSSEVLDLSWSK--NGFLLSSSADKTVRLWQVGID----------RCLRVFSH 427
           P+ + +GH+S +LDL ++   +  L S S D T+R+W++  +          +C+ +  H
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI-LKGH 124

Query: 428 NNYVTSVAFNPVDDNYFI--SGSIDGKVRIWEV 458
              ++ + +NP+  NY+I  S   D  V IW++
Sbjct: 125 KKKISIIDWNPM--NYYIMCSSGFDSFVNIWDI 155

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	519
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
PTZ00421	493	coronin; Provisional	99.94
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0296	399	consensus Angio-associated migratory cell protein	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
PTZ00420	568	coronin; Provisional	99.91
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.89
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.89
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.89
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.88
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.88
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.87
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.86
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.85
KOG0289	506	consensus mRNA splicing factor [General function p	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.85
KOG2096	420	consensus WD40 repeat protein [General function pr	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.85
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.84
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.83
KOG1274	933	consensus WD40 repeat protein [General function pr	99.83
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.83
KOG0643	327	consensus Translation initiation factor 3, subunit	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.82
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.82
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.82
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.82
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.81
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.81
KOG0639	705	consensus Transducin-like enhancer of split protei	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.81
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG2055	514	consensus WD40 repeat protein [General function pr	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.78
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.78
KOG1539	910	consensus WD repeat protein [General function pred	99.78
KOG1274	933	consensus WD40 repeat protein [General function pr	99.77
KOG2048	691	consensus WD40 repeat protein [General function pr	99.77
KOG1539	910	consensus WD repeat protein [General function pred	99.77
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.77
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.76
KOG0639	705	consensus Transducin-like enhancer of split protei	99.75
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.75
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.75
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.73
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.72
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.72
KOG1273	405	consensus WD40 repeat protein [General function pr	99.72
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.72
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.71
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.71
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
KOG0646	476	consensus WD40 repeat protein [General function pr	99.7
KOG0649	325	consensus WD40 repeat protein [General function pr	99.7
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.69
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.69
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.68
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.67
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.66
KOG4328	498	consensus WD40 protein [Function unknown]	99.66
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.66
KOG2055	514	consensus WD40 repeat protein [General function pr	99.65
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.65
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.64
KOG1310	758	consensus WD40 repeat protein [General function pr	99.64
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.64
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.63
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.62
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.61
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.61
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.6
KOG2048	691	consensus WD40 repeat protein [General function pr	99.6
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.6
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.6
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.59
COG2319	466	FOG: WD40 repeat [General function prediction only	99.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.53
COG2319	466	FOG: WD40 repeat [General function prediction only	99.52
KOG4227	609	consensus WD40 repeat protein [General function pr	99.52
KOG1310	758	consensus WD40 repeat protein [General function pr	99.51
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.51
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.51
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.51
KOG1188	376	consensus WD40 repeat protein [General function pr	99.51
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.51
PRK01742	429	tolB translocation protein TolB; Provisional	99.51
KOG4227	609	consensus WD40 repeat protein [General function pr	99.5
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.49
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.48
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.46
KOG1963	792	consensus WD40 repeat protein [General function pr	99.46
PRK11028	330	6-phosphogluconolactonase; Provisional	99.45
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.45
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.44
KOG1963	792	consensus WD40 repeat protein [General function pr	99.44
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.43
PRK03629	429	tolB translocation protein TolB; Provisional	99.43
PRK05137	435	tolB translocation protein TolB; Provisional	99.43
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.41
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.41
KOG0649	325	consensus WD40 repeat protein [General function pr	99.37
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.37
KOG2139	445	consensus WD40 repeat protein [General function pr	99.36
PRK05137	435	tolB translocation protein TolB; Provisional	99.35
PRK02889	427	tolB translocation protein TolB; Provisional	99.35
PRK01742	429	tolB translocation protein TolB; Provisional	99.35
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.34
PRK04922	433	tolB translocation protein TolB; Provisional	99.33
KOG2321	703	consensus WD40 repeat protein [General function pr	99.32
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.32
PRK03629	429	tolB translocation protein TolB; Provisional	99.32
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.3
PRK11028	330	6-phosphogluconolactonase; Provisional	99.3
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.28
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.27
KOG2321	703	consensus WD40 repeat protein [General function pr	99.27
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.26
PRK02889	427	tolB translocation protein TolB; Provisional	99.26
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.26
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.25
KOG1334	559	consensus WD40 repeat protein [General function pr	99.22
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.2
PRK00178	430	tolB translocation protein TolB; Provisional	99.2
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.2
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.2
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.18
PRK04792	448	tolB translocation protein TolB; Provisional	99.17
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.17
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.16
KOG1334	559	consensus WD40 repeat protein [General function pr	99.14
PRK01029	428	tolB translocation protein TolB; Provisional	99.14
KOG2139	445	consensus WD40 repeat protein [General function pr	99.13
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.11
PRK00178	430	tolB translocation protein TolB; Provisional	99.08
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.08
KOG4547	541	consensus WD40 repeat-containing protein [General	99.07
PRK04792	448	tolB translocation protein TolB; Provisional	99.07
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.05
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.04
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.01
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.0
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.98
KOG2315	566	consensus Predicted translation initiation factor	98.94
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.94
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.92
KOG2315	566	consensus Predicted translation initiation factor	98.87
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.86
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.84
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.81
KOG4547	541	consensus WD40 repeat-containing protein [General	98.78
PRK01029	428	tolB translocation protein TolB; Provisional	98.77
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.77
KOG2314	698	consensus Translation initiation factor 3, subunit	98.77
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.76
PRK04043	419	tolB translocation protein TolB; Provisional	98.76
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.75
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.73
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.68
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.67
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.67
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.62
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.59
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.57
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.56
COG4946	668	Uncharacterized protein related to the periplasmic	98.55
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.54
COG4946	668	Uncharacterized protein related to the periplasmic	98.54
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.52
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.5
KOG2695	425	consensus WD40 repeat protein [General function pr	98.46
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.46
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.45
PRK04043	419	tolB translocation protein TolB; Provisional	98.43
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.43
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.42
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.38
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.36
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.35
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.33
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.29
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.25
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.25
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.23
KOG2695	425	consensus WD40 repeat protein [General function pr	98.23
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.19
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.14
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.13
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.13
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.08
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.05
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.04
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.95
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.95
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.87
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.87
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.85
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.83
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.79
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.79
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.78
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.72
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.72
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.7
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.66
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.62
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.61
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.52
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.48
KOG2314	698	consensus Translation initiation factor 3, subunit	97.46
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.44
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.42
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.41
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.37
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.37
KOG3621	726	consensus WD40 repeat-containing protein [General	97.36
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.33
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.33
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.32
PRK02888	635	nitrous-oxide reductase; Validated	97.32
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.3
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.26
KOG3621	726	consensus WD40 repeat-containing protein [General	97.25
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.22
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.21
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.13
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.12
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.03
PRK02888	635	nitrous-oxide reductase; Validated	97.02
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.01
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.01
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.0
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.0
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.98
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.86
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.81
COG3391	381	Uncharacterized conserved protein [Function unknow	96.61
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.59
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.54
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.53
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.5
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.44
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.44
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.4
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.35
KOG2395	644	consensus Protein involved in vacuole import and d	96.31
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.28
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.27
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.14
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.89
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.78
COG3391	381	Uncharacterized conserved protein [Function unknow	95.6
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.46
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.45
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.26
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.25
PRK13616	591	lipoprotein LpqB; Provisional	95.19
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.1
KOG2444	238	consensus WD40 repeat protein [General function pr	95.1
KOG2395	644	consensus Protein involved in vacuole import and d	94.91
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.76
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.46
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.31
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.12
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.0
PHA02713	557	hypothetical protein; Provisional	93.9
PRK13616	591	lipoprotein LpqB; Provisional	93.83
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.65
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.52
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.49
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.49
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.16
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.14
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.07
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.03
KOG2444	238	consensus WD40 repeat protein [General function pr	93.02
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.94
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.81
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.78
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.41
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.39
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.98
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.93
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.84
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.53
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.47
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.28
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.97
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	90.93
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.78
PHA03098	534	kelch-like protein; Provisional	90.76
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.71
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.57
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.32
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.18
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.05
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	89.81
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.69
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.58
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	88.82
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.52
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.4
PRK13684	334	Ycf48-like protein; Provisional	87.53
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.28
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.73
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	86.66
COG5167	776	VID27 Protein involved in vacuole import and degra	86.53
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.52
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.63
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	85.15
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.02
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.6
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.44
KOG2247	615	consensus WD40 repeat-containing protein [General	83.99
KOG2377	657	consensus Uncharacterized conserved protein [Funct	83.98
PRK10115	686	protease 2; Provisional	83.8
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	82.62
COG5167	776	VID27 Protein involved in vacuole import and degra	81.3
PHA03098	534	kelch-like protein; Provisional	81.04
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	80.88
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.64
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.41

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-54  Score=441.50  Aligned_cols=452  Identities=43%  Similarity=0.744  Sum_probs=326.3

Q ss_pred             CCCCCcccccccccccccccccCCCCCCCCCCCCCCcccccccccccCCccccccCCCCChHHHHHHHHHHhccccccc-
Q 010037            1 MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQS-   79 (519)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-   79 (519)
                      |+...+||| |+|||+.|+++.                           .|+||+..|+||.|||+|||++||  |+.. 
T Consensus         1 ~~~~~~ee~-~~f~~~~~~~~~---------------------------~~~~w~~~p~sv~err~~~l~~mg--ls~~~   50 (712)
T KOG0283|consen    1 MGAPGEEEE-DRFFDASERVSP---------------------------DYDLWTSSPGSVSERRRKFLNGMG--LSSKK   50 (712)
T ss_pred             CCCcccccc-ccccccccccCc---------------------------chhhhhcCccchhHHHHHHhhhhc--ccccc
Confidence            566666444 999999999961                           099999999999999999999999  6753 


Q ss_pred             cccccCC-CcccccccccccccccccCCceeccCCCCCCcccccCCCCcccCCCccccccccccCCcceeeeecCCCcee
Q 010037           80 LMNAEDL-EDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADL  158 (519)
Q Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~  158 (519)
                      ......+ ..........++.        .+.-.+-++...+ ++.-++.++ -..      ......+..  ++.|.++
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~-~~~~~~~~s-~~~------~~~~~~~~~--~~~~~e~  112 (712)
T KOG0283|consen   51 TLSRSETVDRLSSSSVESNVD--------ESNHNSVEDTDSE-QCRPSSSSS-KSR------VSQSSSSIE--LDTGDEF  112 (712)
T ss_pred             ccccccccccccccccccccc--------ccccccccccccc-cCCcccccc-ccc------cccccccee--eccccee
Confidence            2221111 1111111111110        0000011111111 110000000 000      001111111  6899999


Q ss_pred             EEccCCCchhhhhhcccccCCCcccccccccCCCCCCccccccCCcccccc-c-------cchh-----hhhhhhccccc
Q 010037          159 VVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEE-S-------RDLV-----DAKRKVKRGWL  225 (519)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~-~-------~~~~-----~~~~~~~~~w~  225 (519)
                      ++.+...++++++  +.+++++..+++++|+...+.++. +.++++++..+ .       ....     ...++....|+
T Consensus       113 ~v~e~~~~~~~~~--~sd~~~~~~~~~e~~e~~~g~~~~-v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l  189 (712)
T KOG0283|consen  113 SVSENPEDGSVNR--LSDVGTGASSTLEELESSPGESSR-VKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWL  189 (712)
T ss_pred             eEeeccCcccccc--ccCCCcccccccccccCCcCcccc-hhhhhhhcccccchhhcccccccccccccchhhhhhhhhh
Confidence            9999999999987  999999999999999999988888 89988866543 1       1111     11333445588


Q ss_pred             cccCCeeeEeecccc---eeecCCCCe-----E--EeeecC--------CeEEEeeCCccccccccccccceee-cCCCC
Q 010037          226 KKLGAMARIIDRHGS---ATLKPGDHE-----L--TLGQRM--------RRVRVHPVKKQSRELSSLYTGQEFL-AHEGS  286 (519)
Q Consensus       226 ~~~~~~~~~~~~~~~---~~~sp~g~~-----l--asgs~d--------g~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~  286 (519)
                      +.++.+.+..+....   -.+..+..-     +  .++..+        ..+++-...+..+++..++..|++. +|+++
T Consensus       190 ~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~ga  269 (712)
T KOG0283|consen  190 KSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGA  269 (712)
T ss_pred             hhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCc
Confidence            888777666554321   111111111     0  111111        5688888888889999999999999 99999


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccC-CceeeeeeeccCCCee
Q 010037          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-EKIDKTKSLRKSSDLT  365 (519)
Q Consensus       287 I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~  365 (519)
                      |++|+||+||+|||+||+||.|+||.+...+.   +........++.+.......+-+..... ................
T Consensus       270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~  346 (712)
T KOG0283|consen  270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP  346 (712)
T ss_pred             EEEEEeCCCCceeeecCCCceEEEEEEeccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence            99999999999999999999999999977554   3333444455555544444443333333 2222233334444555


Q ss_pred             EEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE
Q 010037          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~  445 (519)
                      +...+...+.+.++|++.+.||.+.|.+|+|+.+++|+++++|+|||||++....|+++|.|.++||||+|+|.|.+||+
T Consensus       347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFi  426 (712)
T KOG0283|consen  347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFI  426 (712)
T ss_pred             cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEe
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       446 sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +|+.||+||||++...+++.|.+....|+++||.|||++.++|+.+|.|++|++.+.++++
T Consensus       427 SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~  487 (712)
T KOG0283|consen  427 SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS  487 (712)
T ss_pred             ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence            9999999999999999999999999999999999999999999999999999999988764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-35  Score=277.10  Aligned_cols=259  Identities=21%  Similarity=0.371  Sum_probs=221.0

Q ss_pred             ccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC
Q 010037          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (519)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~  304 (519)
                      .+....+.+|...+-|+.|+|+|..|++|+.|.++++||+....       ...+.++|...|.|++|+|||+.||+|+.
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDgk~iASG~~  177 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDGKKIASGSK  177 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCcchhhcccc
Confidence            44556788899999999999999999999999999999988543       33467999999999999999999999999


Q ss_pred             CCcEEEEecccCeee-ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          305 DGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       305 Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      ||+|++||..+++++ ..+..|...+.++.|.+.+...-.           ......+.++.+.+|+...    +..+..
T Consensus       178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~-----------r~las~skDg~vrIWd~~~----~~~~~~  242 (480)
T KOG0271|consen  178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC-----------RRLASSSKDGSVRIWDTKL----GTCVRT  242 (480)
T ss_pred             CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc-----------cceecccCCCCEEEEEccC----ceEEEE
Confidence            999999999988765 567888888888888877643211           1345677889999998876    345788


Q ss_pred             eeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEE---------------------------------------
Q 010037          384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV---------------------------------------  424 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~---------------------------------------  424 (519)
                      +.+|+.+|+|+.|--+|+|++|+.|++|++|+...|.+.+.                                       
T Consensus       243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~  322 (480)
T KOG0271|consen  243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK  322 (480)
T ss_pred             eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence            99999999999999888999999999999998654321110                                       


Q ss_pred             -----------------------------------------ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037          425 -----------------------------------------FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (519)
Q Consensus       425 -----------------------------------------~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~  463 (519)
                                                               ..|..-|+.+.|+| |+.|+|+++.|..|++||-++++.
T Consensus       323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~  401 (480)
T KOG0271|consen  323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKF  401 (480)
T ss_pred             HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcch
Confidence                                                     02667799999999 999999999999999999999998


Q ss_pred             E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       464 ~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      + .+.+|-..|+.++|+.|.++|++|+.|.++++|++++.++.+
T Consensus       402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~  445 (480)
T KOG0271|consen  402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ  445 (480)
T ss_pred             hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence            8 588899999999999999999999999999999999988754

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-34  Score=270.26  Aligned_cols=260  Identities=23%  Similarity=0.356  Sum_probs=219.6

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-----CCCEEEEEe
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-----DGQYLASGG  303 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-----dg~~LaSgs  303 (519)
                      .+.++|..=|-|++|+|||+.||+|+.||.|++||.+.+...      ...|.+|...|++++|.|     ..++||+++
T Consensus       151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~------g~~l~gH~K~It~Lawep~hl~p~~r~las~s  224 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI------GRALRGHKKWITALAWEPLHLVPPCRRLASSS  224 (480)
T ss_pred             eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc------cccccCcccceeEEeecccccCCCccceeccc
Confidence            345666677778999999999999999999999998866543      346889999999999976     567999999


Q ss_pred             CCCcEEEEecccCeeeceeeccCCCCceEEEeec-------CCCCeEEeeccCC--------------------------
Q 010037          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN-------HLSQLIPIDVDKE--------------------------  350 (519)
Q Consensus       304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--------------------------  350 (519)
                      .||.|+|||+..+.++..+..|...++|+.|-..       ....+..+....+                          
T Consensus       225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt  304 (480)
T KOG0271|consen  225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT  304 (480)
T ss_pred             CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence            9999999999999999999999999999877422       1111111111110                          


Q ss_pred             --------ce--------------------eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-e
Q 010037          351 --------KI--------------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F  401 (519)
Q Consensus       351 --------~~--------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~  401 (519)
                              +.                    ..-..+.++.+.++++|++...   .+|+..+.+|..-|+.+.|+|++ +
T Consensus       305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~---kkpi~rmtgHq~lVn~V~fSPd~r~  381 (480)
T KOG0271|consen  305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS---KKPITRMTGHQALVNHVSFSPDGRY  381 (480)
T ss_pred             cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc---ccchhhhhchhhheeeEEECCCccE
Confidence                    00                    0012467788888888887653   46788899999999999999999 9


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEe
Q 010037          402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYC  479 (519)
Q Consensus       402 L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~s  479 (519)
                      +++++.|+.|++||.++|+.+.+|. |-..|+.|+|+. |.++|++|+.|.++++|++++.++. .+.+|.+.|.++.|+
T Consensus       382 IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws  460 (480)
T KOG0271|consen  382 IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS  460 (480)
T ss_pred             EEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence            9999999999999999999999998 999999999999 9999999999999999999999887 688899999999999


Q ss_pred             eCCCEEEEEecCCeEEEEE
Q 010037          480 PDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       480 pdg~~l~sgs~dg~v~iwd  498 (519)
                      |||+.+++|+.|..+++|.
T Consensus       461 pDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 PDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCCceeecCCCceEEEeec
Confidence            9999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-34  Score=275.17  Aligned_cols=243  Identities=21%  Similarity=0.324  Sum_probs=212.0

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEec
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~I~iWd~  313 (519)
                      .++..+.|+++++.||+|+.+|.++||+....       ...++|.+|+..|.++.|+|.  +..||||+.||+|++|++
T Consensus       176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             CcceeeEeecCCCeEEEeecCCceeEeecCCc-------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            34455789999999999999999999998743       344679999999999999996  668999999999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .+...+..+..|...+..+.|.+++.-                ..+++-+.+-.+|+...    ...+....||...|.+
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~----------------L~TasfD~tWRlWD~~t----k~ElL~QEGHs~~v~~  308 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKF----------------LGTASFDSTWRLWDLET----KSELLLQEGHSKGVFS  308 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCce----------------eeecccccchhhccccc----chhhHhhcccccccce
Confidence            999999999999888888888877632                23445555666666654    2345567899999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCC
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR  470 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~  470 (519)
                      ++|+|+| +++||+.|..-+|||+++++++..+. |...|.+|+|+| +|..+|||+.|++++|||++..+.+ ....|.
T Consensus       309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~  387 (459)
T KOG0272|consen  309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHS  387 (459)
T ss_pred             eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceeccccc
Confidence            9999999 99999999999999999999999996 999999999999 9999999999999999999998777 578899


Q ss_pred             CceEEEEEee-CCCEEEEEecCCeEEEEECCCCeeee
Q 010037          471 EIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       471 ~~V~~v~~sp-dg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +.|+.|+|+| .|.+|++++.|++++||...+.++.+
T Consensus       388 nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k  424 (459)
T KOG0272|consen  388 NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK  424 (459)
T ss_pred             chhhheEecccCCeEEEEcccCcceeeecCCCcccch
Confidence            9999999999 78999999999999999998876643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.4e-34  Score=272.09  Aligned_cols=244  Identities=20%  Similarity=0.344  Sum_probs=218.3

Q ss_pred             cCCeeeEeecccceeecCC--CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037          228 LGAMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~--g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D  305 (519)
                      ...+.+|...++++.|+|.  +..+|+|+.||+|++|++...       ...+.+.+|...|..++|+|+|++|+|++.|
T Consensus       210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD  282 (459)
T KOG0272|consen  210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-------TPLQDLEGHLARVSRVAFHPSGKFLGTASFD  282 (459)
T ss_pred             eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-------cchhhhhcchhhheeeeecCCCceeeecccc
Confidence            3457778888999999998  668999999999999998743       3446789999999999999999999999999


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      .+-++||+.++..+.....|...+.++.|.+++.                ...+++.+....+|+.+.    +..+..+.
T Consensus       283 ~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS----------------L~~tGGlD~~~RvWDlRt----gr~im~L~  342 (459)
T KOG0272|consen  283 STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS----------------LAATGGLDSLGRVWDLRT----GRCIMFLA  342 (459)
T ss_pred             cchhhcccccchhhHhhcccccccceeEecCCCc----------------eeeccCccchhheeeccc----CcEEEEec
Confidence            9999999999998888888888888888877652                224566677777888876    45688899


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~  463 (519)
                      +|..+|.+++|+|+| .|+||+.|++++|||++..+++.++. |.+-|+.|.|.|..|.+|+|++.|++++||..++.++
T Consensus       343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~  422 (459)
T KOG0272|consen  343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP  422 (459)
T ss_pred             ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence            999999999999999 99999999999999999999988886 9999999999998899999999999999999999998


Q ss_pred             E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       464 ~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      + .+.+|.+.|.++.++||++.+++++.|.+|++|.
T Consensus       423 ~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  423 LKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             chhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            8 5899999999999999999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.6e-33  Score=284.62  Aligned_cols=246  Identities=27%  Similarity=0.419  Sum_probs=216.2

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccc-------cccc-----------------cccccceeecCCCCEEEE
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-------RELS-----------------SLYTGQEFLAHEGSILTM  290 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~-------~~~~-----------------~~~~~~~l~~H~~~I~~l  290 (519)
                      ...+.|..|++++.+||.|..|-.|++|.+...+       ..+.                 ......++.+|.++|..+
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            3455678999999999999999999999998422       0111                 111224588999999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeC
Q 010037          291 KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP  370 (519)
Q Consensus       291 ~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  370 (519)
                      .|+|+.++|+++++|++||+|.+.+..++..+..|..++..+.|.+.+                ....+++.+.+..+|.
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G----------------yYFatas~D~tArLWs  521 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG----------------YYFATASHDQTARLWS  521 (707)
T ss_pred             eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc----------------eEEEecCCCceeeeee
Confidence            999999999999999999999999999999999888888888877553                3345567777777887


Q ss_pred             CccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe
Q 010037          371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS  448 (519)
Q Consensus       371 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs  448 (519)
                      ...    .+|++.+.+|.+.|.|++|+|+. +++|||.|++||+||+.+|..++.|. |.++|++|+|+| +|.+|++|+
T Consensus       522 ~d~----~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~  596 (707)
T KOG0263|consen  522 TDH----NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGD  596 (707)
T ss_pred             ccc----CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeecc
Confidence            655    57889999999999999999999 99999999999999999999999997 999999999999 999999999


Q ss_pred             CCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          449 IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       449 ~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .||.|.|||+.++.++ .+.+|.+.|+++.|+.||..||+|+.|.+|++||+..
T Consensus       597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9999999999998877 6889999999999999999999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.1e-31  Score=256.26  Aligned_cols=252  Identities=22%  Similarity=0.397  Sum_probs=207.8

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      ..+.+++|+.+|..||+|..+|.++||+.....        ..+|..|+++|.+|+|+..|+||++++.|+++.+||..+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~  307 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT  307 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence            566789999999999999999999999986432        234678999999999999999999999999999999999


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      ++....+..+..+..-+.|..+.                 .....+.++.+.++....    ..|+.++.+|.+.|.+|.
T Consensus       308 g~~~q~f~~~s~~~lDVdW~~~~-----------------~F~ts~td~~i~V~kv~~----~~P~~t~~GH~g~V~alk  366 (524)
T KOG0273|consen  308 GTVKQQFEFHSAPALDVDWQSND-----------------EFATSSTDGCIHVCKVGE----DRPVKTFIGHHGEVNALK  366 (524)
T ss_pred             ceEEEeeeeccCCccceEEecCc-----------------eEeecCCCceEEEEEecC----CCcceeeecccCceEEEE
Confidence            99988888777653333332221                 112233343343333222    367889999999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC--------CCCEEEEEeCCCeEEEEEcCCCcEE-
Q 010037          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV--------DDNYFISGSIDGKVRIWEVRRCQVV-  464 (519)
Q Consensus       396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~--------d~~~l~sgs~Dg~V~iwd~~~~~~~-  464 (519)
                      |+|.+ +|++++.|++++||.+....+...+. |+..|..+.|+|.        .+..+++++.|++|++||+..+.++ 
T Consensus       367 ~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~  446 (524)
T KOG0273|consen  367 WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH  446 (524)
T ss_pred             ECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE
Confidence            99999 99999999999999999888887775 9999999999884        3468999999999999999999988 


Q ss_pred             eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecccc-ceeEEe
Q 010037          465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTT-AYLFAL  516 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~-~~~~~l  516 (519)
                      .+..|..+|.+++|+|+|+++|+|+.||.|.||+++++++++-... ..++.+
T Consensus       447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel  499 (524)
T KOG0273|consen  447 TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFEL  499 (524)
T ss_pred             eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEE
Confidence            5779999999999999999999999999999999999999876443 234443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=5.2e-30  Score=234.54  Aligned_cols=250  Identities=20%  Similarity=0.356  Sum_probs=213.6

Q ss_pred             cccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (519)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D  305 (519)
                      +..+.+++|..++.++.|++|.++|++++.||.+.|||.-...+.       +.+..-...|..++|+|.|+++|.||.|
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-------haipl~s~WVMtCA~sPSg~~VAcGGLd  118 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-------HAIPLPSSWVMTCAYSPSGNFVACGGLD  118 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-------eEEecCceeEEEEEECCCCCeEEecCcC
Confidence            334678899999999999999999999999999999998755543       2345567789999999999999999999


Q ss_pred             CcEEEEecccC------eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          306 GTVRVWKVIEH------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       306 g~I~iWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                      ....||++.+.      ...+.+..+.....|..|..+.                 ..++++.+.+|.+|+...    ++
T Consensus       119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-----------------~ilT~SGD~TCalWDie~----g~  177 (343)
T KOG0286|consen  119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-----------------HILTGSGDMTCALWDIET----GQ  177 (343)
T ss_pred             ceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-----------------ceEecCCCceEEEEEccc----ce
Confidence            99999999755      2334566666666666665432                 346889999999999886    45


Q ss_pred             ceeEeeccCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          380 PLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp-~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      .+..|.+|.+.|.+++++| ++ .+++|+-|++.+|||++.+.++++|. |...|++|.|.| +|.-|++|+.|++.|+|
T Consensus       178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRly  256 (343)
T KOG0286|consen  178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLY  256 (343)
T ss_pred             EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEE
Confidence            5788999999999999999 56 99999999999999999999999997 999999999999 99999999999999999


Q ss_pred             EcCCCcEEeecc---CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          457 EVRRCQVVDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       457 d~~~~~~~~~~~---~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      |++..+.+....   ...+|++++|+..|++|.+|..|.++.+||.-.++.
T Consensus       257 DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~  307 (343)
T KOG0286|consen  257 DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER  307 (343)
T ss_pred             eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce
Confidence            999987774433   345799999999999999999999999999865443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=4.7e-30  Score=233.55  Aligned_cols=247  Identities=19%  Similarity=0.326  Sum_probs=205.2

Q ss_pred             ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      ..+.+++|...+..++.+++|++.++++.|+++++||+..+.       ..+.|.+|...|.+++|++|.+.|+||+.|.
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-------~t~~f~GH~~dVlsva~s~dn~qivSGSrDk  127 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDK  127 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc-------EEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence            345677888888899999999999999999999999998543       3456899999999999999999999999999


Q ss_pred             cEEEEecccCeeeceeecc-CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          307 TVRVWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      +|++|++............ ..-+.|+.|.|+....++              +.++.+..+.+|+....++    .+.+.
T Consensus       128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I--------------vs~s~DktvKvWnl~~~~l----~~~~~  189 (315)
T KOG0279|consen  128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII--------------VSASWDKTVKVWNLRNCQL----RTTFI  189 (315)
T ss_pred             eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE--------------EEccCCceEEEEccCCcch----hhccc
Confidence            9999998655433322222 567889999988754433              4667788899998887654    56778


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      ||++.++.++++|+| ++++|+.||.+.+||++.++++..+.|...|.+++|+| +...| ....+..|+|||+.++.++
T Consensus       190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-nrywL-~~at~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-NRYWL-CAATATSIKIWDLESKAVV  267 (315)
T ss_pred             cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC-CceeE-eeccCCceEEEeccchhhh
Confidence            999999999999999 99999999999999999999999999999999999999 55444 4445667999999998877


Q ss_pred             e-----eccC-----CCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          465 D-----YTDI-----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       465 ~-----~~~~-----~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .     ..+.     .-...+++|++||+.|+.|-.|+.|++|.+.
T Consensus       268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            3     2222     2335678999999999999999999999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=9e-30  Score=231.72  Aligned_cols=254  Identities=20%  Similarity=0.305  Sum_probs=214.7

Q ss_pred             cCCeeeEeecccceeecCC-CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          228 LGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      .+.+.+|.+-|.+++..+. -..+++++.|..|.+|++......+  ....+.+.||...|..+..++||++.++++.|+
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~--G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY--GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc--CceeeeeeccceEecceEEccCCceEEeccccc
Confidence            3457778888888887777 4577889999999999998664332  234567899999999999999999999999999


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      ++++||+.+++....+..|...+.++.+.++...                .++++.+.++.+|+...     ....+...
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~q----------------ivSGSrDkTiklwnt~g-----~ck~t~~~  144 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQ----------------IVSGSRDKTIKLWNTLG-----VCKYTIHE  144 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCce----------------eecCCCcceeeeeeecc-----cEEEEEec
Confidence            9999999999999999999999999988876633                35667777777776543     33344433


Q ss_pred             c--CCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          387 H--SSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       387 h--~~~V~~l~~sp~--~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      +  ...|.|+.|+|+  . +|++++.|++|++||+++.+....+. |+++++.++++| ||.+.++|+.||.+.+||++.
T Consensus       145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC
Confidence            3  789999999998  4 99999999999999999999888875 999999999999 999999999999999999999


Q ss_pred             CcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ++.+....+...|.+++|+|+...|+.+.. ..|+|||+.++.++.
T Consensus       224 ~k~lysl~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~  268 (315)
T KOG0279|consen  224 GKNLYSLEAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVE  268 (315)
T ss_pred             CceeEeccCCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhh
Confidence            999999999999999999999877766664 459999999877653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=1.4e-28  Score=225.10  Aligned_cols=283  Identities=18%  Similarity=0.261  Sum_probs=229.6

Q ss_pred             hhhhhhcccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeecccceee
Q 010037          167 EIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATL  243 (519)
Q Consensus       167 ~~~~~~~l~~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  243 (519)
                      ||.++  |..+.|   .|.|-.++-++-+-     ||........       +.-...+.|             |...+|
T Consensus        53 GH~~K--i~~~~ws~Dsr~ivSaSqDGklI-----vWDs~TtnK~-------haipl~s~W-------------VMtCA~  105 (343)
T KOG0286|consen   53 GHLNK--IYAMDWSTDSRRIVSASQDGKLI-----VWDSFTTNKV-------HAIPLPSSW-------------VMTCAY  105 (343)
T ss_pred             ccccc--eeeeEecCCcCeEEeeccCCeEE-----EEEcccccce-------eEEecCcee-------------EEEEEE
Confidence            45555  556555   55666666665554     7765543211       111222333             223599


Q ss_pred             cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceee
Q 010037          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (519)
Q Consensus       244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~  323 (519)
                      +|.|+++|+|+-|+...||++.....+- .....+++.+|++-+.|+.|-+|+ .|+|++.|.+..+||+++++....+.
T Consensus       106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g-~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~  183 (343)
T KOG0286|consen  106 SPSGNFVACGGLDNKCSIYPLSTRDAEG-NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH  183 (343)
T ss_pred             CCCCCeEEecCcCceeEEEecccccccc-cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec
Confidence            9999999999999999999998543322 234556789999999999999865 58899999999999999999999999


Q ss_pred             ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE
Q 010037          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (519)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L  402 (519)
                      .|...+..+.+.+...+               ..+.++.+....+|+.+.    +..++.|.+|...|+.++|.|+| -+
T Consensus       184 GH~gDV~slsl~p~~~n---------------tFvSg~cD~~aklWD~R~----~~c~qtF~ghesDINsv~ffP~G~af  244 (343)
T KOG0286|consen  184 GHTGDVMSLSLSPSDGN---------------TFVSGGCDKSAKLWDVRS----GQCVQTFEGHESDINSVRFFPSGDAF  244 (343)
T ss_pred             CCcccEEEEecCCCCCC---------------eEEecccccceeeeeccC----cceeEeecccccccceEEEccCCCee
Confidence            98888888777765332               234667777888888876    45688999999999999999999 99


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEecC---CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE
Q 010037          403 LSSSADKTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY  478 (519)
Q Consensus       403 ~sgs~Dg~V~lWdl~~~~~~~~~~h---~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~  478 (519)
                      ++|+.|++.|+||++..+.+..+.|   ...|++++|+- .|++|.+|..|.++.+||.-.++.+ .+.+|.+.|+++..
T Consensus       245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~  323 (343)
T KOG0286|consen  245 ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV  323 (343)
T ss_pred             eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE
Confidence            9999999999999999999999975   45799999999 9999999999999999999888777 68899999999999


Q ss_pred             eeCCCEEEEEecCCeEEEEE
Q 010037          479 CPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       479 spdg~~l~sgs~dg~v~iwd  498 (519)
                      +|||..|++|+.|..++||.
T Consensus       324 s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  324 SPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCCCcEEEecchhHheeecC
Confidence            99999999999999999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.8e-29  Score=225.52  Aligned_cols=261  Identities=17%  Similarity=0.217  Sum_probs=219.7

Q ss_pred             ceeeeecCCCceeEEccCCCchhhhhhcccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhcc
Q 010037          146 ACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKR  222 (519)
Q Consensus       146 ~~~~~~~d~g~~~~~~~~~~~~~~~~~~l~~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~  222 (519)
                      .-+|+++-.+..|.|+....++|.++  +|.+++   |++|+.++|+.+..     +|+-..+++++...++++++++|+
T Consensus        38 ~vriw~~~~~~s~~ck~vld~~hkrs--VRsvAwsp~g~~La~aSFD~t~~-----Iw~k~~~efecv~~lEGHEnEVK~  110 (312)
T KOG0645|consen   38 AVRIWSTSSGDSWTCKTVLDDGHKRS--VRSVAWSPHGRYLASASFDATVV-----IWKKEDGEFECVATLEGHENEVKC  110 (312)
T ss_pred             eEEEEecCCCCcEEEEEeccccchhe--eeeeeecCCCcEEEEeeccceEE-----EeecCCCceeEEeeeeccccceeE
Confidence            35677777777899999999999999  999999   99999999999999     999888899998888877777665


Q ss_pred             ccccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE
Q 010037          223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG  302 (519)
Q Consensus       223 ~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg  302 (519)
                                        ++|+++|.+||++++|+.|-||.+....    .+.+...++.|+..|..+.|+|...+|+|+
T Consensus       111 ------------------Vaws~sG~~LATCSRDKSVWiWe~dedd----Efec~aVL~~HtqDVK~V~WHPt~dlL~S~  168 (312)
T KOG0645|consen  111 ------------------VAWSASGNYLATCSRDKSVWIWEIDEDD----EFECIAVLQEHTQDVKHVIWHPTEDLLFSC  168 (312)
T ss_pred             ------------------EEEcCCCCEEEEeeCCCeEEEEEecCCC----cEEEEeeeccccccccEEEEcCCcceeEEe
Confidence                              7999999999999999999999988332    344556789999999999999999999999


Q ss_pred             eCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037          303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (519)
Q Consensus       303 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (519)
                      ++|.+|++|+-..+.-                                                           -....
T Consensus       169 SYDnTIk~~~~~~ddd-----------------------------------------------------------W~c~~  189 (312)
T KOG0645|consen  169 SYDNTIKVYRDEDDDD-----------------------------------------------------------WECVQ  189 (312)
T ss_pred             ccCCeEEEEeecCCCC-----------------------------------------------------------eeEEE
Confidence            9999999998642110                                                           12356


Q ss_pred             EeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      ++.+|...|.+++|+|.| .|++++.|++|+||-..+.   -...|+..++.+.|.   ...|++++.|+.|++|.....
T Consensus       190 tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~  263 (312)
T KOG0645|consen  190 TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDS  263 (312)
T ss_pred             EecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec---ccceEeccCCCEEEEEEecCC
Confidence            788999999999999999 9999999999999986622   122388899999996   468999999999999987642


Q ss_pred             ------cEE--eeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECC
Q 010037          462 ------QVV--DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       462 ------~~~--~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~  500 (519)
                            +++  ....|...|++++|.|. .++|++|+.||.|++|.+.
T Consensus       264 ~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  264 PDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence                  111  24568889999999994 6789999999999999874

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=2.6e-28  Score=218.68  Aligned_cols=251  Identities=16%  Similarity=0.292  Sum_probs=203.4

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      ++......|+.+.+.|+++.||+++. ..|++||+...+..     ...+|.+|++.|.++.|..+|++++||++||+++
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-----Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k  108 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-----PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK  108 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-----ceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence            34444556777999999999999865 67999999865542     3457899999999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      |||++...+.+.++.. .++.++...++..                ..+.+..++.+.+|+...-.....++.+   ...
T Consensus       109 IWdlR~~~~qR~~~~~-spVn~vvlhpnQt----------------eLis~dqsg~irvWDl~~~~c~~~liPe---~~~  168 (311)
T KOG0315|consen  109 IWDLRSLSCQRNYQHN-SPVNTVVLHPNQT----------------ELISGDQSGNIRVWDLGENSCTHELIPE---DDT  168 (311)
T ss_pred             EEeccCcccchhccCC-CCcceEEecCCcc----------------eEEeecCCCcEEEEEccCCccccccCCC---CCc
Confidence            9999998777777665 5666666665542                3345667788888887654433333322   236


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe------EEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR------CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~------~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      .|.+++..|+| +|+.+...|...+|++-+.+      ++..+. |+..+..+.++| +++||++++.|.+++||+..+.
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc
Confidence            89999999999 99999999999999987653      333443 999999999999 9999999999999999999987


Q ss_pred             cEE--eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          462 QVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       462 ~~~--~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      -..  .+.+|...+..++|+.||.+|++|+.|+.+++|+++.++.+..
T Consensus       248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q  295 (311)
T KOG0315|consen  248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ  295 (311)
T ss_pred             eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence            222  5778889999999999999999999999999999999886543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.8e-28  Score=247.43  Aligned_cols=250  Identities=22%  Similarity=0.386  Sum_probs=204.1

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      ..+|.+.+.+++++|||+++|+|+.||.|+|||...       .++..+|..|+..|+.+.|+..|+.|++++.||+|+.
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence            466788899999999999999999999999999873       3455678999999999999999999999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ||+......+++..+... .......+..+.++++             ..-....+.+|+.+.    ++.+..+.||.++
T Consensus       419 wDlkRYrNfRTft~P~p~-QfscvavD~sGelV~A-------------G~~d~F~IfvWS~qT----GqllDiLsGHEgP  480 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEPI-QFSCVAVDPSGELVCA-------------GAQDSFEIFVWSVQT----GQLLDILSGHEGP  480 (893)
T ss_pred             eeecccceeeeecCCCce-eeeEEEEcCCCCEEEe-------------eccceEEEEEEEeec----CeeeehhcCCCCc
Confidence            999999988888765432 2222233333333322             223344677777766    4457789999999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe---
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---  465 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~---  465 (519)
                      |.+++|+|.+ .|+++|.|++||+||+-.. ..+.++.+...++.++|.| +|.-+++++.||.|.+||+..+..+.   
T Consensus       481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~Id  559 (893)
T KOG0291|consen  481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSID  559 (893)
T ss_pred             ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeecccc
Confidence            9999999999 9999999999999998543 5667888999999999999 99999999999999999987654331   


Q ss_pred             ------------------eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          466 ------------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       466 ------------------~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                                        ........+.++|++||..|++|+....|+||++.++-+++
T Consensus       560 grkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk  618 (893)
T KOG0291|consen  560 GRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK  618 (893)
T ss_pred             chhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence                              11233568999999999999999999999999999886554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-28  Score=230.67  Aligned_cols=250  Identities=21%  Similarity=0.332  Sum_probs=218.2

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      ++++...+..+-|+|+-..+++++.|++|++||...+..       ...++||+++|..|.|+..|++||+++.|-.+++
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L  176 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL  176 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------hhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence            556777777788999999999999999999999986554       3458999999999999999999999999999999


Q ss_pred             Eeccc-CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          311 WKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       311 Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      ||..+ .++++.+..+...+.++.+.+.+.                ..+..+.+.++..|+...    +..+.++.+|..
T Consensus       177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd----------------~ilS~srD~tik~We~~t----g~cv~t~~~h~e  236 (406)
T KOG0295|consen  177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGD----------------HILSCSRDNTIKAWECDT----GYCVKTFPGHSE  236 (406)
T ss_pred             eeHHHHHHHHHHhcCcccceeeEEEEecCC----------------eeeecccccceeEEeccc----ceeEEeccCchH
Confidence            99987 667778888888888888887751                223455566666776655    456888999999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC--------------CCCEEEEEeCCCeE
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV--------------DDNYFISGSIDGKV  453 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~--------------d~~~l~sgs~Dg~V  453 (519)
                      .|..++.+.+| ++++++.|.+|++|-+.+++|...+. |..+|-|++|.|.              .+.++.+++.|++|
T Consensus       237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI  316 (406)
T KOG0295|consen  237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI  316 (406)
T ss_pred             hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence            99999999999 99999999999999999999998886 9999999999873              23699999999999


Q ss_pred             EEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       454 ~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      ++||+.++.++ .+.+|.+.|..++|+|.|++|+++..|+++++||++++++...
T Consensus       317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~  371 (406)
T KOG0295|consen  317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT  371 (406)
T ss_pred             EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence            99999999988 7999999999999999999999999999999999999887553

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=5.1e-28  Score=226.68  Aligned_cols=258  Identities=20%  Similarity=0.367  Sum_probs=222.8

Q ss_pred             hccccc---cccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC
Q 010037          220 VKRGWL---KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG  296 (519)
Q Consensus       220 ~~~~w~---~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg  296 (519)
                      .+..|.   +..+.+.+|..=+.|+++.|.+.++++|+.|++|+|||+..+...+       ++.||...|..+++|+-.
T Consensus       133 ~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-------tltGhi~~vr~vavS~rH  205 (460)
T KOG0285|consen  133 PRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-------TLTGHIETVRGVAVSKRH  205 (460)
T ss_pred             CCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-------eecchhheeeeeeecccC
Confidence            445563   4445688899999999999999999999999999999998666443       478999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc
Q 010037          297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (519)
Q Consensus       297 ~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (519)
                      .||++++.|+.|+.||+..++.+..+..+-..+.|+...+.-                ...++++.+..+.+|+.+.   
T Consensus       206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl----------------dvl~t~grDst~RvWDiRt---  266 (460)
T KOG0285|consen  206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL----------------DVLVTGGRDSTIRVWDIRT---  266 (460)
T ss_pred             ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc----------------eeEEecCCcceEEEeeecc---
Confidence            999999999999999999999998888877766666554332                2345778888999999876   


Q ss_pred             cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                       ...++.+.||..+|..+.+.|-. .+++|+.|++|++||+..++...++. |...|.+++.+| ....||+++.| .|+
T Consensus       267 -r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik  343 (460)
T KOG0285|consen  267 -RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIK  343 (460)
T ss_pred             -cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cce
Confidence             34588999999999999999877 99999999999999999998887775 889999999999 89999999987 699


Q ss_pred             EEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       455 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      -|++..+..+ .+.+|...|++++.+.|| ++++|+.+|.+.+||.+++..+|.
T Consensus       344 ~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~  396 (460)
T KOG0285|consen  344 QWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR  396 (460)
T ss_pred             eccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence            9999998877 588899999999999988 688999999999999999876664

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=1e-28  Score=235.13  Aligned_cols=237  Identities=22%  Similarity=0.355  Sum_probs=198.3

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      ..|..+.|.|+|+.|++|+..|.+.+|+.....-+       ..+++|..+|.+|.|+++|.+++||..+|.|++|+..-
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE-------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm  169 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE-------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM  169 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCceeeHH-------HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence            34556899999999999999999999997532222       23678999999999999999999999999999999855


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      .........+...+.+++|+++..                +.++.+.++.+.+|+...    .++-..+.||.-.|.+++
T Consensus       170 nnVk~~~ahh~eaIRdlafSpnDs----------------kF~t~SdDg~ikiWdf~~----~kee~vL~GHgwdVksvd  229 (464)
T KOG0284|consen  170 NNVKIIQAHHAEAIRDLAFSPNDS----------------KFLTCSDDGTIKIWDFRM----PKEERVLRGHGWDVKSVD  229 (464)
T ss_pred             hhhHHhhHhhhhhhheeccCCCCc----------------eeEEecCCCeEEEEeccC----CchhheeccCCCCcceec
Confidence            443333333346778888877542                234567778888887654    344556799999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-EEeeccCCCc
Q 010037          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYTDIREI  472 (519)
Q Consensus       396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~~~~  472 (519)
                      |+|.. +|++++.|..|++||.+++.|+.++. |+..|..+.|+| ++++|+++|.|..++++|+++.+ +..+.+|...
T Consensus       230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd  308 (464)
T KOG0284|consen  230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD  308 (464)
T ss_pred             cCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhh
Confidence            99987 99999999999999999999999886 999999999999 88999999999999999999654 4468889999


Q ss_pred             eEEEEEeeC-CCEEEEEecCCeEEEEECC
Q 010037          473 VSAVCYCPD-GKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       473 V~~v~~spd-g~~l~sgs~dg~v~iwdl~  500 (519)
                      |++++|+|- ..+|.+|+.||.|..|.+.
T Consensus       309 v~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  309 VTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             heeeccccccccceeeccCCCceEEEecc
Confidence            999999994 4678889999999999987

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=1e-28  Score=235.00  Aligned_cols=241  Identities=19%  Similarity=0.282  Sum_probs=208.8

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecC-CCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      +..|.+.|.++.|+++|.++++|+.+|.|++|+.....        .+.+++| ...|++++|+|+...++||++||+|+
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik  205 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK  205 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence            34567888889999999999999999999999976333        2334555 48999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      |||....+....+..+.-.+.++.|.+...                ....++.+..+.+|+++.    +..+.++.+|+.
T Consensus       206 iWdf~~~kee~vL~GHgwdVksvdWHP~kg----------------LiasgskDnlVKlWDprS----g~cl~tlh~HKn  265 (464)
T KOG0284|consen  206 IWDFRMPKEERVLRGHGWDVKSVDWHPTKG----------------LIASGSKDNLVKLWDPRS----GSCLATLHGHKN  265 (464)
T ss_pred             EEeccCCchhheeccCCCCcceeccCCccc----------------eeEEccCCceeEeecCCC----cchhhhhhhccc
Confidence            999998888778888888888888776542                234566677888999987    456889999999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--e
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--D  465 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~  465 (519)
                      .|..+.|+|++ +|+|+|.|..++++|+++.+.+.++. |...|+++.|+|....+|.+|+.||.|..|.+...+.+  -
T Consensus       266 tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i  345 (464)
T KOG0284|consen  266 TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI  345 (464)
T ss_pred             eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence            99999999999 99999999999999999888888886 99999999999999999999999999999999855544  3


Q ss_pred             eccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      -.+|...|++++|+|-|..|++|+.|.++++|.-
T Consensus       346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             CcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            4578899999999999999999999999999975

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-27  Score=222.46  Aligned_cols=243  Identities=19%  Similarity=0.303  Sum_probs=206.4

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+.+|.+.+..++|+..|++||+++.|-.+++|+....      ..+.+.+.+|...|.+++|-|.|.+|++++.|.+|+
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik  218 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK  218 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHH------HHHHHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence            46778888888999999999999999999999998743      334456789999999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +|++.++-+++++..+..-+..+...  ...              ......+.+..+.+|.....    .....+..|.-
T Consensus       219 ~We~~tg~cv~t~~~h~ewvr~v~v~--~DG--------------ti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh  278 (406)
T KOG0295|consen  219 AWECDTGYCVKTFPGHSEWVRMVRVN--QDG--------------TIIASCSNDQTLRVWVVATK----QCKAELREHEH  278 (406)
T ss_pred             EEecccceeEEeccCchHhEEEEEec--CCe--------------eEEEecCCCceEEEEEeccc----hhhhhhhcccc
Confidence            99999999999998877644333322  211              22345566667777766542    23566888999


Q ss_pred             CeeEEEEcC--------------CC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCe
Q 010037          390 EVLDLSWSK--------------NG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK  452 (519)
Q Consensus       390 ~V~~l~~sp--------------~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (519)
                      +|-|++|-|              ++  ++.+++.|++|++||+.++.|+.++. |...|..++|+| .|+||+++..|++
T Consensus       279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKT  357 (406)
T ss_pred             ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCc
Confidence            999999976              22  88999999999999999999999986 999999999999 9999999999999


Q ss_pred             EEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          453 VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       453 V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      |++||+++.+++ .+..|..-|+++.|+.+-.++++|+.|..+++|.-
T Consensus       358 lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  358 LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999988 47789999999999999999999999999999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-26  Score=210.40  Aligned_cols=208  Identities=24%  Similarity=0.398  Sum_probs=175.5

Q ss_pred             cCCeeeEeecccceeecCC-CCeEEeeecCCeEEEeeCCcccccccccccccee-ecCCCCEEEEEEccCCCEEEEEeCC
Q 010037          228 LGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGED  305 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~LaSgs~D  305 (519)
                      .+.+.+|.+++-.++|+|. |..||+++.|+.|+||+......    ..+...+ .+|+..|+.++|+|.|+|||+|+.|
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD   82 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD   82 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence            3456677788888999999 89999999999999999884211    1111112 3799999999999999999999999


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      .++.||.-..++.                                                            +.+.++.
T Consensus        83 ~t~~Iw~k~~~ef------------------------------------------------------------ecv~~lE  102 (312)
T KOG0645|consen   83 ATVVIWKKEDGEF------------------------------------------------------------ECVATLE  102 (312)
T ss_pred             ceEEEeecCCCce------------------------------------------------------------eEEeeee
Confidence            9999998644331                                                            2356789


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC---eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~---~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      ||...|.|++|+++| +|+|++.|+.|-||.+..+   .+...+. |...|..+.|+| ...+|++++.|.+|++|.-..
T Consensus       103 GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~  181 (312)
T KOG0645|consen  103 GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDED  181 (312)
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecC
Confidence            999999999999999 9999999999999999754   5666665 999999999999 899999999999999998773


Q ss_pred             C---cEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          461 C---QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       461 ~---~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .   .++ .+.+|...|.+++|+|.|..|++++.|++|+||-+.
T Consensus       182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            2   334 678888899999999999999999999999999843

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.6e-26  Score=241.28  Aligned_cols=246  Identities=25%  Similarity=0.455  Sum_probs=209.0

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec-
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV-  313 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~-  313 (519)
                      ...+.++.|+|+|+.+++++.++.|++|+......     ...+++.+|...|.+++|+|++++|++|+.|++|+|||+ 
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            45566789999999999999999999999954332     233456899999999999999999999999999999999 


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      ..+.+++.+..|...+.++.|.+.. ..+               +.++.+..|.+|+.+.    ++++..+.+|...|++
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~~i---------------~Sgs~D~tvriWd~~~----~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDG-NLL---------------VSGSDDGTVRIWDVRT----GECVRKLKGHSDGISG  293 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCC-CEE---------------EEecCCCcEEEEeccC----CeEEEeeeccCCceEE
Confidence            5568889999999999888888776 333               4667888999999887    6778999999999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEec-CCC--cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-ee
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY  466 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~--~~~~~~-h~~--~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~  466 (519)
                      ++|++++ +|++++.|+.|+|||+.++.  ++..+. +..  .+++++|+| ++.++++++.|+.+++||+..+..+ .+
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee
Confidence            9999999 99999999999999999999  556664 333  699999999 9999999999999999999988776 46


Q ss_pred             ccCCCc---eEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          467 TDIREI---VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       467 ~~~~~~---V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ..|...   +.+...++.|.++++|+.|+.|++||+.++...+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~  415 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ  415 (456)
T ss_pred             cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh
Confidence            666553   4455667899999999999999999999765544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=2.2e-26  Score=211.57  Aligned_cols=259  Identities=20%  Similarity=0.293  Sum_probs=203.5

Q ss_pred             cccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (519)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D  305 (519)
                      .+...+.+|...+..+.|+|+|.++|+|+.|..|.+|++......+.      .+++|.++|..+.|.+|++.|++++.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------~lkgHsgAVM~l~~~~d~s~i~S~gtD  111 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW------VLKGHSGAVMELHGMRDGSHILSCGTD  111 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee------eeccccceeEeeeeccCCCEEEEecCC
Confidence            34445667788888899999999999999999999999765444333      467999999999999999999999999


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeee----------------------------ee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT----------------------------KS  357 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~  357 (519)
                      .+|+.||+++++++..++.+..-+..+.  +...+..........+..+.                            ..
T Consensus       112 k~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv  189 (338)
T KOG0265|consen  112 KTVRGWDAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV  189 (338)
T ss_pred             ceEEEEecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence            9999999999999988888776554443  22222222111111111111                            11


Q ss_pred             eccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC----CeEEEEec---CC-
Q 010037          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----DRCLRVFS---HN-  428 (519)
Q Consensus       358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~----~~~~~~~~---h~-  428 (519)
                      +.+.-++.+.+|+++.    ....+.+.||..+|+.|..+|+| ++++-++|.+|++||++-    .++++.+.   |. 
T Consensus       190 ~sggIdn~ikvWd~r~----~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf  265 (338)
T KOG0265|consen  190 ISGGIDNDIKVWDLRK----NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF  265 (338)
T ss_pred             eeccccCceeeecccc----CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence            3344455566666643    34578899999999999999999 999999999999999974    46677775   33 


Q ss_pred             -CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037          429 -NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (519)
Q Consensus       429 -~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw  497 (519)
                       ......+|+| +++++.+|+.|..+++||.....++ .+.+|.+.|++++|+|....|.+++.|.+|++=
T Consensus       266 eknlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  266 EKNLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             hhhcceeeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence             3456779999 9999999999999999999986666 799999999999999999999999999998763

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=3.9e-28  Score=226.57  Aligned_cols=226  Identities=22%  Similarity=0.398  Sum_probs=190.6

Q ss_pred             ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeecee
Q 010037          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF  322 (519)
Q Consensus       243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~  322 (519)
                      +--|+..+++|..|++|+|||.+       ...+...+.||++.|.|+.|.  .+.|++|+.|.+|+|||++++++++++
T Consensus       203 lQYDD~kiVSGlrDnTikiWD~n-------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl  273 (499)
T KOG0281|consen  203 LQYDDEKIVSGLRDNTIKIWDKN-------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL  273 (499)
T ss_pred             EEecchhhhcccccCceEEeccc-------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH
Confidence            44567789999999999999987       445556789999999999995  569999999999999999999999888


Q ss_pred             eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeE
Q 010037          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL  402 (519)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L  402 (519)
                      -.+...+..+.|..+                  ..++.+.+..+.+|+..... .....+.+.||...|+.+.|+.. ++
T Consensus       274 ihHceaVLhlrf~ng------------------~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd~k-yI  333 (499)
T KOG0281|consen  274 IHHCEAVLHLRFSNG------------------YMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFDDK-YI  333 (499)
T ss_pred             hhhcceeEEEEEeCC------------------EEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccccc-eE
Confidence            777666555544322                  22455666777777765433 23445678899999999999766 99


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEee
Q 010037          403 LSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCP  480 (519)
Q Consensus       403 ~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~sp  480 (519)
                      ++++.|.+|++|++.+.++++++. |...|-|+++   .++++++|+.|.+|++||+..|.++. +.+|..-|.++.|  
T Consensus       334 VsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--  408 (499)
T KOG0281|consen  334 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--  408 (499)
T ss_pred             EEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--
Confidence            999999999999999999999996 9999999998   67999999999999999999999984 7889999999999  


Q ss_pred             CCCEEEEEecCCeEEEEECCCC
Q 010037          481 DGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       481 dg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      |.+.+++|..||+|+|||+..+
T Consensus       409 d~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  409 DNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             cCceeeeccccceEEEEecccc
Confidence            6778999999999999999754

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.95  E-value=1.9e-25  Score=218.96  Aligned_cols=245  Identities=20%  Similarity=0.309  Sum_probs=185.9

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      ...|..-|.++.|+|||.++|+.+.||+|.+||-+.+.+...    ...-.+|++.|.+|.|+||++.|+|++.|.+++|
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~----l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI  261 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE----LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI  261 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE----ecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence            445667788899999999999999999999999876554211    0112489999999999999999999999999999


Q ss_pred             EecccCeeeceeeccCCC---CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          311 WKVIEHERLDGFDVQDTD---PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      ||+.+.++..++......   ...+.|.   ...+               +.-+..+.+.++++...    .+++.+.||
T Consensus       262 WdVs~~slv~t~~~~~~v~dqqvG~lWq---kd~l---------------ItVSl~G~in~ln~~d~----~~~~~i~GH  319 (603)
T KOG0318|consen  262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQ---KDHL---------------ITVSLSGTINYLNPSDP----SVLKVISGH  319 (603)
T ss_pred             EEeeccceEEEeecCCchhceEEEEEEe---CCeE---------------EEEEcCcEEEEecccCC----Chhheeccc
Confidence            999999988888665441   1111121   1112               22333444555544432    357778889


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE--------------------------------------------
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--------------------------------------------  422 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~--------------------------------------------  422 (519)
                      ...|++++.+|++ +|++|+.||.|.-|+..++..-                                            
T Consensus       320 nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~  399 (603)
T KOG0318|consen  320 NKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKS  399 (603)
T ss_pred             ccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccc
Confidence            9999999999988 8999999999888876532110                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 010037          423 --------------------------------------------------------------------------------  422 (519)
Q Consensus       423 --------------------------------------------------------------------------------  422 (519)
                                                                                                      
T Consensus       400 ~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e  479 (603)
T KOG0318|consen  400 EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE  479 (603)
T ss_pred             ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence                                                                                            


Q ss_pred             --EEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          423 --RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       423 --~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                        ....|..+|++|+++| ++.|||+|...++|.+||+.+.++.  .|.-|...|.+++|+|+.+++|+|+.|-.|.||+
T Consensus       480 e~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  480 EAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             eeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence              0112567788888888 8888888888888888888877665  4677999999999999999999999999999999


Q ss_pred             CCCC
Q 010037          499 IKGM  502 (519)
Q Consensus       499 l~~~  502 (519)
                      +...
T Consensus       559 v~kP  562 (603)
T KOG0318|consen  559 VKKP  562 (603)
T ss_pred             ccCh
Confidence            9754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=2e-27  Score=230.84  Aligned_cols=244  Identities=22%  Similarity=0.341  Sum_probs=204.4

Q ss_pred             cCCeeeEeecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          228 LGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      .....+|...+.++.|.| .+.+|++++.|+.|+||++...      ..+.+++.+|..+|..++|+++|..++|++.|+
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            345778889999999999 8999999999999999998752      334567899999999999999999999999999


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      .|++||+++|+++..+.... .+.|+.+.+...+.+               +.+..++.++.|+.+...    .++++..
T Consensus       281 ~lKlwDtETG~~~~~f~~~~-~~~cvkf~pd~~n~f---------------l~G~sd~ki~~wDiRs~k----vvqeYd~  340 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLDK-VPTCVKFHPDNQNIF---------------LVGGSDKKIRQWDIRSGK----VVQEYDR  340 (503)
T ss_pred             eeeeeccccceEEEEEecCC-CceeeecCCCCCcEE---------------EEecCCCcEEEEeccchH----HHHHHHh
Confidence            99999999999988887643 456777766663332               456677788888888754    4777888


Q ss_pred             cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE--------------------------------ec-------
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV--------------------------------FS-------  426 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~--------------------------------~~-------  426 (519)
                      |-+.|..+.|-++| ++++++.|++|+||+.+.+.+++.                                |.       
T Consensus       341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~  420 (503)
T KOG0282|consen  341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL  420 (503)
T ss_pred             hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence            99999999999999 999999999999999775433221                                10       


Q ss_pred             ----------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCC-CEEEEEecCCeE
Q 010037          427 ----------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KGGIVGTMTGNC  494 (519)
Q Consensus       427 ----------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v  494 (519)
                                -.++-..+.|+| |+.+|++|+.||.+.+||.++.+++ .+..|..++..+.|+|.. ..+|+++.+|.|
T Consensus       421 nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~I  499 (503)
T KOG0282|consen  421 NKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLI  499 (503)
T ss_pred             CHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCcee
Confidence                      135567789999 9999999999999999999999888 688899999999999965 579999999999


Q ss_pred             EEEE
Q 010037          495 RFYD  498 (519)
Q Consensus       495 ~iwd  498 (519)
                      ++||
T Consensus       500 kiwd  503 (503)
T KOG0282|consen  500 KIWD  503 (503)
T ss_pred             EecC
Confidence            9996

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.6e-26  Score=230.26  Aligned_cols=247  Identities=21%  Similarity=0.294  Sum_probs=214.3

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      +.++|.++.|||....++++-.+|+|.||+++++.       +.+.+.-..-||++.+|-+..+++++|+.|..||||++
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            56888899999999999999999999999998544       33456667889999999999999999999999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .+++.+..+..|...+.++...|..+.                .++.+.+..+.+|+-..   .....+++.||...|.+
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~----------------vLtsSDDm~iKlW~we~---~wa~~qtfeGH~HyVMq  145 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPY----------------VLTSSDDMTIKLWDWEN---EWACEQTFEGHEHYVMQ  145 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCe----------------EEecCCccEEEEeeccC---ceeeeeEEcCcceEEEE
Confidence            999999999999999999887776543                23455566666665432   23457889999999999


Q ss_pred             EEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCcEE-eecc
Q 010037          394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTD  468 (519)
Q Consensus       394 l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~  468 (519)
                      ++|+|..  .+++++.|++|+||.+.+..+..++. |...|+||.+-|. +..||++|+.|.+|+|||..+..++ .+.+
T Consensus       146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG  225 (794)
T KOG0276|consen  146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG  225 (794)
T ss_pred             EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence            9999977  99999999999999999999999886 9999999999872 2359999999999999999999998 4788


Q ss_pred             CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       469 ~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      |...|..++|+|.-..+++|+.||++|||+..+-++..
T Consensus       226 Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~  263 (794)
T KOG0276|consen  226 HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK  263 (794)
T ss_pred             ccccceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence            99999999999999999999999999999998766543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=2e-26  Score=223.01  Aligned_cols=209  Identities=25%  Similarity=0.426  Sum_probs=181.5

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccc----------------------------------cc
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------SL  274 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~----------------------------------~~  274 (519)
                      .++.+|..++.++.|+..|.+|++++.||++.+||...+.....                                  .-
T Consensus       270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~  349 (524)
T KOG0273|consen  270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED  349 (524)
T ss_pred             hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC
Confidence            34677888899999999999999999999999999954332110                                  00


Q ss_pred             cccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceee
Q 010037          275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK  354 (519)
Q Consensus       275 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (519)
                      .+..++.+|.++|.+|.|+|.|.+|+|++.|++++||......+                                    
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~------------------------------------  393 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS------------------------------------  393 (524)
T ss_pred             CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc------------------------------------
Confidence            12246889999999999999999999999999999999765543                                    


Q ss_pred             eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC----------eEEEEeCCCcEEEEECCCCeEEEE
Q 010037          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----------FLLSSSADKTVRLWQVGIDRCLRV  424 (519)
Q Consensus       355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~----------~L~sgs~Dg~V~lWdl~~~~~~~~  424 (519)
                                                .+.+++|...|..+.|+|.|          .|++++.|++|++||+..+.++.+
T Consensus       394 --------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~  447 (524)
T KOG0273|consen  394 --------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT  447 (524)
T ss_pred             --------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence                                      34466788888888888732          799999999999999999999999


Q ss_pred             e-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          425 F-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       425 ~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      | +|..+|++|+|+| ++.|+|+|+.||.|.||+++++++++.....+.|..++|+.+|.+|..+-.||.+++.|++
T Consensus       448 f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  448 LMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9 6999999999999 9999999999999999999999999888888889999999999999999999999999975

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=2.2e-26  Score=235.90  Aligned_cols=204  Identities=23%  Similarity=0.371  Sum_probs=184.3

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+.+|..+|....|+|+.++|++++.|++|++|.+....       +.-.++||..||+++.|+|.|-|+|||+.|++.+
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr  518 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR  518 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccce-------eEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence            378899999999999999999999999999999987433       3345789999999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +|........+.+..+...+.|+.|.|+..                ...+++.+.++.+|+....    ..++.|.||.+
T Consensus       519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~----------------Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~  578 (707)
T KOG0263|consen  519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSN----------------YVATGSSDRTVRLWDVSTG----NSVRIFTGHKG  578 (707)
T ss_pred             eeecccCCchhhhcccccccceEEECCccc----------------ccccCCCCceEEEEEcCCC----cEEEEecCCCC
Confidence            999999999999999999999999988763                2346788889999988763    44888999999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      +|.+++|+|+| +|++|+.|+.|+|||+.+++.+..+. |.+.|++|.|+. ++..||+|+.|.+|++||+...
T Consensus       579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhh
Confidence            99999999999 99999999999999999999888875 999999999999 9999999999999999998653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=3.6e-25  Score=214.28  Aligned_cols=248  Identities=25%  Similarity=0.447  Sum_probs=202.0

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+..|.+.+.+++|+|+++++++++.+|.|++|++....       ....+..|...|..+.|+|++++|++++.||.|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~   76 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR   76 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence            455677888899999999999999999999999987543       2235678999999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +|++.+++....+..+...+.++.+.+.  ..++              +.+..++.+.+|+...    .+....+..|..
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~--------------~~~~~~~~i~~~~~~~----~~~~~~~~~~~~  136 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSPD--GRIL--------------SSSSRDKTIKVWDVET----GKCLTTLRGHTD  136 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcCC--CCEE--------------EEecCCCeEEEEECCC----cEEEEEeccCCC
Confidence            9999987777666665555556655544  1122              1222355666666552    344566778999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~  467 (519)
                      .|.+++|+|++ ++++++.|+.|++||+++++.+..+. |...++++.|+| +++.+++++.|+.|++||+++++.+...
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecch
Confidence            99999999988 77777779999999999888888776 777999999999 8889999999999999999988877544


Q ss_pred             -cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          468 -DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       468 -~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                       .+...+.+++|+|++.++++++.+|.|++||+.+++..
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~  254 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV  254 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence             78889999999999988888888999999999876543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=8.8e-26  Score=212.55  Aligned_cols=252  Identities=19%  Similarity=0.206  Sum_probs=200.2

Q ss_pred             ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      ....+..|.+.+-+++.+|+.+++++|+.|..-.||+...+..       .-++.+|+..|.++.|+.+|.|||||+.+|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-------~~eltgHKDSVt~~~FshdgtlLATGdmsG  128 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-------AGELTGHKDSVTCCSFSHDGTLLATGDMSG  128 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-------eeEecCCCCceEEEEEccCceEEEecCCCc
Confidence            3445667888888999999999999999999999999986652       235789999999999999999999999999


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      .|+||+..++.....+...-..+.-+.|.+   ..             ...+.++.++.+.+|.....    ...+.+.|
T Consensus       129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp---~a-------------~illAG~~DGsvWmw~ip~~----~~~kv~~G  188 (399)
T KOG0296|consen  129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHP---RA-------------HILLAGSTDGSVWMWQIPSQ----ALCKVMSG  188 (399)
T ss_pred             cEEEEEcccCceEEEeecccCceEEEEecc---cc-------------cEEEeecCCCcEEEEECCCc----ceeeEecC
Confidence            999999999987776653333333333332   11             12345677777777765442    44677899


Q ss_pred             cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---C-----------------------------------
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---H-----------------------------------  427 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h-----------------------------------  427 (519)
                      |+.++++=.|.|+| +++++..||+|++||..+++++..+.   |                                   
T Consensus       189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv  268 (399)
T KOG0296|consen  189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV  268 (399)
T ss_pred             CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence            99999999999999 99999999999999999998876553   0                                   


Q ss_pred             --------------CCcEEEEEEeeC--CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC
Q 010037          428 --------------NNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT  491 (519)
Q Consensus       428 --------------~~~V~~v~fsp~--d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d  491 (519)
                                    ...+.||.+.|.  .-.++|+|+.||+|.|||+...++.+...|...|+.+.|-+ ..+|++++.+
T Consensus       269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~  347 (399)
T KOG0296|consen  269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN  347 (399)
T ss_pred             EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC
Confidence                          011112222221  33578899999999999999999999999999999999999 6789999999


Q ss_pred             CeEEEEECCCCeeee
Q 010037          492 GNCRFYDIKGMQIFD  506 (519)
Q Consensus       492 g~v~iwdl~~~~l~~  506 (519)
                      |.|+.||.++|++.-
T Consensus       348 g~v~~wDaRtG~l~~  362 (399)
T KOG0296|consen  348 GKVRQWDARTGQLKF  362 (399)
T ss_pred             ceEEeeeccccceEE
Confidence            999999999998854

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.1e-25  Score=232.50  Aligned_cols=214  Identities=15%  Similarity=0.220  Sum_probs=170.2

Q ss_pred             eeeEeecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcE
Q 010037          231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I  308 (519)
                      +.+|.+.+.+++|+| ++.+|++|+.|++|+||++...............+.+|...|.+++|+|++ ++|++|+.|++|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            566788888999999 888999999999999999975432111112334678999999999999975 699999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      +|||+.+++.                                                              +..+.+|.
T Consensus       151 rIWDl~tg~~--------------------------------------------------------------~~~l~~h~  168 (493)
T PTZ00421        151 NVWDVERGKA--------------------------------------------------------------VEVIKCHS  168 (493)
T ss_pred             EEEECCCCeE--------------------------------------------------------------EEEEcCCC
Confidence            9999976642                                                              23456788


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCc-EEEEEEeeCCCCEEEEEe----CCCeEEEEEcCCC
Q 010037          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY-VTSVAFNPVDDNYFISGS----IDGKVRIWEVRRC  461 (519)
Q Consensus       389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~-V~~v~fsp~d~~~l~sgs----~Dg~V~iwd~~~~  461 (519)
                      ..|.+++|+|++ +|++++.|++|+|||+++++.+..+. |... +..+.|.| ++..+++++    .|+.|++||+++.
T Consensus       169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCC
Confidence            999999999999 99999999999999999999888775 6554 45778998 666666543    4799999999875


Q ss_pred             c-EEeec--cCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCCeeeec
Q 010037          462 Q-VVDYT--DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       462 ~-~~~~~--~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~~l~~~  507 (519)
                      . .+...  .....+....|++++++|++++ .||.|++||+.+++++..
T Consensus       248 ~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        248 ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence            4 33322  2334566678999999999887 599999999998876543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.6e-25  Score=227.48  Aligned_cols=239  Identities=27%  Similarity=0.418  Sum_probs=200.2

Q ss_pred             cccceeecCCCCeEEeeecC-CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          237 RHGSATLKPGDHELTLGQRM-RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~d-g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      ++..++|+..|..||.|+.. |++-||++......+       ..++|...|.+++++|||+++|||++||.|+|||..+
T Consensus       309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl-------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S  381 (893)
T KOG0291|consen  309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL-------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS  381 (893)
T ss_pred             eeeEEEecccCCEEEEcCCccceEEEEEeeccceee-------eccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence            34457899999999997654 899999998544332       3578999999999999999999999999999999999


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc-CCCeeEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDL  394 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l  394 (519)
                      +-|..++..|...++.+.|...+.                ..+..+.++++..|+.+.++-    .+++... .....|+
T Consensus       382 gfC~vTFteHts~Vt~v~f~~~g~----------------~llssSLDGtVRAwDlkRYrN----fRTft~P~p~Qfscv  441 (893)
T KOG0291|consen  382 GFCFVTFTEHTSGVTAVQFTARGN----------------VLLSSSLDGTVRAWDLKRYRN----FRTFTSPEPIQFSCV  441 (893)
T ss_pred             ceEEEEeccCCCceEEEEEEecCC----------------EEEEeecCCeEEeeeecccce----eeeecCCCceeeeEE
Confidence            999999999999888888876653                234567788888888765432    4444442 3467899


Q ss_pred             EEcCCC-eEEEEeCCC-cEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEEeeccCC
Q 010037          395 SWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDIR  470 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg-~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~~  470 (519)
                      +..|.| .+.+|+.|. .|.+|++++|+.+-.+. |.++|.+++|+| .+..|++||.|.+||+||+-.. ..+....+.
T Consensus       442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~  520 (893)
T KOG0291|consen  442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEIR  520 (893)
T ss_pred             EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEeec
Confidence            999999 667777664 59999999999999996 999999999999 9999999999999999998654 455666778


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       471 ~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ..+++++|+|||+.|++++.||.|.+||+..+.
T Consensus       521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             cceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence            889999999999999999999999999997654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=7.9e-26  Score=229.52  Aligned_cols=246  Identities=21%  Similarity=0.296  Sum_probs=204.0

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVR  309 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~  309 (519)
                      +.+|.+.+.++....+|.+|++|++|.++++|.+++...   ...+.+...+|+..|.+++++..+ .+|+++|.|++++
T Consensus       361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~---~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK  437 (775)
T KOG0319|consen  361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS---KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK  437 (775)
T ss_pred             EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc---hhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence            455666666766667788999999999999999843332   233445568999999999998755 5999999999999


Q ss_pred             EEecccCee---------eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037          310 VWKVIEHER---------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (519)
Q Consensus       310 iWd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (519)
                      +|++...+.         ......|...+.++.+.++.                ....+++.+.++.+|....    ...
T Consensus       438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd----------------kLiAT~SqDktaKiW~le~----~~l  497 (775)
T KOG0319|consen  438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND----------------KLIATGSQDKTAKIWDLEQ----LRL  497 (775)
T ss_pred             EecCCCcccccccceehhhHHHHhhcccccceEecCCC----------------ceEEecccccceeeecccC----ceE
Confidence            999976221         11223455566666666554                1234677788888887763    345


Q ss_pred             eeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      ...+.||+..|.|+.|+|.. .++|+|.|++|+||.+.+..|+++|. |...|..+.|-. ++..|++++.||-|+||++
T Consensus       498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEec
Confidence            78899999999999999988 99999999999999999999999998 999999999999 9999999999999999999


Q ss_pred             CCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          459 RRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       459 ~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +++.+. .+..|.+.|++++-+|.+.++++|+.||.|.+|.=.
T Consensus       577 kt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  577 KTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             cchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            999988 588899999999999999999999999999999643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-25  Score=231.68  Aligned_cols=256  Identities=19%  Similarity=0.284  Sum_probs=212.7

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      .++..++|||....++++-..|.|++||+..+.       ....|..|.++|..+.|+|++.+++|||.|-.|+||++.+
T Consensus        10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             ccccceecCCCCCEEEEeecCceeeeehhhhhh-------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            456668999999999999999999999998433       2345789999999999999999999999999999999999


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      .+++.++..|...+..+.|...-                -+.++.+.+-++.+|+...    .+.+..+.||...|.|..
T Consensus        83 rrclftL~GHlDYVRt~~FHhey----------------PWIlSASDDQTIrIWNwqs----r~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHHEY----------------PWILSASDDQTIRIWNWQS----RKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             ceehhhhccccceeEEeeccCCC----------------ceEEEccCCCeEEEEeccC----CceEEEEecCceEEEeec
Confidence            99999998888877777765433                3456778888888887765    467899999999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCe----------------------------EE-EEe-cCCCcEEEEEEeeCCCCEE
Q 010037          396 WSKNG-FLLSSSADKTVRLWQVGIDR----------------------------CL-RVF-SHNNYVTSVAFNPVDDNYF  444 (519)
Q Consensus       396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~----------------------------~~-~~~-~h~~~V~~v~fsp~d~~~l  444 (519)
                      |+|.. .++++|.|.+|||||+..-+                            .+ ..+ .|...|+-++|+| .-.+|
T Consensus       143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-Tlpli  221 (1202)
T KOG0292|consen  143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLI  221 (1202)
T ss_pred             cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceE
Confidence            99976 99999999999999985211                            11 122 2889999999999 88899


Q ss_pred             EEEeCCCeEEEEEcCCCcEE---eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc--ccceeEEecCC
Q 010037          445 ISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS--TTAYLFALLGH  519 (519)
Q Consensus       445 ~sgs~Dg~V~iwd~~~~~~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~--~~~~~~~l~GH  519 (519)
                      ++|+.|..|++|..+..+.-   ...+|.+.|+++-|+|...++++.+.|++|+|||+...+.++.-  ....++-++.|
T Consensus       222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laah  301 (1202)
T KOG0292|consen  222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAH  301 (1202)
T ss_pred             EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEec
Confidence            99999999999999876654   46789999999999999999999999999999999877655432  33344444433

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.6e-25  Score=198.01  Aligned_cols=252  Identities=17%  Similarity=0.226  Sum_probs=212.8

Q ss_pred             ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      +...+.|+...+..+.|+-+|++.++++.|.+|++|+...+.       ..+++.+|...|..++.+.|...|++|+.|.
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dnskf~s~GgDk   81 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDNSKFASCGGDK   81 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccccccccCCCCc
Confidence            344577888899999999999999999999999999987443       4467899999999999999999999999999


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      .|.+||+.+|+....+..|...+..+.|....                ...+.++-+..+..|+.+...  .+|++.+..
T Consensus        82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees----------------SVv~SgsfD~s~r~wDCRS~s--~ePiQilde  143 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES----------------SVVASGSFDSSVRLWDCRSRS--FEPIQILDE  143 (307)
T ss_pred             eEEEEEcccCeeeeecccccceeeEEEecCcc----------------eEEEeccccceeEEEEcccCC--CCccchhhh
Confidence            99999999999999999988888777775433                233466677788888876543  578888988


Q ss_pred             cCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-e
Q 010037          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D  465 (519)
Q Consensus       387 h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~  465 (519)
                      ....|.++..... .+++|+.||++|.||++.++...-. ...+|+|++|++ ++++.++++.|++|++.|-.+++++ .
T Consensus       144 a~D~V~Si~v~~h-eIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~s  220 (307)
T KOG0316|consen  144 AKDGVSSIDVAEH-EIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKS  220 (307)
T ss_pred             hcCceeEEEeccc-EEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHH
Confidence            8999999987644 8999999999999999998765433 567899999999 9999999999999999999999998 4


Q ss_pred             eccCCCce--EEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          466 YTDIREIV--SAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       466 ~~~~~~~V--~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +.+|.+.=  ...+++.....+++|+.||.|++||+.+.+++.
T Consensus       221 YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s  263 (307)
T KOG0316|consen  221 YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS  263 (307)
T ss_pred             hcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence            77776654  445777778899999999999999998776543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=4.3e-25  Score=230.53  Aligned_cols=248  Identities=24%  Similarity=0.360  Sum_probs=208.5

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~  307 (519)
                      ...+.+|...+..++|+|+++++++|+.|++|+||++....      ...+++.+|...|++++|+|+|+++++|+.|++
T Consensus       196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t  269 (456)
T KOG0266|consen  196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT  269 (456)
T ss_pred             hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC------eEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence            34456788888899999999999999999999999994322      234578899999999999999999999999999


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |+|||+.++++...+..+...++++.|..+...                .+.++.++.+.+|+.......  ++..+.++
T Consensus       270 vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~----------------l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~  331 (456)
T KOG0266|consen  270 VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL----------------LVSASYDGTIRVWDLETGSKL--CLKLLSGA  331 (456)
T ss_pred             EEEEeccCCeEEEeeeccCCceEEEEECCCCCE----------------EEEcCCCccEEEEECCCCcee--eeecccCC
Confidence            999999999999999999999888888766532                234466888999988876543  34556665


Q ss_pred             CCC--eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCC---cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          388 SSE--VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       388 ~~~--V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~---~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      ...  ++++.|+|++ +|++++.|+++++||+..+.++..+. |..   .+.+...++ .+.++++|+.|+.|++||+.+
T Consensus       332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-CCCeEEEEeCCceEEEEeCCc
Confidence            555  9999999999 99999999999999999999988886 555   344445566 899999999999999999998


Q ss_pred             CcEE-eeccC-CCceEEEEEeeCCCEEEEEe--cCCeEEEEECC
Q 010037          461 CQVV-DYTDI-REIVSAVCYCPDGKGGIVGT--MTGNCRFYDIK  500 (519)
Q Consensus       461 ~~~~-~~~~~-~~~V~~v~~spdg~~l~sgs--~dg~v~iwdl~  500 (519)
                      +..+ .+.+| ...+..++++|..+++++++  .|+.+++|...
T Consensus       411 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  411 GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            7766 57777 78899999999999999998  68899999754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=1.6e-25  Score=207.45  Aligned_cols=250  Identities=25%  Similarity=0.365  Sum_probs=204.6

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCcccccccc-ccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      .+-|..|+|||++|++|+.||.|.||++..++....- .+....|--|..+|.|+.|+.|...||+|+.||.|++|.+.+
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t  294 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET  294 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence            3446789999999999999999999999866543221 222334667899999999999999999999999999999999


Q ss_pred             Ceeeceee-ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037          316 HERLDGFD-VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       316 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (519)
                      |.|+..+. .+...+.|+.|+.++...+                .++.+..+.+...+    .++.+.++.||...|+..
T Consensus       295 G~ClRrFdrAHtkGvt~l~FSrD~SqiL----------------S~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a  354 (508)
T KOG0275|consen  295 GQCLRRFDRAHTKGVTCLSFSRDNSQIL----------------SASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEA  354 (508)
T ss_pred             chHHHHhhhhhccCeeEEEEccCcchhh----------------cccccceEEEeccc----cchhHHHhcCccccccce
Confidence            99999997 6777888888877664332                23333334333333    256788999999999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eec--
Q 010037          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYT--  467 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~--  467 (519)
                      .|.++| ++++++.||+|++|+.++.+|+.+|+   ...+|+++-.-|.+...++++....+|.|.++. ++++ .+.  
T Consensus       355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSG  433 (508)
T KOG0275|consen  355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSG  433 (508)
T ss_pred             EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccC
Confidence            999999 99999999999999999999999996   566899999999888999999999999999997 4554 332  


Q ss_pred             -cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          468 -DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       468 -~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                       ...+...+.+.+|.|.++.+.+.|+.++.|.+.+|++...
T Consensus       434 kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t  474 (508)
T KOG0275|consen  434 KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT  474 (508)
T ss_pred             CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence             2345567789999999999999999999999999987653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=5.9e-25  Score=207.86  Aligned_cols=241  Identities=21%  Similarity=0.353  Sum_probs=188.8

Q ss_pred             CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC---CEEEEEeCCCcEEEEecccCeeece--
Q 010037          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVWKVIEHERLDG--  321 (519)
Q Consensus       247 g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~LaSgs~Dg~I~iWd~~~~~~~~~--  321 (519)
                      ++.+++|++||.++||+.....        ...+.+|.++|.+++|....   ..|++++.|.++++|.+..+.....  
T Consensus       115 ~~~IltgsYDg~~riWd~~Gk~--------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~  186 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKGKS--------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL  186 (423)
T ss_pred             CceEEEeecCCeeEEEecCCce--------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH
Confidence            6899999999999999987432        24578999999988885533   3599999999999999987764322  


Q ss_pred             --eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc---------------------ccccc
Q 010037          322 --FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV---------------------FRLLE  378 (519)
Q Consensus       322 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---------------------~~~~~  378 (519)
                        ...|...+.++.....+                ...+.++.+..+.+|+...                     .....
T Consensus       187 ~~~~GHk~~V~sVsv~~sg----------------tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r  250 (423)
T KOG0313|consen  187 KVCRGHKRSVDSVSVDSSG----------------TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR  250 (423)
T ss_pred             hHhcccccceeEEEecCCC----------------CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence              22444444444332222                2234555566666666110                     01123


Q ss_pred             cceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      .|+..+.||..+|.++.|++.+.+++++.|.+|+.||+.++.++..+..+..++||..+| ..++||+|+.|..|++||.
T Consensus       251 ~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  251 TPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDP  329 (423)
T ss_pred             CceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCC
Confidence            678899999999999999997799999999999999999999999999999999999999 9999999999999999999


Q ss_pred             CCC--cEE--eeccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCCeeeeccccceeEEecCC
Q 010037          459 RRC--QVV--DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLGH  519 (519)
Q Consensus       459 ~~~--~~~--~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~l~~~~~~~~~~~l~GH  519 (519)
                      +++  .++  .+.+|.+.|.++.|+|.. .+|++|+.||++++||+++       +..++|.+.||
T Consensus       330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS-------~k~plydI~~h  388 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS-------TKAPLYDIAGH  388 (423)
T ss_pred             CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc-------CCCcceeeccC
Confidence            885  344  689999999999999965 5688999999999999975       33456666665

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.3e-25  Score=212.41  Aligned_cols=268  Identities=17%  Similarity=0.243  Sum_probs=193.6

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+..|.+.|--+.|+++|++||+++.|.+..||.+.....    +...+++.+|..+|.-+.||||.+||++|+.|..+.
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            3455667777789999999999999999999999875432    344567899999999999999999999999999999


Q ss_pred             EEecccCeeeceeecc-CCCCceEEEeecCCCCe--------EEeeccCCce--------eeeeeeccCCCeeEEEe---
Q 010037          310 VWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQL--------IPIDVDKEKI--------DKTKSLRKSSDLTCVVL---  369 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--------~~~~~~~~s~~~~~~~~---  369 (519)
                      +||+.++.+...+... ...+.+..|.++....+        +.++.++...        .+...+.-+.++..++.   
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence            9999999988777554 45667777777764422        2222222211        11222222222221111   


Q ss_pred             CCcccccc--ccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCE
Q 010037          370 PPKVFRLL--EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNY  443 (519)
Q Consensus       370 ~~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~  443 (519)
                      +.++.-+.  ...-..+-....+|++++.+.++ ++++.-.+..|++||+.....++.+.   ....+-.-+|--.+..+
T Consensus       375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f  454 (519)
T KOG0293|consen  375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF  454 (519)
T ss_pred             ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence            11111000  01111123345688888888888 77777788889999998776666553   34456666777656789


Q ss_pred             EEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECCC
Q 010037          444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~~  501 (519)
                      +++||.|++|+||+..+++++ .+.+|...|++++|+|. ..++|+|+.||+||||-...
T Consensus       455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  455 IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999999999999999999988 68999999999999995 46799999999999998764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=2.8e-24  Score=208.04  Aligned_cols=237  Identities=27%  Similarity=0.474  Sum_probs=194.1

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      +...+..+.|.|+++++++++.+|.|++|++....       ....+..|...|.++.|+++++++++++.||.|++|++
T Consensus        50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            33444568999999999999999999999998542       22356789999999999999999999988999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .+++....+..+...+.++.+.+.  ..++              +.+..++.+.+|+...    .+++..+..|...|.+
T Consensus       123 ~~~~~~~~~~~~~~~i~~~~~~~~--~~~l--------------~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~i~~  182 (289)
T cd00200         123 ETGKCLTTLRGHTDWVNSVAFSPD--GTFV--------------ASSSQDGTIKLWDLRT----GKCVATLTGHTGEVNS  182 (289)
T ss_pred             CCcEEEEEeccCCCcEEEEEEcCc--CCEE--------------EEEcCCCcEEEEEccc----cccceeEecCccccce
Confidence            988877777755555666666554  1111              1222345566666543    3456677789999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCC
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR  470 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~  470 (519)
                      ++|+|++ .+++++.|+.|++||+++++.+..+ .|...+.+++|+| ++.++++++.||.|++||+.+++.. .+..|.
T Consensus       183 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~  261 (289)
T cd00200         183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHT  261 (289)
T ss_pred             EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence            9999999 8999999999999999999999888 6888999999999 7888888888999999999987766 456788


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       471 ~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      ..|.+++|+|++++|++++.||.+++|+
T Consensus       262 ~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         262 NSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            8999999999999999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=3.8e-24  Score=239.11  Aligned_cols=264  Identities=17%  Similarity=0.250  Sum_probs=197.0

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccc-cccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSL-YTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~-~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I  308 (519)
                      +..|...+.+++|+|+|+++|+|+.|+.|+||+........... .....+ .+...|.+++|++ ++.+||+++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            44466778889999999999999999999999976421111110 111122 3456899999987 57899999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEe---------eccCCcee------------------eeeeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI---------DVDKEKID------------------KTKSLRKS  361 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~------------------~~~~~~~s  361 (519)
                      ++||+.+++.+..+..+...+.++.|.+.....++..         +.......                  ....+.++
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence            9999999998888888888788887765433333322         22111100                  11223455


Q ss_pred             CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCC------eEEEEec-CCCcEEEE
Q 010037          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID------RCLRVFS-HNNYVTSV  434 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~------~~~~~~~-h~~~V~~v  434 (519)
                      .++.+.+|+.....   .++..+.+|...|.++.|.+..+|++++.|++|+|||+..+      .++..+. |...++++
T Consensus       638 ~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v  714 (793)
T PLN00181        638 ADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV  714 (793)
T ss_pred             CCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence            66677777765321   24667789999999999985559999999999999999743      4666665 88999999


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--------------eccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--------------~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      +|+| ++.+|++|+.|+.|+||+......+.              ...+...|.+++|+|++..|++|+.+|.|+||++
T Consensus       715 ~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        715 GLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            9999 89999999999999999987653221              1234567999999999999999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.93  E-value=5.8e-25  Score=197.29  Aligned_cols=187  Identities=21%  Similarity=0.438  Sum_probs=165.8

Q ss_pred             CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCC
Q 010037          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT  327 (519)
Q Consensus       248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~  327 (519)
                      -+|++++.|.+|++|....+.       +..+++...+.|+.+...|++++||+|+. ..||+||+.++..         
T Consensus        11 viLvsA~YDhTIRfWqa~tG~-------C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np---------   73 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGI-------CSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP---------   73 (311)
T ss_pred             eEEEeccCcceeeeeehhcCe-------EEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC---------
Confidence            478999999999999987544       44567777889999999999999998875 5899999987652         


Q ss_pred             CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe
Q 010037          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS  406 (519)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs  406 (519)
                                                                         .|+.++.+|...|+.+.|.-+| .++||+
T Consensus        74 ---------------------------------------------------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs  102 (311)
T KOG0315|consen   74 ---------------------------------------------------NPVATFEGHTKNVTAVGFQCDGRWMYTGS  102 (311)
T ss_pred             ---------------------------------------------------CceeEEeccCCceEEEEEeecCeEEEecC
Confidence                                                               3577899999999999999999 999999


Q ss_pred             CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCE
Q 010037          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKG  484 (519)
Q Consensus       407 ~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~  484 (519)
                      .||+++|||++...+.+.+.|..+|++|..+| +...|++|..+|.|+|||+....+..  .......|.++...|||.+
T Consensus       103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm  181 (311)
T KOG0315|consen  103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM  181 (311)
T ss_pred             CCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence            99999999999999999999999999999999 88899999999999999999876553  3445578999999999999


Q ss_pred             EEEEecCCeEEEEECCCCe
Q 010037          485 GIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       485 l~sgs~dg~v~iwdl~~~~  503 (519)
                      |+.+...|++++|++-+.+
T Consensus       182 l~a~nnkG~cyvW~l~~~~  200 (311)
T KOG0315|consen  182 LAAANNKGNCYVWRLLNHQ  200 (311)
T ss_pred             EEEecCCccEEEEEccCCC
Confidence            9999999999999997643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.1e-24  Score=209.15  Aligned_cols=276  Identities=19%  Similarity=0.250  Sum_probs=212.8

Q ss_pred             CCcceeeeecCCCceeE-EccCCCchhhhhhcccccCCCcccccccccCCCCCCccccccCCccccccccchhhhhhhhc
Q 010037          143 DHAACRIDDWGKGADLV-VSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVK  221 (519)
Q Consensus       143 ~~~~~~~~~~d~g~~~~-~~~~~~~~~~~~~~l~~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~  221 (519)
                      +...|.++|+..|...+ ++.-..-++...   .-+. +.++.++.+.+-.-    .+|++.+.+...        .+  
T Consensus        16 d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl---~~l~-~~yllsaq~~rp~l----~vw~i~k~~~~~--------q~--   77 (476)
T KOG0646|consen   16 DPINCIVWDLRTGTSLLQYKGSYLAQAASL---TALN-NEYLLSAQLKRPLL----HVWEILKKDQVV--------QY--   77 (476)
T ss_pred             CCcceeEEecCCCceeEEecCcccccchhh---hhhc-hhheeeecccCccc----cccccCchhhhh--------hh--
Confidence            45569999999999877 666644333332   1221 35555555554321    255554432211        00  


Q ss_pred             cccccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE
Q 010037          222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS  301 (519)
Q Consensus       222 ~~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS  301 (519)
                                ......+.+++-+|.|.+|+.|+..|.|++|.+..+..       ...+.+|-.+|+|+.|+-||.+|+|
T Consensus        78 ----------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-------L~v~~aHYQ~ITcL~fs~dgs~iiT  140 (476)
T KOG0646|consen   78 ----------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-------LNVLSAHYQSITCLKFSDDGSHIIT  140 (476)
T ss_pred             ----------cccccceeeeecCCCceEEEeecccCcEEEEEeccccH-------HHHHHhhccceeEEEEeCCCcEEEe
Confidence                      01124567889999999999999999999999886553       2346789999999999999999999


Q ss_pred             EeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037          302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (519)
Q Consensus       302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (519)
                      ||.||.|.+|.+..--.                 ...                        +            ...+|+
T Consensus       141 gskDg~V~vW~l~~lv~-----------------a~~------------------------~------------~~~~p~  167 (476)
T KOG0646|consen  141 GSKDGAVLVWLLTDLVS-----------------ADN------------------------D------------HSVKPL  167 (476)
T ss_pred             cCCCccEEEEEEEeecc-----------------ccc------------------------C------------CCccce
Confidence            99999999999732110                 000                        0            023678


Q ss_pred             eEeeccCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          382 HEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       382 ~~~~~h~~~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      +.+..|.-+|+++...+.|   +|+|+|.|.++++||+..+..+.++.....+++++.+| .++.++.|+.+|.|.+.++
T Consensus       168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~  246 (476)
T KOG0646|consen  168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLL  246 (476)
T ss_pred             eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeeh
Confidence            8999999999999998875   99999999999999999999999999999999999999 8999999999999999887


Q ss_pred             CCCc-----------------EEeeccCCC--ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          459 RRCQ-----------------VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       459 ~~~~-----------------~~~~~~~~~--~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      .+..                 ...+.+|.+  .|++++++-||.+|++|+.||.|+|||+.+.+++..
T Consensus       247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            5421                 223667777  999999999999999999999999999998877653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=2.4e-24  Score=195.18  Aligned_cols=252  Identities=17%  Similarity=0.247  Sum_probs=196.7

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+.+|..++..+.++.+|.+|.++++|..+.||-...+..       .-++.||++.|+|+....+.++|+||+.|.+++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------lGty~GHtGavW~~Did~~s~~liTGSAD~t~k   77 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK   77 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------eeeecCCCceEEEEEecCCcceeeeccccceeE
Confidence            3567888888899999999999999999999997654332       246899999999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc---ccccccceeEeec
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV---FRLLEKPLHEFQG  386 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~  386 (519)
                      +||+.+|+++..++.+.. +..+.|.......++...-.           -+....+.+++.+.   -...+.|+..+..
T Consensus        78 LWDv~tGk~la~~k~~~~-Vk~~~F~~~gn~~l~~tD~~-----------mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t  145 (327)
T KOG0643|consen   78 LWDVETGKQLATWKTNSP-VKRVDFSFGGNLILASTDKQ-----------MGYTCFVSVFDIRDDSSDIDSEEPYLKIPT  145 (327)
T ss_pred             EEEcCCCcEEEEeecCCe-eEEEeeccCCcEEEEEehhh-----------cCcceEEEEEEccCChhhhcccCceEEecC
Confidence            999999999888876432 33444444433222222111           11222333333321   1123567888888


Q ss_pred             cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~  463 (519)
                      +...++.+-|.|-+ .|++|..||.|.+||+++++.+..-.  |...|+.++++| +..+|++++.|.+-++||.++-++
T Consensus       146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceee
Confidence            99999999999999 99999999999999999986655443  999999999999 999999999999999999875321


Q ss_pred             E--------------------------------------------------------eeccCCCceEEEEEeeCCCEEEE
Q 010037          464 V--------------------------------------------------------DYTDIREIVSAVCYCPDGKGGIV  487 (519)
Q Consensus       464 ~--------------------------------------------------------~~~~~~~~V~~v~~spdg~~l~s  487 (519)
                      +                                                        ...+|-++|++++|+|+|+..++
T Consensus       225 ~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS  304 (327)
T KOG0643|consen  225 LKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS  304 (327)
T ss_pred             EEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc
Confidence            1                                                        12457788999999999999999


Q ss_pred             EecCCeEEEEECCC
Q 010037          488 GTMTGNCRFYDIKG  501 (519)
Q Consensus       488 gs~dg~v~iwdl~~  501 (519)
                      |+.||.|++.-...
T Consensus       305 GGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  305 GGEDGYVRLHHFDS  318 (327)
T ss_pred             CCCCceEEEEEecc
Confidence            99999999986543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=7.8e-25  Score=222.35  Aligned_cols=248  Identities=19%  Similarity=0.256  Sum_probs=197.8

Q ss_pred             eeccccee-ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          235 IDRHGSAT-LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       235 ~~~~~~~~-~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      .+.+..+. +.|..++||+++..+.+++++......        +.+.||+..|.++....+|.+|+||+.|.++++|.+
T Consensus       323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~  394 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC--------QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL  394 (775)
T ss_pred             chhheeeeecCCccceEEEEeCCCceEEEecCCCce--------EEEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence            34444443 678999999999999999997764332        268899999999996667889999999999999988


Q ss_pred             ccCe----eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc-----eeEe
Q 010037          314 IEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP-----LHEF  384 (519)
Q Consensus       314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-----~~~~  384 (519)
                      ..+.    +......+...+.++.++...               ....+..+.+.++.+|+...-.-...+     ....
T Consensus       395 ~~~~~~~~~~a~~~gH~~svgava~~~~~---------------asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~  459 (775)
T KOG0319|consen  395 NNNCSKSLCVAQANGHTNSVGAVAGSKLG---------------ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE  459 (775)
T ss_pred             cCCcchhhhhhhhcccccccceeeecccC---------------ccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence            4443    233334455555555553222               223345667777777776551111111     1234


Q ss_pred             eccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       385 ~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      ..|...|+|++++|+. +++|||.|++.+||++.....+.++. |...|.||.|+| ..+.++++|.|++|+||.+.+..
T Consensus       460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fS  538 (775)
T KOG0319|consen  460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFS  538 (775)
T ss_pred             HhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccce
Confidence            5799999999999999 99999999999999999999999997 999999999999 89999999999999999999999


Q ss_pred             EEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          463 VVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       463 ~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ++. +.+|...|..+.|-.+|+.|++++.||-+++|+++++.+..
T Consensus       539 ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~  583 (775)
T KOG0319|consen  539 CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM  583 (775)
T ss_pred             eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence            994 77799999999999999999999999999999999876643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.6e-24  Score=195.84  Aligned_cols=263  Identities=17%  Similarity=0.245  Sum_probs=197.4

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVR  309 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~  309 (519)
                      ...|...+.+++|+-+|..|++|+.|++++||++.....     .......+|.+.|-.++|+| +...|++++.|.+|+
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            344556677899999999999999999999999986532     22335688999999999998 567899999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCC--------CCeEEeeccCCceeeeee-------eccCCCeeEEEeCCc--
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHL--------SQLIPIDVDKEKIDKTKS-------LRKSSDLTCVVLPPK--  372 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~--  372 (519)
                      +||++.+++...+......+ .+.|.+.+.        ..+..+.....++.....       +.-..+..+.+....  
T Consensus        91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             EEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence            99999999887776544332 233333322        222222222111110000       000011111111110  


Q ss_pred             cccc----cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 010037          373 VFRL----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFIS  446 (519)
Q Consensus       373 ~~~~----~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~s  446 (519)
                      ...+    .-+|+..+++|.....||.|+|+| +|++|+.|..|.|||+..--|++.+. +.-+|..|.|+. ++++||+
T Consensus       170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lAS  248 (313)
T KOG1407|consen  170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLAS  248 (313)
T ss_pred             eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceeec
Confidence            0011    247889999999999999999999 99999999999999999999999997 899999999999 9999999


Q ss_pred             EeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC---------CeEEEEECC
Q 010037          447 GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIK  500 (519)
Q Consensus       447 gs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d---------g~v~iwdl~  500 (519)
                      ||.|..|-|=++.+|..+....+.++...++|+|...+||-++.|         |.|++|-+.
T Consensus       249 aSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  249 ASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             cCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            999999999999999999999999999999999999999987765         556666543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=9.3e-25  Score=217.72  Aligned_cols=234  Identities=21%  Similarity=0.312  Sum_probs=201.3

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      .++.+..|-+-.+.+++|+.|.+|+||++.+..       ..+.|.+|.+-|+|++.+|...+++|++.|-+|++||.+.
T Consensus        56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~  128 (794)
T KOG0276|consen   56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN  128 (794)
T ss_pred             cchhhheeeeccceEEEecCCceEEEEecccce-------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence            455556777788899999999999999998544       4467999999999999999999999999999999999976


Q ss_pred             C-eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037          316 H-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       316 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (519)
                      + .+.+.+..|...+.+++|.|...+..+.               ++.+.++.+|....    ..+..++++|...|+|+
T Consensus       129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS---------------~sLDrTVKVWslgs----~~~nfTl~gHekGVN~V  189 (794)
T KOG0276|consen  129 EWACEQTFEGHEHYVMQVAFNPKDPNTFAS---------------ASLDRTVKVWSLGS----PHPNFTLEGHEKGVNCV  189 (794)
T ss_pred             ceeeeeEEcCcceEEEEEEecCCCccceee---------------eeccccEEEEEcCC----CCCceeeeccccCcceE
Confidence            5 5777889999989999999888776654               34455666666543    45678999999999999


Q ss_pred             EEcCCC---eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccC
Q 010037          395 SWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI  469 (519)
Q Consensus       395 ~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~  469 (519)
                      .|-+.|   +|++|+.|.+|+|||.++..|++++. |...|..+.|+| .-.++++|+.||+||||+..+-++.. +.-.
T Consensus       190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g  268 (794)
T KOG0276|consen  190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYG  268 (794)
T ss_pred             EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcC
Confidence            999977   99999999999999999999999997 999999999999 88999999999999999999877664 5555


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEE
Q 010037          470 REIVSAVCYCPDGKGGIVGTMTGNCRF  496 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs~dg~v~i  496 (519)
                      -+.|.+++-.+.+..+++|...|.|.+
T Consensus       269 leRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  269 LERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CceEEEEeecCCCCeEEEeccCCcEEE
Confidence            678999999998888999988887644

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=7.1e-25  Score=205.68  Aligned_cols=209  Identities=21%  Similarity=0.338  Sum_probs=180.5

Q ss_pred             cceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeee
Q 010037          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (519)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (519)
                      ...+.+|.+.|.|+++.|-+.+|+||+.|++|+|||+.++++..++..+...+..+.++..++.                
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpY----------------  207 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPY----------------  207 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCce----------------
Confidence            3467899999999999999999999999999999999999999888887777777776665532                


Q ss_pred             eeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEE
Q 010037          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSV  434 (519)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v  434 (519)
                      .+....+..+..|+...    .+.++.+.||-..|.|++.+|.- .|+||+.|.++||||+++...+.++. |..+|..|
T Consensus       208 lFs~gedk~VKCwDLe~----nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V  283 (460)
T KOG0285|consen  208 LFSAGEDKQVKCWDLEY----NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV  283 (460)
T ss_pred             EEEecCCCeeEEEechh----hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence            23445566666666654    34578899999999999999987 99999999999999999999999997 99999999


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      .+.| -+..+++||.|++|++||++.++.+ ....|...|.+++.+|....+|+++.| .|+-|++..+...+.
T Consensus       284 ~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  284 MCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN  355 (460)
T ss_pred             Eeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc
Confidence            9999 6667999999999999999998766 688899999999999999999999877 689999887766543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=1.1e-24  Score=201.05  Aligned_cols=217  Identities=17%  Similarity=0.323  Sum_probs=179.9

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCc------ccccc-----ccccccceeecCCCCEEEEEEccCCCEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK------QSREL-----SSLYTGQEFLAHEGSILTMKFSLDGQYL  299 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~------~~~~~-----~~~~~~~~l~~H~~~I~~l~fspdg~~L  299 (519)
                      ++.|...+.+.+|+|||.++|+|+.|-.|+|.|++.      .....     ..-...+++..|.+.|+++.|+|....|
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence            556777788899999999999999999999999972      11111     1123446788999999999999999999


Q ss_pred             EEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       300 aSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                      ++|+.|++|+++|+......+.++                                                        
T Consensus       188 iS~srD~tvKlFDfsK~saKrA~K--------------------------------------------------------  211 (430)
T KOG0640|consen  188 ISGSRDNTVKLFDFSKTSAKRAFK--------------------------------------------------------  211 (430)
T ss_pred             EeccCCCeEEEEecccHHHHHHHH--------------------------------------------------------
Confidence            999999999999986543222111                                                        


Q ss_pred             ceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                          ......+|.+|.|+|.| +|+.|....++++||+++-+|...-.    |.+.|++|.+++ .+++.++|+.||.|+
T Consensus       212 ----~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~Ik  286 (430)
T KOG0640|consen  212 ----VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIK  286 (430)
T ss_pred             ----HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEE
Confidence                11234679999999999 99999999999999999998876553    999999999999 999999999999999


Q ss_pred             EEEcCCCcEEee--ccC-CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037          455 IWEVRRCQVVDY--TDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       455 iwd~~~~~~~~~--~~~-~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~  508 (519)
                      |||--.++++..  ..| ...|.+..|..+|+++++.+.|..+++|.+.++..++..
T Consensus       287 lwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  287 LWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             eeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            999988888853  233 457999999999999999999999999999998876653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.92  E-value=2.5e-23  Score=204.12  Aligned_cols=246  Identities=19%  Similarity=0.290  Sum_probs=195.3

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC--CcEEEEecc
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTVRVWKVI  314 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D--g~I~iWd~~  314 (519)
                      .+.-..++|.|-++|+|...|+|+||+.......+.     .+++.-.++|..|.|+++++.|+..|+-  +-.+++-..
T Consensus        61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-----nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D  135 (603)
T KOG0318|consen   61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-----NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD  135 (603)
T ss_pred             eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-----eeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence            333467999999999999999999999875443332     3566678999999999999999887653  233333334


Q ss_pred             cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (519)
                      ++.....+..+...+..+.+.+..               ....++++.+..+.++.-.-|+.    ..++..|...|.|+
T Consensus       136 SG~SvGei~GhSr~ins~~~KpsR---------------PfRi~T~sdDn~v~ffeGPPFKF----k~s~r~HskFV~~V  196 (603)
T KOG0318|consen  136 SGNSVGEITGHSRRINSVDFKPSR---------------PFRIATGSDDNTVAFFEGPPFKF----KSSFREHSKFVNCV  196 (603)
T ss_pred             CCCccceeeccceeEeeeeccCCC---------------ceEEEeccCCCeEEEeeCCCeee----eecccccccceeeE
Confidence            666666777666665555554443               33445677777887776554433    45667899999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-----
Q 010037          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----  464 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-----  464 (519)
                      .|+|+| ++++++.||+|.+||=.+++.+..+.    |.+.|.+|+|+| |+..|++++.|.+++|||+.+.+++     
T Consensus       197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~  275 (603)
T KOG0318|consen  197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPM  275 (603)
T ss_pred             EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeec
Confidence            999999 99999999999999999999999986    999999999999 9999999999999999998764422     


Q ss_pred             ---------------------------------------eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          465 ---------------------------------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       465 ---------------------------------------~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                                                             ...+|...|++++.+||+++|++|+.||.|.-|+..++..-
T Consensus       276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence                                                   12457788999999999999999999999999999877654


Q ss_pred             ec
Q 010037          506 DL  507 (519)
Q Consensus       506 ~~  507 (519)
                      .+
T Consensus       356 ~~  357 (603)
T KOG0318|consen  356 RL  357 (603)
T ss_pred             cc
Confidence            33

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=2.3e-23  Score=217.17  Aligned_cols=208  Identities=21%  Similarity=0.263  Sum_probs=161.4

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCcccccccc------ccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS------LYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVW  311 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~------~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iW  311 (519)
                      .....++++..+++++.+.....|+...+...+..      ......+.+|.+.|++++|+| ++++|++|+.|++|+||
T Consensus        24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW  103 (493)
T PTZ00421         24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGW  103 (493)
T ss_pred             ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence            33456667666666666666666765432211100      011234789999999999999 88999999999999999


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      |+.++.....                                                       ...++..+.+|...|
T Consensus       104 di~~~~~~~~-------------------------------------------------------~~~~l~~L~gH~~~V  128 (493)
T PTZ00421        104 GIPEEGLTQN-------------------------------------------------------ISDPIVHLQGHTKKV  128 (493)
T ss_pred             ecCCCccccc-------------------------------------------------------cCcceEEecCCCCcE
Confidence            9865431100                                                       013356678999999


Q ss_pred             eEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eec
Q 010037          392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYT  467 (519)
Q Consensus       392 ~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~  467 (519)
                      .+++|+|.+  +|++++.|++|+|||+.+++.+..+. |...|++++|+| ++.+|++++.|++|+|||+++++.+ .+.
T Consensus       129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~  207 (493)
T PTZ00421        129 GIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVE  207 (493)
T ss_pred             EEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            999999975  89999999999999999999888886 899999999999 9999999999999999999998877 455


Q ss_pred             cCCCc-eEEEEEeeCCCEEEEEe----cCCeEEEEECCCC
Q 010037          468 DIREI-VSAVCYCPDGKGGIVGT----MTGNCRFYDIKGM  502 (519)
Q Consensus       468 ~~~~~-V~~v~~spdg~~l~sgs----~dg~v~iwdl~~~  502 (519)
                      .|... +..+.|.+++..+++++    .|+.|++||+++.
T Consensus       208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence            66554 45788999988887754    4789999999864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.8e-23  Score=180.73  Aligned_cols=250  Identities=19%  Similarity=0.314  Sum_probs=191.1

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccc----c----ccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----S----LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~----~----~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~  307 (519)
                      ..+.+++|+|.|.+.|+|+..++++|-.+........    .    ....+.-+.|.+.|.|.+|+|+|.+||+|+.|.+
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~  112 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT  112 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence            3456789999999999999999999987653222110    1    1112334679999999999999999999999999


Q ss_pred             EEEEecccCeee-----ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037          308 VRVWKVIEHERL-----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (519)
Q Consensus       308 I~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (519)
                      |++..+....+.     ..+..+...+.-+.|.......-           ......+..+..+++.+...    +.+++
T Consensus       113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~-----------~il~s~gagdc~iy~tdc~~----g~~~~  177 (350)
T KOG0641|consen  113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGG-----------AILASAGAGDCKIYITDCGR----GQGFH  177 (350)
T ss_pred             EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCc-----------eEEEecCCCcceEEEeecCC----CCcce
Confidence            999877554432     23444555555555544332211           11112233333444443332    56788


Q ss_pred             EeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEeCCCeE
Q 010037          383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKV  453 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (519)
                      .+.+|.+-|..+ ++-++ .+++|+.|++|++||++-..++.++.        .+..|.+++..| .+++|++|-.|...
T Consensus       178 a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc  255 (350)
T KOG0641|consen  178 ALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSC  255 (350)
T ss_pred             eecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCce
Confidence            999999999987 34456 99999999999999999999999885        246799999999 99999999999999


Q ss_pred             EEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       454 ~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      .+||++.++++ .+..|...|.++.|+|...++++++.|..|++-|+.+.
T Consensus       256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            99999999988 58889999999999999999999999999999999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3e-24  Score=209.23  Aligned_cols=202  Identities=21%  Similarity=0.335  Sum_probs=172.8

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEe
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd  312 (519)
                      ..+.+.++.|..||.+||+|...|.|+|+|++...       ....+.+|+.+|..+.|+| ++..|++|++|+.+++||
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHH-------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            34667778999999999999999999999955311       2245789999999999999 456888999999999999


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      +.+...                                                              ...+.+|+..|.
T Consensus       140 ~s~a~v--------------------------------------------------------------~~~l~~htDYVR  157 (487)
T KOG0310|consen  140 LSTAYV--------------------------------------------------------------QAELSGHTDYVR  157 (487)
T ss_pred             cCCcEE--------------------------------------------------------------EEEecCCcceeE
Confidence            976541                                                              234678999999


Q ss_pred             EEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEEe-ec
Q 010037          393 DLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVD-YT  467 (519)
Q Consensus       393 ~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~~-~~  467 (519)
                      |.+|+|..  .++||+.||+|++||+++. ..+..+.|..+|-.+.+-| .|..+++++. ..|+|||+-++ +.+. ..
T Consensus       158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~~~  235 (487)
T KOG0310|consen  158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTSMF  235 (487)
T ss_pred             eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhhhh
Confidence            99999976  8999999999999999987 8888999999999999999 8899998874 58999999965 4443 45


Q ss_pred             cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       468 ~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .|...|||+++..++..|++|+-|+.|++||+.+.+++.
T Consensus       236 ~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~  274 (487)
T KOG0310|consen  236 NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH  274 (487)
T ss_pred             cccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence            599999999999999999999999999999988777653

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=3.2e-23  Score=217.29  Aligned_cols=216  Identities=17%  Similarity=0.289  Sum_probs=163.4

Q ss_pred             CCeeeEeecccceeecCC-CCeEEeeecCCeEEEeeCCcccccccc-ccccceeecCCCCEEEEEEccCCCE-EEEEeCC
Q 010037          229 GAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSLDGQY-LASGGED  305 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fspdg~~-LaSgs~D  305 (519)
                      ..+.+|...+.+++|+|+ +.+||+|+.||+|+||++......... ......+.+|...|.+++|+|++.. |++++.|
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence            345667788889999997 789999999999999999754321111 1122357899999999999998875 5799999


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      ++|+|||+.+++...                                                              .+.
T Consensus       148 gtIrIWDl~tg~~~~--------------------------------------------------------------~i~  165 (568)
T PTZ00420        148 SFVNIWDIENEKRAF--------------------------------------------------------------QIN  165 (568)
T ss_pred             CeEEEEECCCCcEEE--------------------------------------------------------------EEe
Confidence            999999998765321                                                              112


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEE-----EEEeeCCCCEEEEEeCCC----eEE
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS-----VAFNPVDDNYFISGSIDG----KVR  454 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~-----v~fsp~d~~~l~sgs~Dg----~V~  454 (519)
                       |...|.+++|+|+| +|++++.|++|+|||+++++.+..+. |.+.+.+     ..|++ ++.+|++++.|+    +|+
T Consensus       166 -~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        166 -MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMK  243 (568)
T ss_pred             -cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEE
Confidence             44679999999999 88999999999999999999988886 7765443     33457 788899888774    799


Q ss_pred             EEEcCC-CcEEeeccCC---CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037          455 IWEVRR-CQVVDYTDIR---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       455 iwd~~~-~~~~~~~~~~---~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~  508 (519)
                      |||+++ .+++....+.   +.+......++|.++++|+.|+.|++|++..+.+..+.
T Consensus       244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~  301 (568)
T PTZ00420        244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN  301 (568)
T ss_pred             EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence            999995 4555433332   33333334556899999999999999999877655543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.6e-24  Score=222.43  Aligned_cols=208  Identities=22%  Similarity=0.349  Sum_probs=171.1

Q ss_pred             eEeecccceeecCCCCeEEeeecCCeEEEeeCCcccc---------------------------c--cc-----------
Q 010037          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR---------------------------E--LS-----------  272 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~---------------------------~--~~-----------  272 (519)
                      .|.+.|-++.|++||+|||+|+.|+.|+||.+.....                           .  ..           
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5677777899999999999999999999998876000                           0  00           


Q ss_pred             --c-----------ccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCC
Q 010037          273 --S-----------LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL  339 (519)
Q Consensus       273 --~-----------~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (519)
                        .           -.+...|.||.+.|..|.||.++ +|+|++.|.+||+|++...+|+..+                 
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-----------------  406 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-----------------  406 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-----------------
Confidence              0           00123588999999999999765 8999999999999999877764433                 


Q ss_pred             CCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECC
Q 010037          340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG  417 (519)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~  417 (519)
                                                                    .|...|+|++|+|..  ++++|+.|+.||||++.
T Consensus       407 ----------------------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  407 ----------------------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS  440 (712)
T ss_pred             ----------------------------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence                                                          389999999999965  99999999999999999


Q ss_pred             CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe---e-------ccCCCceEEEEEeeCC-CEEE
Q 010037          418 IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---Y-------TDIREIVSAVCYCPDG-KGGI  486 (519)
Q Consensus       418 ~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~---~-------~~~~~~V~~v~~spdg-~~l~  486 (519)
                      ..+.+........|++++|.| +|++.+.|+.+|.+++|+....+.+.   .       ..+. .||.+.|.|.. ..|+
T Consensus       441 d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vL  518 (712)
T KOG0283|consen  441 DKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVL  518 (712)
T ss_pred             cCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEE
Confidence            999888888779999999999 89999999999999999999877652   1       1233 79999999844 4588


Q ss_pred             EEecCCeEEEEECCCCeeee
Q 010037          487 VGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       487 sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +.+.|..|||||+++.+++.
T Consensus       519 VTSnDSrIRI~d~~~~~lv~  538 (712)
T KOG0283|consen  519 VTSNDSRIRIYDGRDKDLVH  538 (712)
T ss_pred             EecCCCceEEEeccchhhhh
Confidence            88999999999997665543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.92  E-value=9.4e-24  Score=198.92  Aligned_cols=262  Identities=13%  Similarity=0.187  Sum_probs=195.0

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+++|.+.|.++.|+.+|.+||+|..+|.|+||+..++.....       +..--..|.-|.|+|.+..|+.|+.||.|-
T Consensus       101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~-------~~~e~~dieWl~WHp~a~illAG~~DGsvW  173 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK-------LDQEVEDIEWLKWHPRAHILLAGSTDGSVW  173 (399)
T ss_pred             EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE-------eecccCceEEEEecccccEEEeecCCCcEE
Confidence            4677889999999999999999999999999999986654332       223446788999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEe--------eccCCce-------------------eeeeeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI--------DVDKEKI-------------------DKTKSLRKSS  362 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-------------------~~~~~~~~s~  362 (519)
                      +|.+.++...+.+..+..+.++-.|.+.+...+...        .......                   .....+.++.
T Consensus       174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence            999999877788888777777766666532221111        1100000                   0001112222


Q ss_pred             CeeEEEeCCcccccc---c-cceeEeeccCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEE
Q 010037          363 DLTCVVLPPKVFRLL---E-KPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV  434 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~---~-~~~~~~~~h~~~V~~l~~sp~~----~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v  434 (519)
                      ++.+++......+..   . ........+...+.|+.+.|..    +.++|+.||+|.|||+...++.+.+.|...|+.+
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l  333 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL  333 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence            222222222211110   0 0111112455566677766654    7789999999999999999999999999999999


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .|-+  ..+|++++.+|+|++||.++++++ .+.+|...|.+++++|+++++++++.|++.+||++.
T Consensus       334 ~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  334 KWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9987  678999999999999999999988 699999999999999999999999999999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=3.5e-24  Score=192.32  Aligned_cols=202  Identities=20%  Similarity=0.337  Sum_probs=178.4

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      |..-|.+++|+.|.++|++|+.+..++|++++......      .++.+|++.|..+.|....+.++++++|++||+||.
T Consensus        99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~  172 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP------KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH  172 (334)
T ss_pred             hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc------hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence            33455568999999999999999999999998655433      467899999999999998889999999999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .++...+.+..                                                               +..|++
T Consensus       173 rTgt~v~sL~~---------------------------------------------------------------~s~VtS  189 (334)
T KOG0278|consen  173 RTGTEVQSLEF---------------------------------------------------------------NSPVTS  189 (334)
T ss_pred             ccCcEEEEEec---------------------------------------------------------------CCCCcc
Confidence            99987655432                                                               456889


Q ss_pred             EEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCC
Q 010037          394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIRE  471 (519)
Q Consensus       394 l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~  471 (519)
                      +.++++|.+++...-+.|++||..+..+++.+..+..|.+..++| +..++++|+.|..++.||..++.-+.  ..+|.+
T Consensus       190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g  268 (334)
T KOG0278|consen  190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG  268 (334)
T ss_pred             eeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence            999999988888888999999999999999999999999999999 77999999999999999999998773  388999


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +|.++.|+|||...++|+.||+|+||.+.-++-.
T Consensus       269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  269 PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999999999999999998765543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.92  E-value=1.7e-23  Score=192.64  Aligned_cols=203  Identities=24%  Similarity=0.420  Sum_probs=173.8

Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc-cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeee
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (519)
                      ..+.+|++.|+.+.|+|+|.+|||||.|..|.+|++. ..+....++.+...+..+.+..+.                ..
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~----------------s~  104 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG----------------SH  104 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC----------------CE
Confidence            3478999999999999999999999999999999964 334444555666655555554443                23


Q ss_pred             eeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEE
Q 010037          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV  434 (519)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v  434 (519)
                      .+..+.+..+..|+..+    ++.++.+++|..-|+.+.-+.-|  ++.+++.|++++|||+++..+++++.....++++
T Consensus       105 i~S~gtDk~v~~wD~~t----G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv  180 (338)
T KOG0265|consen  105 ILSCGTDKTVRGWDAET----GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAV  180 (338)
T ss_pred             EEEecCCceEEEEeccc----ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEE
Confidence            35567788888888876    56688899999999999855556  8889999999999999999999999999999999


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .|.. .+..+++|+.|+.|++||++..... .+.+|.++|+.+..+|+|.++.+-+.|.++++||++-
T Consensus       181 ~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  181 GFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             Eecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence            9998 8899999999999999999998877 5889999999999999999999999999999999973

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3e-23  Score=213.94  Aligned_cols=256  Identities=19%  Similarity=0.293  Sum_probs=203.8

Q ss_pred             hccccccccCC----eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC
Q 010037          220 VKRGWLKKLGA----MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD  295 (519)
Q Consensus       220 ~~~~w~~~~~~----~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd  295 (519)
                      +...|.-+.++    +..|..+|..++|||.+.++++|+.|-.|+||+++..+..       .++.||-+-|..+.|++.
T Consensus        32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-------ftL~GHlDYVRt~~FHhe  104 (1202)
T KOG0292|consen   32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-------FTLLGHLDYVRTVFFHHE  104 (1202)
T ss_pred             eeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh-------hhhccccceeEEeeccCC
Confidence            34456555554    4567888889999999999999999999999999866543       358899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc
Q 010037          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (519)
Q Consensus       296 g~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (519)
                      -.+++|++.|.+|+||++++.+++..+..|...+.|..|.+.....                ++++.+-++.+|+....+
T Consensus       105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI----------------VSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen  105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI----------------VSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE----------------EEecccceEEEEeecchh
Confidence            9999999999999999999999999999999988888887754322                223333344444432111


Q ss_pred             c---------------------c----ccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE---ec
Q 010037          376 L---------------------L----EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV---FS  426 (519)
Q Consensus       376 ~---------------------~----~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~---~~  426 (519)
                      .                     -    .-..+.+.||...|+-++|+|.- .+++|+.|..|++|.++..+.-..   ..
T Consensus       169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg  248 (1202)
T KOG0292|consen  169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG  248 (1202)
T ss_pred             ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc
Confidence            1                     0    01245688999999999999998 999999999999999876554322   24


Q ss_pred             CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      |...|.++-|+| ..+++++.+.|++|+|||+...+.++ +....+..+.++-+|..++++.|. |+-+.+|.+.
T Consensus       249 H~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkle  321 (1202)
T KOG0292|consen  249 HYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLE  321 (1202)
T ss_pred             ccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence            999999999999 89999999999999999999988874 555677889999999999777665 5455566654

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=1.7e-22  Score=211.78  Aligned_cols=187  Identities=18%  Similarity=0.322  Sum_probs=152.0

Q ss_pred             eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEecccCeeeceeeccCCCCce
Q 010037          253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC  331 (519)
Q Consensus       253 gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~  331 (519)
                      |+.++.|++|+.....       ....+.+|.++|.+++|+|+ +.+||||+.||+|+|||+.++.....          
T Consensus        50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----------  112 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----------  112 (568)
T ss_pred             CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----------
Confidence            6678899999876432       23457899999999999996 78999999999999999975431000          


Q ss_pred             EEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCC
Q 010037          332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADK  409 (519)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg  409 (519)
                                                                  ....++..+.+|...|.+++|+|++  .|++++.|+
T Consensus       113 --------------------------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420        113 --------------------------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             --------------------------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence                                                        0012244567899999999999988  567999999


Q ss_pred             cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEE-----EEEeeCCC
Q 010037          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA-----VCYCPDGK  483 (519)
Q Consensus       410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~-----v~~spdg~  483 (519)
                      +|+|||+++++.+..+.|...|++++|+| ++.+|++++.|++|+|||+++++.+ .+..|.+.+..     ..|++++.
T Consensus       149 tIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~  227 (568)
T PTZ00420        149 FVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN  227 (568)
T ss_pred             eEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence            99999999999888888888999999999 9999999999999999999999877 46677765443     23458999


Q ss_pred             EEEEEecCC----eEEEEECCC
Q 010037          484 GGIVGTMTG----NCRFYDIKG  501 (519)
Q Consensus       484 ~l~sgs~dg----~v~iwdl~~  501 (519)
                      +|++++.++    .|+|||+++
T Consensus       228 ~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        228 YILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEEEEEcCCCCccEEEEEECCC
Confidence            999988775    799999985

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=8.9e-24  Score=190.26  Aligned_cols=239  Identities=18%  Similarity=0.243  Sum_probs=192.5

Q ss_pred             ecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEec
Q 010037          236 DRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       236 ~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~  313 (519)
                      |..-.++|+++. +.+++++.||.+++||......      +.+.++.|...|.++.|++ ++..+++++-|++|++|+.
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~  134 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP  134 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecC
Confidence            334457888864 5778899999999999765443      3346788999999999999 5667888899999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      ..++.+.++..+..-+....|.+...+.+.               ..+.++.+.+|+.+.   .++++. +..|...|+|
T Consensus       135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa---------------s~Sgd~~l~lwdvr~---~gk~~~-i~ah~~Eil~  195 (311)
T KOG0277|consen  135 NRPNSVQTFNGHNSCIYQAAFSPHIPNLFA---------------SASGDGTLRLWDVRS---PGKFMS-IEAHNSEILC  195 (311)
T ss_pred             CCCcceEeecCCccEEEEEecCCCCCCeEE---------------EccCCceEEEEEecC---CCceeE-EEeccceeEe
Confidence            988888888776666656666666554433               456777888888543   355555 8889999999


Q ss_pred             EEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eec
Q 010037          394 LSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYT  467 (519)
Q Consensus       394 l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~  467 (519)
                      +.|++-+  .|+||+.|+.|+.||++.- .++..+ .|.-.|..|+|+|....+|++++.|=++||||...+.-.  ...
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~  275 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD  275 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence            9999976  9999999999999999874 455555 499999999999988889999999999999999865433  466


Q ss_pred             cCCCceEEEEEee-CCCEEEEEecCCeEEEEEC
Q 010037          468 DIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       468 ~~~~~V~~v~~sp-dg~~l~sgs~dg~v~iwdl  499 (519)
                      .|..-|..+.|++ ++.++|..+.|+.++||+.
T Consensus       276 ~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  276 HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccceEEeccccccccCceeeecccccceeeecc
Confidence            7888899999998 6678999999999999984

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=3.3e-23  Score=210.63  Aligned_cols=237  Identities=22%  Similarity=0.429  Sum_probs=186.6

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc----
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE----  315 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~----  315 (519)
                      +..|-|.++++++|...|.+.|+++...       ....++.+|++.|+.|+.+||+..++|||.|.+|++||+.-    
T Consensus       417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~  489 (888)
T KOG0306|consen  417 ASKFVPGDRYIVLGTKNGELQVFDLASA-------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV  489 (888)
T ss_pred             EEEecCCCceEEEeccCCceEEEEeehh-------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence            4679999999999999999999998732       33445789999999999999999999999999999999732    


Q ss_pred             -Ceeeceeecc-------CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          316 -HERLDGFDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       316 -~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                       +...+.+...       +..+.|+.++|+..  +.++.+              .+.++.++-...+    +....+.||
T Consensus       490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk--~LaVsL--------------LdnTVkVyflDtl----KFflsLYGH  549 (888)
T KOG0306|consen  490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK--LLAVSL--------------LDNTVKVYFLDTL----KFFLSLYGH  549 (888)
T ss_pred             CcccceeeeeccceEEeccccEEEEEEcCCCc--EEEEEe--------------ccCeEEEEEecce----eeeeeeccc
Confidence             1111111111       12233444443332  222111              1223333322222    335678999


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-  464 (519)
                      .-+|.||..+|++ .++|||.|++|++|-+.-|.|.+.+ .|.+.|.+|.|-| ...+|.+++.|+.|+-||-.+...+ 
T Consensus       550 kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq  628 (888)
T KOG0306|consen  550 KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQ  628 (888)
T ss_pred             ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhhe
Confidence            9999999999999 9999999999999999999998877 5999999999999 8999999999999999999987766 


Q ss_pred             eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      .+.+|...|++++.+|+|.++++++.|.+|++|....-.+
T Consensus       629 ~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  629 KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             eeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence            6889999999999999999999999999999999765443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.9e-23  Score=184.14  Aligned_cols=206  Identities=19%  Similarity=0.393  Sum_probs=175.8

Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeee
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (519)
                      ..+..|+++|..+.|+-||+|.++|+.|.+|++|+...+.+++++..+...+.-.....+                ....
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D----------------nskf   74 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD----------------NSKF   74 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc----------------cccc
Confidence            457889999999999999999999999999999999999999998877665544433322                2334


Q ss_pred             eccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEec-CCCcEEE
Q 010037          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTS  433 (519)
Q Consensus       358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~--~~~~~~~-h~~~V~~  433 (519)
                      ..++.+..+.+|+...    ++.++.+.+|.+.|+.++|+.+. .+++|+.|.+|++||.++.  ++++++. ..+.|.+
T Consensus        75 ~s~GgDk~v~vwDV~T----Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S  150 (307)
T KOG0316|consen   75 ASCGGDKAVQVWDVNT----GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS  150 (307)
T ss_pred             ccCCCCceEEEEEccc----CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence            5677888999999887    45688999999999999999988 9999999999999998764  6777776 7788999


Q ss_pred             EEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      |..+   +..+++|+.||++|.||++.++... .....+|++++|++||+.+++++.|+++++.|-.+|++.+.
T Consensus       151 i~v~---~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s  220 (307)
T KOG0316|consen  151 IDVA---EHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS  220 (307)
T ss_pred             EEec---ccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence            9985   5789999999999999999998772 22356899999999999999999999999999999988654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=212.14  Aligned_cols=239  Identities=21%  Similarity=0.336  Sum_probs=198.7

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      .+.+..|+  +.++++++.+++|++|+.........      .+.+|.+.|+++++..-+.+|++|+.|.++++||..++
T Consensus       210 ~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  210 VVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             hhhhheee--cCeEEecCCCceeEEeecccceEEEe------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence            33345566  77899999999999999875544322      37899999999999887889999999999999999999


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      ++...+..+...+.++....                  .....++.+.++.+|+...    +..++.+.+|.++|.++..
T Consensus       282 ~C~~~l~gh~stv~~~~~~~------------------~~~~sgs~D~tVkVW~v~n----~~~l~l~~~h~~~V~~v~~  339 (537)
T KOG0274|consen  282 ECTHSLQGHTSSVRCLTIDP------------------FLLVSGSRDNTVKVWDVTN----GACLNLLRGHTGPVNCVQL  339 (537)
T ss_pred             cEEEEecCCCceEEEEEccC------------------ceEeeccCCceEEEEeccC----cceEEEeccccccEEEEEe
Confidence            99999987777666554322                  2234477888898888873    5567888889999999999


Q ss_pred             cCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEE-eeccCCCce
Q 010037          397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-DYTDIREIV  473 (519)
Q Consensus       397 sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~-~~~~~~~~V  473 (519)
                      + ..++++|+.|++|++||+.++++++.+. |...|+++.+.+ . .++++|+.|++|++||+++. +++ .+..|...+
T Consensus       340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v  416 (537)
T KOG0274|consen  340 D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV  416 (537)
T ss_pred             c-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence            8 4499999999999999999999999997 999999998865 3 89999999999999999999 777 577777777


Q ss_pred             EEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecccc
Q 010037          474 SAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTT  510 (519)
Q Consensus       474 ~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~  510 (519)
                      ..+.+  .++.|++++.||.|++||..++++.+.-..
T Consensus       417 ~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  417 SSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             ccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence            55544  677999999999999999999887765444

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=6.6e-23  Score=198.52  Aligned_cols=216  Identities=19%  Similarity=0.297  Sum_probs=176.6

Q ss_pred             cccCCeeeEeecccceeecCCCC-eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEe
Q 010037          226 KKLGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG  303 (519)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs  303 (519)
                      ++-..+.+|.+....++|++... .|++|+.|++|.+||+.....+-........+.+|...|..++|++ +...|++++
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~  247 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG  247 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence            33445677777566688888654 7889999999999999876665333444556899999999999999 567899999


Q ss_pred             CCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      .|+.+.|||++++.                                                            .++.+.
T Consensus       248 dd~~L~iwD~R~~~------------------------------------------------------------~~~~~~  267 (422)
T KOG0264|consen  248 DDGKLMIWDTRSNT------------------------------------------------------------SKPSHS  267 (422)
T ss_pred             CCCeEEEEEcCCCC------------------------------------------------------------CCCccc
Confidence            99999999998632                                                            123445


Q ss_pred             eeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037          384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~  459 (519)
                      ..+|.+.|.|++|+|-+  .||||+.|++|+|||++.- +++.++. |...|.+|.|+|.....||+++.|+.+.|||+.
T Consensus       268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            67899999999999977  9999999999999999874 4566665 999999999999889999999999999999986


Q ss_pred             CC-c--------------EEeeccCCCceEEEEEeeCCCE-EEEEecCCeEEEEECCC
Q 010037          460 RC-Q--------------VVDYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       460 ~~-~--------------~~~~~~~~~~V~~v~~spdg~~-l~sgs~dg~v~iwdl~~  501 (519)
                      .- +              +....+|...|..+.|+|...+ |++.+.|+.+.||.+..
T Consensus       348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            41 1              1245688999999999998765 66788999999999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.8e-22  Score=203.90  Aligned_cols=238  Identities=17%  Similarity=0.329  Sum_probs=199.3

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      .+.+.++.|+++|.+||+|..+|.|.|||....+..       ..+.+ |...|-+++|+  +..|.+|+.|+.|..+|+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-------~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv  287 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-------RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV  287 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc-------ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence            356778999999999999999999999998754432       33556 99999999998  678999999999999999


Q ss_pred             ccCeeece-eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          314 IEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      +..+.... +..|...+-.+.|+.+.                .....++.+..+.+|+.    ....++..+..|.+.|.
T Consensus       288 R~~~~~~~~~~~H~qeVCgLkws~d~----------------~~lASGgnDN~~~Iwd~----~~~~p~~~~~~H~aAVK  347 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQEVCGLKWSPDG----------------NQLASGGNDNVVFIWDG----LSPEPKFTFTEHTAAVK  347 (484)
T ss_pred             ecchhhhhhhhcccceeeeeEECCCC----------------CeeccCCCccceEeccC----CCccccEEEeccceeee
Confidence            88876655 55566666566665544                23456778888999988    33567888999999999


Q ss_pred             EEEEcCCC--eEEEEe--CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEE--EeCCCeEEEEEcCCCcEE-e
Q 010037          393 DLSWSKNG--FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRCQVV-D  465 (519)
Q Consensus       393 ~l~~sp~~--~L~sgs--~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~s--gs~Dg~V~iwd~~~~~~~-~  465 (519)
                      .++|+|-.  +||+|+  .|++|++||+.++..+........|.+|.|++ ..+-|++  |..+..|.||+..+.+.+ .
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccceeee
Confidence            99999965  888874  79999999999999999999999999999999 5554554  345778999999997766 6


Q ss_pred             eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      +.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus       427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            8999999999999999999999999999999998763

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=2e-23  Score=196.45  Aligned_cols=249  Identities=16%  Similarity=0.262  Sum_probs=196.3

Q ss_pred             cCCeeeEeecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      .+.+.+|.++|.+++=+|.. ..+|+|+.||.|+|||+....       +...+.+|.+.|..|++..  ..++++|.|.
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-------~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK  129 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-------CIRTFKAHEGLVRGICVTQ--TSFFTVGDDK  129 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-------hhheeecccCceeeEEecc--cceEEecCCc
Confidence            45689999999999999998 789999999999999987433       4456899999999999986  5688999999


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      +|+.|.+... .+.++....              .+..++     .........+....+-+|+...    ..|+..+.-
T Consensus       130 tvK~wk~~~~-p~~tilg~s--------------~~~gId-----h~~~~~~FaTcGe~i~IWD~~R----~~Pv~smsw  185 (433)
T KOG0268|consen  130 TVKQWKIDGP-PLHTILGKS--------------VYLGID-----HHRKNSVFATCGEQIDIWDEQR----DNPVSSMSW  185 (433)
T ss_pred             ceeeeeccCC-cceeeeccc--------------cccccc-----cccccccccccCceeeeccccc----CCccceeec
Confidence            9999998552 222221100              000000     0011112233344566666643    467778887


Q ss_pred             cCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-E
Q 010037          387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-V  463 (519)
Q Consensus       387 h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-~  463 (519)
                      ....|.++.|+|..  .|++|..|+.|.|||++++.+++.+...-.-+.|+|+| ....|.+|+.|..++.||++.-+ .
T Consensus       186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p  264 (433)
T KOG0268|consen  186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRP  264 (433)
T ss_pred             CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhccc
Confidence            88899999999977  88899999999999999999999988778889999999 88899999999999999999754 3


Q ss_pred             E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecccc
Q 010037          464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTT  510 (519)
Q Consensus       464 ~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~  510 (519)
                      + ...+|...|..+.|+|.|+-+++|+.|.+|+||.+..++.-++...
T Consensus       265 ~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht  312 (433)
T KOG0268|consen  265 LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT  312 (433)
T ss_pred             chhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH
Confidence            3 5788999999999999999999999999999999988765554433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.90  E-value=6.7e-24  Score=198.34  Aligned_cols=251  Identities=20%  Similarity=0.362  Sum_probs=193.0

Q ss_pred             hhhhhhcccccccc----CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEE
Q 010037          215 DAKRKVKRGWLKKL----GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM  290 (519)
Q Consensus       215 ~~~~~~~~~w~~~~----~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l  290 (519)
                      +.+-...+.|.+..    ..+.+|...+-|  +.-+.+.+++|+.|.+|+|||++.+.       +.+++.+|...|..+
T Consensus       213 GlrDnTikiWD~n~~~c~~~L~GHtGSVLC--Lqyd~rviisGSSDsTvrvWDv~tge-------~l~tlihHceaVLhl  283 (499)
T KOG0281|consen  213 GLRDNTIKIWDKNSLECLKILTGHTGSVLC--LQYDERVIVSGSSDSTVRVWDVNTGE-------PLNTLIHHCEAVLHL  283 (499)
T ss_pred             ccccCceEEeccccHHHHHhhhcCCCcEEe--eeccceEEEecCCCceEEEEeccCCc-------hhhHHhhhcceeEEE
Confidence            34444556776654    335666665554  44566799999999999999998554       345678899999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEecccCeee---ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE
Q 010037          291 KFSLDGQYLASGGEDGTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV  367 (519)
Q Consensus       291 ~fspdg~~LaSgs~Dg~I~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  367 (519)
                      .|+  ..+++|++.|.+|.+||+.....+   ..+..+...+..+             .++.     ...++++++.++.
T Consensus       284 rf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV-------------dfd~-----kyIVsASgDRTik  343 (499)
T KOG0281|consen  284 RFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV-------------DFDD-----KYIVSASGDRTIK  343 (499)
T ss_pred             EEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee-------------cccc-----ceEEEecCCceEE
Confidence            997  459999999999999999765422   2222222222222             2221     2456778888888


Q ss_pred             EeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 010037          368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFIS  446 (519)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~s  446 (519)
                      +|+..+.    ..+.++.+|...|.|+.+... ++++|+.|.+|++||+.+|.+++.+. |..-|.||.|   +...+++
T Consensus       344 vW~~st~----efvRtl~gHkRGIAClQYr~r-lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVS  415 (499)
T KOG0281|consen  344 VWSTSTC----EFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVS  415 (499)
T ss_pred             EEeccce----eeehhhhcccccceehhccCe-EEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeee
Confidence            8887763    457889999999999987422 89999999999999999999999996 9999999999   5678999


Q ss_pred             EeCCCeEEEEEcCCCcE---------E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          447 GSIDGKVRIWEVRRCQV---------V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       447 gs~Dg~V~iwd~~~~~~---------~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      |..||+|+|||+..+.-         + ....|.+.|..+.|  |...+++++.|.+|.|||.-++.-
T Consensus       416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence            99999999999987532         1 45678889999998  667899999999999999876543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.1e-22  Score=182.29  Aligned_cols=258  Identities=18%  Similarity=0.229  Sum_probs=197.2

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I  308 (519)
                      .+.|.+.+..+...-.|+.||+++.|++|+|+.+.....    .+...+|.||.+||+.++|..  -|.+||+++.||.|
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV   82 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV   82 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence            456778888888888999999999999999999986553    234457899999999999966  89999999999999


Q ss_pred             EEEecccCe--eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       309 ~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      .||.-..++  .......+...+.++.+.+.....++++....+.+...            .++....   .........
T Consensus        83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl------------~~~~~g~---w~t~ki~~a  147 (299)
T KOG1332|consen   83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL------------TYDSSGG---WTTSKIVFA  147 (299)
T ss_pred             EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE------------EEcCCCC---ccchhhhhc
Confidence            999988774  33455667778889999998877776655444433221            1111100   011234577


Q ss_pred             cCCCeeEEEEcCCC---------------eEEEEeCCCcEEEEECCCCeEE--EEe-cCCCcEEEEEEeeCCC---CEEE
Q 010037          387 HSSEVLDLSWSKNG---------------FLLSSSADKTVRLWQVGIDRCL--RVF-SHNNYVTSVAFNPVDD---NYFI  445 (519)
Q Consensus       387 h~~~V~~l~~sp~~---------------~L~sgs~Dg~V~lWdl~~~~~~--~~~-~h~~~V~~v~fsp~d~---~~l~  445 (519)
                      |.-.|++++|.|-.               .|++|+.|..|+||+...++.+  +++ .|.+.|+.++|.|..+   .+++
T Consensus       148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            99999999999851               5999999999999999887433  223 3999999999999432   4899


Q ss_pred             EEeCCCeEEEEEcCCC----cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC-Ceeeec
Q 010037          446 SGSIDGKVRIWEVRRC----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG-MQIFDL  507 (519)
Q Consensus       446 sgs~Dg~V~iwd~~~~----~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~-~~l~~~  507 (519)
                      ++++||+|.||-.+..    +...+......+..+.|++.|+.|++++.|+.|.+|.-.. |+-+++
T Consensus       228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v  294 (299)
T KOG1332|consen  228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEV  294 (299)
T ss_pred             EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEc
Confidence            9999999999987732    1112445678899999999999999999999999997543 344443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=4.8e-23  Score=201.54  Aligned_cols=224  Identities=17%  Similarity=0.241  Sum_probs=174.3

Q ss_pred             cccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (519)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D  305 (519)
                      .+.-.+.++...|.++++.|.|-.+++|+.|..|++||+......+..+...+.-..  ..|+++.|++.|..|+..+..
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecCCCCeEEEEecC
Confidence            344456677778888999999999999999999999999977766555444333333  469999999999988888888


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      ..++|+|-...+..........                                                  -..+..-+
T Consensus       236 aqakl~DRdG~~~~e~~KGDQY--------------------------------------------------I~Dm~nTK  265 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQY--------------------------------------------------IRDMYNTK  265 (641)
T ss_pred             cceeEEccCCceeeeeeccchh--------------------------------------------------hhhhhccC
Confidence            8999999754443222211000                                                  01133457


Q ss_pred             ccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEec------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      ||...++|.+|+|..  .++|++.|+++||||+... +.++++.      ..-.++.++|+| ++..||+|+.||.|.+|
T Consensus       266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeee
Confidence            899999999999987  9999999999999999764 4445554      345789999999 99999999999999999


Q ss_pred             EcCCCcEE----eeccCCC--ceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          457 EVRRCQVV----DYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       457 d~~~~~~~----~~~~~~~--~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      +.....+.    ....|..  .|++|.|++||++|++-+.|+++++||++..
T Consensus       345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            98654322    2344554  8999999999999999999999999999853

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=2.7e-22  Score=194.23  Aligned_cols=253  Identities=22%  Similarity=0.305  Sum_probs=202.7

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccc--cc--------ccccccee-ecCCCCEEEEEEccCC
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--LS--------SLYTGQEF-LAHEGSILTMKFSLDG  296 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~--~~--------~~~~~~~l-~~H~~~I~~l~fspdg  296 (519)
                      +..+..|.-.+.+++++|++++.++++.+++|.=|++..+...  +.        .....+.- .+|.+.|.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4456667778888999999999999999999999998766533  11        01111112 3899999999999999


Q ss_pred             CEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc
Q 010037          297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (519)
Q Consensus       297 ~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (519)
                      +|||+|+.|..|.||+.++.+.++.+..+...+.++.|-.....                .+..+.+..+.+|+...+.+
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~----------------lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE----------------LYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccc----------------eeeeecCCceEEEehhHhHH
Confidence            99999999999999999999999988888888877777544322                23455666777777665543


Q ss_pred             cccceeEeeccCCCeeEEEEcCCCeEE-EEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037          377 LEKPLHEFQGHSSEVLDLSWSKNGFLL-SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (519)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~~~L~-sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i  455 (519)
                          +.++.+|.+.|..|....-..++ .|+.|+++++|++.....+.-..+.+.+-|++|-  +...|++|+.+|.|.+
T Consensus       279 ----vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  279 ----VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIAL  352 (479)
T ss_pred             ----HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEE
Confidence                56789999999999988777555 5559999999999766666666688899999997  5788999999999999


Q ss_pred             EEcCCCcEEee--cc-----------CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          456 WEVRRCQVVDY--TD-----------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       456 wd~~~~~~~~~--~~-----------~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      |++.+.+++..  ..           ++.+|++++..|...++++|+.+|.|++|-+.++
T Consensus       353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            99998877631  11           1238999999999999999999999999999987

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=1.3e-22  Score=193.85  Aligned_cols=239  Identities=18%  Similarity=0.278  Sum_probs=189.2

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~  307 (519)
                      .+++.+....+..+.|.+++.++++++.|+.+++|++....       ...+|.+|++.|+++.|......+++|+.|.+
T Consensus       212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt  284 (459)
T KOG0288|consen  212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT  284 (459)
T ss_pred             hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-------hhhhhcccccceeeehhhccccceeeccccch
Confidence            34566666778889999999999999999999999988433       33468899999999999987767999999999


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |++||+....|.+++.......   .+...                ....+.+..+..+.+|+.+..    .+......+
T Consensus       285 iK~WDl~k~~C~kt~l~~S~cn---DI~~~----------------~~~~~SgH~DkkvRfwD~Rs~----~~~~sv~~g  341 (459)
T KOG0288|consen  285 IKLWDLQKAYCSKTVLPGSQCN---DIVCS----------------ISDVISGHFDKKVRFWDIRSA----DKTRSVPLG  341 (459)
T ss_pred             hhhhhhhhhheecccccccccc---ceEec----------------ceeeeecccccceEEEeccCC----ceeeEeecC
Confidence            9999999988776653322111   11000                122344555666777776542    334445555


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      . .|+++..++++ .|++++.|.++.+.|+++.....++.     ....++.++|+| ++.|+++|+.||.|+||++.++
T Consensus       342 g-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  342 G-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             c-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCc
Confidence            4 89999999999 99999999999999999999988885     344589999999 9999999999999999999999


Q ss_pred             cEEe-ec--cCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          462 QVVD-YT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       462 ~~~~-~~--~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      ++.. ..  .....|++++|+|.|.+|++++.++.+.+|.
T Consensus       420 KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  420 KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            8774 22  2333699999999999999999999999993

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=2.8e-22  Score=194.18  Aligned_cols=231  Identities=19%  Similarity=0.294  Sum_probs=179.1

Q ss_pred             EeecccceeecCCCC-eEEeeecCCeEEEeeCCccccccc---cccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcE
Q 010037          234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTV  308 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I  308 (519)
                      |...|+.+..-|... .+|+++..+.|.|||+.+......   .......+.+|++.-..|.|++.. -+|++|+.|++|
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i  202 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI  202 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence            344455566667655 556688899999999986554332   223334789999988899999954 489999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      ++||+........                                                       ...+...+.+|.
T Consensus       203 ~lwdi~~~~~~~~-------------------------------------------------------~~~p~~~~~~h~  227 (422)
T KOG0264|consen  203 CLWDINAESKEDK-------------------------------------------------------VVDPKTIFSGHE  227 (422)
T ss_pred             EEEeccccccCCc-------------------------------------------------------cccceEEeecCC
Confidence            9999965432100                                                       013356688999


Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCC--CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC--
Q 010037          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--  461 (519)
Q Consensus       389 ~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~--~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~--  461 (519)
                      ..|.+++|++..  ++++++.|+.+.|||+++  .++.+.. .|...|+|++|+|.++.+||+|+.|++|++||+|+-  
T Consensus       228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~  307 (422)
T KOG0264|consen  228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK  307 (422)
T ss_pred             cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence            999999999976  999999999999999995  4444444 399999999999999999999999999999999984  


Q ss_pred             cEEeeccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCCeeee------ccccceeEEecCC
Q 010037          462 QVVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQIFD------LSTTAYLFALLGH  519 (519)
Q Consensus       462 ~~~~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~l~~------~~~~~~~~~l~GH  519 (519)
                      .+..+..|...|..|.|+|.. ..||+++.|+.+.|||+..-.-.+      -.+-+.+|...||
T Consensus       308 ~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH  372 (422)
T KOG0264|consen  308 PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH  372 (422)
T ss_pred             CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCc
Confidence            344789999999999999965 578889999999999997422111      2344567888888

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.89  E-value=1.1e-22  Score=195.51  Aligned_cols=194  Identities=23%  Similarity=0.354  Sum_probs=170.0

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~  320 (519)
                      +...|....+++|+.|..+.++|.....       ....+.||...|+.+.|+|+...+++++.|..|+||.+.....  
T Consensus       225 ld~~~s~~~ilTGG~d~~av~~d~~s~q-------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--  295 (506)
T KOG0289|consen  225 LDIIPSSSKILTGGEDKTAVLFDKPSNQ-------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--  295 (506)
T ss_pred             EeecCCCCcceecCCCCceEEEecchhh-------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence            4455556899999999999999987433       3356899999999999999999999999999999999754331  


Q ss_pred             eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC
Q 010037          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (519)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  400 (519)
                                                                                  ......|..+|+.+..+|.|
T Consensus       296 ------------------------------------------------------------~~~~~~h~~~V~~ls~h~tg  315 (506)
T KOG0289|consen  296 ------------------------------------------------------------PTSSRPHEEPVTGLSLHPTG  315 (506)
T ss_pred             ------------------------------------------------------------ccccccccccceeeeeccCC
Confidence                                                                        12245689999999999999


Q ss_pred             -eEEEEeCCCcEEEEECCCCeEEEEecCC---CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEE
Q 010037          401 -FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA  475 (519)
Q Consensus       401 -~L~sgs~Dg~V~lWdl~~~~~~~~~~h~---~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~  475 (519)
                       ||++++.|++..+.|++++.++....+.   -.+++.+||| ||.+|.+|..||.|+|||+..+..+ .+.+|.++|.+
T Consensus       316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~  394 (506)
T KOG0289|consen  316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA  394 (506)
T ss_pred             cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence             9999999999999999999999888764   3489999999 9999999999999999999988766 68899999999


Q ss_pred             EEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          476 VCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       476 v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ++|+.+|.+|++++.|+.|++||++..+.
T Consensus       395 i~FsENGY~Lat~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  395 ISFSENGYWLATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             EEeccCceEEEEEecCCeEEEEEehhhcc
Confidence            99999999999999999999999986554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.89  E-value=4e-23  Score=201.08  Aligned_cols=170  Identities=26%  Similarity=0.513  Sum_probs=154.3

Q ss_pred             ccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceee
Q 010037          276 TGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK  354 (519)
Q Consensus       276 ~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (519)
                      ....+.+|+..|.++.|.| .+.+|++|+.|+.|+||++....                                     
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------------------------------------  248 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------------------------------------  248 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-------------------------------------
Confidence            3456889999999999999 89999999999999999985521                                     


Q ss_pred             eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEE
Q 010037          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTS  433 (519)
Q Consensus       355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~  433 (519)
                                              ..++++.+|..+|.+++|+++| .+++++.|+.|++||+++|+++..|.....++|
T Consensus       249 ------------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~c  304 (503)
T KOG0282|consen  249 ------------------------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTC  304 (503)
T ss_pred             ------------------------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCcee
Confidence                                    2367789999999999999999 999999999999999999999999999999999


Q ss_pred             EEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +.|+|.+.+.|++|+.|+.|+.||++++++++ +..|-+.|..+.|-++|+++++.+.|++++||+....-.++
T Consensus       305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik  378 (503)
T KOG0282|consen  305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK  378 (503)
T ss_pred             eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence            99999555999999999999999999999884 67788999999999999999999999999999998664443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.89  E-value=4.4e-22  Score=208.01  Aligned_cols=240  Identities=22%  Similarity=0.387  Sum_probs=202.2

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +.+|.+.+.++++...+..|++|+.|.+++|||...+.       +...+.+|...|.++...  +.++++|+.|.+|++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV  315 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV  315 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------EEEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence            56677888888998889999999999999999987544       445688999999999875  557889999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      |++.++.++..+..+...+.++...                  ....+.++.++.+.+|+...    .++++.+.+|...
T Consensus       316 W~v~n~~~l~l~~~h~~~V~~v~~~------------------~~~lvsgs~d~~v~VW~~~~----~~cl~sl~gH~~~  373 (537)
T KOG0274|consen  316 WDVTNGACLNLLRGHTGPVNCVQLD------------------EPLLVSGSYDGTVKVWDPRT----GKCLKSLSGHTGR  373 (537)
T ss_pred             EeccCcceEEEeccccccEEEEEec------------------CCEEEEEecCceEEEEEhhh----ceeeeeecCCcce
Confidence            9999999988887766666666544                  12335677778899998884    5779999999999


Q ss_pred             eeEEEEcCCCeEEEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec-
Q 010037          391 VLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-  467 (519)
Q Consensus       391 V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~-  467 (519)
                      |.++.+.+..++++|+.|++|++||+.+. +|+.++. |...|..+.+   .+++|++++.|++|++||..+++++... 
T Consensus       374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             EEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeec
Confidence            99999888569999999999999999999 9999987 7777877776   5689999999999999999999988543 


Q ss_pred             c-CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          468 D-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       468 ~-~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      . +...|+++++.  ...+++++.||.+++||++++++..
T Consensus       451 ~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  451 GRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence            3 45788888876  4578999999999999999988765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=2.5e-21  Score=216.51  Aligned_cols=223  Identities=15%  Similarity=0.247  Sum_probs=170.6

Q ss_pred             CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee--------ceeeccCC
Q 010037          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL--------DGFDVQDT  327 (519)
Q Consensus       256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~--------~~~~~~~~  327 (519)
                      +|.+++|+.......  .......+..|.+.|.+++|+|+|++||+|+.|+.|+||++......        ..+. ...
T Consensus       457 ~gl~~~~~~~~~~~~--~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~  533 (793)
T PLN00181        457 EGLCKYLSFSKLRVK--ADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRS  533 (793)
T ss_pred             hhhhhhhcccceEEE--EeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccC
Confidence            677888887643321  11222346679999999999999999999999999999997542100        0000 011


Q ss_pred             CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC-CC-eEEEE
Q 010037          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSS  405 (519)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~-~L~sg  405 (519)
                      .+..+.|.+..               ....+.++.++.+.+|+...    .+.+..+.+|...|++++|+| ++ +|++|
T Consensus       534 ~v~~l~~~~~~---------------~~~las~~~Dg~v~lWd~~~----~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg  594 (793)
T PLN00181        534 KLSGICWNSYI---------------KSQVASSNFEGVVQVWDVAR----SQLVTEMKEHEKRVWSIDYSSADPTLLASG  594 (793)
T ss_pred             ceeeEEeccCC---------------CCEEEEEeCCCeEEEEECCC----CeEEEEecCCCCCEEEEEEcCCCCCEEEEE
Confidence            11222222111               12235666788888888764    345677889999999999997 55 99999


Q ss_pred             eCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc--EEeeccCCCceEEEEEeeCCC
Q 010037          406 SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGK  483 (519)
Q Consensus       406 s~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~v~~spdg~  483 (519)
                      +.|++|++||++++.++..+.+...|.++.|++.++.+|++|+.||.|++||+++.+  ...+..|...|+++.|. ++.
T Consensus       595 s~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~  673 (793)
T PLN00181        595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS  673 (793)
T ss_pred             cCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC
Confidence            999999999999999998888778899999976579999999999999999998865  23577899999999997 788


Q ss_pred             EEEEEecCCeEEEEECCC
Q 010037          484 GGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       484 ~l~sgs~dg~v~iwdl~~  501 (519)
                      +|++++.|+.|+|||+..
T Consensus       674 ~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        674 TLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             EEEEEECCCEEEEEeCCC
Confidence            999999999999999974

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.4e-21  Score=178.61  Aligned_cols=232  Identities=20%  Similarity=0.291  Sum_probs=182.8

Q ss_pred             eEEeeecCCeEEEeeCCccccccc-----cccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceee
Q 010037          249 ELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (519)
Q Consensus       249 ~lasgs~dg~I~vw~~~~~~~~~~-----~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~  323 (519)
                      .+++|+....|.=+++........     .+...-.+.+|.++|++++.+  +.|+|||+.|-+|+|||+.+...+..+-
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence            467888888888887765442111     122233567899999999985  8999999999999999999998888888


Q ss_pred             ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE
Q 010037          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (519)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L  402 (519)
                      .+...++++.|......              ...+.++.++.+.+|+...|.    .+..+++|.+.|+.++.+|.+ +.
T Consensus        81 ~HagsitaL~F~~~~S~--------------shLlS~sdDG~i~iw~~~~W~----~~~slK~H~~~Vt~lsiHPS~KLA  142 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSK--------------SHLLSGSDDGHIIIWRVGSWE----LLKSLKAHKGQVTDLSIHPSGKLA  142 (362)
T ss_pred             ccccceEEEEecCCcch--------------hheeeecCCCcEEEEEcCCeE----EeeeecccccccceeEecCCCceE
Confidence            88777777777654321              255788899999999999884    478899999999999999999 77


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEecCCCc----------------------------------------EEEEEEeeCCCC
Q 010037          403 LSSSADKTVRLWQVGIDRCLRVFSHNNY----------------------------------------VTSVAFNPVDDN  442 (519)
Q Consensus       403 ~sgs~Dg~V~lWdl~~~~~~~~~~h~~~----------------------------------------V~~v~fsp~d~~  442 (519)
                      ++.+.|+.+++||+-.++.-..+.....                                        +.|+.|.  ++.
T Consensus       143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~  220 (362)
T KOG0294|consen  143 LSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGS  220 (362)
T ss_pred             EEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCc
Confidence            8889999999999877654433332222                                        3333333  577


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE--eeCCCEEEEEecCCeEEEEECCCC
Q 010037          443 YFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY--CPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       443 ~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~--spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      +|++|..|+.|++||.....+. .+.+|...|-++.+  .|++.+|++++.||.|+|||+...
T Consensus       221 ~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  221 ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            8889999999999999987666 58889999999884  467899999999999999999865

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.89  E-value=1.1e-21  Score=185.95  Aligned_cols=257  Identities=19%  Similarity=0.267  Sum_probs=183.6

Q ss_pred             eeeEeecccceeec---CCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037          231 MARIIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (519)
Q Consensus       231 ~~~~~~~~~~~~~s---p~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~  307 (519)
                      +.+|.+++.++++.   +....+++++.|.++++|.++...........   -.||..+|.++...++|..+++|+.|..
T Consensus       140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---~~GHk~~V~sVsv~~sgtr~~SgS~D~~  216 (423)
T KOG0313|consen  140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV---CRGHKRSVDSVSVDSSGTRFCSGSWDTM  216 (423)
T ss_pred             EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH---hcccccceeEEEecCCCCeEEeecccce
Confidence            44455555544432   33346999999999999999876655544333   3599999999999999999999999999


Q ss_pred             EEEEecccCee--ece----------eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc
Q 010037          308 VRVWKVIEHER--LDG----------FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (519)
Q Consensus       308 I~iWd~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (519)
                      |+||+..+...  ...          ..........+.....+...+..+.+..    ....+..+.+.++..|+.....
T Consensus       217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d----~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD----ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             eeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC----CCceEeecccceEEEEEeeccc
Confidence            99999322110  000          0000111112223333333333332222    2234566778888888876643


Q ss_pred             ccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe---EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 010037          376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---CLRVF-SHNNYVTSVAFNPVDDNYFISGSID  450 (519)
Q Consensus       376 ~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~---~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~D  450 (519)
                      .    +.++. -...++|++++|.. +|++|+.|..|+|||.+++.   ..+.| .|...|.++.|+|.+..+|++|+.|
T Consensus       293 ~----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D  367 (423)
T KOG0313|consen  293 L----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD  367 (423)
T ss_pred             c----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence            3    22222 35678999999987 99999999999999998763   22333 5999999999999889999999999


Q ss_pred             CeEEEEEcCCCc-EE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          451 GKVRIWEVRRCQ-VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       451 g~V~iwd~~~~~-~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +++++||+|+.+ .+ ....|.+.|.++.|.. +.+|++|+.|.+|+|+.-.
T Consensus       368 ~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  368 NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            999999999876 44 7889999999999965 4579999999999999653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=1.7e-23  Score=193.90  Aligned_cols=170  Identities=26%  Similarity=0.497  Sum_probs=151.8

Q ss_pred             cCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC
Q 010037          282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (519)
Q Consensus       282 ~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  361 (519)
                      +.+.-+-|..|+|||+||++|+.||-|.+|++.+|+..+.++...                                   
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA-----------------------------------  255 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA-----------------------------------  255 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-----------------------------------
Confidence            456678899999999999999999999999999998655543221                                   


Q ss_pred             CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEee
Q 010037          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP  438 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp  438 (519)
                                         ...+--+..+|.|+.|+.+. .|++|+.||.|++|.+.+|.|++.|.  |...|+|+.|+.
T Consensus       256 -------------------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr  316 (508)
T KOG0275|consen  256 -------------------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR  316 (508)
T ss_pred             -------------------hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence                               12234477899999999999 99999999999999999999999996  999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          439 VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       439 ~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                       |+..+++++.|.++||.-+.+++++ .+.+|...|+.+.|.+||..+++++.||+|++|+.++..+..
T Consensus       317 -D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~  384 (508)
T KOG0275|consen  317 -DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS  384 (508)
T ss_pred             -CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh
Confidence             8999999999999999999999998 589999999999999999999999999999999999876543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.5e-22  Score=200.51  Aligned_cols=242  Identities=20%  Similarity=0.286  Sum_probs=202.2

Q ss_pred             cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC--eeece
Q 010037          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH--ERLDG  321 (519)
Q Consensus       244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~--~~~~~  321 (519)
                      .|.+++|.+|++||.|++|++.....+.+.. ....++.|.+.|+.+....+++.|++++.|-+|++|+...+  -++..
T Consensus        34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st  112 (735)
T KOG0308|consen   34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST  112 (735)
T ss_pred             CCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh
Confidence            3577789999999999999998666544433 23467899999999999999999999999999999999877  57778


Q ss_pred             eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc------cccceeEee-ccCCCeeEE
Q 010037          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL------LEKPLHEFQ-GHSSEVLDL  394 (519)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~------~~~~~~~~~-~h~~~V~~l  394 (519)
                      +..|...+.|+++......               ....++.+..+.+|+......      .......+. |+...|.++
T Consensus       113 ir~H~DYVkcla~~ak~~~---------------lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen  113 IRTHKDYVKCLAYIAKNNE---------------LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             hhcccchheeeeecccCce---------------eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence            8888888888887533222               224566677777777764311      123333444 899999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCC
Q 010037          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIRE  471 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~  471 (519)
                      +.++.| .+++|+..+.+++||.++.+.+..+ +|...|.++..++ +|+.+++++.||+|++||+...+++ .+..|..
T Consensus       178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence            999999 9999999999999999998776666 5999999999999 9999999999999999999999888 5888999


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      .|+++..+|+-..+.+|+.||.|..=|+++.
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            9999999999999999999999999999884

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=1.5e-21  Score=206.93  Aligned_cols=262  Identities=18%  Similarity=0.236  Sum_probs=201.6

Q ss_pred             ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCc-----------cccccccccccceeecCCCCEEEEEEccC
Q 010037          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------QSRELSSLYTGQEFLAHEGSILTMKFSLD  295 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~-----------~~~~~~~~~~~~~l~~H~~~I~~l~fspd  295 (519)
                      .+..+..|...+.|+.|+|||++||+|+.|+.|.||....           +......+.....+.+|...|..++|+|+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            3445666778888999999999999999999999999873           11112233345678999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc
Q 010037          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (519)
Q Consensus       296 g~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (519)
                      +.+||+++.|++|.||+..+.+++..+..|...+..+.|.+.+.                .....+.|..+.+|....|.
T Consensus       141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk----------------y~ASqsdDrtikvwrt~dw~  204 (942)
T KOG0973|consen  141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK----------------YFASQSDDRTLKVWRTSDWG  204 (942)
T ss_pred             ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC----------------eeeeecCCceEEEEEcccce
Confidence            99999999999999999999999999999999888888876652                22345667777777765554


Q ss_pred             ccccceeEee--ccCCCeeEEEEcCCC-eEEEEe----CCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeC----C---
Q 010037          376 LLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV----D---  440 (519)
Q Consensus       376 ~~~~~~~~~~--~h~~~V~~l~~sp~~-~L~sgs----~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~----d---  440 (519)
                      +....-..+.  .-.....-+.|+|+| +|++..    .-.++.|.+-.+-+.-..+ .|..++.++.|+|.    .   
T Consensus       205 i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~n  284 (942)
T KOG0973|consen  205 IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKN  284 (942)
T ss_pred             eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccccc
Confidence            4221111111  123467889999999 887763    2346788877666644444 69999999999983    1   


Q ss_pred             -----C----CEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          441 -----D----NYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       441 -----~----~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                           .    ..+|+|+.|++|-||.....+++.  ..-....|..++|+|||..|++++.||+|.+..+....+
T Consensus       285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             CCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence                 2    168899999999999998777663  333467899999999999999999999999999876543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=1.3e-21  Score=207.31  Aligned_cols=208  Identities=24%  Similarity=0.391  Sum_probs=161.3

Q ss_pred             cccceeecCCCCeEEeee--cCCeEEEeeCCcccccccc-----ccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          237 RHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSS-----LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs--~dg~I~vw~~~~~~~~~~~-----~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+-++.++|++..+|+|+  .|+.++||+...-..+...     ....-....|.+.|+|+.|+|||+|||+|++|+.|.
T Consensus        15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~   94 (942)
T KOG0973|consen   15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM   94 (942)
T ss_pred             eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence            356789999999999999  8999999988643221111     111224567999999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      ||..... ....          ++...+.                        ...+     .    ..+.+..+.+|.+
T Consensus        95 iW~~~~~-~~~~----------~fgs~g~------------------------~~~v-----E----~wk~~~~l~~H~~  130 (942)
T KOG0973|consen   95 IWERAEI-GSGT----------VFGSTGG------------------------AKNV-----E----SWKVVSILRGHDS  130 (942)
T ss_pred             Eeeeccc-CCcc----------ccccccc------------------------cccc-----c----eeeEEEEEecCCC
Confidence            9997641 0000          0000000                        0000     0    0134677899999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee-
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-  466 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~-  466 (519)
                      .|.+++|+|++ +|++++.|++|.||+..+.+.++++. |.+.|-.+.|.| -|+|||+-+.|++|+||++.+..+.+. 
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~I  209 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSI  209 (942)
T ss_pred             ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEee
Confidence            99999999999 99999999999999999999998886 999999999999 999999999999999999887655532 


Q ss_pred             ------ccCCCceEEEEEeeCCCEEEEEe
Q 010037          467 ------TDIREIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       467 ------~~~~~~V~~v~~spdg~~l~sgs  489 (519)
                            ......+..+.|+|||++|++.-
T Consensus       210 t~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  210 TKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             ccchhhCCCcceeeecccCCCcCeecchh
Confidence                  22344588999999999999854

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.88  E-value=4.4e-22  Score=190.32  Aligned_cols=250  Identities=18%  Similarity=0.235  Sum_probs=202.3

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+.+|...++.+.|-++...|++|+.|..|++|++...+.++     ..++.|..++|+.+.|.++++++++++.|+.++
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~-----~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL-----ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh-----hhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            466777888889999999999999999999999998655332     346778889999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +|++...+...++.+|...++++.+...+..                .+.++.+.++..|+.........++     ...
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~----------------vVsgs~DRtiK~WDl~k~~C~kt~l-----~~S  303 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR----------------VVSGSADRTIKLWDLQKAYCSKTVL-----PGS  303 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccc----------------eeeccccchhhhhhhhhhheecccc-----ccc
Confidence            9999999999999998888877766554432                2455566666666655432222221     234


Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee-c-
Q 010037          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-T-  467 (519)
Q Consensus       390 ~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~-~-  467 (519)
                      .+.+|..++ ..+++|..|++||+||+++..+.......+.|+++..++ ++..+.+++.|.++.+.|+++..+... . 
T Consensus       304 ~cnDI~~~~-~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  304 QCNDIVCSI-SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             cccceEecc-eeeeecccccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeec
Confidence            455555542 278999999999999999999999999788999999999 999999999999999999999887742 1 


Q ss_pred             ---cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          468 ---DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       468 ---~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                         ......+.++|+|++.|+++|+.||.|+||++.++++...
T Consensus       382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~  424 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV  424 (459)
T ss_pred             cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence               1233489999999999999999999999999999998754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=4.2e-21  Score=186.05  Aligned_cols=229  Identities=18%  Similarity=0.277  Sum_probs=183.8

Q ss_pred             eEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      .|...+-+++.+|||++||+|+.|..|.||+.....       ..+.+.+|.+.|.+++|-.....|++++.|++|++|+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~  272 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS  272 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence            566677789999999999999999999999987433       3456899999999999998888999999999999999


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      +.....+.++..|+..+..+......  .              ....+..+.++.+|..     .+.....+.+|.+.+-
T Consensus       273 ~~~~s~vetlyGHqd~v~~IdaL~re--R--------------~vtVGgrDrT~rlwKi-----~eesqlifrg~~~sid  331 (479)
T KOG0299|consen  273 IDQLSYVETLYGHQDGVLGIDALSRE--R--------------CVTVGGRDRTVRLWKI-----PEESQLIFRGGEGSID  331 (479)
T ss_pred             hhHhHHHHHHhCCccceeeechhccc--c--------------eEEeccccceeEEEec-----cccceeeeeCCCCCee
Confidence            99888887777776655443322111  0              1112334555555544     4455667889999999


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec--C-----------CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037          393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--H-----------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (519)
Q Consensus       393 ~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~--h-----------~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~  459 (519)
                      |++|-.+.++++|+.+|.|.||++.+.+++.+..  |           +.+|++|+..| ..+++|+|+.+|.|++|-+.
T Consensus       332 cv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  332 CVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             eEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEec
Confidence            9999998899999999999999999999888764  2           23899999999 99999999999999999998


Q ss_pred             CC----cEEeeccCCCceEEEEEeeCCCEEEEEec
Q 010037          460 RC----QVVDYTDIREIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       460 ~~----~~~~~~~~~~~V~~v~~spdg~~l~sgs~  490 (519)
                      .+    .++.-....+.|++++|+++|+.|++|..
T Consensus       411 ~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  411 DGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             CCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence            77    34444557788999999999997777643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.5e-21  Score=173.59  Aligned_cols=192  Identities=25%  Similarity=0.467  Sum_probs=157.1

Q ss_pred             cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEE
Q 010037          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (519)
Q Consensus       255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  333 (519)
                      ..|++.|.++.....    +...+.+ .-.+.+..++|+++ .+.+++++.||+++|||+...                 
T Consensus        36 G~G~L~ile~~~~~g----i~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-----------------   93 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKG----IQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-----------------   93 (311)
T ss_pred             cCceEEEEecCCCCC----eEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCC-----------------
Confidence            368899988862221    1111122 23578999999995 468899999999999995221                 


Q ss_pred             EeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcE
Q 010037          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTV  411 (519)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V  411 (519)
                                                                  .+|++.++.|...|.++.|++..  .+++++.|++|
T Consensus        94 --------------------------------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti  129 (311)
T KOG0277|consen   94 --------------------------------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI  129 (311)
T ss_pred             --------------------------------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence                                                        24678889999999999999965  88888999999


Q ss_pred             EEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-CcEEeeccCCCceEEEEEee-CCCEEEEE
Q 010037          412 RLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCP-DGKGGIVG  488 (519)
Q Consensus       412 ~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~~~~V~~v~~sp-dg~~l~sg  488 (519)
                      +||+..-++.+++|. |...|...+|+|..+++|+++|.|+++++||++. ++.+.+..|...|.++.|+. +.+.|+||
T Consensus       130 KLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg  209 (311)
T KOG0277|consen  130 KLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG  209 (311)
T ss_pred             EeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence            999999999999997 9999999999999999999999999999999986 45556788888999999987 56789999


Q ss_pred             ecCCeEEEEECCCCeeeeccccceeEEecCC
Q 010037          489 TMTGNCRFYDIKGMQIFDLSTTAYLFALLGH  519 (519)
Q Consensus       489 s~dg~v~iwdl~~~~l~~~~~~~~~~~l~GH  519 (519)
                      +.|+.|++||++..+       .+++.|.||
T Consensus       210 ~vd~~vr~wDir~~r-------~pl~eL~gh  233 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLR-------TPLFELNGH  233 (311)
T ss_pred             CCCceEEEEehhhcc-------ccceeecCC
Confidence            999999999998754       346666666

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.5e-20  Score=164.31  Aligned_cols=249  Identities=18%  Similarity=0.260  Sum_probs=195.9

Q ss_pred             eeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc----CCCEEEEEe-CCC
Q 010037          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGG-EDG  306 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~LaSgs-~Dg  306 (519)
                      +.|...+.|.+|+|.|.++|+|+.|++|++...+........  ...+|.-|.+.|..++|-.    .|..|++++ .|.
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g--~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG--HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccC--cceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            456777888999999999999999999999887654433222  2235788999999999965    346788876 478


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      .|.+-|-.+++....+..+...+..++..                 .......++.+.++.+|+.++.......-..+.+
T Consensus       164 ~iy~tdc~~g~~~~a~sghtghilalysw-----------------n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~  226 (350)
T KOG0641|consen  164 KIYITDCGRGQGFHALSGHTGHILALYSW-----------------NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD  226 (350)
T ss_pred             eEEEeecCCCCcceeecCCcccEEEEEEe-----------------cCcEEEccCCCceEEEEeeeccceeeeccCcccC
Confidence            89999998888777776665544333211                 1123356788889999998775443222222222


Q ss_pred             ---cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          387 ---HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       387 ---h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                         ....|..++..|.| +|++|-.|....+||++.++.++.|. |...|.|+.|+| ...|+++++.|.+|++-|+...
T Consensus       227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccc
Confidence               24689999999999 99999999999999999999999985 999999999999 8999999999999999999753


Q ss_pred             -----cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          462 -----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       462 -----~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                           .++....|++.+..+.|+|..--+++.+.|.++.+|-+.
T Consensus       306 la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  306 LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence                 233567899999999999999889999999999999764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=4e-21  Score=194.19  Aligned_cols=261  Identities=18%  Similarity=0.241  Sum_probs=202.0

Q ss_pred             ccccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc---CCCEE
Q 010037          223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYL  299 (519)
Q Consensus       223 ~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~L  299 (519)
                      ...+........+.++.+++++|+|++||+|..-|+++||++.....       .-.+.+|...|.|+.|+.   ..++|
T Consensus       447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-------~~~~eAHesEilcLeyS~p~~~~kLL  519 (1080)
T KOG1408|consen  447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-------TCFMEAHESEILCLEYSFPVLTNKLL  519 (1080)
T ss_pred             cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-------hhheecccceeEEEeecCchhhhHhh
Confidence            33444444455567778899999999999999999999999874332       224689999999999986   34789


Q ss_pred             EEEeCCCcEEEEecccC-eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037          300 ASGGEDGTVRVWKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (519)
Q Consensus       300 aSgs~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (519)
                      |+++.|..|+|+|+... ..+.++..|...++.+.|..++.+.- .+.....+........+..++.+..          
T Consensus       520 ASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~-MiscGADksimFr~~qk~~~g~~f~----------  588 (1080)
T KOG1408|consen  520 ASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK-MISCGADKSIMFRVNQKASSGRLFP----------  588 (1080)
T ss_pred             hhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE-EEeccCchhhheehhccccCceecc----------
Confidence            99999999999999654 45667788888888888877664321 1222222222222222222222111          


Q ss_pred             cceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCeE
Q 010037          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKV  453 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (519)
                        .++-.-....+.+|+..|+. ++++++.|+.|+|||+.+++..+.|+    |.+....+...| .+.|+++.+.|.+|
T Consensus       589 --r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl  665 (1080)
T KOG1408|consen  589 --RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTL  665 (1080)
T ss_pred             --ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCce
Confidence              11111224678999999988 99999999999999999999999996    778888999999 99999999999999


Q ss_pred             EEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       454 ~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      .++|..+++++ +..+|...|+.+.|.+|-+.|++.+.||.|.||.+..-.+
T Consensus       666 ~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi  717 (1080)
T KOG1408|consen  666 CFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI  717 (1080)
T ss_pred             EEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence            99999999998 6899999999999999999999999999999999975433

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=1.3e-20  Score=173.90  Aligned_cols=197  Identities=18%  Similarity=0.298  Sum_probs=166.2

Q ss_pred             eecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          235 IDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       235 ~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      .|.+.+++|+| ...++++|+.||+||+|++.....     ...+....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence            47788899999 556667999999999999985421     222445679999999999999999999999999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .+++.                                                               ..+..|.++|.+
T Consensus       102 ~S~Q~---------------------------------------------------------------~~v~~Hd~pvkt  118 (347)
T KOG0647|consen  102 ASGQV---------------------------------------------------------------SQVAAHDAPVKT  118 (347)
T ss_pred             cCCCe---------------------------------------------------------------eeeeecccceeE
Confidence            88862                                                               335669999999


Q ss_pred             EEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE---eec
Q 010037          394 LSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYT  467 (519)
Q Consensus       394 l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~---~~~  467 (519)
                      +.|-+..   .|+|||.|++|+.||++...++.++.....|+++..-   ..+++.+..+..|.+|+++++...   ...
T Consensus       119 ~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~S  195 (347)
T KOG0647|consen  119 CHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIES  195 (347)
T ss_pred             EEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence            9998765   8999999999999999999999999999999988763   458888899999999999876543   233


Q ss_pred             cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       468 ~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      ..+-.+.+|+..+|....+.|+..|.|.|..+..+
T Consensus       196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~  230 (347)
T KOG0647|consen  196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP  230 (347)
T ss_pred             cccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence            45667899999999999999999999999988764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=9e-22  Score=201.08  Aligned_cols=238  Identities=18%  Similarity=0.251  Sum_probs=188.8

Q ss_pred             eeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCee
Q 010037          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       241 ~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      +.|+. +.++||+++..|.|.+||+.+....    .....|..|+..|+++.|++ ...+|+||+.||+|++||++..+.
T Consensus        93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRN----KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             cccccchhhhheeecCCCcEEEEecCccccc----hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            44443 4578999999999999999873211    11234678999999999998 557999999999999999999988


Q ss_pred             eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (519)
                      ...+......+.-+.|.+.....+               ......+.+..|+.+..+   .+...+.+|.++|.|+.|+|
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F---------------~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhP  230 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKF---------------ASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHP  230 (839)
T ss_pred             cccccccchhhhceeeccCCCceE---------------EEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecC
Confidence            888777777777788877764433               344556677788877654   34667889999999999999


Q ss_pred             CC-eEEEEeCCCcEEEEECCCCe--EEEEecCCCcEEEEEEeeCCCCEEEEEeC--CCeEEEEEcCCCcEE--eeccCCC
Q 010037          399 NG-FLLSSSADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVRIWEVRRCQVV--DYTDIRE  471 (519)
Q Consensus       399 ~~-~L~sgs~Dg~V~lWdl~~~~--~~~~~~h~~~V~~v~fsp~d~~~l~sgs~--Dg~V~iwd~~~~~~~--~~~~~~~  471 (519)
                      ++ +||||+.|++|+|||+.+.+  .+.++....+|.+|.|-|.....|++++.  |-.|+|||++..-+.  .+..|..
T Consensus       231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~  310 (839)
T KOG0269|consen  231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD  310 (839)
T ss_pred             CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence            88 99999999999999998654  44555677899999999966777887774  779999999987655  5788999


Q ss_pred             ceEEEEEee-CCCEEEEEecCCeEEEEECC
Q 010037          472 IVSAVCYCP-DGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       472 ~V~~v~~sp-dg~~l~sgs~dg~v~iwdl~  500 (519)
                      .++.++|.. |-..|.+++.||.|..-.++
T Consensus       311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  311 SVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             cccceeccCCCceeeEeecCccHHHHhhhh
Confidence            999999966 45678899999987554443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.1e-20  Score=190.89  Aligned_cols=235  Identities=21%  Similarity=0.307  Sum_probs=187.6

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~  320 (519)
                      +.|+ ..+.||+|. ...|++|+.......       +...-+...|+++.|+++|.+||+|..+|.|.|||..+.+.+.
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s~~v~-------~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASSGSVT-------ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCCCceE-------EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence            5677 445666653 457999998765521       1122347899999999999999999999999999999999888


Q ss_pred             eeec-cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037          321 GFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (519)
Q Consensus       321 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (519)
                      .+.. +...+.++.|..                  .....++.++.+..++.+......   ..+.+|...|..++|+++
T Consensus       254 ~~~~~h~~rvg~laW~~------------------~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d  312 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWNS------------------SVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPD  312 (484)
T ss_pred             cccCCcCceeEEEeccC------------------ceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCC
Confidence            8887 666676776652                  122345556666666665543322   237899999999999999


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe--CCCeEEEEEcCCCcEEeeccCCCceEE
Q 010037          400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTDIREIVSA  475 (519)
Q Consensus       400 ~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~~~~V~~  475 (519)
                      + +|++|+.|+.|.|||.....++..+. |...|.+++|+|....+||+|+  .|+.|++||..+++.+........|..
T Consensus       313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs  392 (484)
T KOG0305|consen  313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS  392 (484)
T ss_pred             CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee
Confidence            9 99999999999999997777776664 9999999999998899999965  599999999999999999999999999


Q ss_pred             EEEeeCCCEEEE--EecCCeEEEEECCCCeee
Q 010037          476 VCYCPDGKGGIV--GTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       476 v~~spdg~~l~s--gs~dg~v~iwdl~~~~l~  505 (519)
                      +.|++..+-|++  |..++.|.||+..+.+..
T Consensus       393 L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~  424 (484)
T KOG0305|consen  393 LIWSKKYKELLSTHGYSENQITLWKYPSMKLV  424 (484)
T ss_pred             EEEcCCCCEEEEecCCCCCcEEEEecccccee
Confidence            999999977776  445778999999775443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=5.8e-21  Score=186.40  Aligned_cols=202  Identities=24%  Similarity=0.373  Sum_probs=167.8

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      ..+.+.+++|+|...+=.+....-++.||+.....       ..+++.-.++.|.++.|..||++||.|...|.|+|+|+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~   97 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM   97 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhh-------hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence            34677789999988766555566789999876332       22334456788999999999999999999999999996


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .+..                                                              .+..+++|..+|..
T Consensus        98 k~r~--------------------------------------------------------------iLR~~~ah~apv~~  115 (487)
T KOG0310|consen   98 KSRV--------------------------------------------------------------ILRQLYAHQAPVHV  115 (487)
T ss_pred             ccHH--------------------------------------------------------------HHHHHhhccCceeE
Confidence            4421                                                              14557889999999


Q ss_pred             EEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEEeeccC
Q 010037          394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDI  469 (519)
Q Consensus       394 l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~  469 (519)
                      +.|+|.+  .|++|+.|+.+++||+.+...+..+ .|.++|.|.+|+|.++.++++|+.||+||+||++.. ..+....|
T Consensus       116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh  195 (487)
T KOG0310|consen  116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH  195 (487)
T ss_pred             EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence            9999987  8999999999999999999875444 499999999999988889999999999999999987 66677889


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEECC-CCeee
Q 010037          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-GMQIF  505 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~-~~~l~  505 (519)
                      ..+|..+.+-|.|..+++++. ..|+|||+. ++++.
T Consensus       196 g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  196 GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL  231 (487)
T ss_pred             CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh
Confidence            999999999999999999874 479999998 45543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=4.4e-21  Score=177.66  Aligned_cols=245  Identities=18%  Similarity=0.346  Sum_probs=184.3

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~  307 (519)
                      .+.+.+|.+++-.++.......+.+++.|.+-+||.++.+..       ...+.||.+.|++|+|++.+.++++++.|++
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t  213 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-------LATYTGHTGSVNSIKFHNSGLLLLTASGDET  213 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-------eeeecccccceeeEEeccccceEEEccCCcc
Confidence            345677888888888888888999999999999999986554       3458899999999999999999999999999


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      .+||...-.-....-..+.....-        ...-..  +. .. .........++          .....|+..+.+|
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsE--------eE~e~s--De-~~-~d~d~~~~sD~----------~tiRvPl~~ltgH  271 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSE--------EEEEHS--DE-HN-RDTDSSEKSDG----------HTIRVPLMRLTGH  271 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCch--------hhhhcc--cc-cc-cccccccccCC----------ceeeeeeeeeecc
Confidence            999984221111000000000000        000000  00 00 00000000000          0113568889999


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC--cE
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QV  463 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~--~~  463 (519)
                      .+.|.+..|-..| .+++++.|.+..+||++++.++..+. |....+.++-+| ..+++++.+.|.+.++||++..  .+
T Consensus       272 ~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV  350 (481)
T KOG0300|consen  272 RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSV  350 (481)
T ss_pred             ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhccee
Confidence            9999999999988 99999999999999999999999986 999999999999 8999999999999999999953  23


Q ss_pred             EeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       464 ~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ..+.+|.+.|+++.|.-|.+ +++|+.|.+|+|||+++..
T Consensus       351 ~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  351 AVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             eeecccccceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence            36899999999999998865 8899999999999998653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=3.1e-22  Score=202.98  Aligned_cols=207  Identities=21%  Similarity=0.460  Sum_probs=184.8

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      ...+|...++++.....++.+++|+.|..+-+|.+.+.....+       |.+|..+|.+|.|+++..+|++|+.+|+|+
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S-------~~~hespIeSl~f~~~E~LlaagsasgtiK   95 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS-------LTGHESPIESLTFDTSERLLAAGSASGTIK   95 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe-------eeccCCcceeeecCcchhhhcccccCCcee
Confidence            4455666666666677888999999999999999987665443       789999999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +||+.+.+.                                                              ++++.+|..
T Consensus        96 ~wDleeAk~--------------------------------------------------------------vrtLtgh~~  113 (825)
T KOG0267|consen   96 VWDLEEAKI--------------------------------------------------------------VRTLTGHLL  113 (825)
T ss_pred             eeehhhhhh--------------------------------------------------------------hhhhhcccc
Confidence            999976542                                                              556788999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-ee
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY  466 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~  466 (519)
                      .+..+.|+|-+ +.++|+.|..+++||++..-|.+.+. |...|.++.|+| +|.++++|+.|.+++|||+..++++ .+
T Consensus       114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef  192 (825)
T KOG0267|consen  114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEF  192 (825)
T ss_pred             CcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeeccccccccccc
Confidence            99999999999 88999999999999999888999987 999999999999 9999999999999999999999998 57


Q ss_pred             ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       467 ~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ..|...+.++.|+|..-+++.|+.|+++++||+++-+++.
T Consensus       193 ~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  193 KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             ccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence            7799999999999999999999999999999999776654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.86  E-value=6.6e-21  Score=176.07  Aligned_cols=208  Identities=20%  Similarity=0.390  Sum_probs=170.9

Q ss_pred             ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      -++++.-|.+.++++.|+|....|++|+.|++|+++|+.+...... +   +.| .-..+|.++.|+|.|.+|+.|..-.
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA-~---K~~-qd~~~vrsiSfHPsGefllvgTdHp  238 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA-F---KVF-QDTEPVRSISFHPSGEFLLVGTDHP  238 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH-H---HHh-hccceeeeEeecCCCceEEEecCCC
Confidence            3567788999999999999999999999999999999986543211 1   111 2346899999999999999999999


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      ++++||+.+-++...-.                                                           .-.+
T Consensus       239 ~~rlYdv~T~Qcfvsan-----------------------------------------------------------Pd~q  259 (430)
T KOG0640|consen  239 TLRLYDVNTYQCFVSAN-----------------------------------------------------------PDDQ  259 (430)
T ss_pred             ceeEEeccceeEeeecC-----------------------------------------------------------cccc
Confidence            99999998877532110                                                           1246


Q ss_pred             cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--C-CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h-~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      |.+.|+++.+++.+ +.+|++.||.|+|||=-+++|+.++.  | ...|.+..|.. +++|+++.+.|..|++|.+.+++
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCc
Confidence            99999999999999 89999999999999999999999996  4 45788999998 99999999999999999998766


Q ss_pred             EEe-e-------------------------------------------------ccCCCceEEEEEeeCCCEEEEEecCC
Q 010037          463 VVD-Y-------------------------------------------------TDIREIVSAVCYCPDGKGGIVGTMTG  492 (519)
Q Consensus       463 ~~~-~-------------------------------------------------~~~~~~V~~v~~spdg~~l~sgs~dg  492 (519)
                      ++. +                                                 .+|.+.+..+.-+|.+..+++|+.|-
T Consensus       339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence            442 1                                                 24666777788888888888888888


Q ss_pred             eEEEEEC
Q 010037          493 NCRFYDI  499 (519)
Q Consensus       493 ~v~iwdl  499 (519)
                      .+|+|--
T Consensus       419 raRFWyr  425 (430)
T KOG0640|consen  419 RARFWYR  425 (430)
T ss_pred             eeeeeee
Confidence            8888854

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.3e-19  Score=167.02  Aligned_cols=213  Identities=22%  Similarity=0.346  Sum_probs=154.8

Q ss_pred             ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeee
Q 010037          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (519)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (519)
                      ..+.+..-.+.|++|.|+++|.+|++++.|.+++|||..+++..+.+......+..+.|.......+....         
T Consensus         6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt---------   76 (311)
T KOG1446|consen    6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST---------   76 (311)
T ss_pred             cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC---------
Confidence            34455566788999999999999999999999999999999999999888888777777665544333221         


Q ss_pred             eeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecC-------
Q 010037          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH-------  427 (519)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h-------  427 (519)
                           ..+.++...+...    .+.++.|.||...|+.|+.+|-+ .+++++.|++|++||++..+|...+..       
T Consensus        77 -----k~d~tIryLsl~d----NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~A  147 (311)
T KOG1446|consen   77 -----KEDDTIRYLSLHD----NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAA  147 (311)
T ss_pred             -----CCCCceEEEEeec----CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCccee
Confidence                 1122232222222    35588899999999999999988 999999999999999997665543321       


Q ss_pred             ---------------------------------------CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-ec
Q 010037          428 ---------------------------------------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT  467 (519)
Q Consensus       428 ---------------------------------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~  467 (519)
                                                             ....+.|.|+| +|++++.+...+.+++.|.-+|.+.. +.
T Consensus       148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs  226 (311)
T KOG1446|consen  148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFS  226 (311)
T ss_pred             ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence                                                   12345556666 66666666666666666666655442 22


Q ss_pred             cCCC---ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          468 DIRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       468 ~~~~---~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      .+..   .-...+|+||++++++|+.||+|.+|++++++....
T Consensus       227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV  269 (311)
T ss_pred             eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence            2221   125678999999999999999999999998876543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.3e-19  Score=167.03  Aligned_cols=244  Identities=18%  Similarity=0.215  Sum_probs=181.0

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccc-------------------------------------ccccc
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-------------------------------------SLYTG  277 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~-------------------------------------~~~~~  277 (519)
                      ...+.++.|+++|.++++++.|..++||+...+.....                                     .-...
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            45677899999999999999999999999876443211                                     00111


Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeee
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (519)
                      +-|.||...|+.|+.+|-+..+++++.|++|++||++..++...+.....+  +.++.+  .+.++++.....       
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp--~GLifA~~~~~~-------  162 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDP--EGLIFALANGSE-------  162 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECC--CCcEEEEecCCC-------
Confidence            347899999999999998899999999999999999988877666544332  233322  233333333222       


Q ss_pred             eccCCCeeEEEeCCccccccccceeEee---ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCC---
Q 010037          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQ---GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---  429 (519)
Q Consensus       358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~---  429 (519)
                             .+.+++.+.+..  .|..++.   +-....+.|.|+|+| .|+.++..+.+++.|.-.|..+.++. +..   
T Consensus       163 -------~IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  163 -------LIKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             -------eEEEEEecccCC--CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence                   444555554432  2333332   346789999999999 89999999999999999999998886 221   


Q ss_pred             cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eecc-CCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       430 ~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~-~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .-...+|.| +++++++|+.||+|.+|+++++..+ .+.+ +..++.++.|+|.-.++++++  ..+.+|=...
T Consensus       234 ~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~  304 (311)
T KOG1446|consen  234 LPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE  304 (311)
T ss_pred             cceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence            225788999 9999999999999999999999877 4555 688999999999876666655  5677886543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.85  E-value=8.7e-20  Score=175.60  Aligned_cols=244  Identities=18%  Similarity=0.254  Sum_probs=199.1

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~  307 (519)
                      +..+.+|...+..+.++|+...+++++.|..|+||......       .......|..+|+.+..+|.|.||++++.||+
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~  326 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGT  326 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-------CccccccccccceeeeeccCCcEEEEecCCce
Confidence            44577788888889999999999999999999999987544       22346789999999999999999999999999


Q ss_pred             EEEEecccCeeeceeecc--CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          308 VRVWKVIEHERLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      ..+.|+.++.++......  ....++..|.+++                .....+..++.+.+|+.+..    ..+..|.
T Consensus       327 w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----------------Lifgtgt~d~~vkiwdlks~----~~~a~Fp  386 (506)
T KOG0289|consen  327 WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----------------LIFGTGTPDGVVKIWDLKSQ----TNVAKFP  386 (506)
T ss_pred             EEEEEccCCcEEEEEeeccccceeEEeeEcCCc----------------eEEeccCCCceEEEEEcCCc----cccccCC
Confidence            999999999877665442  2234444454443                23346677788888887653    3467889


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-  461 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-  461 (519)
                      +|.++|..|+|+.+| +|++++.|+.|++||++..+..+++.  ....|.++.|.+ .|.||+.++.|=+|++++-.+. 
T Consensus       387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~  465 (506)
T KOG0289|consen  387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKS  465 (506)
T ss_pred             CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEEEEeccccc
Confidence            999999999999999 99999999999999999988888886  334699999999 9999999988877777765443 


Q ss_pred             -c-EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          462 -Q-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       462 -~-~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                       . +..+..|.+..+.+.|....+++++++.|..+++|.+
T Consensus       466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence             3 3357778889999999999999999999999988864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=1.8e-20  Score=177.40  Aligned_cols=195  Identities=21%  Similarity=0.342  Sum_probs=156.0

Q ss_pred             CCCeEEeeecCCeEEEeeCCcccccc---------ccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeccc
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSREL---------SSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~---------~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~  315 (519)
                      +..+.|+=+..|+|+||++...-..+         +......++.+|.+.=+.|+|||-. ..|+||..-+.|++|...+
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~  243 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST  243 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence            44566677788999999987532222         2233445678999999999999922 2488888888999999876


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      +.-.                                                        ..   ...+.+|+..|-+|+
T Consensus       244 g~W~--------------------------------------------------------vd---~~Pf~gH~~SVEDLq  264 (440)
T KOG0302|consen  244 GSWK--------------------------------------------------------VD---QRPFTGHTKSVEDLQ  264 (440)
T ss_pred             Ccee--------------------------------------------------------ec---Cccccccccchhhhc
Confidence            5410                                                        00   123567999999999


Q ss_pred             EcCCC--eEEEEeCCCcEEEEECCCC---eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc---EE-ee
Q 010037          396 WSKNG--FLLSSSADKTVRLWQVGID---RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---VV-DY  466 (519)
Q Consensus       396 ~sp~~--~L~sgs~Dg~V~lWdl~~~---~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~---~~-~~  466 (519)
                      |+|..  .|++||-||+|+|||++.+   .++.+-.|.+.|+-|.|+. ...+||+|+.||+++|||+++-+   ++ .+
T Consensus       265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f  343 (440)
T KOG0302|consen  265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATF  343 (440)
T ss_pred             cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeE
Confidence            99975  9999999999999999988   5556656999999999999 77799999999999999999743   33 78


Q ss_pred             ccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECC
Q 010037          467 TDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       467 ~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~  500 (519)
                      ..|..+|++|.|+|. ...|++++.|..|.|||+.
T Consensus       344 k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  344 KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             EeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            899999999999995 4568888999999999996

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.85  E-value=7.6e-20  Score=185.13  Aligned_cols=224  Identities=21%  Similarity=0.328  Sum_probs=179.8

Q ss_pred             eeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (519)
Q Consensus       241 ~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~  319 (519)
                      +++.+ ++..+++|+.|+.|.+|....       ......+.+|+..|.|+....++. |+||+.|.++++|...  ++.
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~-------~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~  133 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQ-------AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELV  133 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCC-------CCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhh
Confidence            55554 455699999999999998764       334456899999999999888887 9999999999999864  444


Q ss_pred             ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (519)
                      ..++.|...+..+...+..                 ..++++.+..+.+|...      +.+.+|.+|...|..+++-++
T Consensus       134 ~~l~gH~asVWAv~~l~e~-----------------~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~  190 (745)
T KOG0301|consen  134 YSLQGHTASVWAVASLPEN-----------------TYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDD  190 (745)
T ss_pred             cccCCcchheeeeeecCCC-----------------cEEeccCcceeeeccCC------chhhhhccchhheeeeEEecC
Confidence            4455555555444333222                 44678888888888763      557889999999999999999


Q ss_pred             CeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC-CceEEEEE
Q 010037          400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCY  478 (519)
Q Consensus       400 ~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-~~V~~v~~  478 (519)
                      +.+++++.||.|++|++.....+....|...|+++...+ ++..+++++.|++++||+..  .+.+...+. ..|+++++
T Consensus       191 ~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~  267 (745)
T KOG0301|consen  191 SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV  267 (745)
T ss_pred             CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence            999999999999999995555555667999999999777 78899999999999999987  555544444 48999999


Q ss_pred             eeCCCEEEEEecCCeEEEEECCC
Q 010037          479 CPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       479 spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      -++|. +++|+.||.||||....
T Consensus       268 L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  268 LLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             eeCCC-EEEeccCceEEEEEecc
Confidence            99997 78899999999998863

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.5e-19  Score=167.88  Aligned_cols=250  Identities=14%  Similarity=0.173  Sum_probs=177.9

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccc-----c---------------------------ccc
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-----S---------------------------LYT  276 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~-----~---------------------------~~~  276 (519)
                      ..+++|.+.+.+++|+.||+.||+++.|+.|+||++++-.....     +                           ++.
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            34788999999999999999999999999999999875211000     0                           000


Q ss_pred             c--------------------ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEee
Q 010037          277 G--------------------QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI  336 (519)
Q Consensus       277 ~--------------------~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~  336 (519)
                      .                    .--..|.-.|..+-...++.||+|++.|..|.+|++. |+.+..++...........++
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            0                    0012355567677777788999999999999999998 888888777666665556655


Q ss_pred             cCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCC----ccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcE
Q 010037          337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP----KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTV  411 (519)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V  411 (519)
                      ++.-.. ...+...               +.+|.+    .-.-..-+.+..++||...|+.++|+|+. .++|.+.||++
T Consensus       239 ~GRFia-~~gFTpD---------------VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~w  302 (420)
T KOG2096|consen  239 DGRFIA-VSGFTPD---------------VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKW  302 (420)
T ss_pred             CCcEEE-EecCCCC---------------ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcE
Confidence            543221 1111111               111111    00001124467789999999999999999 99999999999


Q ss_pred             EEEECCC-------CeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEE
Q 010037          412 RLWQVGI-------DRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVC  477 (519)
Q Consensus       412 ~lWdl~~-------~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~  477 (519)
                      +|||+.-       .+.+++..     ..+.-..+.++| .+..|+... ...|+++..++++...  ...|...|++++
T Consensus       303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is  380 (420)
T KOG2096|consen  303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSIS  380 (420)
T ss_pred             EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEE
Confidence            9999863       22333331     233344899999 888887754 5589999999988773  456889999999


Q ss_pred             EeeCCCEEEEEecCCeEEEEE
Q 010037          478 YCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       478 ~spdg~~l~sgs~dg~v~iwd  498 (519)
                      |+++|+++++++ |..++++.
T Consensus       381 ~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  381 YSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             ecCCCcEEeeec-ceeeeeec
Confidence            999999999988 66777775

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=3.1e-20  Score=175.84  Aligned_cols=211  Identities=18%  Similarity=0.302  Sum_probs=162.4

Q ss_pred             ccccccCCeeeEeecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEE
Q 010037          223 GWLKKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLA  300 (519)
Q Consensus       223 ~w~~~~~~~~~~~~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~La  300 (519)
                      .-.+++.+..+|......+.|+|-. ..|++|..-+.|++|....+......    +.|.+|+.+|-.|+|||. ...||
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~----~Pf~gH~~SVEDLqWSptE~~vfa  274 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ----RPFTGHTKSVEDLQWSPTEDGVFA  274 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC----ccccccccchhhhccCCccCceEE
Confidence            3345566677777777789999943 34888999999999998875544332    346789999999999994 46899


Q ss_pred             EEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (519)
Q Consensus       301 Sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (519)
                      ||+.||+|+|||++.+...                                                            +
T Consensus       275 ScS~DgsIrIWDiRs~~~~------------------------------------------------------------~  294 (440)
T KOG0302|consen  275 SCSCDGSIRIWDIRSGPKK------------------------------------------------------------A  294 (440)
T ss_pred             eeecCceEEEEEecCCCcc------------------------------------------------------------c
Confidence            9999999999999877421                                                            1


Q ss_pred             eeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC---CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037          381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (519)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~---~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i  455 (519)
                      ....+.|.+.|+.|.|+..- +|++|+.||+++|||++.   ++++..|+ |..+|++|.|+|.+...|++++.|.+|.|
T Consensus       295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            12237799999999999887 899999999999999975   56788887 99999999999988889999999999999


Q ss_pred             EEcCCCc-------------------EEeeccCCCceEEEEEeeCCC-EEEEEecCCeEEEE
Q 010037          456 WEVRRCQ-------------------VVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFY  497 (519)
Q Consensus       456 wd~~~~~-------------------~~~~~~~~~~V~~v~~spdg~-~l~sgs~dg~v~iw  497 (519)
                      ||+.-..                   ++........+.-+.|+++-. +|++.+.||...++
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence            9985311                   111112234577789998654 45666677754433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.85  E-value=1.3e-19  Score=184.63  Aligned_cols=248  Identities=17%  Similarity=0.233  Sum_probs=200.7

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +.+|+..|.+++++.+...+++|. .+.|+||+....+       +.+++..  +-|.+..|.|.++++++|...|.+.+
T Consensus       369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~k-------ciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLK-------CIRTITC--GYILASKFVPGDRYIVLGTKNGELQV  438 (888)
T ss_pred             eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcc-------eeEEecc--ccEEEEEecCCCceEEEeccCCceEE
Confidence            566777888899999988888875 5789999987433       3333432  47899999999999999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc-cccee-------
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLH-------  382 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~-------  382 (519)
                      +|+.+...+..++.|...+..+...+++...                ++++.+.++.+|+.....-. +....       
T Consensus       439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~----------------vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~  502 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDGAIWSISLSPDNKGF----------------VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT  502 (888)
T ss_pred             EEeehhhhhhhhhccccceeeeeecCCCCce----------------EEecCCcEEEEEeEEEEeccCcccceeeeeccc
Confidence            9999999988888888888888877776543                34566666766665433221 10000       


Q ss_pred             EeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~-~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      ..-.-...|.|+++||+| +|+.+-.|.+|+||-+.+-+..-. ++|.-+|.|+..+| ++.+++|||.|..|+||-+.-
T Consensus       503 rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  503 RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEecccc
Confidence            111235789999999999 999999999999999998775544 46999999999999 999999999999999999999


Q ss_pred             CcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          461 CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       461 ~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |.+. .+.+|.+.|.++.|.|....+.+++.|+.|+-||-..-+.+
T Consensus       582 GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i  627 (888)
T KOG0306|consen  582 GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI  627 (888)
T ss_pred             chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence            9998 58899999999999999999999999999999998765443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.6e-19  Score=167.39  Aligned_cols=241  Identities=12%  Similarity=0.232  Sum_probs=177.9

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~  319 (519)
                      |+.|++.|.+||+|+.+|.|.|||+..       +...+.+.+|..+|.+++||+||+.|+|++.|..|.+||+..|.+.
T Consensus        28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T-------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   28 CCQFSRWGDYLAVGCANGRVVIYDFDT-------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             eEEeccCcceeeeeccCCcEEEEEccc-------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence            578999999999999999999999874       3355678999999999999999999999999999999999999988


Q ss_pred             ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec------cCCCeeE
Q 010037          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG------HSSEVLD  393 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~  393 (519)
                      +.+.... ++....|.+...+..++..+.....             ++.+..        +.+.+-.      -.....+
T Consensus       101 ~rirf~s-pv~~~q~hp~k~n~~va~~~~~sp~-------------vi~~s~--------~~h~~Lp~d~d~dln~sas~  158 (405)
T KOG1273|consen  101 KRIRFDS-PVWGAQWHPRKRNKCVATIMEESPV-------------VIDFSD--------PKHSVLPKDDDGDLNSSASH  158 (405)
T ss_pred             eEEEccC-ccceeeeccccCCeEEEEEecCCcE-------------EEEecC--------CceeeccCCCcccccccccc
Confidence            8877643 4555566665555554443333211             111111        0111100      1112223


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-------cE
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-------QV  463 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-------~~  463 (519)
                      ..|.+.| ++++|...|.+.++|..+.+++..+..  ...|..|-|+. .+.+|+..+.|..||.|+++.-       .+
T Consensus       159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~  237 (405)
T KOG1273|consen  159 GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEV  237 (405)
T ss_pred             ccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCc
Confidence            3678888 999999999999999999999998873  36788999998 9999999999999999998631       11


Q ss_pred             E---eec--cCCCceEEEEEeeCCCEEEEEecC-CeEEEEECCCCeeeecccc
Q 010037          464 V---DYT--DIREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIKGMQIFDLSTT  510 (519)
Q Consensus       464 ~---~~~--~~~~~V~~v~~spdg~~l~sgs~d-g~v~iwdl~~~~l~~~~~~  510 (519)
                      -   ++.  -.+..=.+++|+.+|.+++.++.. ..++||.-..|.++.+-.+
T Consensus       238 e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG  290 (405)
T KOG1273|consen  238 EPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG  290 (405)
T ss_pred             ChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence            1   011  112223578999999999888754 4599999999988876433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=3.1e-20  Score=186.58  Aligned_cols=256  Identities=18%  Similarity=0.285  Sum_probs=202.9

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEE-ccCCCEEEEEeCCC
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF-SLDGQYLASGGEDG  306 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~LaSgs~Dg  306 (519)
                      ...+..|.+=++.+++.-+++.|++++.|-+|++|+.....     ..+..++..|++-|.|+++ -++...+||||-|+
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~  140 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR  140 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCc
Confidence            34556666777777888899999999999999999987543     1344567889999999999 77888999999999


Q ss_pred             cEEEEecccCee--eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe
Q 010037          307 TVRVWKVIEHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (519)
Q Consensus       307 ~I~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (519)
                      .|.+||+.++..  ...++..    +.......+...++.+......   ...+.++....+.+|+++.    .+.+..+
T Consensus       141 ~IflWDin~~~~~l~~s~n~~----t~~sl~sG~k~siYSLA~N~t~---t~ivsGgtek~lr~wDprt----~~kimkL  209 (735)
T KOG0308|consen  141 KIFLWDINTGTATLVASFNNV----TVNSLGSGPKDSIYSLAMNQTG---TIIVSGGTEKDLRLWDPRT----CKKIMKL  209 (735)
T ss_pred             cEEEEEccCcchhhhhhcccc----ccccCCCCCccceeeeecCCcc---eEEEecCcccceEEecccc----ccceeee
Confidence            999999998743  2222111    1111111334445555544433   4556788889999999986    4557788


Q ss_pred             eccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-
Q 010037          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-  461 (519)
Q Consensus       385 ~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-  461 (519)
                      .||+..|.++..+++| .+++++.||+|+|||+...+|+.++. |...|++++.+| +-.++++|+.||.|..=|+++. 
T Consensus       210 rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  210 RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCch
Confidence            9999999999999999 99999999999999999999999997 999999999999 8999999999999999999985 


Q ss_pred             cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       462 ~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +.........+|..+..+.+.+-+.+++.|+.|+-|...
T Consensus       289 ~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  289 KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             hheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            334455666778888887666666888899999999775

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.84  E-value=5.3e-20  Score=169.10  Aligned_cols=210  Identities=18%  Similarity=0.240  Sum_probs=164.9

Q ss_pred             eeEeecccceeecC-CCCeEEeeecCCeEEEeeCCcccccccccccc--------ceeecCCCCEEEEEEcc-CCCEEEE
Q 010037          232 ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--------QEFLAHEGSILTMKFSL-DGQYLAS  301 (519)
Q Consensus       232 ~~~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~--------~~l~~H~~~I~~l~fsp-dg~~LaS  301 (519)
                      ..|...++++.+.+ .|+++++|+.||.|.|||++............        +.-.+|+-.|.++.|-| |...+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            34556777777776 57899999999999999998654211111111        12346888999999999 6668889


Q ss_pred             EeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037          302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (519)
Q Consensus       302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (519)
                      ++.|.+++|||..+.+....++                                                          
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~----------------------------------------------------------  141 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK----------------------------------------------------------  141 (397)
T ss_pred             ccccceEEEeecccceeeEEee----------------------------------------------------------
Confidence            9999999999998776433322                                                          


Q ss_pred             eEeeccCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          382 HEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       382 ~~~~~h~~~V~~l~~sp~~----~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                           -.+.|..-+|+|-.    ++++|..|-.|++-|+.+|.+-+++. |.+.|.+|.|+|..+-.|++|+.||.|++|
T Consensus       142 -----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlW  216 (397)
T KOG4283|consen  142 -----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLW  216 (397)
T ss_pred             -----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEE
Confidence                 13345556666632    88899999999999999999999996 999999999999777788999999999999


Q ss_pred             EcCCC-c--------------EEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          457 EVRRC-Q--------------VVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       457 d~~~~-~--------------~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      |++.. -              .++ -..|.+.|+.+||+.||.++++++.|..+++|+..+|.-
T Consensus       217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence            99863 1              111 345778899999999999999999999999999987653

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.6e-19  Score=163.45  Aligned_cols=253  Identities=17%  Similarity=0.240  Sum_probs=181.0

Q ss_pred             eeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcEE
Q 010037          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVR  309 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I~  309 (519)
                      ++|.+-+.++.|.+.|+.+|+++.|++|+||+..+...   +..+....+.|.+.|+.|.|.+  -|+.+|+++.|++++
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            45678888999999999999999999999999754332   4445567889999999999966  689999999999999


Q ss_pred             EEecccC---------eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCC------ccc
Q 010037          310 VWKVIEH---------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP------KVF  374 (519)
Q Consensus       310 iWd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~------~~~  374 (519)
                      ||.=...         .....+.-....+..+.|.+.+.+...              ...+.++.+.++..      ..|
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLkl--------------A~~~aDG~lRIYEA~dp~nLs~W  152 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKL--------------AAASADGILRIYEAPDPMNLSQW  152 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEE--------------EEeccCcEEEEEecCCccccccc
Confidence            9985311         112233333444555566665544333              33445555555542      112


Q ss_pred             ccccc---ceeEeeccCCCeeEEEEcCCC----eEEEEeCC-----CcEEEEECCCC--eEEEE--e-cCCCcEEEEEEe
Q 010037          375 RLLEK---PLHEFQGHSSEVLDLSWSKNG----FLLSSSAD-----KTVRLWQVGID--RCLRV--F-SHNNYVTSVAFN  437 (519)
Q Consensus       375 ~~~~~---~~~~~~~h~~~V~~l~~sp~~----~L~sgs~D-----g~V~lWdl~~~--~~~~~--~-~h~~~V~~v~fs  437 (519)
                      .+..+   .+.....+.....|+.|+|..    +|+.|+.+     +.++||....+  +.++.  + .|..+|+.|+|.
T Consensus       153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA  232 (361)
T KOG2445|consen  153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA  232 (361)
T ss_pred             hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence            22111   111223577788999999865    77777766     57889976543  33322  2 399999999999


Q ss_pred             eCCC---CEEEEEeCCCeEEEEEcCCCc--------------------EE-eeccCCCceEEEEEeeCCCEEEEEecCCe
Q 010037          438 PVDD---NYFISGSIDGKVRIWEVRRCQ--------------------VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGN  493 (519)
Q Consensus       438 p~d~---~~l~sgs~Dg~V~iwd~~~~~--------------------~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~  493 (519)
                      |.-|   .+||+++.|| |+||.+....                    .+ .+.+|+..|..+.|+-.|..|++.+.||.
T Consensus       233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~  311 (361)
T KOG2445|consen  233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC  311 (361)
T ss_pred             cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence            9533   4789999999 9999987311                    11 36789999999999999999999999999


Q ss_pred             EEEEECCCC
Q 010037          494 CRFYDIKGM  502 (519)
Q Consensus       494 v~iwdl~~~  502 (519)
                      ||+|...-.
T Consensus       312 VRLWkany~  320 (361)
T KOG2445|consen  312 VRLWKANYN  320 (361)
T ss_pred             eeehhhhhh
Confidence            999987543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.84  E-value=6.7e-20  Score=185.50  Aligned_cols=237  Identities=21%  Similarity=0.280  Sum_probs=190.0

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEE-EEEcc-CCCEEEEEeCCCcE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSL-DGQYLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fsp-dg~~LaSgs~Dg~I  308 (519)
                      +.+|...+..+++.+ +..++++++||++++|+-.....     .....+.+|.+-|.+ +++-+ ++-.|++|+.|.+|
T Consensus        10 l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~-----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQY-----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eccCccchheeEecC-CeEEeecCCCCceeeeeccCccc-----ccceecccCcceeeccceeccccCcceEeecccceE
Confidence            334444444445444 44788999999999998753322     222456788888877 88876 55569999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      .+|.+.+......+..|+..+.++......                 ..++++.+.+..+|....      ....+.+|.
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-----------------~~iSgSWD~TakvW~~~~------l~~~l~gH~  140 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-----------------TLISGSWDSTAKVWRIGE------LVYSLQGHT  140 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcC-----------------ceEecccccceEEecchh------hhcccCCcc
Confidence            999999999888888877765554422211                 145777888888887653      345589999


Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec
Q 010037          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~  467 (519)
                      ..|+.++.-|.+.++|||.|++|++|.-  ++++++|. |.+.|+.+++-|  +..|++++.||.|++|++....+..+.
T Consensus       141 asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~  216 (745)
T KOG0301|consen  141 ASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMH  216 (745)
T ss_pred             hheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeee
Confidence            9999999999999999999999999974  78888886 999999999987  557889999999999999666666899


Q ss_pred             cCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       468 ~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +|...|+++...+++..+++++.|++++||+..
T Consensus       217 ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  217 GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            999999999988888999999999999999986

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.9e-19  Score=167.14  Aligned_cols=213  Identities=19%  Similarity=0.352  Sum_probs=155.3

Q ss_pred             ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee----ceeeccCCCCceEEEeecCCCCeEEeeccCCc
Q 010037          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK  351 (519)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (519)
                      ....+++|.+.|++|+|+.||++|||++.|++|+||++..-...    ...+.....++.+.|.++-...++.+. ...+
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~-~g~~  156 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK-RGNK  156 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc-cCCE
Confidence            33468999999999999999999999999999999999754321    112233345667777777666665554 2222


Q ss_pred             eeeeeeec---cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-
Q 010037          352 IDKTKSLR---KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-  426 (519)
Q Consensus       352 ~~~~~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-  426 (519)
                      +..+....   ++.....+-|+.         .+--+.|...|..+-...++ +|++++.|.+|.||+++ |+.+..+. 
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt  226 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT  226 (420)
T ss_pred             EEEEEeeecccCCCCcccccccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence            21111111   111111111111         11223467777777777777 99999999999999999 88888775 


Q ss_pred             CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC---CC------cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR---RC------QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (519)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~---~~------~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw  497 (519)
                      ....-+..+.+| +|+++++++.---|++|.+-   .+      ++..+.+|...|.++||+|+...+++.+.||+++||
T Consensus       227 nq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw  305 (420)
T KOG2096|consen  227 NQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW  305 (420)
T ss_pred             ccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence            444567788999 99999999999999999963   22      244689999999999999999999999999999999


Q ss_pred             ECC
Q 010037          498 DIK  500 (519)
Q Consensus       498 dl~  500 (519)
                      |+.
T Consensus       306 dtd  308 (420)
T KOG2096|consen  306 DTD  308 (420)
T ss_pred             ecc
Confidence            985

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=3.9e-21  Score=195.08  Aligned_cols=192  Identities=23%  Similarity=0.430  Sum_probs=172.5

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+++|...+.++.|++...+|++|+.+|+|++||+...+       ..+++.+|...|..+.|+|-+.|.|+|+.|+.++
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~  137 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLK  137 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-------hhhhhhccccCcceeeeccceEEeccccccccce
Confidence            478999999999999999999999999999999998433       2346889999999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +||++...|                                                              .+.+.+|..
T Consensus       138 iwD~Rk~Gc--------------------------------------------------------------~~~~~s~~~  155 (825)
T KOG0267|consen  138 IWDIRKKGC--------------------------------------------------------------SHTYKSHTR  155 (825)
T ss_pred             ehhhhccCc--------------------------------------------------------------eeeecCCcc
Confidence            999875443                                                              455678999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-e
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y  466 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~  466 (519)
                      .|.++.|+|+| +++.++.|.+++|||+..++.+..|. |...+..+.|+| ..-++++|+.|++|++||+++.+++. .
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeecc
Confidence            99999999999 99999999999999999999999998 999999999999 88899999999999999999988884 4


Q ss_pred             ccCCCceEEEEEeeCCCEEEEEecC
Q 010037          467 TDIREIVSAVCYCPDGKGGIVGTMT  491 (519)
Q Consensus       467 ~~~~~~V~~v~~spdg~~l~sgs~d  491 (519)
                      ......|.+.+|+|+|..+++|...
T Consensus       235 ~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  235 KPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CCccCCceeeeecCCceeeecCchh
Confidence            4557889999999999988887755

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=7.1e-19  Score=183.26  Aligned_cols=240  Identities=16%  Similarity=0.181  Sum_probs=183.1

Q ss_pred             eEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      .|..+...++|.|+|.+|++++.||.|++|+......+.      ..+.-|...|.+++-.  +.+|++|+.+++|.+|.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P------~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP------ETIDISGELVSSIACY--SNHFLTGSEQNTVLRYK   82 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC------chhhccCceeEEEeec--ccceEEeeccceEEEee
Confidence            455566679999999999999999999999976542221      1223377788877764  55899999999999999


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      +.+++.-..+..-..+..++.+..++.                ....++.+..+.+.+...    ......+.+|.++|.
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v~g~g~----------------~iaagsdD~~vK~~~~~D----~s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAVSGSGK----------------MIAAGSDDTAVKLLNLDD----SSQEKVLRGHDAPVL  142 (933)
T ss_pred             CCCCCccceeeeeeccceEEEEecCCc----------------EEEeecCceeEEEEeccc----cchheeecccCCcee
Confidence            988875544444444455555544332                223344455554444332    234677899999999


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       393 ~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      ++.|+|++ +|++.+-||+|++||+.++.+..++.         ....+..++|+| ++..|+.-..|+.|++|+..+..
T Consensus       143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWE  221 (933)
T ss_pred             eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCce
Confidence            99999999 99999999999999999998877764         245678899999 77777777889999999999887


Q ss_pred             EE---eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          463 VV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       463 ~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      ..   ....+...++.++|+|.|+|||+++.||.|.|||+.+
T Consensus       222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            65   2334455599999999999999999999999999985

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.5e-19  Score=167.63  Aligned_cols=256  Identities=14%  Similarity=0.163  Sum_probs=201.5

Q ss_pred             ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeC------Ccccc--------c--cc-------------c----
Q 010037          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPV------KKQSR--------E--LS-------------S----  273 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~------~~~~~--------~--~~-------------~----  273 (519)
                      .+..+++|...++++.|++.+.++++++.|++-.||..      .....        +  .+             .    
T Consensus       182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti  261 (481)
T KOG0300|consen  182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI  261 (481)
T ss_pred             ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence            34567889999999999999999999999999999973      21100        0  00             0    


Q ss_pred             ccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCcee
Q 010037          274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID  353 (519)
Q Consensus       274 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (519)
                      ......|.+|.+.|.+..|-..|+.+++++.|.+..+||+++++.+..+..+....+.+...+..               
T Consensus       262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ---------------  326 (481)
T KOG0300|consen  262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ---------------  326 (481)
T ss_pred             eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc---------------
Confidence            01123578999999999999999999999999999999999999998888877655443332221               


Q ss_pred             eeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCC-eEEEEecCCCcEE
Q 010037          354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFSHNNYVT  432 (519)
Q Consensus       354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~-~~~~~~~h~~~V~  432 (519)
                       ...++.+.+.+..+|+.+-   ....+..|+||...|++..|..+..+++|+.|.+|+|||+++. .++.++....+++
T Consensus       327 -rLVvTsSrDtTFRLWDFRe---aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N  402 (481)
T KOG0300|consen  327 -RLVVTSSRDTTFRLWDFRE---AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN  402 (481)
T ss_pred             -eEEEEeccCceeEeccchh---hcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence             1223445566666676541   2244677999999999999999889999999999999999864 6788888899999


Q ss_pred             EEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-----eccCCCceEEEEEeeCC--CEEEEEecCCeEEEEECCCC
Q 010037          433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-----YTDIREIVSAVCYCPDG--KGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       433 ~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-----~~~~~~~V~~v~~spdg--~~l~sgs~dg~v~iwdl~~~  502 (519)
                      .++.+. .+.+++.--.+..|++||++..++..     ..+|..+|++++|..+.  .-|++++.|..+.-|.+...
T Consensus       403 Rvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  403 RVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            999998 77788888888999999999876653     45789999999998654  34889999999999998653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.83  E-value=2.4e-19  Score=162.87  Aligned_cols=207  Identities=19%  Similarity=0.305  Sum_probs=166.6

Q ss_pred             eeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeee
Q 010037          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (519)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (519)
                      .++||..+|+.|+++.+|.+|++|+.|.++.+|--..|+.+.++..|...+.|+......                ...+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s----------------~~li   68 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS----------------KHLI   68 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc----------------ceee
Confidence            368999999999999999999999999999999999999998888888777766554332                2346


Q ss_pred             ccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe-----CCCcEEEEECC-------CCeEEEEe
Q 010037          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-----ADKTVRLWQVG-------IDRCLRVF  425 (519)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs-----~Dg~V~lWdl~-------~~~~~~~~  425 (519)
                      +++.+..+.+|+...     ......-.-..+|..+.|+++| +++.+.     ..+.|.++|++       ..++...+
T Consensus        69 TGSAD~t~kLWDv~t-----Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI  143 (327)
T KOG0643|consen   69 TGSADQTAKLWDVET-----GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI  143 (327)
T ss_pred             eccccceeEEEEcCC-----CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence            778888888887764     2333333456788899999998 333333     23568888887       44544444


Q ss_pred             -cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-e-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          426 -SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       426 -~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                       .+.+.++.+-|.| -+.+|++|..||.|.+||+++++.+ . ...|...|+.++++||..++++++.|.+-++||+.+.
T Consensus       144 ~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  144 PTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             cCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence             4778999999999 8999999999999999999998655 3 4678889999999999999999999999999999998


Q ss_pred             eeeec
Q 010037          503 QIFDL  507 (519)
Q Consensus       503 ~l~~~  507 (519)
                      +++..
T Consensus       223 ~v~Kt  227 (327)
T KOG0643|consen  223 EVLKT  227 (327)
T ss_pred             eeEEE
Confidence            87654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=4.9e-19  Score=171.62  Aligned_cols=253  Identities=18%  Similarity=0.264  Sum_probs=175.8

Q ss_pred             CeeeEeecccceeecCCCC--eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCC
Q 010037          230 AMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG  306 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~--~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg  306 (519)
                      .++.+..++.+++|+|...  ++|+|..-|+|-+||+....+.....   ..+..|.++|.+|.|+| +...+++.+.||
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCc
Confidence            3455667888899999765  78999999999999996333322222   24678999999999999 446888999999


Q ss_pred             cEEEEecccCeeeceeeccCCC--CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe
Q 010037          307 TVRVWKVIEHERLDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (519)
                      +|++-|+..+..-..+......  ...+.+.......++                +..-+...+|+.++-   +.....+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~----------------~~~~G~f~~iD~R~~---~s~~~~~  318 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF----------------GDNVGNFNVIDLRTD---GSEYENL  318 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEE----------------eecccceEEEEeecC---Cccchhh
Confidence            9999999876543333322111  111111111111111                111112233333221   2224445


Q ss_pred             eccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe-----EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 010037          385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (519)
Q Consensus       385 ~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~-----~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd  457 (519)
                      .-|...|..|+++|..  +|+|++.|++++|||++.-.     .+.++.|...|.+..|+|.+++ |++.+.|..|+|||
T Consensus       319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFD  397 (498)
T ss_pred             hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEee
Confidence            6688899999999988  99999999999999998532     3566679999999999995555 99999999999999


Q ss_pred             cC----CCcEEeeccCC----Cc--eEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          458 VR----RCQVVDYTDIR----EI--VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       458 ~~----~~~~~~~~~~~----~~--V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ..    .-.....+.|.    ..  .....|.|+..++++|-.-..|-|||-.+++++
T Consensus       398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v  455 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV  455 (498)
T ss_pred             cccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEe
Confidence            84    22222222222    22  345789999999999999999999999999843

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1.7e-19  Score=178.94  Aligned_cols=238  Identities=22%  Similarity=0.353  Sum_probs=187.8

Q ss_pred             hhhhhhccccccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccc-cccccccceeecCCCCEEEEEEc
Q 010037          215 DAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFS  293 (519)
Q Consensus       215 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fs  293 (519)
                      ..++...+.|..++ ++..|.+.+..++|+|....|++++.||.|++|++.+.... ...+....+|.+|.++|.|+++.
T Consensus       275 ~~k~a~~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~  353 (577)
T KOG0642|consen  275 DLKKAFTKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP  353 (577)
T ss_pred             hhhhhhheecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec
Confidence            34455566787777 78888999999999999999999999999999999542211 12344556799999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc
Q 010037          294 LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV  373 (519)
Q Consensus       294 pdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  373 (519)
                      +++..+++||.||+|+.|++....-  -....                                            ++  
T Consensus       354 ~n~~~~ysgg~Dg~I~~w~~p~n~d--p~ds~--------------------------------------------dp--  385 (577)
T KOG0642|consen  354 SNGEHCYSGGIDGTIRCWNLPPNQD--PDDSY--------------------------------------------DP--  385 (577)
T ss_pred             CCceEEEeeccCceeeeeccCCCCC--ccccc--------------------------------------------Cc--
Confidence            9999999999999999999852211  00000                                            00  


Q ss_pred             ccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-------------------------------
Q 010037          374 FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-------------------------------  421 (519)
Q Consensus       374 ~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~-------------------------------  421 (519)
                          ......+.||.+.|+.+++++.. .|++++.||+|++|+.....+                               
T Consensus       386 ----~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~  461 (577)
T KOG0642|consen  386 ----SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRF  461 (577)
T ss_pred             ----chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccc
Confidence                01134578999999999999988 999999999999998754433                               


Q ss_pred             -------------EEEec--------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEe
Q 010037          422 -------------LRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYC  479 (519)
Q Consensus       422 -------------~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~s  479 (519)
                                   +..+.        -...++-|.++| ...+.+++..|+.|+++|..++.++ ....|...++++++.
T Consensus       462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~  540 (577)
T KOG0642|consen  462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAID  540 (577)
T ss_pred             ccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecceeec
Confidence                         00110        113466788888 7889999999999999999999988 578899999999999


Q ss_pred             eCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          480 PDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       480 pdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      |+|.+|++++.||.+++|.+....+.+
T Consensus       541 ~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  541 PNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             CCCceEEeecCCceeehhhccchheee
Confidence            999999999999999999987655543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1e-19  Score=186.12  Aligned_cols=214  Identities=17%  Similarity=0.271  Sum_probs=164.9

Q ss_pred             eeeEe-ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcE
Q 010037          231 MARII-DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~-~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I  308 (519)
                      +.|+. ...+.++..++-..++.++. ..++|+.+........-....+.-+.-.-.+..|+|.. +.++|||++..|.|
T Consensus        34 ~~~~~k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i  112 (839)
T KOG0269|consen   34 MNCKLKAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVI  112 (839)
T ss_pred             eeeecccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcE
Confidence            44433 34445788888888888765 45777777643322210000000001112456788876 56899999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      .+||+.....                                                           ++.+..|..|.
T Consensus       113 ~vWdlnk~~r-----------------------------------------------------------nk~l~~f~EH~  133 (839)
T KOG0269|consen  113 SVWDLNKSIR-----------------------------------------------------------NKLLTVFNEHE  133 (839)
T ss_pred             EEEecCcccc-----------------------------------------------------------chhhhHhhhhc
Confidence            9999854210                                                           12345577899


Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-
Q 010037          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (519)
Q Consensus       389 ~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-  464 (519)
                      ..++++.|++..  +|++|+.||+|++||++..+-..++. ....|..|+|+|..+++|+++...|.|++||++....- 
T Consensus       134 Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~  213 (839)
T KOG0269|consen  134 RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE  213 (839)
T ss_pred             cceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH
Confidence            999999999976  99999999999999999988877775 77889999999988999999999999999999986533 


Q ss_pred             -eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       465 -~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                       ++..|.++|.++.|+|++.+||+|+.|+.|+|||+.+++.
T Consensus       214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence             6899999999999999999999999999999999987654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1.1e-18  Score=161.73  Aligned_cols=235  Identities=18%  Similarity=0.225  Sum_probs=162.3

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~  314 (519)
                      .+.+.++.|+|.+..|++++.||.+++|++......        ....|..++.+++|.++ ..+++|+.||.|+.+|+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--------~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--------LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN   83 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--------hheecCCceeeeeccCC-ceEEEeccCceEEEEEec
Confidence            477888999999999999999999999999865321        12358999999999874 468999999999999998


Q ss_pred             cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (519)
                      ++... .+..+...+.|+......                -..+.++.+..+.+|+++.     +....-......|.++
T Consensus        84 ~~~~~-~igth~~~i~ci~~~~~~----------------~~vIsgsWD~~ik~wD~R~-----~~~~~~~d~~kkVy~~  141 (323)
T KOG1036|consen   84 TGNED-QIGTHDEGIRCIEYSYEV----------------GCVISGSWDKTIKFWDPRN-----KVVVGTFDQGKKVYCM  141 (323)
T ss_pred             CCcce-eeccCCCceEEEEeeccC----------------CeEEEcccCccEEEEeccc-----cccccccccCceEEEE
Confidence            87632 333444455555544221                1234566677777777654     2222222234455555


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-----EEe
Q 010037          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-----VVD  465 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-----~~~  465 (519)
                      .  -.+ .|+.|+.|..|.+||+++........   .+..+.||++.| ++.=+++++.||.|.+=.+...+     ...
T Consensus       142 ~--v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkya  218 (323)
T KOG1036|consen  142 D--VSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA  218 (323)
T ss_pred             e--ccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhcee
Confidence            3  344 77777777888888877665444222   455677888888 66667777778877776555431     111


Q ss_pred             eccCC---------CceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          466 YTDIR---------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       466 ~~~~~---------~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +..|.         .+|++++|+|--+.|+||+.||.|.+||+.+.+
T Consensus       219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK  265 (323)
T KOG1036|consen  219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK  265 (323)
T ss_pred             EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence            22222         369999999998899999999999999998765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.82  E-value=4.9e-19  Score=173.64  Aligned_cols=242  Identities=14%  Similarity=0.184  Sum_probs=179.2

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCcccc--------ccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCC
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--------ELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDG  306 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~--------~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg  306 (519)
                      ..++++.|+|.|.+|++.+..-+.+|+|-.....        .+..+   ..-+||...++|.+|+|.. ..++|++.||
T Consensus       215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm---~nTKGHia~lt~g~whP~~k~~FlT~s~Dg  291 (641)
T KOG0772|consen  215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDM---YNTKGHIAELTCGCWHPDNKEEFLTCSYDG  291 (641)
T ss_pred             cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhh---hccCCceeeeeccccccCcccceEEecCCC
Confidence            4566789999999999999999999998764321        11111   2347999999999999954 5889999999


Q ss_pred             cEEEEecccCeeec-eeecc-----CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037          307 TVRVWKVIEHERLD-GFDVQ-----DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (519)
Q Consensus       307 ~I~iWd~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (519)
                      ++|||++...+... .+...     ...++.+.|....                .....+..++.+.+|+...+.. ...
T Consensus       292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg----------------~~iAagc~DGSIQ~W~~~~~~v-~p~  354 (641)
T KOG0772|consen  292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG----------------KLIAAGCLDGSIQIWDKGSRTV-RPV  354 (641)
T ss_pred             cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc----------------chhhhcccCCceeeeecCCccc-ccc
Confidence            99999997654322 22111     1122233333222                1245667788888888644332 223


Q ss_pred             eeEeeccCC--CeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-eEEEEec---CCCcEEEEEEeeCCCCEEEEEeC----
Q 010037          381 LHEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFS---HNNYVTSVAFNPVDDNYFISGSI----  449 (519)
Q Consensus       381 ~~~~~~h~~--~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~-~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~----  449 (519)
                      .+.-++|..  .|+||+|+++| +|++-+.|.++++||++.. +++.+..   ....-+.++|+| +..+|++|..    
T Consensus       355 ~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~  433 (641)
T KOG0772|consen  355 MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNG  433 (641)
T ss_pred             eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCC
Confidence            444567887  99999999999 9999999999999999864 5555553   455678899999 9999999864    


Q ss_pred             --CCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          450 --DGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       450 --Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                        -|++.+||..+-..+. +.-....|..+.|+|--+.|.+|+.||.+++|-
T Consensus       434 ~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  434 MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence              4689999999988774 444467789999999999999999999999874

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=4.1e-19  Score=171.66  Aligned_cols=194  Identities=20%  Similarity=0.281  Sum_probs=159.7

Q ss_pred             CCCeEEeeecCCeEEEeeCCcccccccccccc--------------ceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEE
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--------------QEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRV  310 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~--------------~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~i  310 (519)
                      -|+++|.|+.+-.|.|||+.-....+..+...              ..-.+|++.|..|.|+.+- +.|||||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            46799999999999999997544333222211              1234799999999998854 58999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ||+.++++.                                                              .++..|.+.
T Consensus       271 WD~~~g~p~--------------------------------------------------------------~s~~~~~k~  288 (463)
T KOG0270|consen  271 WDVDTGKPK--------------------------------------------------------------SSITHHGKK  288 (463)
T ss_pred             EEcCCCCcc--------------------------------------------------------------eehhhcCCc
Confidence            999988753                                                              334568899


Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEE-e
Q 010037          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-D  465 (519)
Q Consensus       391 V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~-~  465 (519)
                      |.+++|+|..  .|++|+.|++|.+.|.+.. ..-..++..+.|-.++|+|.....++++..||+|+-+|+|+. +++ .
T Consensus       289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt  368 (463)
T KOG0270|consen  289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT  368 (463)
T ss_pred             eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence            9999999987  9999999999999999953 333455678889999999988899999999999999999986 555 6


Q ss_pred             eccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCC
Q 010037          466 YTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~  501 (519)
                      ...|.+.|.++++++.- .+|++++.|+.|++|++..
T Consensus       369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            88999999999999855 4688899999999999864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=1.4e-19  Score=170.69  Aligned_cols=239  Identities=20%  Similarity=0.249  Sum_probs=186.1

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      ..+.+|.+.|..++++.  ..+++++.|.+|+.|.+...        ..+++.+ ...+..|.-+..+..+||||++  |
T Consensus       103 ~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~--------p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i  169 (433)
T KOG0268|consen  103 RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP--------PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--I  169 (433)
T ss_pred             heeecccCceeeEEecc--cceEEecCCcceeeeeccCC--------cceeeec-cccccccccccccccccccCce--e
Confidence            35667777777777776  67788889999999998752        2223333 4566777777777889999875  9


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      .|||......+..+......+.++.+.+.....+.               .+..+..+++++.+......+.+..     
T Consensus       170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa---------------s~~sDrsIvLyD~R~~~Pl~KVi~~-----  229 (433)
T KOG0268|consen  170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA---------------SCASDRSIVLYDLRQASPLKKVILT-----  229 (433)
T ss_pred             eecccccCCccceeecCCCceeEEecCCCcchhee---------------eeccCCceEEEecccCCccceeeee-----
Confidence            99999988888888887777788887777655444               3345667777877765444333332     


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      ..-+.|+|+|.+ .+++|+.|..++.||++.- .++..+. |.+.|.+|.|+| .|+-|++||.|.+||||.++.+..-.
T Consensus       230 mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRd  308 (433)
T KOG0268|consen  230 MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRD  308 (433)
T ss_pred             ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-CcchhccccccceEEEeecCCCcchh
Confidence            345789999977 8999999999999999864 4555554 999999999999 99999999999999999999876553


Q ss_pred             --eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          466 --YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       466 --~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                        ...--..|.++.|+.|.+++++|+.|+.|++|...-
T Consensus       309 iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  309 IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence              333345699999999999999999999999998753

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.81  E-value=9.4e-20  Score=163.96  Aligned_cols=244  Identities=17%  Similarity=0.249  Sum_probs=195.0

Q ss_pred             Eeecccceeec---CCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          234 IIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       234 ~~~~~~~~~~s---p~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      |..+|..++|+   |+|-+|+++++|+.-.+.+-+.+...       -+|.+|++.|+...++.+...-|+++.|-+.+|
T Consensus        13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi-------gtfeghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen   13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI-------GTFEGHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE-------EeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence            34555566665   68999999999998888776654432       368999999999999999989999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ||..++..+..+.. ...+..+.|..+...                .++++.+..+.+++.+.   ...|..++.+|.+.
T Consensus        86 w~a~tgdelhsf~h-khivk~~af~~ds~~----------------lltgg~ekllrvfdln~---p~App~E~~ghtg~  145 (334)
T KOG0278|consen   86 WDAVTGDELHSFEH-KHIVKAVAFSQDSNY----------------LLTGGQEKLLRVFDLNR---PKAPPKEISGHTGG  145 (334)
T ss_pred             hhhhhhhhhhhhhh-hheeeeEEecccchh----------------hhccchHHHhhhhhccC---CCCCchhhcCCCCc
Confidence            99999987776643 233344444433322                23344444444444332   23566778999999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccC
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI  469 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~  469 (519)
                      |..+.|.... .+++++.|++||+||.+++..++.+..+..|+++.+++ ++.+|.++ ..+.|.+||..+..+++....
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~~lKs~k~  223 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFGLLKSYKM  223 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEe-cCceeEEeccccccceeeccC
Confidence            9999999877 88898999999999999999999999999999999999 88877664 567899999999999988888


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ...|.+..++|+...+++|+.|+.++.||..++.-+.
T Consensus       224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~  260 (334)
T KOG0278|consen  224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG  260 (334)
T ss_pred             ccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence            8899999999999999999999999999998876443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=2.6e-19  Score=171.30  Aligned_cols=170  Identities=26%  Similarity=0.449  Sum_probs=149.3

Q ss_pred             cccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCce
Q 010037          273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI  352 (519)
Q Consensus       273 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (519)
                      +.+..+.+..|++.|+-+.||++|+||||++.|.+..||++.....                                  
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----------------------------------  258 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----------------------------------  258 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----------------------------------
Confidence            3445577899999999999999999999999999999999743321                                  


Q ss_pred             eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCC--C
Q 010037          353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--N  429 (519)
Q Consensus       353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~--~  429 (519)
                                               -+..+++.+|..+|.-+.|+|+. +|++|+.|..+++||+.++.+...+++.  .
T Consensus       259 -------------------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~  313 (519)
T KOG0293|consen  259 -------------------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGF  313 (519)
T ss_pred             -------------------------eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCC
Confidence                                     02367788999999999999999 9999999999999999999999999854  8


Q ss_pred             cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC-CceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       430 ~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      .+.+++|.| |+..|++|+.|+++..||+.....-.|.+.. ..|..++.++||+++++.+.|..|++|+..+.
T Consensus       314 S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~  386 (519)
T KOG0293|consen  314 SVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR  386 (519)
T ss_pred             CcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence            899999999 9999999999999999999877766666654 45899999999999999999999999998754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.81  E-value=1.3e-17  Score=163.36  Aligned_cols=263  Identities=20%  Similarity=0.242  Sum_probs=190.6

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecC-CCCEEEEEEccCCCEEEEEeCCCc
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDGT  307 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~LaSgs~Dg~  307 (519)
                      +.+++..+.+..++|+|.+..++.....+.+..|+.........    ...+..+ ++-|.||+|.++|+ ++||..+|.
T Consensus       194 ~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~----~~~fek~ekk~Vl~v~F~engd-viTgDS~G~  268 (626)
T KOG2106|consen  194 GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR----QGIFEKREKKFVLCVTFLENGD-VITGDSGGN  268 (626)
T ss_pred             CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE----eeccccccceEEEEEEEcCCCC-EEeecCCce
Confidence            44666777777789999999888888899999998876543211    1123333 36799999999997 679999999


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecC-------CCCeEEeeccCCceeeeee----------eccCCCeeEEEeC
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINH-------LSQLIPIDVDKEKIDKTKS----------LRKSSDLTCVVLP  370 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----------~~~s~~~~~~~~~  370 (519)
                      |.||+..+.+..+....++..+.++....+.       ...+..++....+......          ..+..+  +++-.
T Consensus       269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGT  346 (626)
T KOG2106|consen  269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILVGT  346 (626)
T ss_pred             EEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCc--EEEee
Confidence            9999998888777777777776666554332       1122222211111110000          011111  22222


Q ss_pred             Cccccc----cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE
Q 010037          371 PKVFRL----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       371 ~~~~~~----~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~  445 (519)
                      .+.+-+    .........+|....+.++.+|+. .++|++.|+.|+||+  ..+++-+.....++.|+.|+| .+ .+|
T Consensus       347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va  422 (626)
T KOG2106|consen  347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVA  422 (626)
T ss_pred             ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEE
Confidence            222111    122234567899999999999998 999999999999999  566666666788999999999 67 999


Q ss_pred             EEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       446 sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      .|+..|...+.|..+...+.......+++.+.|+|+|.+||+|+.|+.|+||-+..+
T Consensus       423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            999999999999999888876666999999999999999999999999999988643

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.81  E-value=3.4e-19  Score=174.05  Aligned_cols=245  Identities=18%  Similarity=0.255  Sum_probs=194.9

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      ..|.+++++...+++.+|++ |-|+|||+........ . ..-....-..-|.++.+.|||+.|++|++-.++.|||+..
T Consensus       420 EvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~P-v-sqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa  496 (705)
T KOG0639|consen  420 EVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSP-V-SQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA  496 (705)
T ss_pred             cEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCc-c-ccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence            33445788889999999875 7899999985432111 0 0001122456799999999999999999999999999977


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      ...............|.++..+...              ...+....++.+.+|+.+.    ...+..|+||...+.||.
T Consensus       497 pTprikaeltssapaCyALa~spDa--------------kvcFsccsdGnI~vwDLhn----q~~VrqfqGhtDGascId  558 (705)
T KOG0639|consen  497 PTPRIKAELTSSAPACYALAISPDA--------------KVCFSCCSDGNIAVWDLHN----QTLVRQFQGHTDGASCID  558 (705)
T ss_pred             CCcchhhhcCCcchhhhhhhcCCcc--------------ceeeeeccCCcEEEEEccc----ceeeecccCCCCCceeEE
Confidence            6654443433333444333322222              1224456677888888775    345788999999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE
Q 010037          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS  474 (519)
Q Consensus       396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~  474 (519)
                      .+++| .|.||+.|.+||-||+++++.+......+.|.++-.+| .+.+++.|-.++.|.|......+...+..|..-|.
T Consensus       559 is~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVL  637 (705)
T KOG0639|consen  559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVL  637 (705)
T ss_pred             ecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccEEE
Confidence            99999 99999999999999999999988888889999999999 99999999999999999999888888999999999


Q ss_pred             EEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          475 AVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       475 ~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      ++.|.+-|+++++.+.|..+..|.+.-|
T Consensus       638 SlKFa~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  638 SLKFAYCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             EEEecccCceeeecCchhhhhhccCccc
Confidence            9999999999999999999999988644

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=4.9e-19  Score=172.82  Aligned_cols=195  Identities=17%  Similarity=0.268  Sum_probs=166.2

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~  319 (519)
                      |++......++++|+..+.|+|||++.       ..+.+.+++|+..|++|.++....|||+++..|-|.|..+.++...
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-------kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t  156 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRA-------KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT  156 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHH-------HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence            455555668999999999999999872       2234557899999999999999999999999999999998877643


Q ss_pred             ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (519)
                      ..+..                                                             +....|.-+.|+|.
T Consensus       157 t~f~~-------------------------------------------------------------~sgqsvRll~ys~s  175 (673)
T KOG4378|consen  157 TTFTI-------------------------------------------------------------DSGQSVRLLRYSPS  175 (673)
T ss_pred             cceec-------------------------------------------------------------CCCCeEEEeecccc
Confidence            33221                                                             11233557888987


Q ss_pred             C--eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEE
Q 010037          400 G--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA  475 (519)
Q Consensus       400 ~--~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~  475 (519)
                      .  +|.+++.+|.|.|||+....++..+.  |..+...|+|+|.+..+|++.+.|.+|.+||++..+.........+.++
T Consensus       176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plst  255 (673)
T KOG4378|consen  176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLST  255 (673)
T ss_pred             cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcce
Confidence            7  88899999999999999998888775  9999999999998899999999999999999998888777777889999


Q ss_pred             EEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          476 VCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       476 v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      ++|.++|.+|+.|+..|.|..||++..
T Consensus       256 vaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  256 VAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             eeecCCceEEEeecCCceEEEEecccC
Confidence            999999999999999999999999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=1.2e-18  Score=168.40  Aligned_cols=256  Identities=16%  Similarity=0.163  Sum_probs=188.2

Q ss_pred             ccCCCcccccccccCCCCCCccccccCCcccccccc-chhhhhhhhccccccccCCeeeEeecccceeecCCC-CeEEee
Q 010037          176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESR-DLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGD-HELTLG  253 (519)
Q Consensus       176 ~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp~g-~~lasg  253 (519)
                      .-+.|+++++..|++.+-     ||.|--+...... .+.....+++..-.++.....+|.+.+-.++|+..- +.||+|
T Consensus       188 ~~~~gNyvAiGtmdp~Ie-----IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg  262 (463)
T KOG0270|consen  188 SGGAGNYVAIGTMDPEIE-----IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG  262 (463)
T ss_pred             CCCCcceEEEeccCceeE-----EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec
Confidence            445588999999999888     9987666544332 222222222222223444566788888778877754 467889


Q ss_pred             ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceE
Q 010037          254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL  332 (519)
Q Consensus       254 s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  332 (519)
                      +.|.+|++||+..++.       .+.+..|.+.|.++.|+| ...+|++|+.|++|++.|.+.....           ..
T Consensus       263 saD~TV~lWD~~~g~p-------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-----------~~  324 (463)
T KOG0270|consen  263 SADKTVKLWDVDTGKP-------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-----------GK  324 (463)
T ss_pred             CCCceEEEEEcCCCCc-------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-----------Cc
Confidence            9999999999986553       345678999999999999 5679999999999999998742210           00


Q ss_pred             EEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCc
Q 010037          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKT  410 (519)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~  410 (519)
                      .|                                                   .-.+.|-.++|.|..  .+++++.||+
T Consensus       325 ~w---------------------------------------------------k~~g~VEkv~w~~~se~~f~~~tddG~  353 (463)
T KOG0270|consen  325 EW---------------------------------------------------KFDGEVEKVAWDPHSENSFFVSTDDGT  353 (463)
T ss_pred             eE---------------------------------------------------EeccceEEEEecCCCceeEEEecCCce
Confidence            00                                                   124568889999987  8889999999


Q ss_pred             EEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC---CceEEEEEeeCCC-E
Q 010037          411 VRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR---EIVSAVCYCPDGK-G  484 (519)
Q Consensus       411 V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~---~~V~~v~~spdg~-~  484 (519)
                      |+-+|++.. +++.++. |.+.|.+|++++...+++++++.|+.|++|++.....-....|.   +...+.++.|+-. .
T Consensus       354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~  433 (463)
T KOG0270|consen  354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFT  433 (463)
T ss_pred             EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceE
Confidence            999999976 7887776 99999999999988899999999999999998754332211111   2255666777653 5


Q ss_pred             EEEEecCCeEEEEECCCCeee
Q 010037          485 GIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       485 l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |+.|+..+.++|||+.++.-.
T Consensus       434 la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  434 LAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             EEecCccceEEEeecccChhH
Confidence            777888889999999876543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=1.6e-18  Score=157.08  Aligned_cols=241  Identities=17%  Similarity=0.265  Sum_probs=174.2

Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeecee--eccCCCCceEEEeecCCCCeEEeeccCCcee--
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKID--  353 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  353 (519)
                      +++++|.+.|.+|+|+.+|..|++|+.|+++++|++........+  ..+...+..+.+.+.++..++....+.....  
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            467889999999999999999999999999999999877655444  3344445556666666665555443322110  


Q ss_pred             -----eeeeeccCCCeeEEEeCCcc-ccc-------------cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEE
Q 010037          354 -----KTKSLRKSSDLTCVVLPPKV-FRL-------------LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRL  413 (519)
Q Consensus       354 -----~~~~~~~s~~~~~~~~~~~~-~~~-------------~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~l  413 (519)
                           ....+........+.|.+.. .-.             ....+..-......+.-++|+.++ .++.....|+|.|
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence                 01111111122222222211 000             001111112234567888998777 6666666799999


Q ss_pred             EECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecC
Q 010037          414 WQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMT  491 (519)
Q Consensus       414 Wdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~d  491 (519)
                      .....-+++..+. |+....||.|+| +|+|||+|+.|..+.+||+..--++ .+..+.-+|..+.|+.||++||+|+.|
T Consensus       174 LsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  174 LSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             EeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence            9999989988886 999999999999 9999999999999999999987766 467788899999999999999999999


Q ss_pred             CeEEEEECCCC-eeeeccccceeEEecCC
Q 010037          492 GNCRFYDIKGM-QIFDLSTTAYLFALLGH  519 (519)
Q Consensus       492 g~v~iwdl~~~-~l~~~~~~~~~~~l~GH  519 (519)
                      -.|-|=++++| ++++++...+.++.+-|
T Consensus       253 h~IDIA~vetGd~~~eI~~~~~t~tVAWH  281 (313)
T KOG1407|consen  253 HFIDIAEVETGDRVWEIPCEGPTFTVAWH  281 (313)
T ss_pred             ceEEeEecccCCeEEEeeccCCceeEEec
Confidence            99999999887 57788877777777665

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=1.2e-18  Score=159.85  Aligned_cols=279  Identities=17%  Similarity=0.259  Sum_probs=196.6

Q ss_pred             cCCcceeeeecCCCceeEEccCCCchhhhhhcccccCC---CcccccccccCCCC----CCccccccCCccccc-cccch
Q 010037          142 KDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPG----SSSSFVQPLPSRQDE-ESRDL  213 (519)
Q Consensus       142 ~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~l~~v~~---~~~l~~~~f~~~~~----~s~~~v~~l~~~~~~-~~~~~  213 (519)
                      .+|.++.|+-.+.|.++..+.++.  +.++  |+.+..   ++.|-...|..+-+    .+.. +|.+...-.. .... 
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h--~agE--vw~las~P~d~~ilaT~yn~~s~s~vl~~aa-iw~ipe~~~~S~~~t-  111 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFH--HAGE--VWDLASSPFDQRILATVYNDTSDSGVLTGAA-IWQIPEPLGQSNSST-  111 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhc--CCcc--eehhhcCCCCCceEEEEEeccCCCcceeeEE-EEecccccCccccch-
Confidence            358899999988898888777665  3343  666665   44554444443322    1233 5655432111 0000 


Q ss_pred             hhhhhhhccccccccCCe-eeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEE
Q 010037          214 VDAKRKVKRGWLKKLGAM-ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF  292 (519)
Q Consensus       214 ~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f  292 (519)
                                | .....+ +.+..++.|+.|.|++..+|+-. +..|.+|++.........+.. ..-..|....++-+|
T Consensus       112 ----------l-E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s-s~s~e~~~~ftsg~W  178 (370)
T KOG1007|consen  112 ----------L-ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS-SESAEMRHSFTSGAW  178 (370)
T ss_pred             ----------h-hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc-cccccccceeccccc
Confidence                      0 011111 12234667899999999998875 889999999876653222211 122346777888999


Q ss_pred             cc--CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeC
Q 010037          293 SL--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP  370 (519)
Q Consensus       293 sp--dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  370 (519)
                      +|  +|+.+++. .|+++..||+++.++...                                                 
T Consensus       179 spHHdgnqv~tt-~d~tl~~~D~RT~~~~~s-------------------------------------------------  208 (370)
T KOG1007|consen  179 SPHHDGNQVATT-SDSTLQFWDLRTMKKNNS-------------------------------------------------  208 (370)
T ss_pred             CCCCccceEEEe-CCCcEEEEEccchhhhcc-------------------------------------------------
Confidence            99  78888776 578999999987664222                                                 


Q ss_pred             CccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 010037          371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFIS  446 (519)
Q Consensus       371 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~s  446 (519)
                                  .-.+|...|.++.|+|+.  +|++|+.||.|+|||.+. ..+++.+. |...|++|.|+|...+++++
T Consensus       209 ------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  209 ------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             ------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence                        125688889999999987  999999999999999986 45666665 99999999999988999999


Q ss_pred             EeCCCeEEEEEcCC------------------------------CcEEeeccCCCceEEEEEee-CCCEEEEEecCCeEE
Q 010037          447 GSIDGKVRIWEVRR------------------------------CQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCR  495 (519)
Q Consensus       447 gs~Dg~V~iwd~~~------------------------------~~~~~~~~~~~~V~~v~~sp-dg~~l~sgs~dg~v~  495 (519)
                      |+.|..|.+|....                              +++..+..|.+.|++++|+. |.-.+|+-++||.+.
T Consensus       277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence            99999999997532                              11224567889999999987 555677889999998


Q ss_pred             EEECCC
Q 010037          496 FYDIKG  501 (519)
Q Consensus       496 iwdl~~  501 (519)
                      |=.+..
T Consensus       357 Is~V~r  362 (370)
T KOG1007|consen  357 ISSVPR  362 (370)
T ss_pred             eecCCh
Confidence            877653

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=5.8e-19  Score=188.15  Aligned_cols=247  Identities=18%  Similarity=0.300  Sum_probs=186.1

Q ss_pred             cccceeecCCCCe----EEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEE
Q 010037          237 RHGSATLKPGDHE----LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVW  311 (519)
Q Consensus       237 ~~~~~~~sp~g~~----lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iW  311 (519)
                      +-+.++|.+.+..    ||.|..||.|.+|+..+... -........+..|+++|..+.|++.. +.||+|+.||.|.||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhcc-CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            3445778777766    88899999999999886311 11222334567899999999999955 599999999999999


Q ss_pred             ecccCeeeceee--ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          312 KVIEHERLDGFD--VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       312 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      |+...+......  .....+.++.|...-               ......++..+.+.+|+.+.-    +++-.+..|..
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkv---------------qhILAS~s~sg~~~iWDlr~~----~pii~ls~~~~  205 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKV---------------SHILASGSPSGRAVIWDLRKK----KPIIKLSDTPG  205 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhh---------------hHHhhccCCCCCceeccccCC----CcccccccCCC
Confidence            997755433331  122234444443222               222345666778888888753    44555554443


Q ss_pred             --CeeEEEEcCCC--eEEEEeCCC---cEEEEECCC-CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          390 --EVLDLSWSKNG--FLLSSSADK---TVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       390 --~V~~l~~sp~~--~L~sgs~Dg---~V~lWdl~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                        .+..++|+|++  .|++++.|.   .|.+||++. ..+++++. |...|.++.|++.|..++++++.|+.|.+|+.++
T Consensus       206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence              57889999998  788887664   599999985 45777774 9999999999998889999999999999999999


Q ss_pred             CcEE-eeccCCCceEEEEEeeCCC-EEEEEecCCeEEEEECCCCe
Q 010037          461 CQVV-DYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       461 ~~~~-~~~~~~~~V~~v~~spdg~-~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ++++ .+....+++..+.|+|... .+++++.||.|.||.+.+..
T Consensus       286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999 4666788999999999765 78889999999999998765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.6e-17  Score=158.87  Aligned_cols=241  Identities=19%  Similarity=0.295  Sum_probs=171.4

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEec
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKV  313 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~I~iWd~  313 (519)
                      ..++.++.|||....|++++.||+++||.+......     ..+.+.--..+|.+.+|.|+|. .+++++.-...+.||+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----hheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence            456678999999999999999999999999854433     2334555578999999999998 8999999999999999


Q ss_pred             ccCeeeceeeccCCC-CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          314 IEHERLDGFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      .+.+..+.-...... ...-.|...+...++++..              ..+-+.+.....    ...+..++ -.+.|.
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--------------~~G~I~lLhakT----~eli~s~K-ieG~v~  348 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--------------NNGHIHLLHAKT----KELITSFK-IEGVVS  348 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEEcc--------------cCceEEeehhhh----hhhhheee-eccEEe
Confidence            887654322211111 1122333333333332222              222222222222    12233333 357799


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcE--EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-------
Q 010037          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-------  462 (519)
Q Consensus       393 ~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-------  462 (519)
                      .++|+.++ .|++++.+|.|.+||++...+++.+...+.|  ++++.++ ++.|||+|+..|.|.|||.++..       
T Consensus       349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP  427 (514)
T KOG2055|consen  349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKP  427 (514)
T ss_pred             eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCc
Confidence            99999999 8888899999999999999999999755554  6677778 89999999999999999965421       


Q ss_pred             -----------------------------------EEe---------ec---cCCCceEEEEEeeCCCEEEEEecCCeEE
Q 010037          463 -----------------------------------VVD---------YT---DIREIVSAVCYCPDGKGGIVGTMTGNCR  495 (519)
Q Consensus       463 -----------------------------------~~~---------~~---~~~~~V~~v~~spdg~~l~sgs~dg~v~  495 (519)
                                                         +++         |.   ..-+.|++++|+|.|-+||+|..+|.|.
T Consensus       428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~  507 (514)
T KOG2055|consen  428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH  507 (514)
T ss_pred             hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence                                               110         00   1123489999999999999999999999


Q ss_pred             EEECC
Q 010037          496 FYDIK  500 (519)
Q Consensus       496 iwdl~  500 (519)
                      +|.+.
T Consensus       508 l~kL~  512 (514)
T KOG2055|consen  508 LFKLH  512 (514)
T ss_pred             eEeec
Confidence            99874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=5.8e-18  Score=161.38  Aligned_cols=196  Identities=26%  Similarity=0.381  Sum_probs=153.0

Q ss_pred             CCeEEe---eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeeecee
Q 010037          247 DHELTL---GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGF  322 (519)
Q Consensus       247 g~~las---gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~  322 (519)
                      .+++|.   ++.-|-..|..+.+..+.-...   -.+.||+++|..++|+| +.+.||||++|.+|.||++..+.....+
T Consensus        44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~---P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l  120 (472)
T KOG0303|consen   44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASY---PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL  120 (472)
T ss_pred             CceEEEEEecCCCcceeecccccccccCCCC---CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc
Confidence            345544   3444556666555433222111   23579999999999999 6679999999999999999766532221


Q ss_pred             eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--
Q 010037          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--  400 (519)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--  400 (519)
                                                                             .+|+..+.+|...|--++|+|..  
T Consensus       121 -------------------------------------------------------tepvv~L~gH~rrVg~V~wHPtA~N  145 (472)
T KOG0303|consen  121 -------------------------------------------------------TEPVVELYGHQRRVGLVQWHPTAPN  145 (472)
T ss_pred             -------------------------------------------------------ccceEEEeecceeEEEEeecccchh
Confidence                                                                   25678899999999999999976  


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee-ccCCC-ceEEEEE
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIRE-IVSAVCY  478 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~~~-~V~~v~~  478 (519)
                      .|++++.|.+|.+||+.+++.+.++.|.+.|+++.|+. +|.+|++.+.|.+|||||.++++++.. ..|.+ .-..+.|
T Consensus       146 VLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif  224 (472)
T KOG0303|consen  146 VLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF  224 (472)
T ss_pred             hHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence            99999999999999999999999999999999999999 999999999999999999999999853 34543 3456778


Q ss_pred             eeCCCEEEEEec---CCeEEEEECCC
Q 010037          479 CPDGKGGIVGTM---TGNCRFYDIKG  501 (519)
Q Consensus       479 spdg~~l~sgs~---dg~v~iwdl~~  501 (519)
                      -.+|..+.+|-.   +..+-+||..+
T Consensus       225 l~~g~i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  225 LASGKIFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             eccCceeeeccccccccceeccCccc
Confidence            888885555543   55688888754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.78  E-value=2.5e-16  Score=155.30  Aligned_cols=238  Identities=13%  Similarity=0.162  Sum_probs=158.8

Q ss_pred             ccceeecCCCCeE-EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeccc
Q 010037          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE  315 (519)
Q Consensus       238 ~~~~~~sp~g~~l-asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg-s~Dg~I~iWd~~~  315 (519)
                      +..++|+|++..+ +++..++.|++|+.......       ..+..+.. +..+.|+|+++.|+++ +.|+.|++||+.+
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-------~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-------GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-------EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            3458999999976 56778999999998754321       12333333 5678999999977654 5689999999998


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      .+.+..+.... .+..+.+.++..  .+......             ...+..++.....    ...... ....+.+++
T Consensus       105 ~~~~~~~~~~~-~~~~~~~~~dg~--~l~~~~~~-------------~~~~~~~d~~~~~----~~~~~~-~~~~~~~~~  163 (300)
T TIGR03866       105 RKVLAEIPVGV-EPEGMAVSPDGK--IVVNTSET-------------TNMAHFIDTKTYE----IVDNVL-VDQRPRFAE  163 (300)
T ss_pred             CeEEeEeeCCC-CcceEEECCCCC--EEEEEecC-------------CCeEEEEeCCCCe----EEEEEE-cCCCccEEE
Confidence            87666554322 234444444332  11111111             1112223322211    111111 223457899


Q ss_pred             EcCCC-eEE-EEeCCCcEEEEECCCCeEEEEecCC--------CcEEEEEEeeCCCCEEEE-EeCCCeEEEEEcCCCcEE
Q 010037          396 WSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFSHN--------NYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       396 ~sp~~-~L~-sgs~Dg~V~lWdl~~~~~~~~~~h~--------~~V~~v~fsp~d~~~l~s-gs~Dg~V~iwd~~~~~~~  464 (519)
                      |+|++ +|+ ++..++.|++||+.+++.+..+...        .....++|+| +++++++ ...++.|.+||+++++++
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            99999 664 5556999999999999887766411        1235688999 8887544 455678999999998887


Q ss_pred             eeccCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECCCCeee
Q 010037          465 DYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~~~~l~  505 (519)
                      ....+...+.+++|+|+|++|+++ ..+|.|++||+.+++++
T Consensus       243 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       243 DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            655556689999999999999886 46899999999998863

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.5e-17  Score=154.62  Aligned_cols=220  Identities=15%  Similarity=0.226  Sum_probs=158.3

Q ss_pred             cCCeeeEeecccceeecCCCC--eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037          228 LGAMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~--~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D  305 (519)
                      ++.+..|.+.++++.|.+.-.  .|++|+.||.|.+|+..       .+.....+++|.+.|+.++.+|.|++-++.+.|
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D  148 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD  148 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-------CeEEeeeecccccccceeEecCCCceEEEEcCC
Confidence            456667778888889988876  99999999999999987       345567899999999999999999999999999


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      +.+++|++.+|+....+++..... .+.|.+.+...++..                 ...+-+|......     +...-
T Consensus       149 ~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~v~~-----------------~~~i~i~q~d~A~-----v~~~i  205 (362)
T KOG0294|consen  149 QVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFVVSG-----------------RNKIDIYQLDNAS-----VFREI  205 (362)
T ss_pred             ceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEEEEe-----------------ccEEEEEecccHh-----Hhhhh
Confidence            999999999998766665544332 244443221111110                 0011111111110     11111


Q ss_pred             ccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEE--eeCCCCEEEEEeCCCeEEEEEcCCC-
Q 010037          386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF--NPVDDNYFISGSIDGKVRIWEVRRC-  461 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~f--sp~d~~~l~sgs~Dg~V~iwd~~~~-  461 (519)
                      .....+.|+.|...+.|++|..|+.|++||.....++..+. |...|-.+.+  +| .+.||++++.||.|+|||++.. 
T Consensus       206 ~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  206 ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP-EHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecC-CceEEEEeccCceEEEEEccccc
Confidence            12255888888887899999999999999999988888875 9999999985  34 6789999999999999999876 


Q ss_pred             ----cEEeeccCCCceEEEEE
Q 010037          462 ----QVVDYTDIREIVSAVCY  478 (519)
Q Consensus       462 ----~~~~~~~~~~~V~~v~~  478 (519)
                          ..+.....+..++|+..
T Consensus       285 k~~~~~l~e~n~~~RltCl~~  305 (362)
T KOG0294|consen  285 KKRPTLLAELNTNVRLTCLRV  305 (362)
T ss_pred             cCCcceeEEeecCCccceeee
Confidence                33333334555555543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.78  E-value=1.6e-17  Score=171.57  Aligned_cols=266  Identities=17%  Similarity=0.260  Sum_probs=192.3

Q ss_pred             eecccceeecCCCCe-EEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          235 IDRHGSATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~-lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      ..+|.+++|..||.. +|+|+..|.+.+||+++.+...      +...+|.+.|..+.|.|....|+|++.|..+++|=.
T Consensus       244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~------v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf  317 (910)
T KOG1539|consen  244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN------VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF  317 (910)
T ss_pred             ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee------eeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence            467788999999975 5668888999999999765432      234579999999999999999999999999999976


Q ss_pred             ccCe----eeceeeccCCCCceEEEeecCCCCeEEeeccC----------------------------------------
Q 010037          314 IEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK----------------------------------------  349 (519)
Q Consensus       314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------  349 (519)
                      .++.    .++.-..|..++.|+.+.......+.....+.                                        
T Consensus       318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~  397 (910)
T KOG1539|consen  318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP  397 (910)
T ss_pred             eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence            6443    23333455556666655432221111111000                                        


Q ss_pred             --------Ccee--eeeeeccCCCeeEEEeCCc-------------------------------------------cccc
Q 010037          350 --------EKID--KTKSLRKSSDLTCVVLPPK-------------------------------------------VFRL  376 (519)
Q Consensus       350 --------~~~~--~~~~~~~s~~~~~~~~~~~-------------------------------------------~~~~  376 (519)
                              ....  ............+..|+.+                                           .+.+
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm  477 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM  477 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence                    0000  0000000001111111110                                           0111


Q ss_pred             c-ccceeEe---eccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 010037          377 L-EKPLHEF---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG  451 (519)
Q Consensus       377 ~-~~~~~~~---~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (519)
                      . +-....+   ..|.++|+.++...-+ .+++++.+|.+++||.++...+..+.-...++++..+. ....++.+..|-
T Consensus       478 QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr-~s~l~a~~~ddf  556 (910)
T KOG1539|consen  478 QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR-VSDLLAIALDDF  556 (910)
T ss_pred             ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee-hhhhhhhhcCce
Confidence            1 1112233   4789999999998877 99999999999999999999999998888999999998 788999999999


Q ss_pred             eEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          452 KVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       452 ~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      .|+++|+.+.+++ .+.+|.+.|++++|+|||++|++++.|++|++||+.++++++.
T Consensus       557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~  613 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG  613 (910)
T ss_pred             eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence            9999999999988 5888999999999999999999999999999999999998763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.9e-17  Score=172.67  Aligned_cols=202  Identities=17%  Similarity=0.321  Sum_probs=162.1

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      ++...-+...++|+-+|+++|.|+.|-.|++-+......+       ..+.+|+++|.+|.|+|++.+||+.+-||+|+|
T Consensus        92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-------eeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence            3444456667899999999999999999999998865543       357899999999999999999999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      |+++++.+...+..-.....                                                      ......
T Consensus       165 w~~~~~~~~~tl~~v~k~n~------------------------------------------------------~~~s~i  190 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVDKDNE------------------------------------------------------FILSRI  190 (933)
T ss_pred             EEcccchhhhhcccCCcccc------------------------------------------------------ccccce
Confidence            99998887655532111000                                                      001445


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~  466 (519)
                      +..++|+|++ .|+..+.|+.|++|+..+...+..+.   +...+.+++|+| +|.|||+++.||.|.|||+.+..   .
T Consensus       191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~---~  266 (933)
T KOG1274|consen  191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHE---R  266 (933)
T ss_pred             eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecccch---h
Confidence            6778999997 99999999999999999999888875   555699999999 89999999999999999999822   2


Q ss_pred             ccCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (519)
Q Consensus       467 ~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw  497 (519)
                      ......|.+++|.|+++.+-.-...|...+|
T Consensus       267 ~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  267 HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            4456789999999999877665555554444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.1e-16  Score=162.02  Aligned_cols=243  Identities=16%  Similarity=0.222  Sum_probs=187.4

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      ...+.++|++.+.+.||++-.+|.|-||++..      ..+....+.++. ..|-+++|++ +..|++.+.+|.|.-||+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDL   97 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCC------CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEec
Confidence            35667899999999999999999999999875      334444566654 6899999995 456889999999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .+++.+..++.....+..++..+....  ..+.              +.++.+..+....-.+.  ....+...++.|.+
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~--l~Ig--------------cddGvl~~~s~~p~~I~--~~r~l~rq~sRvLs  159 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTI--LAIG--------------CDDGVLYDFSIGPDKIT--YKRSLMRQKSRVLS  159 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccce--EEee--------------cCCceEEEEecCCceEE--EEeecccccceEEE
Confidence            999998888877777777766655422  2222              22222222222111111  12233445789999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~  463 (519)
                      ++|+|++ .|++|+.||.|++||+.++..+....         ....|++|.|-.  ...+++|..-|+|.+||...+.+
T Consensus       160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcch
Confidence            9999999 79999999999999999998777321         334678888875  56899999999999999999998


Q ss_pred             Ee-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          464 VD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       464 ~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ++ ...|...|.+++..+++.++++++.|+.|.-|...+++-
T Consensus       238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            84 778899999999999999999999999999998877643

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.77  E-value=9.8e-18  Score=173.04  Aligned_cols=194  Identities=18%  Similarity=0.319  Sum_probs=166.2

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      .+++.++-|++.+.|+..|.|-+++++.+-..-+-.    .-.+|.++|+.++...-++.+++++.+|.+++||..+...
T Consensus       452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             EEEEEeccCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence            358899999999999999999999998654332200    1257999999999998889999999999999999977664


Q ss_pred             eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (519)
                      +..+..                                                               ...+.++.++.
T Consensus       528 ~~~l~l---------------------------------------------------------------~~~~~~iv~hr  544 (910)
T KOG1539|consen  528 KKSLRL---------------------------------------------------------------GSSITGIVYHR  544 (910)
T ss_pred             eeeecc---------------------------------------------------------------CCCcceeeeee
Confidence            433321                                                               23456666666


Q ss_pred             CC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEE
Q 010037          399 NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV  476 (519)
Q Consensus       399 ~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v  476 (519)
                      .. .++++..|-.|+++|+.+.+.++.|. |.+.|++++|+| +|++|++++.|++||+||+.++.++.......+.+++
T Consensus       545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sl  623 (910)
T KOG1539|consen  545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSL  623 (910)
T ss_pred             hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEecCCcceee
Confidence            65 88999999999999999999999997 999999999999 9999999999999999999999999988889999999


Q ss_pred             EEeeCCCEEEEEecC-CeEEEEECC
Q 010037          477 CYCPDGKGGIVGTMT-GNCRFYDIK  500 (519)
Q Consensus       477 ~~spdg~~l~sgs~d-g~v~iwdl~  500 (519)
                      .|+|+|.+||+...| .-|++|.-.
T Consensus       624 s~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  624 SFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             EECCCCCEEEEEEecCceEEEEEch
Confidence            999999999999998 459999754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.77  E-value=3.6e-17  Score=151.21  Aligned_cols=222  Identities=12%  Similarity=0.142  Sum_probs=162.7

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC--EEEEEeCCCcEEEE
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVRVW  311 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~LaSgs~Dg~I~iW  311 (519)
                      |..++-+++|+.+|..+++|+.|+.+++||+.....        +.+..|.++|.++.|-+...  .|+||+.|++|+.|
T Consensus        71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~--------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW  142 (347)
T KOG0647|consen   71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV--------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW  142 (347)
T ss_pred             cCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe--------eeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence            456666789999999999999999999999985432        35678999999999988665  89999999999999


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec----c
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG----H  387 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----h  387 (519)
                      |.+....+..+++++..   .+  .+-...++.+              +..+..+.+++....      ..+++.    -
T Consensus       143 D~R~~~pv~t~~LPeRv---Ya--~Dv~~pm~vV--------------ata~r~i~vynL~n~------~te~k~~~SpL  197 (347)
T KOG0647|consen  143 DTRSSNPVATLQLPERV---YA--ADVLYPMAVV--------------ATAERHIAVYNLENP------PTEFKRIESPL  197 (347)
T ss_pred             ccCCCCeeeeeecccee---ee--hhccCceeEE--------------EecCCcEEEEEcCCC------cchhhhhcCcc
Confidence            99988888777765431   11  1111111111              122222333332111      111121    2


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Eec-CC---------CcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFS-HN---------NYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~--~~~-h~---------~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                      +-.+.|++..++. ..+.|+-.|.+-|..+..+.+..  +|+ |.         ..|++|+|+| ....|++.+.||++.
T Consensus       198 k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~  276 (347)
T KOG0647|consen  198 KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFS  276 (347)
T ss_pred             cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEE
Confidence            3468899988888 77999999999999998863333  333 43         3588999999 677899999999999


Q ss_pred             EEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEe
Q 010037          455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       455 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs  489 (519)
                      +||-.....+ ....+..+|++.+|+.+|.++|-+.
T Consensus       277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             EecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            9999887666 4688999999999999999887653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.1e-16  Score=148.51  Aligned_cols=223  Identities=17%  Similarity=0.227  Sum_probs=163.7

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      ++-+.+|.+ ...+++|+-||.|+.+|+..+...        .+..|..+|.||.+++-...+++||.|++|++||.+..
T Consensus        56 plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~--------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~  126 (323)
T KOG1036|consen   56 PLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED--------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK  126 (323)
T ss_pred             ceeeeeccC-CceEEEeccCceEEEEEecCCcce--------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence            333457777 568899999999999999865532        35679999999999998888999999999999999864


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      .....+...              ..+++++....     ..+.+..+..+.+|+.+......  ...-..-+-.+.|++.
T Consensus       127 ~~~~~~d~~--------------kkVy~~~v~g~-----~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~  185 (323)
T KOG1036|consen  127 VVVGTFDQG--------------KKVYCMDVSGN-----RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVAL  185 (323)
T ss_pred             ccccccccC--------------ceEEEEeccCC-----EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEE
Confidence            333332221              22333333222     22445666777788877654432  1111234567899999


Q ss_pred             cCCC-eEEEEeCCCcEEEEECCCC----eEEEEec-C---------CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          397 SKNG-FLLSSSADKTVRLWQVGID----RCLRVFS-H---------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       397 sp~~-~L~sgs~Dg~V~lWdl~~~----~~~~~~~-h---------~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      -|++ -++.++-||.|.+=.+...    .....|+ |         -.+|++|+|+| -...|+||+.||.|.+||+.+.
T Consensus       186 ~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  186 VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcch
Confidence            9987 8888899999998776655    2222332 2         24799999999 6889999999999999999988


Q ss_pred             cEE-eeccCCCceEEEEEeeCCCEEEEEec
Q 010037          462 QVV-DYTDIREIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       462 ~~~-~~~~~~~~V~~v~~spdg~~l~sgs~  490 (519)
                      +.+ ++......|.+++|+.||..||+|+.
T Consensus       265 Krl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  265 KRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             hhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            766 56666788999999999999999885

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.75  E-value=2.1e-17  Score=161.74  Aligned_cols=235  Identities=17%  Similarity=0.259  Sum_probs=197.5

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      +.++.+.|||+.|++|+.-.++.|||+......+.     .++..-.-..++++.+||.+..+++..||.|.|||+....
T Consensus       468 iRSckL~pdgrtLivGGeastlsiWDLAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~  542 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT  542 (705)
T ss_pred             eeeeEecCCCceEEeccccceeeeeeccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence            34577999999999999999999999985543332     1233333457889999999999999999999999999999


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      .+..++.+.....|+.+..++                ....+++.+.++..|+.+..+...+     ......|.++.++
T Consensus       543 ~VrqfqGhtDGascIdis~dG----------------tklWTGGlDntvRcWDlregrqlqq-----hdF~SQIfSLg~c  601 (705)
T KOG0639|consen  543 LVRQFQGHTDGASCIDISKDG----------------TKLWTGGLDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYC  601 (705)
T ss_pred             eeecccCCCCCceeEEecCCC----------------ceeecCCCccceeehhhhhhhhhhh-----hhhhhhheecccC
Confidence            999999999999998876554                3456788888999998876432111     1235789999999


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEE
Q 010037          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV  476 (519)
Q Consensus       398 p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v  476 (519)
                      |++ +|+.|-.++.|-|......+..+.-.|.+.|.++.|.+ .|++|++.+.|..+..|...-+..+........|.++
T Consensus       602 P~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsC  680 (705)
T KOG0639|consen  602 PTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC  680 (705)
T ss_pred             CCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeeccccCcceee
Confidence            999 99999999999999888777666667999999999999 9999999999999999999999888777778899999


Q ss_pred             EEeeCCCEEEEEecCCeEEEEEC
Q 010037          477 CYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       477 ~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      ..+.|.++|++|+.|....||.+
T Consensus       681 DIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  681 DISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeccCceEEEecCCCcceEEEEE
Confidence            99999999999999999888875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.2e-17  Score=148.38  Aligned_cols=224  Identities=16%  Similarity=0.148  Sum_probs=166.0

Q ss_pred             ccccCCeeeEeecccceeecC--CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC--CCEEE
Q 010037          225 LKKLGAMARIIDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLA  300 (519)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~sp--~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~La  300 (519)
                      .+.+..+.+|..++-.++|..  .|.+||+++.||.|.||....+..     ....+...|...|++++|.|.  |-.||
T Consensus        46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-----~k~~e~~~h~~SVNsV~wapheygl~La  120 (299)
T KOG1332|consen   46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-----TKAYEHAAHSASVNSVAWAPHEYGLLLA  120 (299)
T ss_pred             ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-----hhhhhhhhhcccceeecccccccceEEE
Confidence            345667888999998888866  899999999999999999886532     233456789999999999994  56899


Q ss_pred             EEeCCCcEEEEecccC---eeeceeeccCCCCceEEEeecCCCCeEEeeccCCce-eeeeeeccCCCeeEEEeCCccccc
Q 010037          301 SGGEDGTVRVWKVIEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI-DKTKSLRKSSDLTCVVLPPKVFRL  376 (519)
Q Consensus       301 Sgs~Dg~I~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~  376 (519)
                      .++.||.|.|.++...   ........|...+..+.+.+........   +.... .....+.++.+..+.+|....-. 
T Consensus       121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~---~~~~~~~~krlvSgGcDn~VkiW~~~~~~-  196 (299)
T KOG1332|consen  121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV---DQGPAAKVKRLVSGGCDNLVKIWKFDSDS-  196 (299)
T ss_pred             EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc---ccCcccccceeeccCCccceeeeecCCcc-
Confidence            9999999999998765   1223345566667777776664321111   11111 13455678888888888765431 


Q ss_pred             cccceeEeeccCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECCCC--eEEEEec--CCCcEEEEEEeeCCCCEEEEE
Q 010037          377 LEKPLHEFQGHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGID--RCLRVFS--HNNYVTSVAFNPVDDNYFISG  447 (519)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~~-----~L~sgs~Dg~V~lWdl~~~--~~~~~~~--h~~~V~~v~fsp~d~~~l~sg  447 (519)
                       -+.-+.|.+|.+.|.+++|.|.-     .|++++.||+|.||..+..  ....++-  ....+..+.|++ .+++|+.+
T Consensus       197 -w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs  274 (299)
T KOG1332|consen  197 -WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVS  274 (299)
T ss_pred             -hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec-cccEEEEe
Confidence             13344589999999999999953     8999999999999987632  2222222  567899999999 99999999


Q ss_pred             eCCCeEEEEEcC
Q 010037          448 SIDGKVRIWEVR  459 (519)
Q Consensus       448 s~Dg~V~iwd~~  459 (519)
                      +.|.+|.+|--.
T Consensus       275 ~GdNkvtlwke~  286 (299)
T KOG1332|consen  275 GGDNKVTLWKEN  286 (299)
T ss_pred             cCCcEEEEEEeC
Confidence            999999999654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.75  E-value=2.1e-17  Score=167.52  Aligned_cols=211  Identities=21%  Similarity=0.334  Sum_probs=166.7

Q ss_pred             ccccCCeeeEeecccceeecCCCCeEEeeecCC-----eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE
Q 010037          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL  299 (519)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg-----~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L  299 (519)
                      +.....+.+|--.+.+++.+|+++++|++++..     .|++|+..       .....+.+.+|.-.|+.|+|||||+||
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-------~W~~~~~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-------NWLQVQELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-------chhhhheecccceEEEEEEECCCCcEE
Confidence            344455778888888999999999999987764     48999876       333445789999999999999999999


Q ss_pred             EEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       300 aSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                      ++++.|+++.+|........ .+                                                         
T Consensus       588 LsvsRDRt~sl~~~~~~~~~-e~---------------------------------------------------------  609 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKD-EF---------------------------------------------------------  609 (764)
T ss_pred             EEeecCceEEeeeeecccch-hh---------------------------------------------------------
Confidence            99999999999997443210 00                                                         


Q ss_pred             ceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEE---ecCCCcEEEEEEeeCCCC----EEEEEeC
Q 010037          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRV---FSHNNYVTSVAFNPVDDN----YFISGSI  449 (519)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~--~~~~~---~~h~~~V~~v~fsp~d~~----~l~sgs~  449 (519)
                      .....+.|+.-|.+..|+|++ +++|+|.|++|++|.....  +.+..   +++...|+.++|.|.+.+    .++.|-.
T Consensus       610 ~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle  689 (764)
T KOG1063|consen  610 RFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLE  689 (764)
T ss_pred             hhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEec
Confidence            012256799999999999999 8999999999999998877  44443   358999999999986554    8899999


Q ss_pred             CCeEEEEEcCCC-c------------EEeeccCCCceEEEEEeeC----------CCEEEEEecCCeEEEEECC
Q 010037          450 DGKVRIWEVRRC-Q------------VVDYTDIREIVSAVCYCPD----------GKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       450 Dg~V~iwd~~~~-~------------~~~~~~~~~~V~~v~~spd----------g~~l~sgs~dg~v~iwdl~  500 (519)
                      .|.|.+|....- +            .-....+...|+.++|.|.          ...|++|+.|..++|+++.
T Consensus       690 ~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  690 KGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            999999996511 1            1124567778999999974          2347999999999999874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.74  E-value=1.5e-16  Score=161.31  Aligned_cols=255  Identities=20%  Similarity=0.278  Sum_probs=179.5

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc----
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE----  315 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~----  315 (519)
                      ..-|+|+++.+++-+..|-.++|..++.  .  .......+.||.+.|..+.|.|.|.||+|.|.|.+-|++---.    
T Consensus       321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--~--~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~  396 (764)
T KOG1063|consen  321 GGLWSPNSNVIIAHGRTGGFHLWKTKDK--T--FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE  396 (764)
T ss_pred             eEEEcCCCCEEEEecccCcEEEEeccCc--c--ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc
Confidence            3569999999999999999999983221  1  1222234689999999999999999999999999999986541    


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeee--------------------------------------
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS--------------------------------------  357 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------  357 (519)
                      ...+..-+.|....+|+.+...... .+..  ...++.+...                                      
T Consensus       397 wHEiaRPQiHGyDl~c~~~vn~~~~-FVSg--AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa  473 (764)
T KOG1063|consen  397 WHEIARPQIHGYDLTCLSFVNEDLQ-FVSG--ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA  473 (764)
T ss_pred             eeeecccccccccceeeehccCCce-eeec--ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence            1233334555566666666553111 1000  0000000000                                      


Q ss_pred             ec--cCCCeeE----EEeC----------Ccc-----ccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCC-----Cc
Q 010037          358 LR--KSSDLTC----VVLP----------PKV-----FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD-----KT  410 (519)
Q Consensus       358 ~~--~s~~~~~----~~~~----------~~~-----~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D-----g~  410 (519)
                      ..  ....+..    .-.+          +..     ....-..++++.||...|.+++.+|++ ++++++..     ..
T Consensus       474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv  553 (764)
T KOG1063|consen  474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV  553 (764)
T ss_pred             CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence            00  0000000    0000          000     000113357789999999999999999 88888754     45


Q ss_pred             EEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-----eeccCCCceEEEEEeeCCCE
Q 010037          411 VRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKG  484 (519)
Q Consensus       411 V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V~~v~~spdg~~  484 (519)
                      |+||+..+-..++.+. |+-.|+.++|+| |++||++.+.|.++.+|........     ....|...|.++.|+|++.+
T Consensus       554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~  632 (764)
T KOG1063|consen  554 IRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY  632 (764)
T ss_pred             EEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence            9999999887777664 999999999999 9999999999999999998554322     36789999999999999999


Q ss_pred             EEEEecCCeEEEEECCCC
Q 010037          485 GIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       485 l~sgs~dg~v~iwdl~~~  502 (519)
                      ++|++.|.+|++|.....
T Consensus       633 FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  633 FATASRDKKVKVWEEPDL  650 (764)
T ss_pred             eEEecCCceEEEEeccCc
Confidence            999999999999999877

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=2.2e-16  Score=150.71  Aligned_cols=210  Identities=19%  Similarity=0.262  Sum_probs=164.6

Q ss_pred             CeeeEeecccceeecCC-CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCc
Q 010037          230 AMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGT  307 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~  307 (519)
                      .+.+|...+-.++|.|. +..||+|+.|-+|.||++...............|.+|...|-.|.|+|. .+.|+|++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            34567777777899995 4567889999999999999777655555566789999999999999995 468999999999


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |.||++.+++.+                                                              .++. |
T Consensus       156 v~iWnv~tgeal--------------------------------------------------------------i~l~-h  172 (472)
T KOG0303|consen  156 VSIWNVGTGEAL--------------------------------------------------------------ITLD-H  172 (472)
T ss_pred             EEEEeccCCcee--------------------------------------------------------------eecC-C
Confidence            999999988742                                                              1233 8


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCC-cEEEEEEeeCCCCEEEEEe---CCCeEEEEEcCCC
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN-YVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRC  461 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~-~V~~v~fsp~d~~~l~sgs---~Dg~V~iwd~~~~  461 (519)
                      ...|+++.|+.+| +|+|++.|+.|||||.++++.+..-. |.+ .-..+.|-. ++.++-+|.   .+.++-+||..+-
T Consensus       173 pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  173 PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccc
Confidence            9999999999999 99999999999999999999988773 544 344555666 777666654   3778999997653


Q ss_pred             c---EEeeccCCCceEEEEEeeCCCEEEE-EecCCeEEEEECCCCe
Q 010037          462 Q---VVDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       462 ~---~~~~~~~~~~V~~v~~spdg~~l~s-gs~dg~v~iwdl~~~~  503 (519)
                      .   .....+..+.|.---|.||.+++.. |-.|+.||.|.+..-.
T Consensus       252 ~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  252 EEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            2   2344555666776778888887765 4569999999987644

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.73  E-value=5.8e-17  Score=149.23  Aligned_cols=174  Identities=24%  Similarity=0.421  Sum_probs=140.4

Q ss_pred             ecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeec
Q 010037          281 LAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (519)
Q Consensus       281 ~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (519)
                      ..|.+.|+++...+ .|+|+++|+.||.|.+||++.......-.     ..+-                      .    
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~-----li~k----------------------~----   88 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG-----LIAK----------------------H----   88 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc-----ceeh----------------------e----
Confidence            45889999999988 78999999999999999997544211000     0000                      0    


Q ss_pred             cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEe
Q 010037          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN  437 (519)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fs  437 (519)
                           .+.+           ....-.+|.-.|.++.|-|-.  .+.+++.|++++|||.++-+....|...+.|++-+++
T Consensus        89 -----~c~v-----------~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS  152 (397)
T KOG4283|consen   89 -----KCIV-----------AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS  152 (397)
T ss_pred             -----eeec-----------cccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcC
Confidence                 0000           012235789999999999954  9999999999999999999999999999999999999


Q ss_pred             eCC--CCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCE-EEEEecCCeEEEEECCC
Q 010037          438 PVD--DNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       438 p~d--~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~-l~sgs~dg~v~iwdl~~  501 (519)
                      |..  ..++|+|..|-+|++-|+..+... .+.+|.+.|.++.|+|...+ |++|+.||.|++||++.
T Consensus       153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr  220 (397)
T KOG4283|consen  153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR  220 (397)
T ss_pred             hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence            953  357788888999999999999877 58999999999999998765 77899999999999974

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=2.2e-16  Score=164.29  Aligned_cols=250  Identities=19%  Similarity=0.188  Sum_probs=174.0

Q ss_pred             ecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC--CEEEEEeCCCcEEEEe
Q 010037          236 DRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWK  312 (519)
Q Consensus       236 ~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~LaSgs~Dg~I~iWd  312 (519)
                      ..+.++.|+|.. .++|.|..+|+|.+||+.......... .......|..+|+.+.|..+.  .-+++++.||.|..|+
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            456678899965 566778999999999999766532211 112345699999999997754  4499999999999998


Q ss_pred             cccCeeeceeec------------cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc----
Q 010037          313 VIEHERLDGFDV------------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL----  376 (519)
Q Consensus       313 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~----  376 (519)
                      ++.-........            .....+++.|.+.....               .+.++..+.+.....+....    
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~---------------FiVGTe~G~v~~~~r~g~~~~~~~  386 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH---------------FIVGTEEGKVYKGCRKGYTPAPEV  386 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCce---------------EEEEcCCcEEEEEeccCCcccccc
Confidence            754433111110            11123333444333332               22333333333322222221    


Q ss_pred             cccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECC-CCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCe
Q 010037          377 LEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK  452 (519)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~-~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (519)
                      ..++...+..|.++|.++.++|-+  .+++++ |.+|+||... ...++..+. +..+|++++|+|.....|+++..||.
T Consensus       387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence            124455677899999999999988  445555 9999999988 566666665 77889999999988899999999999


Q ss_pred             EEEEEcCCCcEE---eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          453 VRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       453 V~iwd~~~~~~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      |.|||+......   .........+.+.|++.|+.|++|...|.+++|++...
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            999999764322   33334666788899999999999999999999999643

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=3.3e-16  Score=156.49  Aligned_cols=219  Identities=19%  Similarity=0.391  Sum_probs=174.6

Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeee
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (519)
                      ..+.+|++.|.+|...|.|.+||+|+.||+|+||.+.++.|+..+.... .+.|+.|++.....++++....... ....
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~-ivnp  471 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVL-IVNP  471 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceE-EeCc
Confidence            4578999999999999999999999999999999999999999887754 6889999999888887776655411 1111


Q ss_pred             ec-------------------cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeC---CCcEEEE
Q 010037          358 LR-------------------KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA---DKTVRLW  414 (519)
Q Consensus       358 ~~-------------------~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~---Dg~V~lW  414 (519)
                      ..                   ...+..++.|.....+....-++..-.|...|..|.|+..| +|++..-   ...|.|+
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence            00                   12234555666554444444566777799999999999999 9888764   4679999


Q ss_pred             ECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCC
Q 010037          415 QVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTG  492 (519)
Q Consensus       415 dl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg  492 (519)
                      ++.....+.-|. ..+.|.++.|+| ...+|++++. ..|+|||+..+.++ .+......|..++.+|.|.-|++|+.|+
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~  629 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK  629 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence            998887777774 678899999999 6667777664 57999999987777 4566667899999999999999999999


Q ss_pred             eEEEEECC
Q 010037          493 NCRFYDIK  500 (519)
Q Consensus       493 ~v~iwdl~  500 (519)
                      .+..||+.
T Consensus       630 k~~WfDld  637 (733)
T KOG0650|consen  630 KMCWFDLD  637 (733)
T ss_pred             eeEEEEcc
Confidence            99999986

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.72  E-value=1.8e-16  Score=160.92  Aligned_cols=241  Identities=21%  Similarity=0.247  Sum_probs=180.1

Q ss_pred             eEEeeecCCeEEEeeCCccccc-------c----c-ccccc---c---------------eeecCCCCEEEEEEccCCCE
Q 010037          249 ELTLGQRMRRVRVHPVKKQSRE-------L----S-SLYTG---Q---------------EFLAHEGSILTMKFSLDGQY  298 (519)
Q Consensus       249 ~lasgs~dg~I~vw~~~~~~~~-------~----~-~~~~~---~---------------~l~~H~~~I~~l~fspdg~~  298 (519)
                      .+++++.|++|++|++......       +    . ..+..   +               ...+..-.|.+++.+|+|++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            3789999999999998751110       0    0 00000   0               11223457999999999999


Q ss_pred             EEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037          299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (519)
Q Consensus       299 LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (519)
                      ||+|..-|.++||++++.+....+..|+..+.|+.++....             .......++.+..+.+++....   .
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~-------------~~kLLASasrdRlIHV~Dv~rn---y  537 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL-------------TNKLLASASRDRLIHVYDVKRN---Y  537 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh-------------hhHhhhhccCCceEEEEecccc---c
Confidence            99999999999999999988888888888777776654322             2223345556666667665431   2


Q ss_pred             cceeEeeccCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeC
Q 010037          379 KPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~  449 (519)
                      .++.++.+|...|+++.|.-+|   .+++++.|+.|.+=-.+...-...|.      ....++.++..| ...++++++.
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQ  616 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQ  616 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEec
Confidence            4577899999999999998877   89999999987654333221222222      345789999999 8999999999


Q ss_pred             CCeEEEEEcCCCcEEe-e---ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          450 DGKVRIWEVRRCQVVD-Y---TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       450 Dg~V~iwd~~~~~~~~-~---~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      |..|+|||+.+++..+ +   .+|.+....+...|.|.||++.+.|.++.+||..+++++.
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA  677 (1080)
T ss_pred             ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence            9999999999998874 2   3466778889999999999999999999999998887653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.5e-16  Score=147.87  Aligned_cols=152  Identities=24%  Similarity=0.400  Sum_probs=133.2

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeE
Q 010037          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (519)
Q Consensus       287 I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  366 (519)
                      -.|+.|++.|.+||.|+.||.|.|||+.+...                                                
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------   57 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------   57 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence            67999999999999999999999999976542                                                


Q ss_pred             EEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeC------
Q 010037          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV------  439 (519)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~------  439 (519)
                                    -..+.+|..+|++++|+++| .|+|+|.|..|++||+..+.+++.+...++|+.++|+|.      
T Consensus        58 --------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v  123 (405)
T KOG1273|consen   58 --------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV  123 (405)
T ss_pred             --------------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence                          23467899999999999999 999999999999999999999998887777777777663      


Q ss_pred             ----------------------------------------CCCEEEEEeCCCeEEEEEcCCCcEEeecc--CCCceEEEE
Q 010037          440 ----------------------------------------DDNYFISGSIDGKVRIWEVRRCQVVDYTD--IREIVSAVC  477 (519)
Q Consensus       440 ----------------------------------------d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~~~~V~~v~  477 (519)
                                                              .|+|+++|...|.+.++|..+.+++....  ....|..+-
T Consensus       124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~  203 (405)
T KOG1273|consen  124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQII  203 (405)
T ss_pred             EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEE
Confidence                                                    57899999999999999999998885322  236788999


Q ss_pred             EeeCCCEEEEEecCCeEEEEECC
Q 010037          478 YCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       478 ~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      ++..|+.|++-+.|..||.|+++
T Consensus       204 ~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  204 VSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             EeccCcEEEEecCCceEEEEehh
Confidence            99999999999999999999987

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.72  E-value=4.8e-15  Score=145.57  Aligned_cols=246  Identities=11%  Similarity=0.143  Sum_probs=173.9

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      .|-|++|.++|+ +++|..+|.|.||+.....       ..+...+|.+.|.+++.-.+|.+ +||+.|+.|..|| ..-
T Consensus       248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y  317 (626)
T KOG2106|consen  248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWD-DNY  317 (626)
T ss_pred             EEEEEEEcCCCC-EEeecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCccE-eecCccceEEecc-ccc
Confidence            455789999986 5699999999999985322       22334499999999999999975 5599999999999 444


Q ss_pred             eeeceeeccCCCCceEEEeecCCCC--------eEEeeccCCce-----------------eeeeeeccCCCeeEEEeCC
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQ--------LIPIDVDKEKI-----------------DKTKSLRKSSDLTCVVLPP  371 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----------------~~~~~~~~s~~~~~~~~~~  371 (519)
                      +.+...+.++.....-....+....        ++...+...-.                 .....++.+.+..+.+|+.
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~  397 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND  397 (626)
T ss_pred             cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC
Confidence            4444444444333222222222221        11111111000                 1112245556666777763


Q ss_pred             ccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 010037          372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG  451 (519)
Q Consensus       372 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (519)
                      +.      +.-. +.-..++.|+.|+|.|.++.|+..|...+.|.++...+..-..+.+++++.|+| +|.+||.|+.|+
T Consensus       398 ~k------~~wt-~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~  469 (626)
T KOG2106|consen  398 HK------LEWT-KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDN  469 (626)
T ss_pred             Cc------eeEE-EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCC
Confidence            22      1111 223567899999999999999999999999999977777666789999999999 999999999999


Q ss_pred             eEEEEEcCCC-cEE-e-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          452 KVRIWEVRRC-QVV-D-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       452 ~V~iwd~~~~-~~~-~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .|+||-+... ... . -..+..+|+.+.|++|+++|.+-+.|-.|..|...
T Consensus       470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            9999998754 322 2 22334899999999999999999999999999443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.72  E-value=3e-16  Score=158.18  Aligned_cols=254  Identities=14%  Similarity=0.193  Sum_probs=154.9

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      .+..++|.|||..|+.+. +.++.|||...+.       ..+++++|++.|+|++|+.||+.+|+|+.|..|.+|.-.-.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcc-------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence            566799999999988874 4579999988654       34578999999999999999999999999999999986433


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEe-------eccCCce------eeeeeeccCCCeeEEEeCCcccc-----ccc
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPI-------DVDKEKI------DKTKSLRKSSDLTCVVLPPKVFR-----LLE  378 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~-----~~~  378 (519)
                      ..++  ..|...+.|+.|.+-......+.       +.....+      .+.....-..++.+.........     ..+
T Consensus        86 G~Lk--YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g  163 (1081)
T KOG1538|consen   86 GILK--YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG  163 (1081)
T ss_pred             ceee--eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence            3221  23455677777776543322211       1100000      01111111122222222111111     112


Q ss_pred             cceeEeec---cCCCeeEEEEcCCC------eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC
Q 010037          379 KPLHEFQG---HSSEVLDLSWSKNG------FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       379 ~~~~~~~~---h~~~V~~l~~sp~~------~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~  449 (519)
                      ++...+..   .+.+|++++|+|..      .++......++.+|.+.....-+.-...-...|+++.| +|.|++.|+.
T Consensus       164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~-NGEy~LiGGs  242 (1081)
T KOG1538|consen  164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFT-NGEYILLGGS  242 (1081)
T ss_pred             CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheecc-CCcEEEEccC
Confidence            22233333   23345555555552      34444444444444443222111212233344555555 7888888888


Q ss_pred             CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       450 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      |+.+.+|-...-.+-.......+|+.++..|+++.++.|+.||+|.-|++..
T Consensus       243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            9988888655444445666788999999999999999999999999999853

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.71  E-value=2e-15  Score=148.84  Aligned_cols=187  Identities=14%  Similarity=0.216  Sum_probs=140.8

Q ss_pred             CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCeeeceeecc
Q 010037          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       247 g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      +..+++++.|+.|++|+......       .+.+..|. .+.++.|+|+++.| ++++.++.|++||+.+++....+   
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~-------~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---   69 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEV-------TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL---   69 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCce-------EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec---
Confidence            35678899999999999875432       22344444 46789999999976 56778899999998776532211   


Q ss_pred             CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-
Q 010037          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-  403 (519)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~-  403 (519)
                                                                                 ..+. .+..++|+|++ .++ 
T Consensus        70 -----------------------------------------------------------~~~~-~~~~~~~~~~g~~l~~   89 (300)
T TIGR03866        70 -----------------------------------------------------------PSGP-DPELFALHPNGKILYI   89 (300)
T ss_pred             -----------------------------------------------------------cCCC-CccEEEECCCCCEEEE
Confidence                                                                       1111 23567899998 554 


Q ss_pred             EEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC-eEEEEEcCCCcEEeeccCCCceEEEEEeeCC
Q 010037          404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQVVDYTDIREIVSAVCYCPDG  482 (519)
Q Consensus       404 sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg-~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg  482 (519)
                      +++.++.|++||+.+.+.+..+.+...+.+++|+| ++.++++++.++ .+.+||..+++..........+..++|+|+|
T Consensus        90 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg  168 (300)
T TIGR03866        90 ANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG  168 (300)
T ss_pred             EcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC
Confidence            45678999999999998888887666688999999 999999888765 5778899988776543344556789999999


Q ss_pred             CEEEEE-ecCCeEEEEECCCCeee
Q 010037          483 KGGIVG-TMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       483 ~~l~sg-s~dg~v~iwdl~~~~l~  505 (519)
                      ++|+++ ..+|.|++||+.++++.
T Consensus       169 ~~l~~~~~~~~~v~i~d~~~~~~~  192 (300)
T TIGR03866       169 KELWVSSEIGGTVSVIDVATRKVI  192 (300)
T ss_pred             CEEEEEcCCCCEEEEEEcCcceee
Confidence            988655 46899999999988653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.71  E-value=9.1e-17  Score=150.13  Aligned_cols=188  Identities=27%  Similarity=0.466  Sum_probs=143.8

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCeeeceeec
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDV  324 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~~~~~~~  324 (519)
                      ...++|+|+.-|.|+|.|+.+..       ....+.+|...|+.|+|.|+. ++|++|+.|..||+|++++..++..+. 
T Consensus       104 ~~p~la~~G~~GvIrVid~~~~~-------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-  175 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVSGQ-------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-  175 (385)
T ss_pred             CCeeEEeecceeEEEEEecchhh-------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec-
Confidence            35689999999999999987544       334588999999999999965 799999999999999999988654332 


Q ss_pred             cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE
Q 010037          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL  403 (519)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~  403 (519)
                                                                                -+.||.+.|.++.|+++| +|+
T Consensus       176 ----------------------------------------------------------G~egHrdeVLSvD~~~~gd~i~  197 (385)
T KOG1034|consen  176 ----------------------------------------------------------GVEGHRDEVLSVDFSLDGDRIA  197 (385)
T ss_pred             ----------------------------------------------------------ccccccCcEEEEEEcCCCCeee
Confidence                                                                      246788899999999988 999


Q ss_pred             EEeCCCcEEEEECCCCeE-------------------------EEEec----CCCcEEE---------------------
Q 010037          404 SSSADKTVRLWQVGIDRC-------------------------LRVFS----HNNYVTS---------------------  433 (519)
Q Consensus       404 sgs~Dg~V~lWdl~~~~~-------------------------~~~~~----h~~~V~~---------------------  433 (519)
                      ++++|.+|++|++...+.                         ...|.    |..+|.|                     
T Consensus       198 ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~  277 (385)
T KOG1034|consen  198 SCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWK  277 (385)
T ss_pred             ccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEe
Confidence            999999999998872210                         00110    3333322                     


Q ss_pred             -----------------------------------EEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-----eeccCCCce
Q 010037          434 -----------------------------------VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIV  473 (519)
Q Consensus       434 -----------------------------------v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V  473 (519)
                                                         .+|+| -..+||.|.+.|+|.+||++.....     ........|
T Consensus       278 pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tV  356 (385)
T KOG1034|consen  278 PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTV  356 (385)
T ss_pred             cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEecccccee
Confidence                                               22334 4567888999999999999886653     223345679


Q ss_pred             EEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          474 SAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       474 ~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      ...+|+.||..|+..+.|+.|.-||..
T Consensus       357 RQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  357 RQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eeeeecccCcEEEEEeCCCcEEEEEee
Confidence            999999999999999999999999853

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.71  E-value=4.1e-17  Score=156.29  Aligned_cols=207  Identities=25%  Similarity=0.415  Sum_probs=155.3

Q ss_pred             ecccceeecCCCC-eEEeeecCCeEEEeeCCccccccc--cccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS--SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       236 ~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~--~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      ..+.++.|.++.. .+|+|+.|..|+||.+......-.  .+.....+..|...|+++.|+|+|..||||+.+|.|.+|.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            4556678888877 999999999999998875443321  2333346788999999999999999999999999999998


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      ...-...      .... .             .                          ............+.+|...|.
T Consensus        94 ~~~~~~~------~~d~-e-------------~--------------------------~~~ke~w~v~k~lr~h~~diy  127 (434)
T KOG1009|consen   94 QGDVRIF------DADT-E-------------A--------------------------DLNKEKWVVKKVLRGHRDDIY  127 (434)
T ss_pred             ecCcCCc------cccc-h-------------h--------------------------hhCccceEEEEEecccccchh
Confidence            6531100      0000 0             0                          000000112455778999999


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc--
Q 010037          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--  468 (519)
Q Consensus       393 ~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--  468 (519)
                      .++|+|++ ++++++.|..+++||+..++.+..+. |..+|..++|.| -.+|+++-+.|...+++.+...+++....  
T Consensus       128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~  206 (434)
T KOG1009|consen  128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLD  206 (434)
T ss_pred             hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence            99999999 99999999999999999999999886 999999999999 89999999999988888876654332111  


Q ss_pred             ------------------CC----CceEEEEEeeCCCEEEEEe
Q 010037          469 ------------------IR----EIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       469 ------------------~~----~~V~~v~~spdg~~l~sgs  489 (519)
                                        |.    .-...++|+|||.+|++..
T Consensus       207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence                              11    1145689999999988854

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4.2e-16  Score=146.46  Aligned_cols=189  Identities=20%  Similarity=0.335  Sum_probs=149.4

Q ss_pred             CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      ..+|++...|.|++|+...       ....+++++|...++.++|..  ....+.+|+.||+|++||++.......+.  
T Consensus        41 ~~vav~lSngsv~lyd~~t-------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~--  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT-------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS--  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccc-------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee--
Confidence            5788999999999999874       233457889999999999987  46789999999999999998766433322  


Q ss_pred             CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC-CCeeEEEEcCCC-eEE
Q 010037          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLL  403 (519)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~-~L~  403 (519)
                                                                                +.+|. .+..|++-.-++ .++
T Consensus       112 ----------------------------------------------------------~~~~~~~~f~~ld~nck~~ii~  133 (376)
T KOG1188|consen  112 ----------------------------------------------------------WTQQSGTPFICLDLNCKKNIIA  133 (376)
T ss_pred             ----------------------------------------------------------ccCCCCCcceEeeccCcCCeEE
Confidence                                                                      22222 344555554333 555


Q ss_pred             EEe----CCCcEEEEECCCCeE-EEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC----cEEeeccCCCc
Q 010037          404 SSS----ADKTVRLWQVGIDRC-LRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVVDYTDIREI  472 (519)
Q Consensus       404 sgs----~Dg~V~lWdl~~~~~-~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~----~~~~~~~~~~~  472 (519)
                      +|+    .+-.|.+||++..+. +..+.  |.+.||+|+|+|.+.++|++||.||.|.|||+...    .++....+...
T Consensus       134 ~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS  213 (376)
T KOG1188|consen  134 CGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS  213 (376)
T ss_pred             eccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence            554    467799999998876 66664  99999999999999999999999999999999864    24467788888


Q ss_pred             eEEEEEeeCC-CEEEEEecCCeEEEEECCCCe
Q 010037          473 VSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       473 V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      |..+.|..++ +.|.+-+..+...+|+++.+.
T Consensus       214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             eeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            9999999888 458888999999999998775

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=6.3e-16  Score=150.63  Aligned_cols=203  Identities=18%  Similarity=0.295  Sum_probs=162.4

Q ss_pred             CeEEee-ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccC
Q 010037          248 HELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD  326 (519)
Q Consensus       248 ~~lasg-s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~  326 (519)
                      .+++++ .....|.+|.+.+......       ..--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+.      
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q-------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~------  117 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQ-------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN------  117 (476)
T ss_pred             hheeeecccCccccccccCchhhhhh-------hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH------
Confidence            444444 3445799999886554331       11236789999999999999999999999999999987543      


Q ss_pred             CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEE
Q 010037          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS  405 (519)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sg  405 (519)
                                                                              .+.+|-..|+|+.|+.+| +|+||
T Consensus       118 --------------------------------------------------------v~~aHYQ~ITcL~fs~dgs~iiTg  141 (476)
T KOG0646|consen  118 --------------------------------------------------------VLSAHYQSITCLKFSDDGSHIITG  141 (476)
T ss_pred             --------------------------------------------------------HHHhhccceeEEEEeCCCcEEEec
Confidence                                                                    346788999999999999 99999


Q ss_pred             eCCCcEEEEECC---------CCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE
Q 010037          406 SADKTVRLWQVG---------IDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS  474 (519)
Q Consensus       406 s~Dg~V~lWdl~---------~~~~~~~~~-h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~  474 (519)
                      +.||.|.+|.+.         +-+++..|. |.-.|+.+...+. -...++++|.|.++++||+..+.++........+.
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~  221 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIK  221 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcce
Confidence            999999999863         345667775 9999999999872 24689999999999999999999998888889999


Q ss_pred             EEEEeeCCCEEEEEecCCeEEEEECCCCeeeec--------cccceeEEecCC
Q 010037          475 AVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL--------STTAYLFALLGH  519 (519)
Q Consensus       475 ~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~--------~~~~~~~~l~GH  519 (519)
                      +++..|-+..+.+|+.+|.|.+.++....-+..        .....+..+.||
T Consensus       222 av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh  274 (476)
T KOG0646|consen  222 AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH  274 (476)
T ss_pred             eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence            999999999999999999999988865432211        334456666666

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=7.3e-15  Score=132.18  Aligned_cols=233  Identities=21%  Similarity=0.366  Sum_probs=165.0

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCcccc---ccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSR---ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~---~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      +-+++|.+++|++|..+|+|.+..++....   +.......-..++|.++|+.|+|.  ..+|++|+ ||.|+-|...+.
T Consensus        15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~   91 (325)
T KOG0649|consen   15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEE   91 (325)
T ss_pred             HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhh
Confidence            358999999999999999999998864221   111111222458999999999998  45777776 599999988654


Q ss_pred             ee----eceeeccC---------CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          317 ER----LDGFDVQD---------TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       317 ~~----~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      ..    ...+....         ..+..+...+...                ..+....++.++.++....    +...+
T Consensus        92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en----------------Si~~AgGD~~~y~~dlE~G----~i~r~  151 (325)
T KOG0649|consen   92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN----------------SILFAGGDGVIYQVDLEDG----RIQRE  151 (325)
T ss_pred             hhhccchhhhhhcCccccCcccCCccceeEeccCCC----------------cEEEecCCeEEEEEEecCC----EEEEE
Confidence            32    11111110         1111222222221                1233446777777777654    34688


Q ss_pred             eeccCCCeeEEEE-cCCCeEEEEeCCCcEEEEECCCCeEEEEec---C--------CCcEEEEEEeeCCCCEEEEEeCCC
Q 010037          384 FQGHSSEVLDLSW-SKNGFLLSSSADKTVRLWQVGIDRCLRVFS---H--------NNYVTSVAFNPVDDNYFISGSIDG  451 (519)
Q Consensus       384 ~~~h~~~V~~l~~-sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~---h--------~~~V~~v~fsp~d~~~l~sgs~Dg  451 (519)
                      ++||+..|.++.- +.++.+++|+.||++||||++++++++.+.   |        ...|-+++.   +..++++|+ ..
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp  227 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GP  227 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CC
Confidence            9999999999987 445599999999999999999999998884   2        235666665   456777765 56


Q ss_pred             eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          452 KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       452 ~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .+.+|.++..+..........+..+.|..|  .+++++....|.-|.+.+
T Consensus       228 ~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  228 KLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             ceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence            899999999999988888889999999655  677777777788888754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.2e-15  Score=141.46  Aligned_cols=248  Identities=17%  Similarity=0.204  Sum_probs=157.4

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeecccceeecC--CCCeEEeeecCC
Q 010037          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKP--GDHELTLGQRMR  257 (519)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp--~g~~lasgs~dg  257 (519)
                      ||.++..+-+.++.     ||++-..                .+-|.......+|...+..+.|.+  -|+.+|+++.|+
T Consensus        25 GRRmAtCSsDq~vk-----I~d~~~~----------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr   83 (361)
T KOG2445|consen   25 GRRMATCSSDQTVK-----IWDSTSD----------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR   83 (361)
T ss_pred             CceeeeccCCCcEE-----EEeccCC----------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence            77788887777777     7765211                111222223344445555555543  688999999999


Q ss_pred             eEEEeeCCcccccc--ccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEecccCeee------ceee----
Q 010037          258 RVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERL------DGFD----  323 (519)
Q Consensus       258 ~I~vw~~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I~iWd~~~~~~~------~~~~----  323 (519)
                      ++.||.-.....+.  .......++......|+.++|.|  -|-.||+++.||.+|||+....-.+      ..++    
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            99999874322222  22334456778889999999999  5678999999999999987554322      2222    


Q ss_pred             ---ccCCCCceEEEeecCCC-CeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037          324 ---VQDTDPSCLYFTINHLS-QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (519)
Q Consensus       324 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (519)
                         .+.....|+.|++.... +.+++......         ..-..+.+|........-..+.++.+|..+|++|+|.|+
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a---------~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA---------PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCC---------ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence               12233445555544322 22222222110         000111222111100011235567799999999999996


Q ss_pred             C-----eEEEEeCCCcEEEEECCCC--------------------eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeE
Q 010037          400 G-----FLLSSSADKTVRLWQVGID--------------------RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKV  453 (519)
Q Consensus       400 ~-----~L~sgs~Dg~V~lWdl~~~--------------------~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (519)
                      -     .|++++.|| |+||+++..                    +.+..+. |+..|..+.|+- .|..|++.+.||.|
T Consensus       235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~V  312 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCV  312 (361)
T ss_pred             cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCcee
Confidence            3     889999999 999998731                    1122232 999999999998 89999999999999


Q ss_pred             EEEEcC
Q 010037          454 RIWEVR  459 (519)
Q Consensus       454 ~iwd~~  459 (519)
                      |+|...
T Consensus       313 RLWkan  318 (361)
T KOG2445|consen  313 RLWKAN  318 (361)
T ss_pred             eehhhh
Confidence            999754

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.69  E-value=4.9e-16  Score=156.38  Aligned_cols=263  Identities=17%  Similarity=0.207  Sum_probs=172.3

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCcEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVR  309 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~  309 (519)
                      ..+|...|-.+.|-|...+|++++.|.+|++||++.....-.     ..+.+|++.|.+++|.|. ...|++|+.||.|.
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il  170 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL  170 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc-----eeecccccccchhhhccCCCcceeeccCCCcEE
Confidence            345666777789999888999999999999999986553221     246899999999999995 46899999999999


Q ss_pred             EEecccCeee--c-----eeeccCCCCceEEE--eec-----CCCCe----EEeeccCCceeeeeeeccCCCeeEEEeCC
Q 010037          310 VWKVIEHERL--D-----GFDVQDTDPSCLYF--TIN-----HLSQL----IPIDVDKEKIDKTKSLRKSSDLTCVVLPP  371 (519)
Q Consensus       310 iWd~~~~~~~--~-----~~~~~~~~~~~~~~--~~~-----~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  371 (519)
                      |||++-....  .     ....+........-  ...     ....+    ..+.+..   .......+..++.+.+|+.
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD---e~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD---ESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec---cceeeeccCCCcceEEEee
Confidence            9998654410  0     00001110000000  000     00000    0000000   1111223345889999988


Q ss_pred             cccccc--ccc--eeEeecc---CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEecC---CCcEEEEEEee
Q 010037          372 KVFRLL--EKP--LHEFQGH---SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSH---NNYVTSVAFNP  438 (519)
Q Consensus       372 ~~~~~~--~~~--~~~~~~h---~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~--~~~~~~h---~~~V~~v~fsp  438 (519)
                      +.....  ..+  ...+.-|   .-.+.++.....| +|++.+.|+.|.+|++.+..  ++..+.+   ...-..-..+|
T Consensus       248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp  327 (720)
T KOG0321|consen  248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP  327 (720)
T ss_pred             cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCC
Confidence            654322  222  2233334   3467788888878 77777779999999998654  3333321   11112234578


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCC
Q 010037          439 VDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       439 ~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~  502 (519)
                       ++.++++|+.|...++|.+.+.+.-  .+.+|...|++++|.|.. .-+++++.|-.++||++..+
T Consensus       328 -d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  328 -DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             -CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence             9999999999999999999987644  578899999999998843 34777899999999999654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.68  E-value=1.4e-15  Score=138.38  Aligned_cols=250  Identities=12%  Similarity=0.158  Sum_probs=161.2

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceee-cCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      .+..|...+.++.|..++. |.+|...|.|++|.+.......       .+. .|...|+.+.--|+ ..|.+-+.|+.+
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~-------~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L   79 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP-------LIRLFGRLFITNLQSIPN-DSLDTQGRDPLL   79 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch-------hhhhhccceeeceeecCC-cchhhcCCCceE
Confidence            3446667777888888776 8899999999999988544322       244 57889999999987 468899999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeE--EeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI--PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      .+|++..+..+..-.+.-+......++........  ................+.....+.+-+.           .-.+
T Consensus        80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-----------~~~~  148 (323)
T KOG0322|consen   80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-----------SERS  148 (323)
T ss_pred             EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-----------hhcc
Confidence            99999775543322221111111111111100000  0000000000000000111111111111           1123


Q ss_pred             cCCCeeEEEEcCC-C---eEEEEeCCCcEEEEECCCCeEEEEe-----------cCCCcEEEEEEeeC------------
Q 010037          387 HSSEVLDLSWSKN-G---FLLSSSADKTVRLWQVGIDRCLRVF-----------SHNNYVTSVAFNPV------------  439 (519)
Q Consensus       387 h~~~V~~l~~sp~-~---~L~sgs~Dg~V~lWdl~~~~~~~~~-----------~h~~~V~~v~fsp~------------  439 (519)
                      ..+.+.|..|.-. +   +|+.|-.+|.|.+||+.++..+-.+           .|..+|.++.+.+.            
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            4567777776443 2   7788889999999999987433222           15555555544332            


Q ss_pred             ---------------------------------CCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEE
Q 010037          440 ---------------------------------DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGG  485 (519)
Q Consensus       440 ---------------------------------d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l  485 (519)
                                                       |++.+|+++.|+.||||..++.+.+ .+..|...|++++|+||...+
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence                                             8899999999999999999999888 578899999999999999999


Q ss_pred             EEEecCCeEEEEEC
Q 010037          486 IVGTMTGNCRFYDI  499 (519)
Q Consensus       486 ~sgs~dg~v~iwdl  499 (519)
                      |.++.|+.|-+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.68  E-value=1.5e-15  Score=153.00  Aligned_cols=241  Identities=15%  Similarity=0.236  Sum_probs=166.4

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeece--ee
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG--FD  323 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~--~~  323 (519)
                      ....||.+..+|.|.++|.......+.. .......+|...|..+.|-|-...|++++.|.++++||+.+.++...  +.
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~  141 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL  141 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence            3456788999999999998865533111 11234678999999999999667899999999999999999988766  66


Q ss_pred             ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc-----------------------cccc
Q 010037          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-----------------------LEKP  380 (519)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-----------------------~~~~  380 (519)
                      .|...+..++|.+.....+               ..++.++.+.+|+.+....                       ..+.
T Consensus       142 GH~~SvkS~cf~~~n~~vF---------------~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr  206 (720)
T KOG0321|consen  142 GHTGSVKSECFMPTNPAVF---------------CTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR  206 (720)
T ss_pred             ccccccchhhhccCCCcce---------------eeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence            6666666666665554332               3455555555555432210                       1122


Q ss_pred             eeEeeccCCCeeE---EEEcCCC-eEEEEeC-CCcEEEEECCCCeEEEEec---------C---CCcEEEEEEeeCCCCE
Q 010037          381 LHEFQGHSSEVLD---LSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFS---------H---NNYVTSVAFNPVDDNY  443 (519)
Q Consensus       381 ~~~~~~h~~~V~~---l~~sp~~-~L~sgs~-Dg~V~lWdl~~~~~~~~~~---------h---~~~V~~v~fsp~d~~~  443 (519)
                      ++...+|...|.+   +.+..|. .|++++. |+.|+|||++.........         |   ...++++.... .|.+
T Consensus       207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~  285 (720)
T KOG0321|consen  207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTY  285 (720)
T ss_pred             ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCe
Confidence            3344556655555   4444555 9998887 9999999999765443221         3   34578888877 6788


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEe---eccCC--CceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          444 FISGSIDGKVRIWEVRRCQVVD---YTDIR--EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~~~---~~~~~--~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      |.+.+.|+.|++||+..-.+-.   +.++.  ..-..-..+||+.+|++|+.|+..++|.+.+.+
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e  350 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE  350 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence            8877789999999998754331   22221  112234678999999999999999999997643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.67  E-value=9e-16  Score=151.51  Aligned_cols=209  Identities=21%  Similarity=0.307  Sum_probs=156.1

Q ss_pred             CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCC
Q 010037          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT  327 (519)
Q Consensus       248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~  327 (519)
                      ..++.++.||.+.|-+-..+-        .+.+.+|.+.|.+-.|+|||.-|+|+|+||.|+||.- +|-...++.....
T Consensus        76 d~~~i~s~DGkf~il~k~~rV--------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARV--------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEecccchh--------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCc
Confidence            467788899999988754221        1236789999999999999999999999999999985 4444455556667


Q ss_pred             CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe
Q 010037          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS  406 (519)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs  406 (519)
                      .+.|+.|.++..+.+++..-                 .+.+-+...    ...+-.+++|.+-|.++.|++.. .+++|+
T Consensus       147 ~v~c~~W~p~S~~vl~c~g~-----------------h~~IKpL~~----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG  205 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQGG-----------------HISIKPLAA----NSKIIRWRAHDGLVLSLSWSTQSNIIASGG  205 (737)
T ss_pred             eeEEEEECCCCCceEEecCC-----------------eEEEeeccc----ccceeEEeccCcEEEEeecCccccceeecC
Confidence            78889998887766554211                 111111110    12244578999999999999988 999999


Q ss_pred             CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEE
Q 010037          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI  486 (519)
Q Consensus       407 ~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~  486 (519)
                      .|-..+|||-........-.|..+|++|+|+| + ..++.+|.+ ++|+          .....+.|..++|+|||..++
T Consensus       206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~n-t~R~----------~~p~~GSifnlsWS~DGTQ~a  272 (737)
T KOG1524|consen  206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSYN-TARF----------SSPRVGSIFNLSWSADGTQAT  272 (737)
T ss_pred             CceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeeee-eeee----------cCCCccceEEEEEcCCCceee
Confidence            99999999976555544556999999999999 6 677777653 4552          233456789999999999999


Q ss_pred             EEecCCeEEEEEC
Q 010037          487 VGTMTGNCRFYDI  499 (519)
Q Consensus       487 sgs~dg~v~iwdl  499 (519)
                      +|+..|.+.+=.+
T Consensus       273 ~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  273 CGTSTGQLIVAYA  285 (737)
T ss_pred             ccccCceEEEeee
Confidence            9999998765444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=3.5e-15  Score=149.17  Aligned_cols=274  Identities=14%  Similarity=0.176  Sum_probs=176.9

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC--EEEEEeCCCcE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~LaSgs~Dg~I  308 (519)
                      +.+|.+.+.++...|.|.+||+|+.||+|+||.+..+.+...       + ...+.|.||+|+|.+.  .||.+-.. .+
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~-------~-~~d~~I~~vaw~P~~~~~vLAvA~~~-~~  466 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRT-------V-QFDSEIRSVAWNPLSDLCVLAVAVGE-CV  466 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEE-------E-eecceeEEEEecCCCCceeEEEEecC-ce
Confidence            678889999999999999999999999999999986654321       1 1345899999999764  45555444 46


Q ss_pred             EEEecccCeeec---------eee-ccCCCCceEEEeecCC--------------CCeEEeeccCCceeeeeeeccCCCe
Q 010037          309 RVWKVIEHERLD---------GFD-VQDTDPSCLYFTINHL--------------SQLIPIDVDKEKIDKTKSLRKSSDL  364 (519)
Q Consensus       309 ~iWd~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~~  364 (519)
                      .|-+..-|..+.         ... ........+.|.....              ..+..+.+....-+.......+...
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence            666654332111         110 0111112223333211              1111111111111111112222222


Q ss_pred             eEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCC
Q 010037          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN  442 (519)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~  442 (519)
                      .+++......    +....|....+.|.++.|+|.. +|+.++. ..|+|||+.....++.+. ....|..++.+| .|.
T Consensus       547 ~VliHQLSK~----~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GD  620 (733)
T KOG0650|consen  547 SVLIHQLSKR----KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGD  620 (733)
T ss_pred             eEEEEecccc----cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCC
Confidence            3333322211    1112334456779999999998 7777665 579999998877766654 667899999999 899


Q ss_pred             EEEEEeCCCeEEEEEcCCCc-EE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC-CCeeeeccccceeEEecCC
Q 010037          443 YFISGSIDGKVRIWEVRRCQ-VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-GMQIFDLSTTAYLFALLGH  519 (519)
Q Consensus       443 ~l~sgs~Dg~V~iwd~~~~~-~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~-~~~l~~~~~~~~~~~l~GH  519 (519)
                      -|+.|+.|+++..+|+.-.. +. .+..|...+++++|++.-.++++|+.||.+.||.-. -..+.+.+-.-++..|.||
T Consensus       621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH  700 (733)
T KOG0650|consen  621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH  700 (733)
T ss_pred             eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence            99999999999999997653 33 577889999999999999999999999999888532 2334444444456666666

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.66  E-value=2.3e-15  Score=146.41  Aligned_cols=208  Identities=18%  Similarity=0.253  Sum_probs=156.3

Q ss_pred             ccceeecCCCCEEEEEEccCC--CEEEEEeCCCcEEEEecccC----eeeceeeccCCCCceEEEeecCCCCeEEeeccC
Q 010037          276 TGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWKVIEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK  349 (519)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg--~~LaSgs~Dg~I~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (519)
                      ..+.++-|.+.|.+++|+|..  +.+|+|..-|+|-+||+.+.    ..+..+..+..++.++.|.+.....++....++
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            344567799999999999954  58888999999999999532    234455667778899999998888777655443


Q ss_pred             CceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-EEEec-
Q 010037          350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS-  426 (519)
Q Consensus       350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~-~~~~~-  426 (519)
                                     .+...+.....  ...+..+......+.++.|+.+. .++.+..=|...+||++++.. ...+. 
T Consensus       258 ---------------tiR~~D~~~~i--~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l  320 (498)
T KOG4328|consen  258 ---------------TIRLQDFEGNI--SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL  320 (498)
T ss_pred             ---------------eeeeeeecchh--hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence                           23222221110  01122222334556777887776 777777777999999998754 33333 


Q ss_pred             CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC---c--EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---Q--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~---~--~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      |...|++|+++|+...+||+++.|++++|||++.-   .  .+....|...|.++.|+|+|-.|++.+.|..|+|||..
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            88899999999999999999999999999999862   2  35778899999999999988889999999999999984

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.66  E-value=8.5e-15  Score=140.57  Aligned_cols=276  Identities=16%  Similarity=0.205  Sum_probs=173.7

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCcccc-------c--cccccccceeecCCCCEEEEEEccCCCE
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-------E--LSSLYTGQEFLAHEGSILTMKFSLDGQY  298 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~-------~--~~~~~~~~~l~~H~~~I~~l~fspdg~~  298 (519)
                      ...+..|...++++.|+|+|..||+|+.+|.|.+|.......       .  .......+.+.+|...|..++|+|++.+
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence            445777888889999999999999999999999998762111       0  0112334567889999999999999999


Q ss_pred             EEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccC-CceeeeeeeccCCCeeEEEeCCcccccc
Q 010037          299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-EKIDKTKSLRKSSDLTCVVLPPKVFRLL  377 (519)
Q Consensus       299 LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~  377 (519)
                      +++++.|..+++||+..|.....+..+...+..++|.+........ ..+. ..........-...............-.
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~-s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~  216 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASK-SSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER  216 (434)
T ss_pred             eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhh-ccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence            9999999999999999999999999888888888876654322111 1111 0000000000000000000111111111


Q ss_pred             ccc-eeEeec--cCCCeeEEEEcCCC-eEEEEeC----CCc-----EEEEECC-CCeEEEEec-CCCcEEEEEEeeC---
Q 010037          378 EKP-LHEFQG--HSSEVLDLSWSKNG-FLLSSSA----DKT-----VRLWQVG-IDRCLRVFS-HNNYVTSVAFNPV---  439 (519)
Q Consensus       378 ~~~-~~~~~~--h~~~V~~l~~sp~~-~L~sgs~----Dg~-----V~lWdl~-~~~~~~~~~-h~~~V~~v~fsp~---  439 (519)
                      +.. .+.+..  -......++|+|+| +|++...    .+.     .++++-. ..++...+. ...++..+.|+|.   
T Consensus       217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e  296 (434)
T KOG1009|consen  217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE  296 (434)
T ss_pred             CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence            111 111111  12234568899999 7776531    222     2333321 112222222 4445666666653   


Q ss_pred             --------------CCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          440 --------------DDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       440 --------------d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                                    ..-.+|.++. ..|.|||..+..++.  -.-|-..|+.++|++||..|++.+.||.+-+-.+...+
T Consensus       297 lrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  297 LRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             eccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence                          2234556665 479999999977663  44577889999999999999999999999888887665


Q ss_pred             ee
Q 010037          504 IF  505 (519)
Q Consensus       504 l~  505 (519)
                      +-
T Consensus       376 lg  377 (434)
T KOG1009|consen  376 LG  377 (434)
T ss_pred             cc
Confidence            54

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.5e-14  Score=140.89  Aligned_cols=200  Identities=17%  Similarity=0.263  Sum_probs=155.6

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEeccc--CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC
Q 010037          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (519)
Q Consensus       284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  361 (519)
                      .+.|++|.|+|....|++|+.||+++||.+..  +..++.+.....++.+..|.+++...++..               +
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s---------------~  277 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS---------------G  277 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec---------------c
Confidence            46899999999999999999999999999854  446677777777888888877665433322               2


Q ss_pred             CCeeEEEeCCccccccccceeEeeccC-CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeC
Q 010037          362 SDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV  439 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~  439 (519)
                      .....+.|+.....+  .++..+.++. ..+.....+|++ +|+..+..|.|.|....+++.+..++..+.|..++|+. 
T Consensus       278 rrky~ysyDle~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-  354 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-  354 (514)
T ss_pred             cceEEEEeecccccc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-
Confidence            222233343322221  2233344443 456777889998 99999999999999999999999999999999999998 


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCc--eEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI--VSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       440 d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~--V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      ++..|++.+.+|.|.+||++...++....-.+.  -+++|.+++|.+||+|+..|.|.|||..+
T Consensus       355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            899999999999999999999988853333333  46788889999999999999999999754

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.65  E-value=2.6e-14  Score=133.51  Aligned_cols=243  Identities=14%  Similarity=0.151  Sum_probs=168.6

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCcccccc-----ccccccceeec-CCCCEEEEEEc-------cCCCEEEEEeCCCc
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSREL-----SSLYTGQEFLA-HEGSILTMKFS-------LDGQYLASGGEDGT  307 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~-----~~~~~~~~l~~-H~~~I~~l~fs-------pdg~~LaSgs~Dg~  307 (519)
                      ..|+|||..|++-+.|..+.+|++...-...     .......+++- ....|...+|-       |+..++|+.+.|.-
T Consensus        55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP  134 (406)
T ss_pred             ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence            5899999999999999999999986321110     01111112221 23457777774       56789999999999


Q ss_pred             EEEEecccCeeeceeeccCC-----CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCc-cc---cccc
Q 010037          308 VRVWKVIEHERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VF---RLLE  378 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~---~~~~  378 (519)
                      |++||.-+|+....+.....     ...++.|++++...++                 +....+.+++.. ..   ....
T Consensus       135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-----------------GykrcirvFdt~RpGr~c~vy~  197 (406)
T KOG2919|consen  135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-----------------GYKRCIRVFDTSRPGRDCPVYT  197 (406)
T ss_pred             eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-----------------cccceEEEeeccCCCCCCcchh
Confidence            99999999998766654332     2345566665533222                 112223333321 00   0000


Q ss_pred             cceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC-CCeEE
Q 010037          379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DGKVR  454 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~  454 (519)
                      ...+.-.+..+-|.|++|+|-.  .++.++.-..+-||.-..+.++..+. |.+.|+.++|.+ +|+.|.+|+. |.+|.
T Consensus       198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl  276 (406)
T KOG2919|consen  198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKIL  276 (406)
T ss_pred             hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEE
Confidence            1111123457789999999976  89999999999999998998888885 999999999999 8999999885 78999


Q ss_pred             EEEcCCCcEE--eeccCCC-c--eEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          455 IWEVRRCQVV--DYTDIRE-I--VSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       455 iwd~~~~~~~--~~~~~~~-~--V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .||++...-.  .+..|.+ .  -.-....|+|++|++|+.||.|++||+++
T Consensus       277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            9999985433  3333333 2  22345678999999999999999999987

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.64  E-value=1.4e-15  Score=152.65  Aligned_cols=202  Identities=16%  Similarity=0.319  Sum_probs=154.6

Q ss_pred             eecCCCCeEEe--eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCee
Q 010037          242 TLKPGDHELTL--GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       242 ~~sp~g~~las--gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      .|.-+...+|+  .+.-|.|-|+++.+..+........  + -....|+.+.|.| |...||.+++||.|++|.+..+..
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~--l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl  662 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPG--L-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL  662 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccc--c-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence            36667777766  5667999999998655432221111  1 1345799999999 888999999999999999976653


Q ss_pred             eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (519)
                      ....                                                       ..|-..+.+|...|+.+.|+|
T Consensus       663 ~e~~-------------------------------------------------------~tPe~~lt~h~eKI~slRfHP  687 (1012)
T KOG1445|consen  663 PENE-------------------------------------------------------MTPEKILTIHGEKITSLRFHP  687 (1012)
T ss_pred             Cccc-------------------------------------------------------CCcceeeecccceEEEEEecc
Confidence            2111                                                       234566889999999999999


Q ss_pred             CC--eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee--c-cCCCc
Q 010037          399 NG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--T-DIREI  472 (519)
Q Consensus       399 ~~--~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~--~-~~~~~  472 (519)
                      -.  .|++++.|-+|+|||+.+.+....+ .|.+.|..++|+| +|+.+++.+.||+|++|+.+++..-..  . .....
T Consensus       688 LAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR  766 (1012)
T KOG1445|consen  688 LAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR  766 (1012)
T ss_pred             hhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence            65  9999999999999999998776666 4999999999999 999999999999999999988653321  1 11233


Q ss_pred             eEEEEEeeCCCEEEEEecCC----eEEEEECCCC
Q 010037          473 VSAVCYCPDGKGGIVGTMTG----NCRFYDIKGM  502 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~dg----~v~iwdl~~~  502 (519)
                      --.|.|.-||+++++.+.|.    .|.+||..+.
T Consensus       767 gARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  767 GARILWACDGRIVIVVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             ceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence            35678889999999888765    4788887653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2e-15  Score=149.48  Aligned_cols=226  Identities=18%  Similarity=0.263  Sum_probs=167.4

Q ss_pred             hccccccccC---CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--
Q 010037          220 VKRGWLKKLG---AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--  294 (519)
Q Consensus       220 ~~~~w~~~~~---~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--  294 (519)
                      ....|++++.   .+.+|...|++++|+.+|.+|++|+.|-++.|||.-..+....      .-.+|...|.+++|-|  
T Consensus        32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs------I~TgHtaNIFsvKFvP~t  105 (758)
T KOG1310|consen   32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS------ISTGHTANIFSVKFVPYT  105 (758)
T ss_pred             cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee------eecccccceeEEeeeccC
Confidence            3455666553   5899999999999999999999999999999999874433221      2368999999999999  


Q ss_pred             CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccc
Q 010037          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (519)
Q Consensus       295 dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (519)
                      +.+.++||+.|..|+++|+...+.-. +.                         .                         
T Consensus       106 nnriv~sgAgDk~i~lfdl~~~~~~~-~d-------------------------~-------------------------  134 (758)
T KOG1310|consen  106 NNRIVLSGAGDKLIKLFDLDSSKEGG-MD-------------------------H-------------------------  134 (758)
T ss_pred             CCeEEEeccCcceEEEEecccccccc-cc-------------------------c-------------------------
Confidence            56789999999999999996533100 00                         0                         


Q ss_pred             cccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE-------EEEe----cCCCcEEEEEEeeCCC
Q 010037          375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-------LRVF----SHNNYVTSVAFNPVDD  441 (519)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~-------~~~~----~h~~~V~~v~fsp~d~  441 (519)
                       -...+.+.+..|...|..|+-.|++  .+.+++.||+|+-+|++....       ...+    ..--...|+.++|.+.
T Consensus       135 -~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp  213 (758)
T KOG1310|consen  135 -GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRP  213 (758)
T ss_pred             -CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCC
Confidence             0012344567799999999999998  899999999999999986321       1111    1223568999999899


Q ss_pred             CEEEEEeCCCeEEEEEcCCCc------------------EEeec--cCC-----------CceEEEEEeeCCCEEEEEec
Q 010037          442 NYFISGSIDGKVRIWEVRRCQ------------------VVDYT--DIR-----------EIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       442 ~~l~sgs~Dg~V~iwd~~~~~------------------~~~~~--~~~-----------~~V~~v~~spdg~~l~sgs~  490 (519)
                      .+|++|+.|-..++||.+...                  ++.+.  +|-           ..++-++|+|+|.-|++.-.
T Consensus       214 ~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~  293 (758)
T KOG1310|consen  214 YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG  293 (758)
T ss_pred             ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC
Confidence            999999999999999954211                  12111  110           11567899999998888776


Q ss_pred             CCeEEEEECCCCe
Q 010037          491 TGNCRFYDIKGMQ  503 (519)
Q Consensus       491 dg~v~iwdl~~~~  503 (519)
                      .-.|+++|+..++
T Consensus       294 gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  294 GEHVYLFDVNEDK  306 (758)
T ss_pred             CeEEEEEeecCCC
Confidence            7789999998665

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.64  E-value=5.9e-15  Score=135.83  Aligned_cols=209  Identities=18%  Similarity=0.266  Sum_probs=151.3

Q ss_pred             eecccceeecCCCCeE-EeeecC-------CeEEEeeCCccccc--cccccccceee-cCCCCEEEEEEccCCCEEEEEe
Q 010037          235 IDRHGSATLKPGDHEL-TLGQRM-------RRVRVHPVKKQSRE--LSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGG  303 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~l-asgs~d-------g~I~vw~~~~~~~~--~~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSgs  303 (519)
                      .+.+..++-+|-...+ ++...+       ..+.||.+.+....  ..++.+...+. .|-+.|.|+.|.|++..||+-.
T Consensus        63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~  142 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD  142 (370)
T ss_pred             CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence            3445556777765544 333321       34789998754432  12222222333 4567999999999999998876


Q ss_pred             CCCcEEEEecccCeee-ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037          304 EDGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (519)
Q Consensus       304 ~Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (519)
                       |..|.+|++..+..+ ..+..                                                         .
T Consensus       143 -dn~i~l~~l~ess~~vaev~s---------------------------------------------------------s  164 (370)
T KOG1007|consen  143 -DNNIVLWSLDESSKIVAEVLS---------------------------------------------------------S  164 (370)
T ss_pred             -cCceEEEEcccCcchheeecc---------------------------------------------------------c
Confidence             789999999876542 11110                                                         0


Q ss_pred             EeeccCCCeeEEEEcCC--CeEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          383 EFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~--~~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      .-.+|....++-+|+|.  +.-+....|+++..||+++..+...+.  |...|..+.|+|....+|++|+.||.|+|||.
T Consensus       165 ~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~  244 (370)
T KOG1007|consen  165 ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT  244 (370)
T ss_pred             ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEec
Confidence            01124555677789993  455555678999999999988887775  99999999999966778999999999999999


Q ss_pred             CCCc-EE-eeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECCC
Q 010037          459 RRCQ-VV-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       459 ~~~~-~~-~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~~  501 (519)
                      +..+ ++ .+.+|...|.++.|+|. .++|++|+.|..|.+|....
T Consensus       245 R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  245 RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             cCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            9754 33 68899999999999995 46788999999999998753

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.63  E-value=6.1e-16  Score=159.63  Aligned_cols=248  Identities=15%  Similarity=0.271  Sum_probs=186.7

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      +.+.+|.+.|.|+.|...|.++++|+.|..|+||......       +.....||.+.|+.++.+.+..++|+++.|..|
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI  256 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------CLASCRGHSGDITDLAVSSNNTMIAAASNDKVI  256 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------hhccCCCCccccchhccchhhhhhhhcccCceE
Confidence            3467788999999999999999999999999999976433       334578999999999999999999999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc--cc------
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE--KP------  380 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~------  380 (519)
                      ++|.+..+..+..+..+...++.+.|.+..                    ..+.+++|.+|+.+...+..  .|      
T Consensus       257 rvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------sss~dgt~~~wd~r~~~~~y~prp~~~~~~  316 (1113)
T KOG0644|consen  257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------SSSDDGTCRIWDARLEPRIYVPRPLKFTEK  316 (1113)
T ss_pred             EEEecCCCchHHHHhccccceeeeccCccc--------------------cCCCCCceEeccccccccccCCCCCCcccc
Confidence            999999999999999999999999887765                    22344455555444100000  00      


Q ss_pred             --e----------------eEeeccCCCeeEEEEcCCC-eE-----------EEEeCCCcEEEEECCCCeEEEEec-CCC
Q 010037          381 --L----------------HEFQGHSSEVLDLSWSKNG-FL-----------LSSSADKTVRLWQVGIDRCLRVFS-HNN  429 (519)
Q Consensus       381 --~----------------~~~~~h~~~V~~l~~sp~~-~L-----------~sgs~Dg~V~lWdl~~~~~~~~~~-h~~  429 (519)
                        +                .......-...+++|..+. .+           +++-.+..+.+|++.++..++.+. |..
T Consensus       317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd  396 (1113)
T KOG0644|consen  317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD  396 (1113)
T ss_pred             cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence              0                0001111123334444443 33           333455668889999998887775 999


Q ss_pred             cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       430 ~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ++..+.++|.+.....+++.||+..|||+-.+..++  ..+ ...+...+|++||+.++....-|.++|...-.++.
T Consensus       397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            999999999888889999999999999999887663  334 55566779999999999988889999987754443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.63  E-value=2.7e-15  Score=150.59  Aligned_cols=199  Identities=14%  Similarity=0.250  Sum_probs=148.7

Q ss_pred             cceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccC
Q 010037          239 GSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       239 ~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      ..+.|.| |...||+++.||.|++|.+...............+.+|...|+.+.|+| -.+.|++++.|-+|++||+.++
T Consensus       631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~  710 (1012)
T KOG1445|consen  631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA  710 (1012)
T ss_pred             eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh
Confidence            3467888 5678999999999999999876655555566678999999999999999 4568999999999999999876


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      +.                                                              ...+.+|.+.|.+++|
T Consensus       711 ~~--------------------------------------------------------------~~~l~gHtdqIf~~AW  728 (1012)
T KOG1445|consen  711 KL--------------------------------------------------------------YSRLVGHTDQIFGIAW  728 (1012)
T ss_pred             hh--------------------------------------------------------------hheeccCcCceeEEEE
Confidence            53                                                              3456889999999999


Q ss_pred             cCCC-eEEEEeCCCcEEEEECCCCe-EEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC----eEEEEEcCCCc--EEe-
Q 010037          397 SKNG-FLLSSSADKTVRLWQVGIDR-CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQ--VVD-  465 (519)
Q Consensus       397 sp~~-~L~sgs~Dg~V~lWdl~~~~-~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg----~V~iwd~~~~~--~~~-  465 (519)
                      +|+| .+++.+.||+|++|+-+++. ++..-.  ....--.|.|.- +++++++.+.|.    +|.+||..+-.  .+. 
T Consensus       729 SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t  807 (1012)
T KOG1445|consen  729 SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT  807 (1012)
T ss_pred             CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCccee
Confidence            9999 99999999999999988764 333222  223335577877 899988877764    68888876532  221 


Q ss_pred             -eccCCCceEEEEEeeCCC-EEEEEecCCeEEEEECC
Q 010037          466 -YTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       466 -~~~~~~~V~~v~~spdg~-~l~sgs~dg~v~iwdl~  500 (519)
                       ..+..-.+.--.|.+|.. ++++|-.|..|.+|.+-
T Consensus       808 ~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  808 QVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             eeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence             111112222234555654 46677789999999884

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1e-14  Score=140.95  Aligned_cols=201  Identities=21%  Similarity=0.250  Sum_probs=140.4

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      ..++|+++|..+++|+.||.+|||++......       .....|.+.|.+|.|+|||++|++-+.| ..+||++.++..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhh-------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence            35799999999999999999999998744332       3456799999999999999999999999 999999999965


Q ss_pred             eceeeccC--CCCceEEEeecCCCCe-EEeeccCCceeeeeeeccCCCeeEEEeCCccccccc-cceeEeeccCCCeeEE
Q 010037          319 LDGFDVQD--TDPSCLYFTINHLSQL-IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDL  394 (519)
Q Consensus       319 ~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l  394 (519)
                      +.......  .....+.|........ ..+...            .....+..++...|.... -+....-.-...|.++
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~------------~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl  287 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ------------FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL  287 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEec------------CCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence            54443111  1122233333321111 111110            011111112221111110 0011111224579999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      +.+++| +++.|++||.|.|++..+-++++.++  |...|+.|.|+| +.+++++.+.|....|.-+.-
T Consensus       288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence            999999 99999999999999999999888886  999999999999 999999999998888887654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.62  E-value=1.6e-14  Score=134.83  Aligned_cols=203  Identities=14%  Similarity=0.203  Sum_probs=164.5

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      ..+.|.+|++++..+|++.....|.||......    .....+++..|...|++|.|+|..+.|++|+.|..-++|....
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            456667999999999999999999999887544    1334567889999999999999999999999999999998743


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      +..                                                           -++...+..|+..++++.
T Consensus        87 ~~~-----------------------------------------------------------WkptlvLlRiNrAAt~V~  107 (361)
T KOG1523|consen   87 GGT-----------------------------------------------------------WKPTLVLLRINRAATCVK  107 (361)
T ss_pred             CCe-----------------------------------------------------------eccceeEEEeccceeeEe
Confidence            321                                                           123344566889999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEE---E--EecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC---------
Q 010037          396 WSKNG-FLLSSSADKTVRLWQVGIDRCL---R--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR---------  460 (519)
Q Consensus       396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~---~--~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~---------  460 (519)
                      |+|.. .+++|+.-+.|.||-++...--   +  ...+.+.|+++.|+| ++-+|++|+.|++.||+...-         
T Consensus       108 WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap  186 (361)
T KOG1523|consen  108 WSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAP  186 (361)
T ss_pred             ecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCC
Confidence            99998 9999999999999987654422   1  113778899999999 899999999999999996421         


Q ss_pred             ---------CcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          461 ---------CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       461 ---------~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                               ++++ .+....+.|..+.|+|+|..|+-.+.|+.+.+=|....
T Consensus       187 ~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  187 TPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             CCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence                     1122 23356788999999999999999999999999998765

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=2.9e-15  Score=160.29  Aligned_cols=211  Identities=20%  Similarity=0.323  Sum_probs=165.2

Q ss_pred             eeEeecccceeecCCCC-eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 010037          232 ARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVR  309 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~  309 (519)
                      ..|...|..+.|++.+. +||+|..+|.|.|||+.+....+...     -..-.+.|.+|+|+. ..+.||+++.+|.+.
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~  187 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAV  187 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCce
Confidence            34556677789999877 99999999999999999755443321     123457899999987 456899999999999


Q ss_pred             EEecccCeeeceeeccCC--CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          310 VWKVIEHERLDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |||++..+.+-.+.....  ....+.|.+++...++...-+.            ..-.+..|+.+.   ...+++++.+|
T Consensus       188 iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd------------~~PviqlWDlR~---assP~k~~~~H  252 (1049)
T KOG0307|consen  188 IWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD------------SAPVIQLWDLRF---ASSPLKILEGH  252 (1049)
T ss_pred             eccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC------------CCceeEeecccc---cCCchhhhccc
Confidence            999998876665544433  3456777777766665443222            223445555443   24678888999


Q ss_pred             CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      ...|.+|.|++.+  +|++++.|+.|.+|+.++++.+..+. ....+..+.|+|.+...|++.+.||+|.||.+....
T Consensus       253 ~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  253 QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999999987  99999999999999999999999997 678999999999888899999999999999987654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.61  E-value=1.4e-14  Score=133.56  Aligned_cols=203  Identities=16%  Similarity=0.255  Sum_probs=154.0

Q ss_pred             ccceeecCCCC-----eEEeeecCCeEEEeeCCc--cccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 010037          238 HGSATLKPGDH-----ELTLGQRMRRVRVHPVKK--QSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVR  309 (519)
Q Consensus       238 ~~~~~~sp~g~-----~lasgs~dg~I~vw~~~~--~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~  309 (519)
                      +..+.|.|+..     +||+.  +..+++|.+..  .............-..|..++++..|+. +.++|.+++-|-+..
T Consensus        99 ~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCT  176 (364)
T KOG0290|consen   99 VTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCT  176 (364)
T ss_pred             ccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEE
Confidence            34456666553     45553  45699999873  3322222222222345678999999998 778999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      |||++++..                                                           +.....+-+|..
T Consensus       177 iWdie~~~~-----------------------------------------------------------~~vkTQLIAHDK  197 (364)
T KOG0290|consen  177 IWDIETGVS-----------------------------------------------------------GTVKTQLIAHDK  197 (364)
T ss_pred             EEEEeeccc-----------------------------------------------------------cceeeEEEecCc
Confidence            999987621                                                           001234567999


Q ss_pred             CeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe---c-CCCcEEEEEEeeCCCCEEEEEeCC-CeEEEEEcCCCc
Q 010037          390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF---S-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQ  462 (519)
Q Consensus       390 ~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~---~-h~~~V~~v~fsp~d~~~l~sgs~D-g~V~iwd~~~~~  462 (519)
                      .|.+++|...+  .+++.+.||.||++|++....-..+   . ...+...++|++.+.+|+|+-..| ..|.|.|++...
T Consensus       198 EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~  277 (364)
T KOG0290|consen  198 EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC  277 (364)
T ss_pred             ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC
Confidence            99999999976  9999999999999999976544333   2 366889999999999999987665 479999999754


Q ss_pred             --EEeeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECCC
Q 010037          463 --VVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       463 --~~~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~~  501 (519)
                        +..+..|...|++++|.|. ...|++++.|..+.|||+..
T Consensus       278 tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  278 TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence              3478999999999999995 46799999999999999964

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.60  E-value=2.9e-14  Score=133.49  Aligned_cols=157  Identities=25%  Similarity=0.455  Sum_probs=122.4

Q ss_pred             ccceeecC----CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC----CCEEEEEeCCCcEE
Q 010037          238 HGSATLKP----GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQYLASGGEDGTVR  309 (519)
Q Consensus       238 ~~~~~~sp----~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~LaSgs~Dg~I~  309 (519)
                      +..++|++    +...+++.....++.+|....... ...++... -..|......++|+-+    ..+||.||.-|.|+
T Consensus        41 I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~-ir~lq~y~-D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr  118 (385)
T KOG1034|consen   41 IFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG-IRLLQSYA-DEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR  118 (385)
T ss_pred             cceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc-eeeeeecc-CCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence            33455553    334444444557788888764331 11111110 1247788889999764    34899999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      |.|+.++++                                                              ...+.+|..
T Consensus       119 Vid~~~~~~--------------------------------------------------------------~~~~~ghG~  136 (385)
T KOG1034|consen  119 VIDVVSGQC--------------------------------------------------------------SKNYRGHGG  136 (385)
T ss_pred             EEecchhhh--------------------------------------------------------------ccceeccCc
Confidence            999977764                                                              334678999


Q ss_pred             CeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037          390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (519)
Q Consensus       390 ~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~  459 (519)
                      .|+.|.++|..  +++++|.|..||+|++++..|+..|.    |.+.|.++.|++ ++.+|++++.|.+|++|++.
T Consensus       137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecC
Confidence            99999999988  99999999999999999999999996    999999999999 99999999999999999987

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.4e-13  Score=138.23  Aligned_cols=202  Identities=18%  Similarity=0.271  Sum_probs=155.6

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee-ceeeccCC-CCceEEEeecCCCCeEEeeccCCceeeeeeecc
Q 010037          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL-DGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (519)
Q Consensus       283 H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (519)
                      -..+|.+|+|+.+.+.||.+-.||.|-||++..+-.. ..+..+.. .+..++|.  ...               ..+..
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~---------------RLFS~   86 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGG---------------RLFSS   86 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCC---------------eEEee
Confidence            3578999999999999999999999999999875433 23333322 34445554  112               22344


Q ss_pred             CCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--c-CCCcEEEEEE
Q 010037          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--S-HNNYVTSVAF  436 (519)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~-h~~~V~~v~f  436 (519)
                      +.++.+..|+...    .+++..+....+.|++++.+|.+ .++.|+.||.+..++...+......  . ..+.|.++.|
T Consensus        87 g~sg~i~EwDl~~----lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw  162 (691)
T KOG2048|consen   87 GLSGSITEWDLHT----LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW  162 (691)
T ss_pred             cCCceEEEEeccc----CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence            5566777787765    35577778888999999999999 9999999998888888877665433  2 6789999999


Q ss_pred             eeCCCCEEEEEeCCCeEEEEEcCCCcEEe-----ecc----CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          437 NPVDDNYFISGSIDGKVRIWEVRRCQVVD-----YTD----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       437 sp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-----~~~----~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      +| ++..+++|+.||.|++||+.+++.+.     +..    ....|+++.|-.++ .|++|...|+|.+||...+.+++-
T Consensus       163 ~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS  240 (691)
T KOG2048|consen  163 NP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQS  240 (691)
T ss_pred             cC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhh
Confidence            99 89999999999999999999987664     222    23347888888776 489999999999999998887653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.60  E-value=2.7e-14  Score=139.95  Aligned_cols=184  Identities=16%  Similarity=0.298  Sum_probs=153.0

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecC-CCCEEEEEEccCCC-EEEEEeCCCc
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQ-YLASGGEDGT  307 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~-~LaSgs~Dg~  307 (519)
                      .++.|.+.|.++.++..+.+||+++..|.|.|..+....+.       .+|... ...|.-+.|+|..+ +|.+++++|.
T Consensus       116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-------t~f~~~sgqsvRll~ys~skr~lL~~asd~G~  188 (673)
T KOG4378|consen  116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-------TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA  188 (673)
T ss_pred             hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc-------cceecCCCCeEEEeecccccceeeEeeccCCe
Confidence            46677888889999999999999999999999998754432       123322 34567999999765 5678899999


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |.+||+.....+                                                             .+-...|
T Consensus       189 VtlwDv~g~sp~-------------------------------------------------------------~~~~~~H  207 (673)
T KOG4378|consen  189 VTLWDVQGMSPI-------------------------------------------------------------FHASEAH  207 (673)
T ss_pred             EEEEeccCCCcc-------------------------------------------------------------cchhhhc
Confidence            999998654421                                                             2224569


Q ss_pred             CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-EE
Q 010037          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VV  464 (519)
Q Consensus       388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-~~  464 (519)
                      ..+...|+|+|.+  +|++.+.|+.|.+||++.......+....+...|+|.+ +|.+|++|+..|.|..||++..+ ++
T Consensus       208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv  286 (673)
T KOG4378|consen  208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPV  286 (673)
T ss_pred             cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCc
Confidence            9999999999988  89999999999999999998888888888999999999 99999999999999999999754 34


Q ss_pred             -eeccCCCceEEEEEeeCC
Q 010037          465 -DYTDIREIVSAVCYCPDG  482 (519)
Q Consensus       465 -~~~~~~~~V~~v~~spdg  482 (519)
                       ....|...|++++|.|..
T Consensus       287 ~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  287 AVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eEeeecccceeEEEeeecc
Confidence             577888899999998875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=1.4e-14  Score=144.43  Aligned_cols=219  Identities=18%  Similarity=0.270  Sum_probs=151.6

Q ss_pred             ccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCcccccccc---ccccceeecCCCCEEEEEEccCCCEEEE
Q 010037          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS---LYTGQEFLAHEGSILTMKFSLDGQYLAS  301 (519)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~---~~~~~~l~~H~~~I~~l~fspdg~~LaS  301 (519)
                      ..++-++..|..+|-|+++.+++.++.+|+.||+|+.|++.........   ......+.||++.||.+++|+....|++
T Consensus       334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls  413 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS  413 (577)
T ss_pred             eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence            3455567788999999999999999999999999999988732221111   1233468899999999999999999999


Q ss_pred             EeCCCcEEEEecccCeeeceeeccCCC--CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          302 GGEDGTVRVWKVIEHERLDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                      ++.||+|++|+...... ..+......  +..+.+........+                  .+.....++...+... .
T Consensus       414 cs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~------------------~s~~~~~~~~~~~ev~-s  473 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSL------------------ASFRFGYTSIDDMEVV-S  473 (577)
T ss_pred             ecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhh------------------hhcccccccchhhhhh-h
Confidence            99999999999866654 222222221  222222211100000                  0000001111110000 0


Q ss_pred             ceeEee-------ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 010037          380 PLHEFQ-------GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID  450 (519)
Q Consensus       380 ~~~~~~-------~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D  450 (519)
                      .+..+.       .-...+.-+.++|.+ +.+++..|+.|+++|..++.++.... |...++++++.| ++.+|++|+.|
T Consensus       474 ~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d  552 (577)
T KOG0642|consen  474 DLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHD  552 (577)
T ss_pred             heeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCC
Confidence            001110       112456778888988 99999999999999999999987764 999999999999 99999999999


Q ss_pred             CeEEEEEcCCCcEE
Q 010037          451 GKVRIWEVRRCQVV  464 (519)
Q Consensus       451 g~V~iwd~~~~~~~  464 (519)
                      +.|++|.+....++
T Consensus       553 ~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  553 GSVRLWKLDVKTCV  566 (577)
T ss_pred             ceeehhhccchhee
Confidence            99999999877766

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.59  E-value=2.2e-14  Score=133.98  Aligned_cols=223  Identities=20%  Similarity=0.309  Sum_probs=151.1

Q ss_pred             ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCC---CEEEEEEccCCCEEEEEeCCCcEEEEec-ccCee
Q 010037          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGEDGTVRVWKV-IEHER  318 (519)
Q Consensus       243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~LaSgs~Dg~I~iWd~-~~~~~  318 (519)
                      ..|+..++|+.+.+.-|++||.-.++...+  +.   ...|..   .-.+++|+|||.+|++| ....|+++|+ +.|..
T Consensus       119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraS--y~---~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~  192 (406)
T KOG2919|consen  119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRAS--YR---AYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD  192 (406)
T ss_pred             CCCccceeeeccccCceeeeeccccccccc--hh---hhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence            457888999999999999999987664332  11   112333   34589999999999865 6789999999 44432


Q ss_pred             eceee-------ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          319 LDGFD-------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       319 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      ...+.       .....+.|+.+.+.....+...... .            ...+..++      ...|+..+.+|.+.|
T Consensus       193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q------------~~giy~~~------~~~pl~llggh~gGv  253 (406)
T KOG2919|consen  193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-Q------------RVGIYNDD------GRRPLQLLGGHGGGV  253 (406)
T ss_pred             CcchhhhhcccccccceeeeeeccCCCCcceeeeccc-c------------eeeeEecC------CCCceeeecccCCCe
Confidence            22221       1122334444544443322221111 0            00111111      136788889999999


Q ss_pred             eEEEEcCCC-eEEEEe-CCCcEEEEECCCC-eEEEEec-CCC-cEEEEEE--eeCCCCEEEEEeCCCeEEEEEcCC-Cc-
Q 010037          392 LDLSWSKNG-FLLSSS-ADKTVRLWQVGID-RCLRVFS-HNN-YVTSVAF--NPVDDNYFISGSIDGKVRIWEVRR-CQ-  462 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs-~Dg~V~lWdl~~~-~~~~~~~-h~~-~V~~v~f--sp~d~~~l~sgs~Dg~V~iwd~~~-~~-  462 (519)
                      +.+.|.++| .|++|+ .|..|..||++.. .++..+. |.. .-..|.|  .| .+++|++|+.||.|++||+.+ +. 
T Consensus       254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~  332 (406)
T KOG2919|consen  254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNE  332 (406)
T ss_pred             eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCc
Confidence            999999999 888887 4788999999864 3444443 433 3344555  57 899999999999999999998 55 


Q ss_pred             EEeeccCCCceEEEEEeeCCCEEEEEecC
Q 010037          463 VVDYTDIREIVSAVCYCPDGKGGIVGTMT  491 (519)
Q Consensus       463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~d  491 (519)
                      +..+..+...++.++++|--.++++++..
T Consensus       333 ~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  333 VSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccccccccccccceecCcccceeeeccCc
Confidence            44677788899999999998888887754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.59  E-value=1.5e-12  Score=132.61  Aligned_cols=249  Identities=25%  Similarity=0.449  Sum_probs=185.9

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCC-CCEEEEEE-ccCCC-EEEEEeC-C
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKF-SLDGQ-YLASGGE-D  305 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~f-spdg~-~LaSgs~-D  305 (519)
                      ....+...+.++.+.+.+..++.++.++.+.+|+.......      ...+.++. ..+..+.+ ++++. +++..+. |
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL------IKSLEGLHDSSVSKLALSSPDGNSILLASSSLD  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee------EEEEeccCCCceeeEEEECCCcceEEeccCCCC
Confidence            34455667777899999999999999999999999865411      12344433 37777777 88887 5555455 9


Q ss_pred             CcEEEEeccc-CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC-CCeeEEEeCCccccccccceeE
Q 010037          306 GTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS-SDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       306 g~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      +.+++|++.. ......+..+...+..+.+.+...  .              .+... .+..+.+|+...    ...+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~----~~~~~~  193 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK--L--------------LASGSSLDGTIKLWDLRT----GKPLST  193 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC--E--------------EEecCCCCCceEEEEcCC----CceEEe
Confidence            9999999988 666666776666666666655543  1              11112 355666665554    455677


Q ss_pred             eeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEE-Eec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037          384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR-VFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~-~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~  459 (519)
                      +.+|...|.+++|+|++  .+++++.|+.|++||...+..+. .+. |...+ -..|+| ++.++++++.|+.+++|+++
T Consensus       194 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeec
Confidence            78899999999999988  44444999999999999888877 454 66665 338999 77899999999999999998


Q ss_pred             CCcE-E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          460 RCQV-V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       460 ~~~~-~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .... + ....|...|.++.|.|++..+++++.|+.+++|++.+.....
T Consensus       272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  320 (466)
T COG2319         272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS  320 (466)
T ss_pred             CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence            7664 3 335678899999999999999889999889999998766443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.58  E-value=6e-14  Score=139.00  Aligned_cols=226  Identities=18%  Similarity=0.278  Sum_probs=157.8

Q ss_pred             ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCeeece
Q 010037          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDG  321 (519)
Q Consensus       243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~~~~  321 (519)
                      -.|.+-.|+.|-..|.|.+.+...  .+.+.++.. ...-.+..|+|++|-|.+ ..++.+-.+|.+.+||..-..    
T Consensus       181 a~~~g~dllIGf~tGqvq~idp~~--~~~sklfne-~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~----  253 (636)
T KOG2394|consen  181 ATPKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNE-ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC----  253 (636)
T ss_pred             cCCCCcceEEeeccCceEEecchh--hHHHHhhhh-cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc----
Confidence            356777888898999999988765  223332222 111234789999999944 456667789999999872110    


Q ss_pred             eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-
Q 010037          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-  400 (519)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-  400 (519)
                         ....+   .+..-.....+.+                     ..+..+   ....|+..+.--.+.|..++|+|+| 
T Consensus       254 ---~~t~p---~~~~~k~~~~f~i---------------------~t~ksk---~~rNPv~~w~~~~g~in~f~FS~DG~  303 (636)
T KOG2394|consen  254 ---GATAP---SYQALKDGDQFAI---------------------LTSKSK---KTRNPVARWHIGEGSINEFAFSPDGK  303 (636)
T ss_pred             ---cCCCC---cccccCCCCeeEE---------------------eeeecc---ccCCccceeEeccccccceeEcCCCc
Confidence               00000   0000000000000                     000000   0113444555556789999999999 


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY  478 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~  478 (519)
                      +|++.+.||.+||+|..+.+++..++ --+...|++|+| |++||++|+.|.-|.||.+..++++ .-.+|+.+|+.|+|
T Consensus       304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF  382 (636)
T KOG2394|consen  304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF  382 (636)
T ss_pred             eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence            99999999999999999988877775 567799999999 9999999999999999999999999 46889999999999


Q ss_pred             ee-------------------------------C----C-------------CEEEEEecCCeEEEEECCCCeeee
Q 010037          479 CP-------------------------------D----G-------------KGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       479 sp-------------------------------d----g-------------~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .|                               +    +             ..+.+.+.|-.+.+||+..-.|..
T Consensus       383 Dpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  383 DPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             cccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence            83                               0    1             246677889999999998766655

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=2.2e-13  Score=125.59  Aligned_cols=118  Identities=19%  Similarity=0.453  Sum_probs=95.2

Q ss_pred             CCCeeEEEEcCCC-eEE--EEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCC
Q 010037          388 SSEVLDLSWSKNG-FLL--SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRC  461 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~--sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~~~~  461 (519)
                      .++|.+++|+|+| .|+  .|..++.|.+||++ .+.+..+. ...++.|.|+| +|++|++++.   .|.|.+||+++.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence            4579999999999 543  45577899999997 56666664 56788999999 9999999875   467999999998


Q ss_pred             cEEeeccCCCceEEEEEeeCCCEEEEEec------CCeEEEEECCCCeeeeccc
Q 010037          462 QVVDYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKGMQIFDLST  509 (519)
Q Consensus       462 ~~~~~~~~~~~V~~v~~spdg~~l~sgs~------dg~v~iwdl~~~~l~~~~~  509 (519)
                      +.+....|.. ++.++|+|||++|++++.      |+.++||+..+..+.....
T Consensus       136 ~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~  188 (194)
T PF08662_consen  136 KKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPF  188 (194)
T ss_pred             EEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecch
Confidence            8887666654 789999999999999875      7889999998766655443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.53  E-value=1.5e-12  Score=140.16  Aligned_cols=262  Identities=11%  Similarity=0.085  Sum_probs=165.7

Q ss_pred             eccccee-ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037          236 DRHGSAT-LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (519)
Q Consensus       236 ~~~~~~~-~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~  314 (519)
                      ..+..++ .++++.++++|+.||+|+||+..+............++.--...+.++...+.++.+|.++.||.|++.++.
T Consensus      1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred             ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence            3344445 455569999999999999999987665543333444455457789999999999999999999999999986


Q ss_pred             cCeeeceeeccCCCCceEEEe-ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          315 EHERLDGFDVQDTDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .....+..      ..+.... ....+.+..+............+.......++.|+.+...-...  .......+.|++
T Consensus      1129 ~~~~~~~~------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~--lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1129 HYNVSKRV------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR--LKNQLRHGLVTS 1200 (1431)
T ss_pred             ccccccce------eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh--hhcCccccceeE
Confidence            53111000      0000000 00001111111100000111223334445566676654322111  112234578999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCC--CEEEEEe--CCCeEEEEEcCCCcEEe-
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDD--NYFISGS--IDGKVRIWEVRRCQVVD-  465 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~--~~l~sgs--~Dg~V~iwd~~~~~~~~-  465 (519)
                      ++.+|.+ ++++|+..|.+.+||++-+.++....  +..+++.+..+|..+  ...++++  ..+.|.+|++.++.... 
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEE
Confidence            9999999 99999999999999999999888876  556788888888544  4555544  47789999999875432 


Q ss_pred             -ecc------------------CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          466 -YTD------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       466 -~~~------------------~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                       +..                  +.-.....++..-+..+++|+.|+.|+.||.......
T Consensus      1281 l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1281 LWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             EEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence             221                  1111222334444567889999999999999765544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.52  E-value=9.1e-12  Score=126.74  Aligned_cols=233  Identities=30%  Similarity=0.464  Sum_probs=172.2

Q ss_pred             cCCCC-eEEee-ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEecccCeeec
Q 010037          244 KPGDH-ELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLD  320 (519)
Q Consensus       244 sp~g~-~lasg-s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~~~~~~~  320 (519)
                      ++++. .++.. ..++.+.+|+...      .......+..|...|..++|+|++.++++++. |+.+++|++..+....
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS  192 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence            67777 45543 4499999999875      12223457889999999999999999999886 9999999999877777


Q ss_pred             eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee-EeeccCCCeeEEEEcCC
Q 010037          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKN  399 (519)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~  399 (519)
                      .+..+...+.++.+.+...  ..             ......++.+.+|+..    ....+. .+.+|...+ ...|+|+
T Consensus       193 ~~~~~~~~v~~~~~~~~~~--~~-------------~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~  252 (466)
T COG2319         193 TLAGHTDPVSSLAFSPDGG--LL-------------IASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPD  252 (466)
T ss_pred             eeccCCCceEEEEEcCCcc--eE-------------EEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCC
Confidence            7776666677776663332  11             1113444555555333    223344 577888875 4489999


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeE-EEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec---cCCCce
Q 010037          400 G-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---DIREIV  473 (519)
Q Consensus       400 ~-~L~sgs~Dg~V~lWdl~~~~~-~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V  473 (519)
                      + .+++++.|+.+++|++..... +..+ .|...|.++.|+| ++..+++++.|+.+++||..+.......   .|...+
T Consensus       253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (466)
T COG2319         253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV  331 (466)
T ss_pred             CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence            8 888999999999999987664 4444 5889999999999 8888888999999999999888766432   566679


Q ss_pred             EEEEEeeCCCEEEEE-ecCCeEEEEECCCCe
Q 010037          474 SAVCYCPDGKGGIVG-TMTGNCRFYDIKGMQ  503 (519)
Q Consensus       474 ~~v~~spdg~~l~sg-s~dg~v~iwdl~~~~  503 (519)
                      ..+.|.+++..++.+ ..|+.+++|++....
T Consensus       332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            999994343566666 678899999998776

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=5.2e-13  Score=127.54  Aligned_cols=265  Identities=15%  Similarity=0.194  Sum_probs=166.3

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCcccccccccccccee-ecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      .+..|...++++.|+.++++||+|+.|..++||++...-..... ...+.. ..|...|.|++|....++|.+|+.+++|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~-KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP-KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC-CCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            35567788889999999999999999999999998743221111 111122 3466899999999999999999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceee--------------------------------ee
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK--------------------------------TK  356 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~  356 (519)
                      ...|+.+.+.+..+...........+.......+++.....+.+..                                ..
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            9999999887766544332111111111111111111111111000                                00


Q ss_pred             eeccCCCeeEEEeCCccccccccceeE------eeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-EEEecCC
Q 010037          357 SLRKSSDLTCVVLPPKVFRLLEKPLHE------FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFSHN  428 (519)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~------~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~-~~~~~h~  428 (519)
                      .+..+..+..-+|+.+..   ..++..      +......-..+.|+|+| .|++--....-.+||+-+.+| +..+.|+
T Consensus       210 i~~~~~~~G~~~~D~R~~---~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N  286 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQ---ARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN  286 (609)
T ss_pred             EEeccccCCCCceeeccc---cchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence            011111111112221110   111111      11112233677899999 777777777778889887544 3344443


Q ss_pred             C-------cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC------------------------cEEeeccCCCceEEEE
Q 010037          429 N-------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC------------------------QVVDYTDIREIVSAVC  477 (519)
Q Consensus       429 ~-------~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~------------------------~~~~~~~~~~~V~~v~  477 (519)
                      .       .+.+++|.-  ...+++|+.+-.|+||.+...                        ....+.+|...++.+.
T Consensus       287 ~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR  364 (609)
T KOG4227|consen  287 PNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR  364 (609)
T ss_pred             CCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence            2       356677764  556999999999999987531                        1224678999999999


Q ss_pred             EeeCCCEEEEEecCCeEEEEECC
Q 010037          478 YCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       478 ~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      |+|...+|++.+..+.++||.-.
T Consensus       365 F~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  365 FSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ecCCcceEeccchhhheeccccc
Confidence            99999999999999999999764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=2.9e-14  Score=141.30  Aligned_cols=166  Identities=26%  Similarity=0.442  Sum_probs=131.4

Q ss_pred             ccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCcee
Q 010037          274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID  353 (519)
Q Consensus       274 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (519)
                      +...+++.||++.|+|+.|+.+|.+|++|+.|-.+.|||....+.+..                                
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--------------------------------   87 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--------------------------------   87 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--------------------------------
Confidence            344567899999999999999999999999999999999865443221                                


Q ss_pred             eeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCC----------e
Q 010037          354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGID----------R  420 (519)
Q Consensus       354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~----------~  420 (519)
                                                   .-.||...|.++.|-|..   .+++|..|+.|+|+|+...          .
T Consensus        88 -----------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~  138 (758)
T KOG1310|consen   88 -----------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE  138 (758)
T ss_pred             -----------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccc
Confidence                                         125799999999999953   8999999999999999842          2


Q ss_pred             EEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-----------eeccCCCceEEEEEeeCC-CEEEE
Q 010037          421 CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----------DYTDIREIVSAVCYCPDG-KGGIV  487 (519)
Q Consensus       421 ~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-----------~~~~~~~~V~~v~~spdg-~~l~s  487 (519)
                      ....+. |...|..|+-.|...+.|.+++.||+|+-+|++....-           .+...--...++..+|.. .+|++
T Consensus       139 ~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV  218 (758)
T KOG1310|consen  139 TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV  218 (758)
T ss_pred             hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe
Confidence            233333 88999999999955699999999999999999874311           122222345788899854 67899


Q ss_pred             EecCCeEEEEECC
Q 010037          488 GTMTGNCRFYDIK  500 (519)
Q Consensus       488 gs~dg~v~iwdl~  500 (519)
                      |+.|-..++||.+
T Consensus       219 GgsdpfarLYD~R  231 (758)
T KOG1310|consen  219 GGSDPFARLYDRR  231 (758)
T ss_pred             cCCCchhhhhhhh
Confidence            9999999999953

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=4.8e-13  Score=141.73  Aligned_cols=242  Identities=14%  Similarity=0.212  Sum_probs=166.1

Q ss_pred             CCCeEEeeecCCeEEEeeCCccc---ccc-ccccccce-eecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQS---REL-SSLYTGQE-FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~---~~~-~~~~~~~~-l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~  320 (519)
                      |..++++|+.||.|+||+-....   .++ +.....+. +.+-.+.=.-+.|.....+|+++|.-..|+|||........
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence            44578899999999999754322   111 11111111 11112222457888877777777778999999998887766


Q ss_pred             eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC--eeEEEEcC
Q 010037          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE--VLDLSWSK  398 (519)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~sp  398 (519)
                      .+.....  +++.          ++..+  .......+.+..++.+.+++.+.-.. ...+...+.|+..  |..+.+.+
T Consensus      1202 diP~~s~--t~vT----------aLS~~--~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1202 DIPYGSS--TLVT----------ALSAD--LVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred             ecccCCC--ccce----------eeccc--ccCCceEEEeecCCceEEeecccCCc-cccceeecccCCcccceeEEeec
Confidence            5544321  1111          11110  11122334566777788887765433 2567778889887  99999999


Q ss_pred             CC--eEEEEeCCCcEEEEECCCCeEEEEe---cC---CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee----
Q 010037          399 NG--FLLSSSADKTVRLWQVGIDRCLRVF---SH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY----  466 (519)
Q Consensus       399 ~~--~L~sgs~Dg~V~lWdl~~~~~~~~~---~h---~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~----  466 (519)
                      +|  .|++|+.||.|++||++.......+   .|   .+.++++..|+ +...+|+|+. +.|+||++...++..+    
T Consensus      1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred             CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCc
Confidence            88  7999999999999999985322222   22   34699999999 8999999998 9999999987654422    


Q ss_pred             ---ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          467 ---TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       467 ---~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                         ....+.+.+++|+|---+||+|..|..|.||......+
T Consensus      1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence               22345679999999999999999999999998876543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.51  E-value=3.3e-13  Score=126.20  Aligned_cols=157  Identities=18%  Similarity=0.304  Sum_probs=133.8

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCC
Q 010037          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (519)
Q Consensus       283 H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  362 (519)
                      -..+|+|.+|++|+..+|.+-....|.||.....+.                                            
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------------------------------   44 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------------------------------   44 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence            357899999999999999999999999998755431                                            


Q ss_pred             CeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEEC-CCCeEEE---EecCCCcEEEEEEe
Q 010037          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCLR---VFSHNNYVTSVAFN  437 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl-~~~~~~~---~~~h~~~V~~v~fs  437 (519)
                                     .++.+++..|...|++++|+|.. .|++|+.|..-+||.. ..++...   .+.++..+++|.|+
T Consensus        45 ---------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws  109 (361)
T KOG1523|consen   45 ---------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS  109 (361)
T ss_pred             ---------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence                           13467888999999999999998 9999999999999998 4444333   34599999999999


Q ss_pred             eCCCCEEEEEeCCCeEEEEEcCCCcEE-----eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          438 PVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       438 p~d~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      | .++.|++|+.-..|.||-+....--     ....++..|+++.|+|++-+|++|+.|+.+|||..
T Consensus       110 P-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  110 P-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             C-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence            9 9999999999999999988764422     23456788999999999999999999999999986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.51  E-value=2.7e-11  Score=115.58  Aligned_cols=239  Identities=15%  Similarity=0.200  Sum_probs=163.6

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~  320 (519)
                      +-|+.+---++.......+++.+.++......-        -...+|.+|.++.  +.|+.+=++ .|.|||+.+.+.+.
T Consensus        52 mLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~--------~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLh  120 (391)
T KOG2110|consen   52 MLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI--------FFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLH  120 (391)
T ss_pred             eecccceeEEEecCCCceEEEEEcccCceEEEE--------ecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeeh
Confidence            345444322333333356888888754432211        1346799999964  456666555 49999999999999


Q ss_pred             eeeccCC-CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037          321 GFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (519)
Q Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (519)
                      ++..... ....++++++..+...+...            ....+.+++|+...    -+++..+..|.+.+.+++|+++
T Consensus       121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~------------s~t~GdV~l~d~~n----l~~v~~I~aH~~~lAalafs~~  184 (391)
T KOG2110|consen  121 TIETTPPNPKGLCALSPNNANCYLAYPG------------STTSGDVVLFDTIN----LQPVNTINAHKGPLAALAFSPD  184 (391)
T ss_pred             hhhccCCCccceEeeccCCCCceEEecC------------CCCCceEEEEEccc----ceeeeEEEecCCceeEEEECCC
Confidence            8877633 33456666666544443331            12255666666544    3567788999999999999999


Q ss_pred             C-eEEEEeCCCc-EEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE----------
Q 010037          400 G-FLLSSSADKT-VRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV----------  464 (519)
Q Consensus       400 ~-~L~sgs~Dg~-V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~----------  464 (519)
                      | +|||+|..|+ |||+.+.+++.+..|.   ....|.+++|+| ++.+|++.+..++|+||.+.+...-          
T Consensus       185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~  263 (391)
T KOG2110|consen  185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTS  263 (391)
T ss_pred             CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCc
Confidence            9 9999999998 6899999999999996   445689999999 9999999999999999987642100          


Q ss_pred             ------------------ee----------ccCCCce-EEEEEe--eCCCEEEEEecCCeEEEEECC---CCeeeec
Q 010037          465 ------------------DY----------TDIREIV-SAVCYC--PDGKGGIVGTMTGNCRFYDIK---GMQIFDL  507 (519)
Q Consensus       465 ------------------~~----------~~~~~~V-~~v~~s--pdg~~l~sgs~dg~v~iwdl~---~~~l~~~  507 (519)
                                        ..          ....... ..+.+.  +....+.+++.||.++.|.+.   +|.+.-+
T Consensus       264 ~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~li  340 (391)
T KOG2110|consen  264 WFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALI  340 (391)
T ss_pred             ccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEE
Confidence                              00          0000111 223344  467889999999999999875   3444433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=2.5e-13  Score=128.00  Aligned_cols=204  Identities=16%  Similarity=0.218  Sum_probs=146.6

Q ss_pred             eeEeecccceeecC--CCCeEEeeecCCeEEEeeCCccccccccccccceeecCC-CCEEEEEEccCCCEEEEEe----C
Q 010037          232 ARIIDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGG----E  304 (519)
Q Consensus       232 ~~~~~~~~~~~~sp--~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs----~  304 (519)
                      +++...++.+.|..  ....+.+++.||+|++||++.......     ..+.+|. .+-.|++.+-.++.+++|.    .
T Consensus        67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~-----~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s  141 (376)
T KOG1188|consen   67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR-----ISWTQQSGTPFICLDLNCKKNIIACGTELTRS  141 (376)
T ss_pred             cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh-----eeccCCCCCcceEeeccCcCCeEEeccccccC
Confidence            33444444555555  456788999999999999986554322     2234555 5667888777788888875    3


Q ss_pred             CCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe
Q 010037          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (519)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (519)
                      |-.|.+||++..+...                                                            -.-.
T Consensus       142 ~A~v~lwDvR~~qq~l------------------------------------------------------------~~~~  161 (376)
T KOG1188|consen  142 DASVVLWDVRSEQQLL------------------------------------------------------------RQLN  161 (376)
T ss_pred             ceEEEEEEeccccchh------------------------------------------------------------hhhh
Confidence            6789999997765310                                                            1113


Q ss_pred             eccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC----eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       385 ~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~----~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      ..|...|+++.|+|+.  +|++||.||-|.|||++..    ..+.++.|...|.++.|....-..+.+-+...+..+|++
T Consensus       162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence            5699999999999988  9999999999999999764    345666788889999998733346777788888999987


Q ss_pred             CCCcEE--------------------------------------------------------------ee-ccCCCceEE
Q 010037          459 RRCQVV--------------------------------------------------------------DY-TDIREIVSA  475 (519)
Q Consensus       459 ~~~~~~--------------------------------------------------------------~~-~~~~~~V~~  475 (519)
                      +.+...                                                              .+ .+|...|.+
T Consensus       242 e~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~  321 (376)
T KOG1188|consen  242 EDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRD  321 (376)
T ss_pred             cCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHH
Confidence            653200                                                              00 113334666


Q ss_pred             EEEeeCCCEEEEEecCCeEEEEECC
Q 010037          476 VCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       476 v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +.|...+.++.+|+.||.+.+|...
T Consensus       322 i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  322 ILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             HhhhcccceeeccCCCceEEEEecC
Confidence            7777778899999999999999854

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.51  E-value=6.2e-13  Score=122.76  Aligned_cols=193  Identities=13%  Similarity=0.214  Sum_probs=132.4

Q ss_pred             eeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCee
Q 010037          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       241 ~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      ..|+. +-+++.+.+-|.+..||++..+.    ..+....+.+|.+.|..++|...+ +.+|+.|.||.||++|++..+.
T Consensus       156 FDWne~dp~~igtSSiDTTCTiWdie~~~----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  156 FDWNEVDPNLIGTSSIDTTCTIWDIETGV----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cccccCCcceeEeecccCeEEEEEEeecc----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            33443 44688899999999999998652    122233578999999999999855 5899999999999999987654


Q ss_pred             eceeeccCC---CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          319 LDGFDVQDT---DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       319 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      ...+.....   +..-+.+.....+.++.+..              ....+++.+.+.   ...++..+++|.+.|+.|+
T Consensus       232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~--------------dS~~V~iLDiR~---P~tpva~L~~H~a~VNgIa  294 (364)
T KOG0290|consen  232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAM--------------DSNKVVILDIRV---PCTPVARLRNHQASVNGIA  294 (364)
T ss_pred             ceEEecCCCCCCcceeeccCcCCchHHhhhhc--------------CCceEEEEEecC---CCcceehhhcCcccccceE
Confidence            332222111   11112222222222222222              122333443332   3467889999999999999


Q ss_pred             EcCCC--eEEEEeCCCcEEEEECCCCe------EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037          396 WSKNG--FLLSSSADKTVRLWQVGIDR------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (519)
Q Consensus       396 ~sp~~--~L~sgs~Dg~V~lWdl~~~~------~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i  455 (519)
                      |.|..  .|+|++.|..+.+||+...-      ++..+...+.|+.|+|+|..+..++.+.. +++.|
T Consensus       295 WaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  295 WAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             ecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            99987  99999999999999997532      33344577899999999988889888764 44444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.2e-12  Score=136.23  Aligned_cols=192  Identities=16%  Similarity=0.202  Sum_probs=129.9

Q ss_pred             eeEeecccceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-CCCc
Q 010037          232 ARIIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGT  307 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~  307 (519)
                      ..+...+...+|+|+|+.|+..+.+   ..|++|++..+.....     ..+.+|   ...++|+|||++|+.+. .+|.
T Consensus       200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-----~~~~g~---~~~~~wSPDG~~La~~~~~~g~  271 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-----ASFRGH---NGAPAFSPDGSRLAFASSKDGV  271 (429)
T ss_pred             ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-----ecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence            3344556678999999999987654   4799999875432111     112333   34689999999888764 6887


Q ss_pred             EEEEec--ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          308 VRVWKV--IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       308 I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      +.||.+  .++.                                                               ...+.
T Consensus       272 ~~Iy~~d~~~~~---------------------------------------------------------------~~~lt  288 (429)
T PRK01742        272 LNIYVMGANGGT---------------------------------------------------------------PSQLT  288 (429)
T ss_pred             EEEEEEECCCCC---------------------------------------------------------------eEeec
Confidence            777654  2221                                                               11223


Q ss_pred             ccCCCeeEEEEcCCC-eEEEE-eCCCcEEEEECCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          386 GHSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sg-s~Dg~V~lWdl~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      .+...+....|+|+| .|+.+ ..++...||++... .....+.+..  .+.+|+| ++++|+..+.++ +.+||+.+++
T Consensus       289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~  364 (429)
T PRK01742        289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGS  364 (429)
T ss_pred             cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCC
Confidence            345567789999999 55544 46788888876532 2223334443  4678999 899998887765 5669999887


Q ss_pred             EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      ...+... .....+.|+|||++|+.++.+|.+.+|++
T Consensus       365 ~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        365 TEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             eEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            6544322 23456889999999999999998887765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.1e-13  Score=130.13  Aligned_cols=170  Identities=25%  Similarity=0.318  Sum_probs=139.9

Q ss_pred             ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeee
Q 010037          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (519)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (519)
                      +.+.+.+|.+.|++|.|+.++++||+|+.|..+++|++...-..                                    
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~------------------------------------   91 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR------------------------------------   91 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh------------------------------------
Confidence            34567899999999999999999999999999999998542110                                    


Q ss_pred             eeeccCCCeeEEEeCCccccccccceeEee-ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCC---c
Q 010037          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN---Y  430 (519)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~---~  430 (519)
                                          ...+|+.... .|...|.|++|...+ .|++|..+++|.+.|+.+.+.+.++.|..   .
T Consensus        92 --------------------k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~  151 (609)
T KOG4227|consen   92 --------------------KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGD  151 (609)
T ss_pred             --------------------cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccc
Confidence                                0113333333 366899999999888 99999999999999999999999998766   9


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc----EEeeccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCC
Q 010037          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~  502 (519)
                      |+.+..+| ..+.|++.+.++.|.+||.+..+    ++...........+.|+|.. .+|++++..|-+.+||.+..
T Consensus       152 VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  152 VYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             eeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence            99999999 68999999999999999998765    33455566678889999965 56788899999999998754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=2.9e-12  Score=135.97  Aligned_cols=256  Identities=16%  Similarity=0.206  Sum_probs=163.5

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEecccCe
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      .+.|+|-...++++....+|+|||+.+... +..+...   ..-...|..|.+-.  |..+|++|+.||.||||+-....
T Consensus      1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~---~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNG---AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             eeeecCCCceeEEcCCcceEEEEecccCce-eccccCC---CCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            478999999999999899999999987654 2222111   12345788999866  45689999999999999753221


Q ss_pred             -eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          318 -RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       318 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                       ....+-..............+.+.+..+.-..+     ..+..+.-..+.+|+...-...   .....+....|+.+.-
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-----~Ll~tGd~r~IRIWDa~~E~~~---~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-----HLLVTGDVRSIRIWDAHKEQVV---ADIPYGSSTLVTALSA 1216 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCC-----eEEecCCeeEEEEEecccceeE---eecccCCCccceeecc
Confidence             111221111111122222222222222211111     1123333456667766542211   1111234455666654


Q ss_pred             cC-CC-eEEEEeCCCcEEEEECCCCeE---EEEec-CCCc--EEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE---e
Q 010037          397 SK-NG-FLLSSSADKTVRLWQVGIDRC---LRVFS-HNNY--VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---D  465 (519)
Q Consensus       397 sp-~~-~L~sgs~Dg~V~lWdl~~~~~---~~~~~-h~~~--V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~---~  465 (519)
                      +. .| .++.|..||.|++||.+....   +.... |+..  |..+.+.+..-..|++|+.||.|++||++.....   .
T Consensus      1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred             cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence            43 34 999999999999999987543   33333 7777  9999999843446999999999999999984222   2


Q ss_pred             eccC---CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037          466 YTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       466 ~~~~---~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~  508 (519)
                      ...|   ++.++++..+++...+|+|+. +.|+||++.+.++-.+.
T Consensus      1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc
Confidence            2222   335999999999999999998 99999999987765443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=3.2e-13  Score=130.71  Aligned_cols=162  Identities=31%  Similarity=0.467  Sum_probs=125.0

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE
Q 010037          288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV  367 (519)
Q Consensus       288 ~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  367 (519)
                      .+++|+.+|..|++|+.||++|||++.....                                                 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-------------------------------------------------  178 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-------------------------------------------------  178 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh-------------------------------------------------
Confidence            7899999999999999999999999755432                                                 


Q ss_pred             EeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCC--
Q 010037          368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDD--  441 (519)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~--  441 (519)
                                   +.....|.+.|.+|.|+|+| .|++-+.| ..+||+++++.++....   .......+.|+. ++  
T Consensus       179 -------------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~  243 (398)
T KOG0771|consen  179 -------------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQ  243 (398)
T ss_pred             -------------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCC
Confidence                         23345689999999999999 99999999 99999999997776654   444566777876 44  


Q ss_pred             -CEEE--EEeCCCeEEEEEcCCCc---EE---eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeeccccce
Q 010037          442 -NYFI--SGSIDGKVRIWEVRRCQ---VV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAY  512 (519)
Q Consensus       442 -~~l~--sgs~Dg~V~iwd~~~~~---~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~~~  512 (519)
                       .+++  .-..-+.|+.|++....   .+   +.......|++++.++||++++.|+.||.|-||+..+.+.+++.....
T Consensus       244 ~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH  323 (398)
T KOG0771|consen  244 ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH  323 (398)
T ss_pred             ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhh
Confidence             3333  33345677777764322   12   333445689999999999999999999999999999998887755543


Q ss_pred             e
Q 010037          513 L  513 (519)
Q Consensus       513 ~  513 (519)
                      .
T Consensus       324 ~  324 (398)
T KOG0771|consen  324 L  324 (398)
T ss_pred             e
Confidence            3

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.46  E-value=6.5e-12  Score=115.80  Aligned_cols=148  Identities=20%  Similarity=0.427  Sum_probs=107.0

Q ss_pred             eeecCCCCeEEeeec----------CCeEEEeeCCccccccccccccceee-cCCCCEEEEEEccCCCEEEEE--eCCCc
Q 010037          241 ATLKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASG--GEDGT  307 (519)
Q Consensus       241 ~~~sp~g~~lasgs~----------dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSg--s~Dg~  307 (519)
                      +.|+|+|.+|++-..          -|...+|.++.......      .+. ...++|.+++|+|+|+.||..  ..++.
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~------~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~   84 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE------SIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK   84 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc------eeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence            679999988876332          24456666543222221      122 235679999999999987654  45789


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |.+||+. ++.                                                              +..+  +
T Consensus        85 v~lyd~~-~~~--------------------------------------------------------------i~~~--~   99 (194)
T PF08662_consen   85 VTLYDVK-GKK--------------------------------------------------------------IFSF--G   99 (194)
T ss_pred             cEEEcCc-ccE--------------------------------------------------------------eEee--c
Confidence            9999984 211                                                              1222  2


Q ss_pred             CCCeeEEEEcCCC-eEEEEeC---CCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC------CCeEEEEE
Q 010037          388 SSEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI------DGKVRIWE  457 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~---Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~------Dg~V~iwd  457 (519)
                      ...+..+.|+|+| +|++++.   .|.|.+||+++.+.+..+.|.. ++.++|+| +|++|+++..      |..++||+
T Consensus       100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcC-CCCEEEEEEeccceeccccEEEEE
Confidence            4567789999999 8887764   4679999999999998888765 78999999 9999998874      78899999


Q ss_pred             cCCC
Q 010037          458 VRRC  461 (519)
Q Consensus       458 ~~~~  461 (519)
                      ....
T Consensus       178 ~~G~  181 (194)
T PF08662_consen  178 FQGR  181 (194)
T ss_pred             ecCe
Confidence            8644

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=1.2e-11  Score=129.57  Aligned_cols=254  Identities=18%  Similarity=0.245  Sum_probs=172.4

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC---CEEEEEeCCCcEEEEecccCe
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      ..|++|++.++... ...|+||....+.       +...+.+|..++..+.+.|..   .++.+++.||.|++||...+.
T Consensus        22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~-------~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~   93 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT-GNFVKVYSTATGE-------CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE   93 (792)
T ss_pred             cccccCCcEEEEee-CCEEEEEecchHh-------hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence            47999999887764 5789999987544       334688999999999998844   478899999999999999999


Q ss_pred             eeceeeccCCCCceEEEeecCCC--CeEEeeccCCce---------------------------------eeeeeeccCC
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLS--QLIPIDVDKEKI---------------------------------DKTKSLRKSS  362 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------------------------~~~~~~~~s~  362 (519)
                      .++.+...-....... .+....  ............                                 ........+.
T Consensus        94 Llkt~~~~~~v~~~~~-~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g  172 (792)
T KOG1963|consen   94 LLKTFDNNLPVHALVY-KPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG  172 (792)
T ss_pred             EEEEEecCCceeEEEe-chhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc
Confidence            8887765443222211 010000  000000000000                                 0001111112


Q ss_pred             CeeEEEeCCcccccc--ccc-----eeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC--C--eEEEEec-CCC
Q 010037          363 DLTCVVLPPKVFRLL--EKP-----LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--D--RCLRVFS-HNN  429 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~--~~~-----~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~--~--~~~~~~~-h~~  429 (519)
                      ....++.....+.+.  .+.     ...-..|.-.++|.+++|++ ++++|..||.|.+|.--.  +  .....+. |..
T Consensus       173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~  252 (792)
T KOG1963|consen  173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD  252 (792)
T ss_pred             eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence            222222111111110  000     00112366678999999999 999999999999996332  1  1223333 899


Q ss_pred             cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       430 ~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      .|++++|++ +|.+|++|+..|.+.+|.+.+++..-+.....+|..+.++||+.+.++...|+.|.+..+.+..+
T Consensus       253 ~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~  326 (792)
T KOG1963|consen  253 EVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI  326 (792)
T ss_pred             ccceeEEec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence            999999999 99999999999999999999999666778889999999999999999999999999998866543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.45  E-value=7.6e-11  Score=118.64  Aligned_cols=246  Identities=12%  Similarity=0.130  Sum_probs=145.3

Q ss_pred             ccceeecCCCCeEEee-ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeccc
Q 010037          238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIE  315 (519)
Q Consensus       238 ~~~~~~sp~g~~lasg-s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~~  315 (519)
                      ...++++|++++|+++ ..++.|.+|++.... .+...   ... ...+....+.|+|++++|++++. ++.|.+|++.+
T Consensus        37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~l~~~---~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-ALTFA---AES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             CccEEECCCCCEEEEEECCCCcEEEEEECCCC-ceEEe---eee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            3457999999998765 458899999986321 11111   111 12234678999999998888764 88999999964


Q ss_pred             Ceee-ceeec--cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc-ccccc--eeEeeccCC
Q 010037          316 HERL-DGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-LLEKP--LHEFQGHSS  389 (519)
Q Consensus       316 ~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~--~~~~~~h~~  389 (519)
                      .... .....  ....+..+.+.++. ..++.              ....+..+.+|+..... +....  ..... ...
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~p~g-~~l~v--------------~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~  175 (330)
T PRK11028        112 DGIPVAPIQIIEGLEGCHSANIDPDN-RTLWV--------------PCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGA  175 (330)
T ss_pred             CCCCCCceeeccCCCcccEeEeCCCC-CEEEE--------------eeCCCCEEEEEEECCCCcccccCCCceecC-CCC
Confidence            3211 11111  11122233333322 11111              12233344444433211 11000  00111 123


Q ss_pred             CeeEEEEcCCC-eEEEEeC-CCcEEEEECCC--C--eEEEEec-------CCCcEEEEEEeeCCCCEEEEEeC-CCeEEE
Q 010037          390 EVLDLSWSKNG-FLLSSSA-DKTVRLWQVGI--D--RCLRVFS-------HNNYVTSVAFNPVDDNYFISGSI-DGKVRI  455 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~-Dg~V~lWdl~~--~--~~~~~~~-------h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~i  455 (519)
                      ....++|+|++ +|+++.. +++|.+|++..  +  +.+..+.       +......+.++| ++++++++.. ++.|.+
T Consensus       176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v  254 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISV  254 (330)
T ss_pred             CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEE
Confidence            46789999999 7766655 89999999973  3  2333332       122344689999 8998888754 789999


Q ss_pred             EEcCCCc-EE---eeccCCCceEEEEEeeCCCEEEEEec-CCeEEEEECC--CCeee
Q 010037          456 WEVRRCQ-VV---DYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--GMQIF  505 (519)
Q Consensus       456 wd~~~~~-~~---~~~~~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~--~~~l~  505 (519)
                      |++.... .+   ...........++++|||++|+++.. +++|.+|++.  ++.+.
T Consensus       255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~  311 (330)
T PRK11028        255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT  311 (330)
T ss_pred             EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence            9996532 22   22222234568899999999998775 8899999874  45543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.45  E-value=2.3e-11  Score=116.07  Aligned_cols=232  Identities=14%  Similarity=0.209  Sum_probs=156.5

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC--CcEEEEecccCe
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTVRVWKVIEHE  317 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D--g~I~iWd~~~~~  317 (519)
                      ...|+.+...|..|+.+| .+++......+-..       .....-.|.-+-|+..  ++|..+.+  +.+++.++..+.
T Consensus        10 ~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-------~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen   10 FIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-------KDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             eeeeccceeEEEccCCCc-eeEEecCchHHhhc-------ccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence            355888999999999998 57777664333111       1112235666777644  55555544  458888887776


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      .+..+..+.              .++.+.+...+...      .....+++++.+.+.+... +.....+...+..++.+
T Consensus        80 ~ICe~~fpt--------------~IL~VrmNr~RLvV------~Lee~IyIydI~~MklLhT-I~t~~~n~~gl~AlS~n  138 (391)
T KOG2110|consen   80 TICEIFFPT--------------SILAVRMNRKRLVV------CLEESIYIYDIKDMKLLHT-IETTPPNPKGLCALSPN  138 (391)
T ss_pred             eEEEEecCC--------------ceEEEEEccceEEE------EEcccEEEEecccceeehh-hhccCCCccceEeeccC
Confidence            555544322              22333222222111      1122356666655543211 11222345556677776


Q ss_pred             CCC-eEEE--EeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCcEEe-ecc--C
Q 010037          398 KNG-FLLS--SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVD-YTD--I  469 (519)
Q Consensus       398 p~~-~L~s--gs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~iwd~~~~~~~~-~~~--~  469 (519)
                      +.+ +|+-  ....|.|.|||+.+-+++..+. |.+.+-|++|+| +|.+||++|..|+ |||+.+.+++.+. +..  .
T Consensus       139 ~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~  217 (391)
T KOG2110|consen  139 NANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY  217 (391)
T ss_pred             CCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCce
Confidence            666 6664  2356899999999999998886 999999999999 9999999999886 8999999998873 322  2


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ...|.+++|+||+++|++.+..++|+||.+....
T Consensus       218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            4568899999999999999999999999997654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.44  E-value=2.7e-11  Score=122.94  Aligned_cols=209  Identities=16%  Similarity=0.232  Sum_probs=139.4

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCcccc-ccccccc---------------------------ccee
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-ELSSLYT---------------------------GQEF  280 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~-~~~~~~~---------------------------~~~l  280 (519)
                      ..+++|.+.|.+++++.+|+.+|+|+.|+.|.||.-+-... ..+....                           .+..
T Consensus        47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V  126 (1081)
T KOG1538|consen   47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV  126 (1081)
T ss_pred             cccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH
Confidence            45778899999999999999999999999999998652110 0000000                           0011


Q ss_pred             ecC--CCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeec---cCCCCceEEEeecCCCCeEEeeccCCceeee
Q 010037          281 LAH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (519)
Q Consensus       281 ~~H--~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (519)
                      ..|  ...|.+++|..||+||+.|-.||+|.|-+- +++....++.   ...++..+.|++.......            
T Consensus       127 ~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~------------  193 (1081)
T KOG1538|consen  127 SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRN------------  193 (1081)
T ss_pred             HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCcc------------
Confidence            122  235778889999999999999999998864 3333333433   3445556666665431110            


Q ss_pred             eeeccCCCeeEEEeCCcc--ccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcE
Q 010037          356 KSLRKSSDLTCVVLPPKV--FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV  431 (519)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V  431 (519)
                            .-..++-|....  ..+.++.+..-+.-.-...|+.+.++| +++.|+.|+.+++|. +.|-.+.++. ....|
T Consensus       194 ------di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WI  266 (1081)
T KOG1538|consen  194 ------DILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWI  266 (1081)
T ss_pred             ------ceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeE
Confidence                  000111121110  112222233223334456799999999 999999999999995 6677777776 77899


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          432 TSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       432 ~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      +.|+..| ++++++.|+.||+|..|++
T Consensus       267 WtV~~~P-NsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  267 WTVQAKP-NSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EEEEEcc-CCceEEEEEccCeeehhhh
Confidence            9999999 9999999999999999975

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.9e-11  Score=128.20  Aligned_cols=257  Identities=19%  Similarity=0.296  Sum_probs=152.9

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      +.+.++||+++++|+|..||+|.||.--....   .-...+.+.-|...|.++.|+++|.+|+|||..|.+.+|.+.+++
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~---~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSD---DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEecccccc---ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            56789999999999999999999997654211   122345678899999999999999999999999999999999988


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeec-----------c---------CCCeeEEEeCCccc--c
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR-----------K---------SSDLTCVVLPPKVF--R  375 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---------s~~~~~~~~~~~~~--~  375 (519)
                       .+-+......+..+.++++  +..+++......+.......           .         ..-.....++++..  .
T Consensus       285 -kqfLPRLgs~I~~i~vS~d--s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  285 -KQFLPRLGSPILHIVVSPD--SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             -cccccccCCeeEEEEEcCC--CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence             3333333334444444433  33333333333222111100           0         00001111222110  0


Q ss_pred             ccccc--eeEee----------------------ccCCCeeEEEEcCCC-eEEEEe--------CC--CcEEEEECCCCe
Q 010037          376 LLEKP--LHEFQ----------------------GHSSEVLDLSWSKNG-FLLSSS--------AD--KTVRLWQVGIDR  420 (519)
Q Consensus       376 ~~~~~--~~~~~----------------------~h~~~V~~l~~sp~~-~L~sgs--------~D--g~V~lWdl~~~~  420 (519)
                      +.+++  ++.+.                      .+.-.++.++.+-.| +++|.-        .|  -.+++|......
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~  441 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS  441 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence            00111  11110                      011124444444455 555542        22  246778665443


Q ss_pred             EEEEe------cCCCcEEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCc----------EE-eeccCCCceEEEEEeeCC
Q 010037          421 CLRVF------SHNNYVTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQ----------VV-DYTDIREIVSAVCYCPDG  482 (519)
Q Consensus       421 ~~~~~------~h~~~V~~v~fsp-~d~~~l~sgs~Dg~V~iwd~~~~~----------~~-~~~~~~~~V~~v~~spdg  482 (519)
                      .-..+      +|...+...++.+ .....+++++.||.++||-+...+          +. .-..|..++++++|+.||
T Consensus       442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG  521 (792)
T KOG1963|consen  442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG  521 (792)
T ss_pred             ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC
Confidence            22222      3776665555544 233389999999999999883321          11 112378899999999999


Q ss_pred             CEEEEEecCCeEEEEECCC
Q 010037          483 KGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       483 ~~l~sgs~dg~v~iwdl~~  501 (519)
                      .. ++.+.+++|.+||..+
T Consensus       522 sl-la~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  522 SL-LAVSFDDTITIWDYDT  539 (792)
T ss_pred             cE-EEEecCCEEEEecCCC
Confidence            75 5556688999999987

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=8e-12  Score=119.92  Aligned_cols=202  Identities=15%  Similarity=0.261  Sum_probs=149.6

Q ss_pred             CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC-EEEEEeCC--CcEEEEecccCeeeceee
Q 010037          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGED--GTVRVWKVIEHERLDGFD  323 (519)
Q Consensus       247 g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~D--g~I~iWd~~~~~~~~~~~  323 (519)
                      +..|++|-.+|.+.+|..+.....-+.+   ..+..| ..+..|.-++... ++|+||..  ..+.|||+...+.+..-+
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l---~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK  190 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKL---IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK  190 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccc---eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence            3467788899999999988444221111   122223 4566777777544 55668888  789999998774332211


Q ss_pred             ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC--C-
Q 010037          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-  400 (519)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~-  400 (519)
                      ......                                .+..+                     .-.++++.|-+.  . 
T Consensus       191 NvpnD~--------------------------------L~LrV---------------------PvW~tdi~Fl~g~~~~  217 (412)
T KOG3881|consen  191 NVPNDR--------------------------------LGLRV---------------------PVWITDIRFLEGSPNY  217 (412)
T ss_pred             CCCCcc--------------------------------cccee---------------------eeeeccceecCCCCCc
Confidence            111000                                00011                     123556677665  4 


Q ss_pred             eEEEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEE
Q 010037          401 FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAV  476 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v  476 (519)
                      .|++++.-+.||+||.+.+ +++..|. -..+++++...| +++++++|..-|.+..+|++.++.+  .+.+..+.|++|
T Consensus       218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi  296 (412)
T KOG3881|consen  218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI  296 (412)
T ss_pred             eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence            9999999999999999875 5777776 678899999999 9999999999999999999999888  378899999999


Q ss_pred             EEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          477 CYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       477 ~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ..+|.+++|++++.|..|||+|+.+.+++.
T Consensus       297 h~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             EEcCCCceEEeeccceeEEEeecccchhhh
Confidence            999999999999999999999999976643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=3e-11  Score=125.68  Aligned_cols=200  Identities=14%  Similarity=0.111  Sum_probs=132.6

Q ss_pred             ecccceeecCCCCeEEeee---cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE-eCCC--cEE
Q 010037          236 DRHGSATLKPGDHELTLGQ---RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDG--TVR  309 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs---~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg-s~Dg--~I~  309 (519)
                      ..+...+|+|||+.|+..+   ....|.+|++..+....        +....+.+..+.|+|||+.|+.. +.+|  .|.
T Consensus       199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence            3455689999999998654   34578999987543221        11222334468999999988754 4455  477


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +||+.+++..                                                               .+..+..
T Consensus       271 ~~d~~tg~~~---------------------------------------------------------------~lt~~~~  287 (429)
T PRK03629        271 VMDLASGQIR---------------------------------------------------------------QVTDGRS  287 (429)
T ss_pred             EEECCCCCEE---------------------------------------------------------------EccCCCC
Confidence            7887655421                                                               1111233


Q ss_pred             CeeEEEEcCCC-eEEEEeCC-Cc--EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCc
Q 010037          390 EVLDLSWSKNG-FLLSSSAD-KT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQ  462 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~D-g~--V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~iwd~~~~~  462 (519)
                      .+....|+|+| .|+..+.+ +.  |.++|+.++.......+........|+| ++++|+..+.+   ..|.+||+.+++
T Consensus       288 ~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        288 NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCC
Confidence            46678999999 67666543 44  4555777766554444555667899999 88888776543   358899999887


Q ss_pred             EEeeccCCCceEEEEEeeCCCEEEEEecCCe---EEEEECCCCeeeecc
Q 010037          463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGN---CRFYDIKGMQIFDLS  508 (519)
Q Consensus       463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~---v~iwdl~~~~l~~~~  508 (519)
                      ...+... .......|+|||++|+.++.++.   +.++++.+.....+.
T Consensus       367 ~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~  414 (429)
T PRK03629        367 VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  414 (429)
T ss_pred             eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence            6654432 23456789999999999888764   778888766555553

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=2.9e-11  Score=126.23  Aligned_cols=205  Identities=13%  Similarity=0.110  Sum_probs=139.4

Q ss_pred             eeeEeecccceeecCCCCeEEeeec---CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCC
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG  306 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~---dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg  306 (519)
                      ++.+...+.+.+|+|||+.|+..+.   +..|.+|++..+..        +.+..+.+.+....|+|||+.|+ +.+.++
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--------EEeecCCCcccCcEECCCCCEEEEEEecCC
Confidence            3334445667899999999988653   46899999875432        12445667788899999998775 556666


Q ss_pred             c--EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe
Q 010037          307 T--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (519)
Q Consensus       307 ~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (519)
                      .  |.+||+.++..                                                               ..+
T Consensus       269 ~~~Iy~~d~~~~~~---------------------------------------------------------------~~L  285 (435)
T PRK05137        269 NTDIYTMDLRSGTT---------------------------------------------------------------TRL  285 (435)
T ss_pred             CceEEEEECCCCce---------------------------------------------------------------EEc
Confidence            5  55556654432                                                               112


Q ss_pred             eccCCCeeEEEEcCCC-eEEEEeC-C--CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CeEEEEE
Q 010037          385 QGHSSEVLDLSWSKNG-FLLSSSA-D--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWE  457 (519)
Q Consensus       385 ~~h~~~V~~l~~sp~~-~L~sgs~-D--g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~iwd  457 (519)
                      ..+........|+|+| .|+..+. +  ..|.+||+.++.......+...+....|+| ++++|+....+   ..|.+||
T Consensus       286 t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d  364 (435)
T PRK05137        286 TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMK  364 (435)
T ss_pred             cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEE
Confidence            2233345567999999 6666553 3  368888988776655554566677889999 89988876643   3688899


Q ss_pred             cCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC------CeEEEEECCCCeeeecc
Q 010037          458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT------GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       458 ~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d------g~v~iwdl~~~~l~~~~  508 (519)
                      +.++....+.. ...+..+.|+|||+.|+..+.+      ..+.++|+.++....+.
T Consensus       365 ~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        365 PDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             CCCCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            86655443322 3346788999999998876543      35888898877665544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3.2e-11  Score=125.83  Aligned_cols=202  Identities=17%  Similarity=0.184  Sum_probs=135.5

Q ss_pred             EeecccceeecCCCCeEEeeec---CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCC--c
Q 010037          234 IIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG--T  307 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~---dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg--~  307 (519)
                      +...+.+.+|+|+|+.|+..+.   ...|.+|++..+...        .+..+.+...++.|+|||+.|+ +.+.+|  .
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~  273 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--------LVASFRGINGAPSFSPDGRRLALTLSRDGNPE  273 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--------EeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence            3345566899999999988763   346999998754421        1233344455789999999775 455555  4


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |.+||+.+++..                                                               .+..+
T Consensus       274 Iy~~d~~~g~~~---------------------------------------------------------------~lt~~  290 (433)
T PRK04922        274 IYVMDLGSRQLT---------------------------------------------------------------RLTNH  290 (433)
T ss_pred             EEEEECCCCCeE---------------------------------------------------------------ECccC
Confidence            888887655421                                                               11223


Q ss_pred             CCCeeEEEEcCCC-eEEEEe-CCCc--EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---eEEEEEcCC
Q 010037          388 SSEVLDLSWSKNG-FLLSSS-ADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRR  460 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs-~Dg~--V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~iwd~~~  460 (519)
                      .......+|+|+| .|+.++ .++.  |.++|+.+++......+......++|+| ++++++..+.++   .|.+||+.+
T Consensus       291 ~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~  369 (433)
T PRK04922        291 FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLST  369 (433)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCC
Confidence            3334567899999 666655 3444  6777777776554444445566799999 899888765443   699999988


Q ss_pred             CcEEeeccCCCceEEEEEeeCCCEEEEEecC---CeEEEEECCCCeeeecc
Q 010037          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d---g~v~iwdl~~~~l~~~~  508 (519)
                      ++...+.. ........|+|||++|+..+.+   +.+.++++.++....+.
T Consensus       370 g~~~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~  419 (433)
T PRK04922        370 GSVRTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV  419 (433)
T ss_pred             CCeEECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence            87664443 2245567999999988877653   45888888766555443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.41  E-value=1.2e-11  Score=129.18  Aligned_cols=225  Identities=18%  Similarity=0.223  Sum_probs=150.8

Q ss_pred             CeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeee--ceee----ccCCCC
Q 010037          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERL--DGFD----VQDTDP  329 (519)
Q Consensus       257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~--~~~~----~~~~~~  329 (519)
                      +.+.||+++.....       +....-...|.|++|+| +..+||.|..+|+|.+||+..+...  ..+.    .+..++
T Consensus       222 ~~~~vW~~~~p~~P-------e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTP-------ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV  294 (555)
T ss_pred             ceEEEEecCCCCCc-------eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe
Confidence            47999999864211       11223467899999999 6778899999999999999877652  1111    122222


Q ss_pred             ceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc-cce-eEee------ccCCCeeEEEEcCCC-
Q 010037          330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPL-HEFQ------GHSSEVLDLSWSKNG-  400 (519)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~-~~~~------~h~~~V~~l~~sp~~-  400 (519)
                      ..+.|..+             ... ...+..+.|+.+..|..+...... ... ....      .....+++++|.+.. 
T Consensus       295 ~~vvW~~~-------------~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p  360 (555)
T KOG1587|consen  295 TAVVWLQN-------------EHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP  360 (555)
T ss_pred             EEEEEecc-------------CCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC
Confidence            22333222             222 334555668888888766554411 111 1111      223578999999977 


Q ss_pred             -eEEEEeCCCcEEEEE---CCCCe-----EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC-CCcEE-eecc
Q 010037          401 -FLLSSSADKTVRLWQ---VGIDR-----CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVV-DYTD  468 (519)
Q Consensus       401 -~L~sgs~Dg~V~lWd---l~~~~-----~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~-~~~~~-~~~~  468 (519)
                       .++.|+.+|.|.-=+   .....     .+..+ .|.+.|+++.++|.....|++++ |-+|+||.-. ...++ .+..
T Consensus       361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~  439 (555)
T KOG1587|consen  361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS  439 (555)
T ss_pred             ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh
Confidence             999999999988733   22222     12122 38999999999997667777766 9999999877 44444 5667


Q ss_pred             CCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCCe
Q 010037          469 IREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       469 ~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +...|++++|||.. ..++++..||.+.|||+....
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence            77779999999976 457778889999999997543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.41  E-value=3.5e-10  Score=106.16  Aligned_cols=212  Identities=12%  Similarity=0.182  Sum_probs=138.8

Q ss_pred             CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc-cCeeeceeeccCCCCceEEEe
Q 010037          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQDTDPSCLYFT  335 (519)
Q Consensus       257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~  335 (519)
                      ..|.|||-.+... ..      ++ ....+|.+|.+.++  .|+..- .+.|.||.+. ..+.+..+.....+...+...
T Consensus        75 NkviIWDD~k~~~-i~------el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   75 NKVIIWDDLKERC-II------EL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             ceEEEEecccCcE-EE------EE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence            5799999432221 11      11 24678999999865  465554 5689999997 455566665544443334444


Q ss_pred             ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCc-EEE
Q 010037          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VRL  413 (519)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~-V~l  413 (519)
                      +.....++++....             -+.+.+.+......  .+-..+.+|.+.|.|++.+.+| .+||+|..|+ |||
T Consensus       144 ~~~~k~~LafPg~k-------------~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI  208 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFK-------------TGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI  208 (346)
T ss_pred             CCCCceEEEcCCCc-------------cceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence            44333333322211             12222222111111  0235678999999999999999 9999999998 799


Q ss_pred             EECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc---E-----------E-e----------
Q 010037          414 WQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---V-----------V-D----------  465 (519)
Q Consensus       414 Wdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~---~-----------~-~----------  465 (519)
                      ||..++..+..+.   ....|.||+|+| +..+|++.|..|+|+|+.++...   .           + +          
T Consensus       209 Fdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~  287 (346)
T KOG2111|consen  209 FDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAK  287 (346)
T ss_pred             EEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEE
Confidence            9999999999996   667899999999 99999999999999999987522   1           1 1          


Q ss_pred             eccCCCceEEEEEeeCCCEEEEEecCCeEE
Q 010037          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCR  495 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~  495 (519)
                      +.-..+....++|-.+.+-++..+.||.-+
T Consensus       288 f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~  317 (346)
T KOG2111|consen  288 FQLPQGTQCIIAFGSETNTVIAICADGSYY  317 (346)
T ss_pred             EEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence            111223444566766655666666777643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=8.4e-11  Score=106.28  Aligned_cols=197  Identities=14%  Similarity=0.195  Sum_probs=141.7

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      -.++++.+.|..+-++.++.|+.++-||++.+..       ..+++||++-|.++.--.....++||++||++||||..+
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-------~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-------QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT  187 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEE-------EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence            4566788999888888888999999999986553       356899999999999855455688999999999999999


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC-CCeeEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDL  394 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l  394 (519)
                      +++...+......                                                     ..+..|. ..|-++
T Consensus       188 ~k~v~~ie~yk~~-----------------------------------------------------~~lRp~~g~wigal  214 (325)
T KOG0649|consen  188 QKHVSMIEPYKNP-----------------------------------------------------NLLRPDWGKWIGAL  214 (325)
T ss_pred             cceeEEeccccCh-----------------------------------------------------hhcCcccCceeEEE
Confidence            9876655432211                                                     1122232 346777


Q ss_pred             EEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE
Q 010037          395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS  474 (519)
Q Consensus       395 ~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~  474 (519)
                      +-+.+ +|+.|+ ...+.+|+++..++..+|.....|..+.|.   ...+++++....|.-|.+..--...........+
T Consensus       215 a~~ed-WlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~---~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~  289 (325)
T KOG0649|consen  215 AVNED-WLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFV---DDCVLIGGEGNHVQSYTLNGVLQANIPVESTACY  289 (325)
T ss_pred             eccCc-eEEecC-CCceeEEeccCCCceEEEecccceeEeeee---cceEEEeccccceeeeeeccEEEEeccCCcccee
Confidence            76544 666655 467999999999999999999999999995   4678888888889999886533333333333455


Q ss_pred             EEEEeeCC-CEEEEEecCCeEEEE
Q 010037          475 AVCYCPDG-KGGIVGTMTGNCRFY  497 (519)
Q Consensus       475 ~v~~spdg-~~l~sgs~dg~v~iw  497 (519)
                      +..|+... ++|-.++....+.|+
T Consensus       290 s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  290 SASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             eecccCCceEEEEecccceeeeee
Confidence            55555443 344456666666665

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.37  E-value=1.6e-13  Score=142.01  Aligned_cols=120  Identities=31%  Similarity=0.607  Sum_probs=106.9

Q ss_pred             cccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCce
Q 010037          273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI  352 (519)
Q Consensus       273 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (519)
                      .....+.+.+|..+|+|+.|...|.++++|+.|..|+||...+..+                                  
T Consensus       179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~----------------------------------  224 (1113)
T KOG0644|consen  179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC----------------------------------  224 (1113)
T ss_pred             HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh----------------------------------
Confidence            3445566889999999999999999999999999999999877664                                  


Q ss_pred             eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCc
Q 010037          353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY  430 (519)
Q Consensus       353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~  430 (519)
                                                  +....||.+.|++++.+.++ .+++++.|..|++|.+.++.++.++. |.+.
T Consensus       225 ----------------------------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga  276 (1113)
T KOG0644|consen  225 ----------------------------LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA  276 (1113)
T ss_pred             ----------------------------hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc
Confidence                                        33457899999999999988 99999999999999999999998875 9999


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (519)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~  459 (519)
                      |++|+|+|     +.+.+.||++++||.+
T Consensus       277 vtaiafsP-----~~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  277 VTAIAFSP-----RASSSDDGTCRIWDAR  300 (1113)
T ss_pred             eeeeccCc-----cccCCCCCceEecccc
Confidence            99999999     3477889999999988

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=3.4e-11  Score=114.46  Aligned_cols=199  Identities=14%  Similarity=0.289  Sum_probs=141.4

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceee-cCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCee
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      ++|++.-..+|++..|-.|++|+-....  ..      .++ .-+..|.||+|-|.+ ..|+.|+.. -|.||.......
T Consensus       104 ~aWhqH~~~fava~nddvVriy~ksst~--pt------~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln  174 (445)
T KOG2139|consen  104 VAWHQHIIAFAVATNDDVVRIYDKSSTC--PT------KLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN  174 (445)
T ss_pred             EeechhhhhhhhhccCcEEEEeccCCCC--Cc------eecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence            6899977788899999999999876411  11      111 234679999999954 577777765 589998743211


Q ss_pred             eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (519)
                      ....         +..-..+                                       ...+....+| ..|++|.|.+
T Consensus       175 ~~r~---------~~~~s~~---------------------------------------~~qvl~~pgh-~pVtsmqwn~  205 (445)
T KOG2139|consen  175 ANRN---------IRMMSTH---------------------------------------HLQVLQDPGH-NPVTSMQWNE  205 (445)
T ss_pred             cccc---------ccccccc---------------------------------------chhheeCCCC-ceeeEEEEcC
Confidence            0000         0000000                                       0012223455 7899999999


Q ss_pred             CC-eEEEEe-CCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc-CCCcEEeeccCCCceE
Q 010037          399 NG-FLLSSS-ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVS  474 (519)
Q Consensus       399 ~~-~L~sgs-~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~-~~~~~~~~~~~~~~V~  474 (519)
                      +| .|++++ .|..|.|||..++.++... ...+.++-+.|+| |+.+|.++.-|+..++|+. ++.....+.-..+.|.
T Consensus       206 dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvq  284 (445)
T KOG2139|consen  206 DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQ  284 (445)
T ss_pred             CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCcee
Confidence            99 888877 5678999999999888776 3667789999999 9999999999999999955 4455556777777999


Q ss_pred             EEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          475 AVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       475 ~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      ..+|+|+|..|+.+.. |.-++|.+
T Consensus       285 tacWspcGsfLLf~~s-gsp~lysl  308 (445)
T KOG2139|consen  285 TACWSPCGSFLLFACS-GSPRLYSL  308 (445)
T ss_pred             eeeecCCCCEEEEEEc-CCceEEEE
Confidence            9999999998776553 34456655

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=2.2e-10  Score=119.64  Aligned_cols=178  Identities=13%  Similarity=0.076  Sum_probs=128.0

Q ss_pred             CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---CCcEEEEecccCeeeceeeccCCCCceE
Q 010037          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCL  332 (519)
Q Consensus       256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  332 (519)
                      ...|.++|.....        .+.+..|...+...+|+|||+.|+..+.   +..|.+||+.+++..             
T Consensus       181 ~~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-------------  239 (435)
T PRK05137        181 IKRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-------------  239 (435)
T ss_pred             ceEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-------------
Confidence            3478888875322        2345678889999999999999888764   468999998766421             


Q ss_pred             EEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE-EEEeCCCc
Q 010037          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKT  410 (519)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L-~sgs~Dg~  410 (519)
                                                                        .+..+.+.+...+|+|+| .| ++.+.++.
T Consensus       240 --------------------------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~  269 (435)
T PRK05137        240 --------------------------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN  269 (435)
T ss_pred             --------------------------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence                                                              112234456678999999 55 46666655


Q ss_pred             --EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEE
Q 010037          411 --VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG  485 (519)
Q Consensus       411 --V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l  485 (519)
                        |.+||+.++.......+....+...|+| +++.|+..+. +|  .|++||+.++....+......+....|+|||+.|
T Consensus       270 ~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        270 TDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             ceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence              7777998887766555666778899999 8888887663 33  6888898887766655555567778999999999


Q ss_pred             EEEecC---CeEEEEECCCCeee
Q 010037          486 IVGTMT---GNCRFYDIKGMQIF  505 (519)
Q Consensus       486 ~sgs~d---g~v~iwdl~~~~l~  505 (519)
                      +....+   ..|.+||+.++...
T Consensus       349 a~~~~~~~~~~i~~~d~~~~~~~  371 (435)
T PRK05137        349 AFTKQGGGQFSIGVMKPDGSGER  371 (435)
T ss_pred             EEEEcCCCceEEEEEECCCCceE
Confidence            887653   35888998665443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.6e-10  Score=120.23  Aligned_cols=197  Identities=21%  Similarity=0.215  Sum_probs=129.0

Q ss_pred             eecccceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCCcEEE
Q 010037          235 IDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRV  310 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~I~i  310 (519)
                      ...+.+.+|+|+|+.|+..+..   ..|.+|++..+...        .+....+.+....|+|||+.|+ +.+.+|...|
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  266 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--------VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQI  266 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence            3455568999999999876643   45999998755421        1223345567889999999876 5677888777


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      |.+.....                                                             ....+..+...
T Consensus       267 y~~d~~~~-------------------------------------------------------------~~~~lt~~~~~  285 (427)
T PRK02889        267 YTVNADGS-------------------------------------------------------------GLRRLTQSSGI  285 (427)
T ss_pred             EEEECCCC-------------------------------------------------------------CcEECCCCCCC
Confidence            76532110                                                             01112223334


Q ss_pred             eeEEEEcCCC-eEEEEe-CCCcEEEEEC--CCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---eEEEEEcCCCcE
Q 010037          391 VLDLSWSKNG-FLLSSS-ADKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQV  463 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs-~Dg~V~lWdl--~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~iwd~~~~~~  463 (519)
                      .....|+|+| .|+..+ .++...||.+  .++...............+|+| ++++++..+.++   .|.+||+.+++.
T Consensus       286 ~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        286 DTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            5567899999 666554 3456666654  4554433333344455789999 999988777654   699999998876


Q ss_pred             EeeccCCCceEEEEEeeCCCEEEEEecCC---eEEEEECCCC
Q 010037          464 VDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKGM  502 (519)
Q Consensus       464 ~~~~~~~~~V~~v~~spdg~~l~sgs~dg---~v~iwdl~~~  502 (519)
                      ..+... .......|+|||+.|+.++.++   .+.+.++.+.
T Consensus       365 ~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~  405 (427)
T PRK02889        365 TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR  405 (427)
T ss_pred             EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence            654433 3346789999999988877654   3666666443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=5.5e-11  Score=123.86  Aligned_cols=176  Identities=17%  Similarity=0.131  Sum_probs=121.8

Q ss_pred             CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEecccCeeeceeeccCCCCceE
Q 010037          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL  332 (519)
Q Consensus       256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~  332 (519)
                      +..|.|||......        +.+..|...|...+|+|||++|+.++.+   ..|++||+.+++...            
T Consensus       183 ~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------------  242 (429)
T PRK01742        183 PYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------------  242 (429)
T ss_pred             eEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------------
Confidence            57899999864331        3456788899999999999999987654   369999987664210            


Q ss_pred             EEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEE-eCCCc
Q 010037          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADKT  410 (519)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sg-s~Dg~  410 (519)
                                                                      +..+.+|   ...++|+|+| .|+.+ +.++.
T Consensus       243 ------------------------------------------------l~~~~g~---~~~~~wSPDG~~La~~~~~~g~  271 (429)
T PRK01742        243 ------------------------------------------------VASFRGH---NGAPAFSPDGSRLAFASSKDGV  271 (429)
T ss_pred             ------------------------------------------------EecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence                                                            1112223   2357999999 66665 46777


Q ss_pred             EEEE--ECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCC--CcEEeeccCCCceEEEEEeeCCCEE
Q 010037          411 VRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGG  485 (519)
Q Consensus       411 V~lW--dl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~--~~~~~~~~~~~~V~~v~~spdg~~l  485 (519)
                      +.||  |+.++.......+...+...+|+| ++..|+..+ .+|..+||++..  +... ...+..  ..+.|+|||++|
T Consensus       272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l~~~~--~~~~~SpDG~~i  347 (429)
T PRK01742        272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGAS-LVGGRG--YSAQISADGKTL  347 (429)
T ss_pred             EEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeE-EecCCC--CCccCCCCCCEE
Confidence            6555  677776655555777788999999 888766555 578888887643  3322 223333  457899999999


Q ss_pred             EEEecCCeEEEEECCCCeeeec
Q 010037          486 IVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       486 ~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      +.++.++ +.+||+.+++...+
T Consensus       348 a~~~~~~-i~~~Dl~~g~~~~l  368 (429)
T PRK01742        348 VMINGDN-VVKQDLTSGSTEVL  368 (429)
T ss_pred             EEEcCCC-EEEEECCCCCeEEe
Confidence            8887765 55699988765433

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.34  E-value=2.6e-10  Score=107.03  Aligned_cols=229  Identities=14%  Similarity=0.219  Sum_probs=139.7

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCC--CEEEEEEccCCCEEEEE-eCC------CcEEEE
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG--SILTMKFSLDGQYLASG-GED------GTVRVW  311 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~--~I~~l~fspdg~~LaSg-s~D------g~I~iW  311 (519)
                      ++|+.|...+++|..+| .+||+.+.-+.....       +.+.+  .+.-|-|  -.++||-. |.+      ..|.||
T Consensus        11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r-------~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-------QFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             EEEccCCceEEEEecCc-eEEEecCchhhhhhh-------ccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence            78999999999998877 899998853332211       11222  2223333  23455443 332      479999


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc--CC
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH--SS  389 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h--~~  389 (519)
                      |=....++.++..... +..+.             +....+...      ....+.+|.-.   -..+.++.+..-  ..
T Consensus        81 DD~k~~~i~el~f~~~-I~~V~-------------l~r~riVvv------l~~~I~VytF~---~n~k~l~~~et~~NPk  137 (346)
T KOG2111|consen   81 DDLKERCIIELSFNSE-IKAVK-------------LRRDRIVVV------LENKIYVYTFP---DNPKLLHVIETRSNPK  137 (346)
T ss_pred             ecccCcEEEEEEeccc-eeeEE-------------EcCCeEEEE------ecCeEEEEEcC---CChhheeeeecccCCC
Confidence            9655555554443221 11111             111111000      01111111111   001223333221  22


Q ss_pred             CeeEEEEcCCC-eEEE-EeCCCcEEEEECCCCeE---EEEecCCCcEEEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCcE
Q 010037          390 EVLDLSWSKNG-FLLS-SSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQV  463 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~s-gs~Dg~V~lWdl~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~iwd~~~~~~  463 (519)
                      .+.+++-..+. +|+. |-.-|.|.|-|+...+.   .....|...|.|++.+- +|..+||+|..|+ |||||..++..
T Consensus       138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~  216 (346)
T KOG2111|consen  138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTL  216 (346)
T ss_pred             ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcE
Confidence            23333222222 4443 44568999999987665   44556999999999999 9999999999996 89999999988


Q ss_pred             Ee---eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          464 VD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       464 ~~---~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +.   .......|.+++|+|+..+|++++..|+++||.++...
T Consensus       217 l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  217 LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            74   22345679999999999999999999999999998643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.4e-10  Score=121.01  Aligned_cols=180  Identities=19%  Similarity=0.159  Sum_probs=126.1

Q ss_pred             CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEecccCeeeceeeccCCCCceEE
Q 010037          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (519)
Q Consensus       257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~  333 (519)
                      .+|.+||.....        .+.+..|...+.+.+|+|||+.|+..+.+   ..|.+|++.+++...             
T Consensus       184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-------------  242 (433)
T PRK04922        184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-------------  242 (433)
T ss_pred             EEEEEECCCCCC--------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------
Confidence            468888875322        12355677889999999999999987743   468899986654210             


Q ss_pred             EeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE-EEEeCCC--
Q 010037          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADK--  409 (519)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L-~sgs~Dg--  409 (519)
                                                                        +..+.+.....+|+|+| .| ++.+.++  
T Consensus       243 --------------------------------------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~  272 (433)
T PRK04922        243 --------------------------------------------------VASFRGINGAPSFSPDGRRLALTLSRDGNP  272 (433)
T ss_pred             --------------------------------------------------eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence                                                              11112233467899999 55 4555555  


Q ss_pred             cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEE
Q 010037          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI  486 (519)
Q Consensus       410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~  486 (519)
                      .|.+||+.+++......+.......+|+| ++++|+..+. +|  .|.++|+.+++...+.........++|+|||++|+
T Consensus       273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA  351 (433)
T ss_pred             eEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence            59999999988765555666667899999 8988887664 44  47777887776654444444456789999999998


Q ss_pred             EEecCC---eEEEEECCCCeeeecc
Q 010037          487 VGTMTG---NCRFYDIKGMQIFDLS  508 (519)
Q Consensus       487 sgs~dg---~v~iwdl~~~~l~~~~  508 (519)
                      ..+.++   .|.+||+.+++...+.
T Consensus       352 ~~~~~~~~~~I~v~d~~~g~~~~Lt  376 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLSTGSVRTLT  376 (433)
T ss_pred             EEECCCCceeEEEEECCCCCeEECC
Confidence            766543   5999999888766554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=4.7e-11  Score=119.60  Aligned_cols=113  Identities=12%  Similarity=0.235  Sum_probs=95.0

Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      ..|+++.|+.+| .++.|+.+|.|.|||+++.+++..-.|.  -+|..+.|.+.++.--+.......++|||-.+++...
T Consensus       229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~a  308 (703)
T KOG2321|consen  229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMA  308 (703)
T ss_pred             CcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCcee
Confidence            459999999999 9999999999999999999998887754  5789999988433333333445689999999999998


Q ss_pred             eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .......++.+|+-|++-++++|-.++.+..|=+..
T Consensus       309 siEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  309 SIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             eccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            888888899999999999999999998888876653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.32  E-value=8.6e-12  Score=113.89  Aligned_cols=151  Identities=18%  Similarity=0.278  Sum_probs=117.3

Q ss_pred             eEEeeecCCeEEEeeCCccccccccc---cccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037          249 ELTLGQRMRRVRVHPVKKQSRELSSL---YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       249 ~lasgs~dg~I~vw~~~~~~~~~~~~---~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      ++++|..+|.|.+||+..+.+.+.-.   ........|..+|.++.|.+.-..=++|+.+..+..|.+........+   
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~---  243 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI---  243 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc---
Confidence            56789999999999998764433211   122234679999999999886555678888889999988543210000   


Q ss_pred             CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEE
Q 010037          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS  404 (519)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~s  404 (519)
                                                                             -.+..-.+-.|..+..-|++ .|+|
T Consensus       244 -------------------------------------------------------~~e~~lknpGv~gvrIRpD~KIlAT  268 (323)
T KOG0322|consen  244 -------------------------------------------------------RKEITLKNPGVSGVRIRPDGKILAT  268 (323)
T ss_pred             -------------------------------------------------------cceEEecCCCccceEEccCCcEEee
Confidence                                                                   00111224457788888999 9999


Q ss_pred             EeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       405 gs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      ++.|+.||||..++..++.+++ |...|++++|+| +.+++|+++.|++|.+|++
T Consensus       269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            9999999999999999999998 999999999999 8899999999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=4.6e-10  Score=116.83  Aligned_cols=180  Identities=14%  Similarity=0.058  Sum_probs=124.5

Q ss_pred             CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---CCcEEEEecccCeeeceeeccCCCCceEE
Q 010037          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (519)
Q Consensus       257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  333 (519)
                      ..|.++|......        +.+..+...+...+|+|||+.|+..+.   +..|.+|++.+++...             
T Consensus       179 ~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-------------  237 (429)
T PRK03629        179 YELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-------------  237 (429)
T ss_pred             eeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------
Confidence            4688888764332        234456778999999999999886542   3468888886654210             


Q ss_pred             EeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEE-EeCCC--
Q 010037          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS-SSADK--  409 (519)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~s-gs~Dg--  409 (519)
                                                                     +..+.++   +...+|+|+| .|+. .+.++  
T Consensus       238 -----------------------------------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~  267 (429)
T PRK03629        238 -----------------------------------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSL  267 (429)
T ss_pred             -----------------------------------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCc
Confidence                                                           1111222   3457899999 5554 34454  


Q ss_pred             cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-C--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEE
Q 010037          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI  486 (519)
Q Consensus       410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~  486 (519)
                      .|.+||+.+++..+...+...+....|+| +++.|+..+.+ +  .|.++|+.+++...+..........+|+|||++|+
T Consensus       268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        268 NLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             EEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence            58999999988776666666788999999 89988776654 3  45555777776655544445567789999999988


Q ss_pred             EEecC---CeEEEEECCCCeeeecc
Q 010037          487 VGTMT---GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       487 sgs~d---g~v~iwdl~~~~l~~~~  508 (519)
                      ..+.+   ..|.+||+.+++...+.
T Consensus       347 ~~~~~~g~~~I~~~dl~~g~~~~Lt  371 (429)
T PRK03629        347 MVSSNGGQQHIAKQDLATGGVQVLT  371 (429)
T ss_pred             EEEccCCCceEEEEECCCCCeEEeC
Confidence            76653   35889999888765543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.31  E-value=2e-12  Score=126.34  Aligned_cols=190  Identities=15%  Similarity=0.205  Sum_probs=157.0

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~  319 (519)
                      .+.++.+|.+|+.|+..|.|..+|+......+       ++. -...|.++.|-.+.+++|.+ ....+.|||-..-+  
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-------Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtE--  202 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-------EIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTE--  202 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeee-------eee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcE--
Confidence            46788899999999999999999998654322       111 23568899999888888876 55689999853222  


Q ss_pred             ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (519)
                                                                                   ++-++. ...|..+.|-|.
T Consensus       203 -------------------------------------------------------------lHClk~-~~~v~rLeFLPy  220 (545)
T KOG1272|consen  203 -------------------------------------------------------------LHCLKR-HIRVARLEFLPY  220 (545)
T ss_pred             -------------------------------------------------------------Eeehhh-cCchhhhcccch
Confidence                                                                         122222 356888999999


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEE
Q 010037          400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAV  476 (519)
Q Consensus       400 ~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v  476 (519)
                      . +|++++..|.++.-|+.+|+.+..+. ..+.+..+.-+| -+..+-+|...|+|.+|.....+.+ .+..|.++|.+|
T Consensus       221 HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si  299 (545)
T KOG1272|consen  221 HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI  299 (545)
T ss_pred             hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence            9 88899999999999999999998886 677888899999 7888999999999999999988776 688999999999


Q ss_pred             EEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          477 CYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       477 ~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ++.++|+++||.+.|..|+|||++.-.
T Consensus       300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  300 AVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             EECCCCcEEeecccccceeEeeecccc
Confidence            999999999999999999999998643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=4.8e-10  Score=116.59  Aligned_cols=197  Identities=18%  Similarity=0.207  Sum_probs=133.0

Q ss_pred             ccceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCC--cEEEE
Q 010037          238 HGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TVRVW  311 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg--~I~iW  311 (519)
                      +...+|+|+|++|+.+...   ..|++|++..+...        .+..+.+.+.+++|+|||+.|+. .+.++  .|.+|
T Consensus       192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~  263 (417)
T TIGR02800       192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM  263 (417)
T ss_pred             eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence            4457899999999887644   47999998754321        12335566778999999987764 44444  47777


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      ++.++...                                                               .+..+....
T Consensus       264 d~~~~~~~---------------------------------------------------------------~l~~~~~~~  280 (417)
T TIGR02800       264 DLDGKQLT---------------------------------------------------------------RLTNGPGID  280 (417)
T ss_pred             ECCCCCEE---------------------------------------------------------------ECCCCCCCC
Confidence            77554321                                                               011122233


Q ss_pred             eEEEEcCCC-eEEEEeC-CC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---eEEEEEcCCCcEE
Q 010037          392 LDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQVV  464 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs~-Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~iwd~~~~~~~  464 (519)
                      ....|+|++ .|+..+. .+  .|.++|+.+++......+...+..+.|+| ++++++.++.++   .|.+||+.++...
T Consensus       281 ~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~~  359 (417)
T TIGR02800       281 TEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGER  359 (417)
T ss_pred             CCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence            456789998 6665543 33  58888888877655555667788899999 899998888776   8999999886654


Q ss_pred             eeccCCCceEEEEEeeCCCEEEEEecCC---eEEEEECCCCeeeec
Q 010037          465 DYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKGMQIFDL  507 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~~l~sgs~dg---~v~iwdl~~~~l~~~  507 (519)
                      .+... .......|+|||++|+..+.++   .+++.+..+.....+
T Consensus       360 ~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~  404 (417)
T TIGR02800       360 VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL  404 (417)
T ss_pred             EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence            43332 2345568999999988877754   466777666554444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.30  E-value=6.7e-11  Score=117.70  Aligned_cols=121  Identities=20%  Similarity=0.382  Sum_probs=99.4

Q ss_pred             cCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC--------------CeEEEEe--------------c-CCCcEEEEE
Q 010037          387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--------------DRCLRVF--------------S-HNNYVTSVA  435 (519)
Q Consensus       387 h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~--------------~~~~~~~--------------~-h~~~V~~v~  435 (519)
                      .+..|+|+.|-|.+  .++.+-.+|.+.+||...              +......              . -.+.|+.++
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence            45789999999976  888888999999997531              1111111              0 235788899


Q ss_pred             EeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~  508 (519)
                      |+| |+.+||+.+.||.+||+|..+.+++. ....-+...+++|+|||++|++|+.|--|.||.+..++++...
T Consensus       298 FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG  370 (636)
T KOG2394|consen  298 FSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG  370 (636)
T ss_pred             EcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence            999 99999999999999999999988873 5556678899999999999999999999999999999887653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.30  E-value=1.2e-09  Score=109.98  Aligned_cols=228  Identities=13%  Similarity=0.155  Sum_probs=133.5

Q ss_pred             EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeccc-Cee--eceeeccC
Q 010037          251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIE-HER--LDGFDVQD  326 (519)
Q Consensus       251 asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~I~iWd~~~-~~~--~~~~~~~~  326 (519)
                      ++...++.|.+|++.... .   +...+.+. +.+....+.++|++++|++++ .++.|.+|++.. +..  ...... .
T Consensus         6 ~~~~~~~~I~~~~~~~~g-~---l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~   79 (330)
T PRK11028          6 IASPESQQIHVWNLNHEG-A---LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-P   79 (330)
T ss_pred             EEcCCCCCEEEEEECCCC-c---eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-C
Confidence            444678999999995321 1   11222333 345677899999999887664 578999999963 322  111111 1


Q ss_pred             CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE-EE
Q 010037          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LS  404 (519)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L-~s  404 (519)
                      ..+..+.+.++.. .++....              .++.+.+|+........+.+..+. +.....+++++|++ ++ ++
T Consensus        80 ~~p~~i~~~~~g~-~l~v~~~--------------~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~  143 (330)
T PRK11028         80 GSPTHISTDHQGR-FLFSASY--------------NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVP  143 (330)
T ss_pred             CCceEEEECCCCC-EEEEEEc--------------CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEe
Confidence            1233333433322 1222211              123333333221111111222222 22346778899998 55 45


Q ss_pred             EeCCCcEEEEECCCCeEEE-------EecCCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEEcCC--CcE--Ee-ecc---
Q 010037          405 SSADKTVRLWQVGIDRCLR-------VFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR--CQV--VD-YTD---  468 (519)
Q Consensus       405 gs~Dg~V~lWdl~~~~~~~-------~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~--~~~--~~-~~~---  468 (519)
                      ...++.|.+||+.+...+.       ..........++|+| ++++++++.. +++|.+|++..  ++.  +. ...   
T Consensus       144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~  222 (330)
T PRK11028        144 CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA  222 (330)
T ss_pred             eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence            5567999999998643221       122344567899999 8999888776 89999999973  332  21 111   


Q ss_pred             ---CCCceEEEEEeeCCCEEEEEec-CCeEEEEECCC
Q 010037          469 ---IREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKG  501 (519)
Q Consensus       469 ---~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~  501 (519)
                         .......+.++|+|++|+++.. ++.|.+|++..
T Consensus       223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence               1122346889999999998854 78899999853

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.28  E-value=7.7e-11  Score=111.43  Aligned_cols=235  Identities=19%  Similarity=0.360  Sum_probs=151.2

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCC------------CCEEEEEEccCCC--EEE
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA  300 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~La  300 (519)
                      .+-+.++.|..+|.+||+|...|+|.++.-.+..+.  ......+++.|.            ..|+.+.|.++++  .++
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            456667899999999999999999999987654431  111122344454            4689999998664  566


Q ss_pred             EEeCCCcEEEEecccCeeec-eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          301 SGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       301 Sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                      ..+.|.+|++|.+....... ........         ....+..+        + ....+..+..+.          ..
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~---------~~~~~~~l--------r-~p~~~~~~~~ve----------a~  154 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEG---------PPGTITSL--------R-LPVEGRHDLEVE----------AS  154 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccC---------CCCcccee--------e-ceeeccccceee----------ee
Confidence            67789999999997654322 11111100         00000000        0 000001111111          12


Q ss_pred             ceeEe-eccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCC-eEEEEec--------CCCcEEEEEEeeCCCCEEEEEeC
Q 010037          380 PLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       380 ~~~~~-~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~-~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~  449 (519)
                      |.+.+ .+|.--|++|.++.++..+....|=.|.||++.-. +......        ...-|++..|+|...++|+-.+.
T Consensus       155 prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS  234 (433)
T KOG1354|consen  155 PRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS  234 (433)
T ss_pred             eeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence            22222 45888999999999995555567889999998743 2222221        23468999999988899999999


Q ss_pred             CCeEEEEEcCCCcEE-------e----------eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          450 DGKVRIWEVRRCQVV-------D----------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       450 Dg~V~iwd~~~~~~~-------~----------~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .|+|++-|++...+-       .          +...-..|..+.|+++|+++++-.. -+|++||+.
T Consensus       235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence            999999999953211       0          1122345888999999999988665 479999983

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.27  E-value=8.5e-10  Score=114.70  Aligned_cols=180  Identities=19%  Similarity=0.146  Sum_probs=127.2

Q ss_pred             CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEecccCeeeceeeccCCCCceE
Q 010037          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL  332 (519)
Q Consensus       256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~  332 (519)
                      ...|.+++.....        .+.+..+...+...+|+|||++|+.+..+   ..|++|++.+++..             
T Consensus       169 ~~~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-------------  227 (417)
T TIGR02800       169 RYELQVADYDGAN--------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-------------  227 (417)
T ss_pred             cceEEEEcCCCCC--------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-------------
Confidence            3457777764222        13355677789999999999999887654   47889998765421             


Q ss_pred             EEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-EEeCCC-
Q 010037          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK-  409 (519)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~-sgs~Dg-  409 (519)
                                                                        .+..+...+.+++|+|++ .|+ +.+.++ 
T Consensus       228 --------------------------------------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       228 --------------------------------------------------KVASFPGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             --------------------------------------------------EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence                                                              011123345568899998 554 444444 


Q ss_pred             -cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEE
Q 010037          410 -TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG  485 (519)
Q Consensus       410 -~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l  485 (519)
                       .|.+||+.++.......+........|+| +++.|+..+. ++  .|.++|+.+++...+......+..+.|+|+|++|
T Consensus       258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i  336 (417)
T TIGR02800       258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLI  336 (417)
T ss_pred             ccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEE
Confidence             58999999887655555555566789999 8888776654 33  6888898888766665566677889999999999


Q ss_pred             EEEecCC---eEEEEECCCCeeeec
Q 010037          486 IVGTMTG---NCRFYDIKGMQIFDL  507 (519)
Q Consensus       486 ~sgs~dg---~v~iwdl~~~~l~~~  507 (519)
                      +.++.++   .|.+||+.++....+
T Consensus       337 ~~~~~~~~~~~i~~~d~~~~~~~~l  361 (417)
T TIGR02800       337 AFVHREGGGFNIAVMDLDGGGERVL  361 (417)
T ss_pred             EEEEccCCceEEEEEeCCCCCeEEc
Confidence            9888776   799999987655443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=1.7e-10  Score=123.05  Aligned_cols=197  Identities=18%  Similarity=0.271  Sum_probs=150.2

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeE
Q 010037          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (519)
Q Consensus       287 I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  366 (519)
                      |....+..+...++.+..+..+.+||...+.....+......   .         ++....-...........++..+.+
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~---~---------l~~~~~~g~s~~~~~i~~gsv~~~i  157 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC---T---------LYSSLIIGDSAEELYIASGSVFGEI  157 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceE---E---------EEeEEEEeccCcEEEEEeccccccE
Confidence            334555667778888888999999999877665554432221   1         1111111122234445566777788


Q ss_pred             EEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--EecCCCcEEEEEEeeCCCCE
Q 010037          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNY  443 (519)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~--~~~h~~~V~~v~fsp~d~~~  443 (519)
                      ++|.+.   ...++. .+.||.+.|..+.|+.+| ++++.|+|.++|+|++.+.+.+.  .|.|+..|..++|.| +  .
T Consensus       158 ivW~~~---~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~  230 (967)
T KOG0974|consen  158 IVWKPH---EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--R  230 (967)
T ss_pred             EEEecc---ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--e
Confidence            888877   333444 689999999999999999 99999999999999999988775  567999999999998 4  9


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEeeccC-CCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          444 FISGSIDGKVRIWEVRRCQVVDYTDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      +++++.|-+.++|+.+..+.-.+..| ...|..++..++...+++++.||.+++|++.+.
T Consensus       231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            99999999999997776555555555 456899999999999999999999999998754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=1.7e-10  Score=115.69  Aligned_cols=222  Identities=18%  Similarity=0.215  Sum_probs=140.8

Q ss_pred             cCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEe--------eccCCce
Q 010037          282 AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI--------DVDKEKI  352 (519)
Q Consensus       282 ~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  352 (519)
                      .|...-+.|..+|||+|+ |||..--.|++||+....+...-......+....+..+ ...++.+        ....+..
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD-~SK~v~L~~DR~IefHak~G~h  127 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDD-YSKSVFLQNDRTIEFHAKYGRH  127 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccc-hhhheEeecCceeeehhhcCee
Confidence            467788999999999976 66778889999999776554333222222222211111 1111111        1111111


Q ss_pred             eeeeeec---------cCCCeeEEEeCCcccccc---ccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC
Q 010037          353 DKTKSLR---------KSSDLTCVVLPPKVFRLL---EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID  419 (519)
Q Consensus       353 ~~~~~~~---------~s~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~  419 (519)
                      ..+..-.         .+.+.-+......++++.   +..+..+....+.++++..++.. +|++|+.+|.|-.||.++.
T Consensus       128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence            1111100         111111111112222221   23345556667899999999977 9999999999999999988


Q ss_pred             eEEEEec-------CCC-----cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC--CceEEEEEeeCCCEE
Q 010037          420 RCLRVFS-------HNN-----YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKGG  485 (519)
Q Consensus       420 ~~~~~~~-------h~~-----~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~--~~V~~v~~spdg~~l  485 (519)
                      ..+.++.       |.+     .|+++.|+. +|-.+++|+.+|.|.|||+++.+++....|.  -+|..+.|.+.+..-
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence            7777664       333     399999997 7999999999999999999999988666654  568889998764332


Q ss_pred             -EEEecCCeEEEEECCCCeee
Q 010037          486 -IVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       486 -~sgs~dg~v~iwdl~~~~l~  505 (519)
                       ++......++|||-.+|+.+
T Consensus       287 ~v~S~Dk~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  287 KVVSMDKRILKIWDECTGKPM  307 (703)
T ss_pred             eEEecchHHhhhcccccCCce
Confidence             22333456999999888754

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.26  E-value=3.6e-11  Score=119.36  Aligned_cols=212  Identities=12%  Similarity=0.216  Sum_probs=137.1

Q ss_pred             cCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC
Q 010037          282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (519)
Q Consensus       282 ~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  361 (519)
                      .|...|.|+.|+.+...+.++++ ..+.+|.-.+.........++.......+       +......+++- .-..+..+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dD-h~~~~~~~~~~~s~~~~~~p~df~pt~~h-------~~~rs~~~g~~-~d~~~i~s   82 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDD-HQIFKWSDVSRDSVEVAKLPDDFVPTDMH-------LGGRSSGGGKG-SDTLLICS   82 (737)
T ss_pred             ccceeEEeecccccceEEEeccC-ceEEEeecccchhhhhhhCCcccCCcccc-------ccccccCCCCC-cceEEEEc
Confidence            36667789999988776666654 45555544333333333333322211111       00001111111 11112233


Q ss_pred             CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC
Q 010037          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV  439 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~  439 (519)
                      .++...+.+..     ++.-....+|.+.|.+-.|+|+| -|++++.||.|++|. ++|-...++. ....|+|++|.|.
T Consensus        83 ~DGkf~il~k~-----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~  156 (737)
T KOG1524|consen   83 NDGRFVILNKS-----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPN  156 (737)
T ss_pred             CCceEEEeccc-----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCC
Confidence            34444333221     23344567899999999999999 999999999999997 4454444443 6778999999995


Q ss_pred             CCCEEEEEeCCCeEEEEEcCC-CcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecccc
Q 010037          440 DDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTT  510 (519)
Q Consensus       440 d~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~  510 (519)
                      ..+.+.+.  .+.+.|=-+.. .++++|..|.+.|.++.|+|..+.+++|+.|-..+|||..+..++.-...
T Consensus       157 S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~  226 (737)
T KOG1524|consen  157 SNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAE  226 (737)
T ss_pred             CCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChh
Confidence            55555544  35666666654 56779999999999999999999999999999999999988777654433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=8.7e-10  Score=114.77  Aligned_cols=180  Identities=19%  Similarity=0.175  Sum_probs=118.4

Q ss_pred             CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEecccCeeeceeeccCCCCceEE
Q 010037          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (519)
Q Consensus       257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~  333 (519)
                      ..|.++|.....        .+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...             
T Consensus       176 ~~L~~~D~dG~~--------~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------  234 (427)
T PRK02889        176 YQLQISDADGQN--------AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------  234 (427)
T ss_pred             cEEEEECCCCCC--------ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------
Confidence            457777764322        12345677889999999999999887643   359999987765311             


Q ss_pred             EeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-EEeCCCcE
Q 010037          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTV  411 (519)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~-sgs~Dg~V  411 (519)
                                                                        +....+.+...+|+|+| .|+ +.+.++..
T Consensus       235 --------------------------------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  264 (427)
T PRK02889        235 --------------------------------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNS  264 (427)
T ss_pred             --------------------------------------------------eecCCCCccceEECCCCCEEEEEEccCCCc
Confidence                                                              11112334578999999 554 66778876


Q ss_pred             EEEE--CCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEE--cCCCcEEeeccCCCceEEEEEeeCCCEEE
Q 010037          412 RLWQ--VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWE--VRRCQVVDYTDIREIVSAVCYCPDGKGGI  486 (519)
Q Consensus       412 ~lWd--l~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd--~~~~~~~~~~~~~~~V~~v~~spdg~~l~  486 (519)
                      .||.  +.++...+...+...+....|+| +++.|+..+. +|...||.  +.++...............+|+|||++|+
T Consensus       265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        265 QIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             eEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence            6665  55555433333555667889999 8888776554 45556665  45555443332333445689999999998


Q ss_pred             EEecCC---eEEEEECCCCeeeecc
Q 010037          487 VGTMTG---NCRFYDIKGMQIFDLS  508 (519)
Q Consensus       487 sgs~dg---~v~iwdl~~~~l~~~~  508 (519)
                      ..+.++   .|.+||+.+++...+.
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~~~~lt  368 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQVTALT  368 (427)
T ss_pred             EEEccCCcEEEEEEECCCCCeEEcc
Confidence            877654   5999999888765553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.26  E-value=1.1e-09  Score=103.22  Aligned_cols=261  Identities=14%  Similarity=0.115  Sum_probs=164.1

Q ss_pred             ecccceeecCCCCeEEe-eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEec
Q 010037          236 DRHGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKV  313 (519)
Q Consensus       236 ~~~~~~~~sp~g~~las-gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~I~iWd~  313 (519)
                      +.+.-+.|+-+..++++ ...++.|.+|++.......       .+.....++..++|||||+ .|.+..-|-.|.+|.+
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c-------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL  121 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC-------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSL  121 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEE-------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEe
Confidence            33444566666666554 6778899999987544322       2455677899999999995 5566667899999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCce--------------------eeeeeeccCCCeeEEEeCCcc
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI--------------------DKTKSLRKSSDLTCVVLPPKV  373 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~s~~~~~~~~~~~~  373 (519)
                      .+.+.. -++.+......+.|.++..-..+....+-...                    +....-..-.+..+.+|+.-.
T Consensus       122 ~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L  200 (447)
T KOG4497|consen  122 NTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL  200 (447)
T ss_pred             ccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh
Confidence            876643 22333334455555554432222211111000                    000001111122233333221


Q ss_pred             ccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE-----------------------------
Q 010037          374 FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR-----------------------------  423 (519)
Q Consensus       374 ~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~-----------------------------  423 (519)
                      -    ..+. ...-.-.+..++|+|.+ +|+.|+.|+.+||.+--+-+...                             
T Consensus       201 e----ykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~  275 (447)
T KOG4497|consen  201 E----YKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH  275 (447)
T ss_pred             h----heee-eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence            0    0011 11123578999999977 99999999999986522111100                             


Q ss_pred             -------------------------------Eec-------CCCcEEEEEEeeCCCCEEEEEeC--CCeEEEEEcCCCcE
Q 010037          424 -------------------------------VFS-------HNNYVTSVAFNPVDDNYFISGSI--DGKVRIWEVRRCQV  463 (519)
Q Consensus       424 -------------------------------~~~-------h~~~V~~v~fsp~d~~~l~sgs~--Dg~V~iwd~~~~~~  463 (519)
                                                     .++       ..-.+--++|++ |..|+++-..  -..+-+||++..++
T Consensus       276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l  354 (447)
T KOG4497|consen  276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKL  354 (447)
T ss_pred             ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhh
Confidence                                           000       112356689999 8888888543  35799999999888


Q ss_pred             EeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecccc
Q 010037          464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTT  510 (519)
Q Consensus       464 ~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~  510 (519)
                      ........+|.+..|+|....|+++.....+++|...+...+..+..
T Consensus       355 ~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~  401 (447)
T KOG4497|consen  355 HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK  401 (447)
T ss_pred             hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC
Confidence            87777778999999999999999999888999999998777666543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.25  E-value=2.4e-09  Score=108.58  Aligned_cols=245  Identities=15%  Similarity=0.142  Sum_probs=136.4

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEecccC
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEH  316 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~I~iWd~~~~  316 (519)
                      +..+.|+|||+++++.+.||.|.++|+...+.       ..++.... ....+++++||++++++. ..+.+.++|..+.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-------v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-------VATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-------EEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccE-------EEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence            33468999999999999999999999986552       22333333 357899999999998775 5899999999999


Q ss_pred             eeeceeeccCCCC-----ceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          317 ERLDGFDVQDTDP-----SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       317 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      +.++.+.......     ........+....+.+....           .  +.+.+.+....   ..............
T Consensus       111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----------~--~~I~vVdy~d~---~~~~~~~i~~g~~~  174 (369)
T PF02239_consen  111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----------T--GEIWVVDYSDP---KNLKVTTIKVGRFP  174 (369)
T ss_dssp             -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----------T--TEEEEEETTTS---SCEEEEEEE--TTE
T ss_pred             cceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----------C--CeEEEEEeccc---cccceeeecccccc
Confidence            8887775432211     11111111212212111111           1  11111111110   00111122233455


Q ss_pred             eEEEEcCCC-eEE-EEeCCCcEEEEECCCCeEEEEec--------------CC---------------------------
Q 010037          392 LDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFS--------------HN---------------------------  428 (519)
Q Consensus       392 ~~l~~sp~~-~L~-sgs~Dg~V~lWdl~~~~~~~~~~--------------h~---------------------------  428 (519)
                      .+..|+|++ +++ +...+..|-++|..+++.+..+.              |.                           
T Consensus       175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~  254 (369)
T PF02239_consen  175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH  254 (369)
T ss_dssp             EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred             cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence            677888887 443 34556677777777665544321              11                           


Q ss_pred             --------------CcEEEEEEeeCCCCEEEEE----eCCCeEEEEEcCCCcEEeeccC--CCceEEEEEeeCCCEEEEE
Q 010037          429 --------------NYVTSVAFNPVDDNYFISG----SIDGKVRIWEVRRCQVVDYTDI--REIVSAVCYCPDGKGGIVG  488 (519)
Q Consensus       429 --------------~~V~~v~fsp~d~~~l~sg----s~Dg~V~iwd~~~~~~~~~~~~--~~~V~~v~~spdg~~l~sg  488 (519)
                                    +.-.-+..+| +++++.+.    ...++|.++|.++.+++.....  ...+..+.|++||+.+.++
T Consensus       255 d~~~wkvv~~I~~~G~glFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS  333 (369)
T PF02239_consen  255 DDYAWKVVKTIPTQGGGLFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVS  333 (369)
T ss_dssp             TTTBTSEEEEEE-SSSS--EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred             hhhcCeEEEEEECCCCcceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence                          1113355678 88888887    4457999999999987754332  2348999999999988776


Q ss_pred             ecCC--eEEEEECCCCeeeec
Q 010037          489 TMTG--NCRFYDIKGMQIFDL  507 (519)
Q Consensus       489 s~dg--~v~iwdl~~~~l~~~  507 (519)
                      ..++  .|.+||..+.++...
T Consensus       334 ~~~~~~~i~v~D~~Tl~~~~~  354 (369)
T PF02239_consen  334 VWDGNGAIVVYDAKTLKEKKR  354 (369)
T ss_dssp             EE--TTEEEEEETTTTEEEEE
T ss_pred             EecCCCEEEEEECCCcEEEEE
Confidence            6543  699999999987653

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=1.1e-10  Score=115.05  Aligned_cols=267  Identities=17%  Similarity=0.220  Sum_probs=170.2

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCC
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDG  306 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg  306 (519)
                      ..+..|...++.+.|+..|..|++|+.|.+|.+|++......+.      -..+|...|...+|-|  +.+-|++++.||
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS------FESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc------cccccccchhhhhccCCCCCcCceeccccC
Confidence            34666778888899999999999999999999999987665443      1357888888888888  345788888999


Q ss_pred             cEEEEecccCeee---ceeeccCCCCceEEEeecCCCCeEEeeccC---------Cce--------------eeee----
Q 010037          307 TVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDK---------EKI--------------DKTK----  356 (519)
Q Consensus       307 ~I~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--------------~~~~----  356 (519)
                      .|++=.+......   ..+..+...+..++..+.....+....-+.         ...              ..+.    
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~  289 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV  289 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence            9888776433221   122233333333443333332222211110         000              0000    


Q ss_pred             -------eeccCCCeeEEEeCCcccccc--ccceeEee------ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC--
Q 010037          357 -------SLRKSSDLTCVVLPPKVFRLL--EKPLHEFQ------GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--  418 (519)
Q Consensus       357 -------~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~------~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~--  418 (519)
                             ...++.+-...+++.+.....  ..++..+.      .....|+|++|+.++ -|+++-.|-.|+++.-..  
T Consensus       290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~  369 (559)
T KOG1334|consen  290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD  369 (559)
T ss_pred             CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence                   011111122222222221111  01122222      234579999999877 888888898999995332  


Q ss_pred             C----------eEEEE-ec-C--CCcEEEEEE-eeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCC
Q 010037          419 D----------RCLRV-FS-H--NNYVTSVAF-NPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDG  482 (519)
Q Consensus       419 ~----------~~~~~-~~-h--~~~V~~v~f-sp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg  482 (519)
                      +          ..++. ++ |  ...|..+.| -| ...|+++||.-|.|.||+-.+++++. +.+-...|+|+.=+|--
T Consensus       370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~  448 (559)
T KOG1334|consen  370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL  448 (559)
T ss_pred             CCCCCCCcchhhccchhhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence            2          11222 33 3  345777876 45 78999999999999999999999985 44445589999999999


Q ss_pred             CEEEEEecCCeEEEEECCCC
Q 010037          483 KGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       483 ~~l~sgs~dg~v~iwdl~~~  502 (519)
                      ..||+++.|..|+||...+.
T Consensus       449 PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  449 PVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             chhhccCCccceeeecCCcc
Confidence            99999999999999988543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.20  E-value=1.5e-11  Score=120.23  Aligned_cols=188  Identities=15%  Similarity=0.213  Sum_probs=146.5

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      ..|..+.|-.+..++|++. ...++|||-....     +.+   ++.| ..|..|.|-|.--+|++++..|.++.-|+.+
T Consensus       171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-----lHC---lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~  240 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-----LHC---LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVST  240 (545)
T ss_pred             hhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-----Eee---hhhc-CchhhhcccchhheeeecccCCceEEEeech
Confidence            4555678888888888874 5678999866322     111   2223 4688999999988999999999999999998


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      |+.+..+                                                              ..-.+.+..|+
T Consensus       241 GklVa~~--------------------------------------------------------------~t~~G~~~vm~  258 (545)
T KOG1272|consen  241 GKLVASI--------------------------------------------------------------RTGAGRTDVMK  258 (545)
T ss_pred             hhhhHHH--------------------------------------------------------------HccCCccchhh
Confidence            8865443                                                              22345677778


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCce
Q 010037          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV  473 (519)
Q Consensus       396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V  473 (519)
                      -+|-+ .+-+|...|+|.+|.-...+++..+ .|.++|.+|++.| +|+|++|.+.|..|+|||+++...+.......+.
T Consensus       259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a  337 (545)
T KOG1272|consen  259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA  337 (545)
T ss_pred             cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCCc
Confidence            88877 8899999999999999988877554 5999999999999 9999999999999999999987755433335677


Q ss_pred             EEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          474 SAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       474 ~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      ..+++|.-|  +++.+....|.||.
T Consensus       338 ~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  338 SNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             ccccccccc--ceeeecCCeeeeeh
Confidence            888898876  34445556899994

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=3.7e-09  Score=110.41  Aligned_cols=199  Identities=22%  Similarity=0.219  Sum_probs=126.6

Q ss_pred             ecccceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCC--cEE
Q 010037          236 DRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG--TVR  309 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg--~I~  309 (519)
                      ..+....|+|+|+.|+..+..   ..|.+|++..+....        +....+.+....|+|||+.|+ +...+|  .|.
T Consensus       199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            344567899999999876543   368888887543221        122233455689999999887 444555  466


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +||+.++...                                                               .+..+..
T Consensus       271 ~~d~~~~~~~---------------------------------------------------------------~lt~~~~  287 (430)
T PRK00178        271 VMDLASRQLS---------------------------------------------------------------RVTNHPA  287 (430)
T ss_pred             EEECCCCCeE---------------------------------------------------------------EcccCCC
Confidence            6677654321                                                               1111223


Q ss_pred             CeeEEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-C--eEEEEEcCCCc
Q 010037          390 EVLDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQ  462 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs-~Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~iwd~~~~~  462 (519)
                      ......|+|+| .|+..+ .++  .|.++++.+++...............|+| ++++++..+.+ +  .|.+||+.+++
T Consensus       288 ~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        288 IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCCC
Confidence            34556899998 555444 333  57778888877554433333445678999 88888776643 3  58899999887


Q ss_pred             EEeeccCCCceEEEEEeeCCCEEEEEecC---CeEEEEECCCCeeeec
Q 010037          463 VVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKGMQIFDL  507 (519)
Q Consensus       463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~d---g~v~iwdl~~~~l~~~  507 (519)
                      ...+... .......|+|||+.|+..+.+   ..+.++++.++....+
T Consensus       367 ~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l  413 (430)
T PRK00178        367 VRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL  413 (430)
T ss_pred             EEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence            6544332 223356899999998877654   3477888876555444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=3.3e-10  Score=109.00  Aligned_cols=179  Identities=12%  Similarity=0.202  Sum_probs=138.0

Q ss_pred             eecCCCC-eEEeeecC--CeEEEeeCCccccccccccccceeecCCC--CEEEEEEccC--CCEEEEEeCCCcEEEEecc
Q 010037          242 TLKPGDH-ELTLGQRM--RRVRVHPVKKQSRELSSLYTGQEFLAHEG--SILTMKFSLD--GQYLASGGEDGTVRVWKVI  314 (519)
Q Consensus       242 ~~sp~g~-~lasgs~d--g~I~vw~~~~~~~~~~~~~~~~~l~~H~~--~I~~l~fspd--g~~LaSgs~Dg~I~iWd~~  314 (519)
                      .-+|... .+|+|+..  ..++||++....+.++.........+-.-  .++++.|-+.  ...||+++.-+.||+||..
T Consensus       155 r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~  234 (412)
T KOG3881|consen  155 RQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR  234 (412)
T ss_pred             ccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCc
Confidence            3344444 45568888  88999999877544443322222222223  3567889886  7899999999999999987


Q ss_pred             cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (519)
                      .+.                                                             .|+..+.--..+|+++
T Consensus       235 ~qR-------------------------------------------------------------RPV~~fd~~E~~is~~  253 (412)
T KOG3881|consen  235 HQR-------------------------------------------------------------RPVAQFDFLENPISST  253 (412)
T ss_pred             ccC-------------------------------------------------------------cceeEeccccCcceee
Confidence            554                                                             2334444456789999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCC
Q 010037          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE  471 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~  471 (519)
                      ...|.+ .+++|..-+.+..+|++.++.+.. +. ..+.|++|..+| ...++++++.|..|||+|+.+.+++.......
T Consensus       254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs  332 (412)
T KOG3881|consen  254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKS  332 (412)
T ss_pred             eecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence            999999 999999999999999999998877 44 788999999999 88999999999999999999988887666677


Q ss_pred             ceEEEEEeeCC
Q 010037          472 IVSAVCYCPDG  482 (519)
Q Consensus       472 ~V~~v~~spdg  482 (519)
                      .++.|-+.++-
T Consensus       333 ~lt~il~~~~~  343 (412)
T KOG3881|consen  333 RLTFILLRDDV  343 (412)
T ss_pred             cccEEEecCCc
Confidence            78888776643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.20  E-value=1.9e-09  Score=102.26  Aligned_cols=225  Identities=19%  Similarity=0.317  Sum_probs=143.2

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .++++.+.++....-|...-+++.+.|.+++||-..+....-..+     ......++.++.+.++...|+.|-.+|++.
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-----hhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            467788888888888888899999999999999765433211111     123457889999999988999998899988


Q ss_pred             EEeccc----CeeeceeeccCCCCceEEEeecCC--------CCeE-EeeccCCceeeeeeeccC----CCeeEEEeCCc
Q 010037          310 VWKVIE----HERLDGFDVQDTDPSCLYFTINHL--------SQLI-PIDVDKEKIDKTKSLRKS----SDLTCVVLPPK  372 (519)
Q Consensus       310 iWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~  372 (519)
                      -+.+..    ....+.+..+...+..+.+.....        ..+. ...-...+..........    -+..+.....+
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~  173 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH  173 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence            876532    222222222332222222221111        0000 000011111111111100    01111111111


Q ss_pred             cccc--------cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEecCCCcEEEEEEeeCCC
Q 010037          373 VFRL--------LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFSHNNYVTSVAFNPVDD  441 (519)
Q Consensus       373 ~~~~--------~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~--~~~~~~~h~~~V~~v~fsp~d~  441 (519)
                      .+.+        .-.++.++.+|.+.+.+++|.|.. .|.+|..|..|.+||+..+  .....+.|...|..++.-+ .-
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t  252 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HT  252 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hh
Confidence            1111        235678899999999999999987 9999999999999998654  4445556999999999988 78


Q ss_pred             CEEEEEeCCCeEEEEEcCC
Q 010037          442 NYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       442 ~~l~sgs~Dg~V~iwd~~~  460 (519)
                      ..+++++.||.|.+||.+.
T Consensus       253 ~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  253 RQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eeeeeccCCCeEEEEeccc
Confidence            8999999999999999764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=6e-11  Score=118.08  Aligned_cols=214  Identities=14%  Similarity=0.207  Sum_probs=153.8

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~  307 (519)
                      +..+++|...+..++--.+.+-++++++|++|++|.++....+..+..+.-++++|+.+|..+.|-.+.++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            345677778887766556777888999999999999987766666666777889999999999999999998876  889


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |++||.--+..+..+.-..                                                         -.+.
T Consensus       806 iHlWDPFigr~Laq~~dap---------------------------------------------------------k~~a  828 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAP---------------------------------------------------------KEGA  828 (1034)
T ss_pred             ceeecccccchhHhhhcCc---------------------------------------------------------ccCC
Confidence            9999986665433221100                                                         0112


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      .+.|.|+.--... .++.++...+|+++|.+.......++      .+..+.+++..| .|+.++++-..|.|.+.|.++
T Consensus       829 ~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  829 GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             CceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC
Confidence            2334444321112 44555889999999999987766654      346789999999 999999999999999999999


Q ss_pred             CcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEE-EECCCC
Q 010037          461 CQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRF-YDIKGM  502 (519)
Q Consensus       461 ~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~i-wdl~~~  502 (519)
                      ++++. |....-....++- |..+.|+....|.++.+ |...++
T Consensus       908 G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  908 GKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             CceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC
Confidence            99884 5554444444332 55556666666777777 765544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=5.8e-09  Score=109.08  Aligned_cols=199  Identities=20%  Similarity=0.203  Sum_probs=121.8

Q ss_pred             ecccceeecCCCCeEEeeecC-C--eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCCc--EE
Q 010037          236 DRHGSATLKPGDHELTLGQRM-R--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGT--VR  309 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~d-g--~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg~--I~  309 (519)
                      ..+....|+|||+.|+..+.. +  .|.+|++..+....        +....+......|+|||+.|+. .+.+|.  |.
T Consensus       218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            344567999999999876543 3  58888876543211        1111223346799999997765 556665  55


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +||+.+++.                                                               ..+..+..
T Consensus       290 ~~dl~tg~~---------------------------------------------------------------~~lt~~~~  306 (448)
T PRK04792        290 VVDIATKAL---------------------------------------------------------------TRITRHRA  306 (448)
T ss_pred             EEECCCCCe---------------------------------------------------------------EECccCCC
Confidence            556554431                                                               11122233


Q ss_pred             CeeEEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCc
Q 010037          390 EVLDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQ  462 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs-~Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~  462 (519)
                      .....+|+|++ .|+..+ .++  .|.++|+.+++..............+|+| ++++|+..+. ++  .|.++|+.+++
T Consensus       307 ~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        307 IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCCCC
Confidence            45567899999 555444 333  46677887777654433333445679999 8888876654 34  46667888877


Q ss_pred             EEeeccCCCceEEEEEeeCCCEEEEEecC-C--eEEEEECCCCeeeec
Q 010037          463 VVDYTDIREIVSAVCYCPDGKGGIVGTMT-G--NCRFYDIKGMQIFDL  507 (519)
Q Consensus       463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~d-g--~v~iwdl~~~~l~~~  507 (519)
                      ...+.... ......|+|||+.|+..+.+ |  .++++++.+.....+
T Consensus       386 ~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l  432 (448)
T PRK04792        386 MQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL  432 (448)
T ss_pred             eEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence            65443321 22345899999988876654 3  377778765544444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=3.5e-10  Score=120.78  Aligned_cols=149  Identities=23%  Similarity=0.409  Sum_probs=124.9

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~  320 (519)
                      +.++++.-++++|+.-+.|.+|+....++..       .+.+|.+.|..+.|+.||++++++++|.++|+|++.+.+...
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~  211 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG  211 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcc-------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence            4578888899999999999999987333221       478999999999999999999999999999999998876321


Q ss_pred             eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC
Q 010037          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (519)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  400 (519)
                                                                                   ...-+|+..|..+.+.|+ 
T Consensus       212 -------------------------------------------------------------~~~fgHsaRvw~~~~~~n-  229 (967)
T KOG0974|consen  212 -------------------------------------------------------------CTGFGHSARVWACCFLPN-  229 (967)
T ss_pred             -------------------------------------------------------------cccccccceeEEEEeccc-
Confidence                                                                         123579999999999999 


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEec-C-CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFS-H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~-h-~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      +++|++.|.+.++|+.+..+.. ++. | ...+..++..+ +...++|++.|+.+++|++..
T Consensus       230 ~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  230 RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence            9999999999999976654443 554 4 45789999999 888999999999999999865

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.16  E-value=7.9e-10  Score=104.08  Aligned_cols=190  Identities=18%  Similarity=0.262  Sum_probs=131.7

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEecccCeee
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEHERL  319 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg~I~iWd~~~~~~~  319 (519)
                      ..|+|+|+++|+.+.. ++.|.|...-.       ..|.+.. -+.|.-+.|..|.-+++. ...|+.|.+|++...+-.
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq-------~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQ-------LHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhh-------HHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            4799999999999876 78888876322       2222221 356778899988876554 467889999998655421


Q ss_pred             ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (519)
                                                                                    ..++....++..++|+|+
T Consensus        85 --------------------------------------------------------------ckIdeg~agls~~~WSPd  102 (447)
T KOG4497|consen   85 --------------------------------------------------------------CKIDEGQAGLSSISWSPD  102 (447)
T ss_pred             --------------------------------------------------------------EEeccCCCcceeeeECCC
Confidence                                                                          223445677889999999


Q ss_pred             C--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--------------------------
Q 010037          400 G--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG--------------------------  451 (519)
Q Consensus       400 ~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg--------------------------  451 (519)
                      |  .|.+...|-.|.+|.+.+.++...--....+..++|+| ++++.+..+.-.                          
T Consensus       103 grhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl  181 (447)
T KOG4497|consen  103 GRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL  181 (447)
T ss_pred             cceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence            9  67788889999999999988766554455678899999 888887765421                          


Q ss_pred             ----------eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          452 ----------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       452 ----------~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                                .+.+||---.-.+-.....-.+..++|+|.+++|++|+.|+.+||.+--+-
T Consensus       182 tgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW  242 (447)
T KOG4497|consen  182 TGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW  242 (447)
T ss_pred             cCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence                      122222110001101112245788999999999999999999998775443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=3e-10  Score=111.95  Aligned_cols=209  Identities=20%  Similarity=0.241  Sum_probs=144.0

Q ss_pred             ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccC-CCCceEEEeecCCCCeEEeeccCCceee
Q 010037          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDK  354 (519)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (519)
                      ....|..|.+.|..|.|+..|..|+||+.|..|.+||+..+.....+.... ..+....|.+......+...        
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~--------  205 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS--------  205 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec--------
Confidence            334578899999999999999999999999999999998887655543322 22222223333222211111        


Q ss_pred             eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec----CC
Q 010037          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HN  428 (519)
Q Consensus       355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~  428 (519)
                            +.++.+.+-........ +....+..|.+.|.-++.-|..  .|++++.|+.|.-.|++++.+...+.    +.
T Consensus       206 ------s~dgqvr~s~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~  278 (559)
T KOG1334|consen  206 ------SRDGQVRVSEILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE  278 (559)
T ss_pred             ------cccCceeeeeeccccce-ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence                  11222211111100000 1123456799999999999988  99999999999999999886655542    33


Q ss_pred             C---cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE------E-eec------cCCCceEEEEEeeCCCEEEEEecCC
Q 010037          429 N---YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV------V-DYT------DIREIVSAVCYCPDGKGGIVGTMTG  492 (519)
Q Consensus       429 ~---~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~------~-~~~------~~~~~V~~v~~spdg~~l~sgs~dg  492 (519)
                      .   ...+|+.+|.+.++|++|+.|..+++||.+.-..      + ++.      ...-.|++++|+.++.-|+++-.|-
T Consensus       279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe  358 (559)
T KOG1334|consen  279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE  358 (559)
T ss_pred             ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeeccc
Confidence            3   6789999997788999999999999999876321      1 111      2344699999999888888888888


Q ss_pred             eEEEEEC
Q 010037          493 NCRFYDI  499 (519)
Q Consensus       493 ~v~iwdl  499 (519)
                      .|+++.-
T Consensus       359 ~IYLF~~  365 (559)
T KOG1334|consen  359 DIYLFNK  365 (559)
T ss_pred             ceEEecc
Confidence            9999943

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=8.4e-09  Score=107.12  Aligned_cols=118  Identities=13%  Similarity=0.133  Sum_probs=82.3

Q ss_pred             CeeEEEEcCCC-eEEEEe-CCCcEEEEE--CCC-CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC---CeEEEEEcCC
Q 010037          390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQ--VGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRR  460 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs-~Dg~V~lWd--l~~-~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~iwd~~~  460 (519)
                      .....+|+|+| .|+..+ .++...||.  +.. +.....+ .+...+....|+| +++.|+..+.+   ..|.+||+.+
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence            34567999999 666554 466555554  432 2223333 3455678899999 89888766543   4799999999


Q ss_pred             CcEEeeccCCCceEEEEEeeCCCEEEEEec---CCeEEEEECCCCeeeecc
Q 010037          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~---dg~v~iwdl~~~~l~~~~  508 (519)
                      ++...+......+....|+|||+.|+....   ...|+++|+.+++...+.
T Consensus       361 g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        361 GRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            987766554456778999999998876443   346889999888766554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=6.3e-09  Score=99.32  Aligned_cols=205  Identities=17%  Similarity=0.235  Sum_probs=134.9

Q ss_pred             ecccceeecCCC-CeEEeeecCCeEEEeeCCccccccc-----ccccccee--ecCCCCEEEEEEccCCCEEEEEeC-CC
Q 010037          236 DRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEF--LAHEGSILTMKFSLDGQYLASGGE-DG  306 (519)
Q Consensus       236 ~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~-----~~~~~~~l--~~H~~~I~~l~fspdg~~LaSgs~-Dg  306 (519)
                      ..+.|++|.|.+ +-|++|+..| |.+|........-.     .....+.+  .+| .+|++|.|.+||..|++++. |.
T Consensus       141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence            345578999965 5666776655 99998764221111     11122223  345 68999999999999999885 67


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      .|.|||..++..+.-.                                                              ..
T Consensus       219 si~iWdpdtg~~~pL~--------------------------------------------------------------~~  236 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPLI--------------------------------------------------------------PK  236 (445)
T ss_pred             eEEEEcCCCCCccccc--------------------------------------------------------------cc
Confidence            8999999888743211                                                              11


Q ss_pred             cCCCeeEEEEcCCC-eEEEEeCCCcEEEEEC-CCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC---
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---  461 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl-~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~---  461 (519)
                      ..+.+.-+.|+|++ +|+.++-|+..++|+. ++-.+.+-.-..+.|+..+|+| .|.+|+..+. |.-++|.+.-.   
T Consensus       237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~  314 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGED  314 (445)
T ss_pred             CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCC
Confidence            24567889999999 9999999999999954 4444545455667999999999 6766554432 33445544210   


Q ss_pred             ----------cE--E-ee---------ccCCCceEEEEEeeCCCEEEEEecC--------CeEEEEECCCCeeee
Q 010037          462 ----------QV--V-DY---------TDIREIVSAVCYCPDGKGGIVGTMT--------GNCRFYDIKGMQIFD  506 (519)
Q Consensus       462 ----------~~--~-~~---------~~~~~~V~~v~~spdg~~l~sgs~d--------g~v~iwdl~~~~l~~  506 (519)
                                ..  + .+         .-..+.+.+++|.|.|.+||+.-..        +.|.+||.+.-..+.
T Consensus       315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve  389 (445)
T KOG2139|consen  315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE  389 (445)
T ss_pred             ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence                      00  0 11         1124678899999999999986543        336677776544433

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.11  E-value=1.6e-10  Score=128.56  Aligned_cols=196  Identities=19%  Similarity=0.343  Sum_probs=150.4

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      ++.+.+.+.++.-||...+-++|+.||.|++|.+..+.....    .+  .+-+..|+.+.|+.+|+.+..+..||.+.+
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~----~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC----FR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE----ee--ccCcchhhhhhhcccCCceeeeccCCceee
Confidence            444556666788999999999999999999999986554322    11  122378999999999999999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      |.+..                                                               ++....+.|...
T Consensus      2278 ~q~~p---------------------------------------------------------------k~~~s~qchnk~ 2294 (2439)
T KOG1064|consen 2278 WQASP---------------------------------------------------------------KPYTSWQCHNKA 2294 (2439)
T ss_pred             cccCC---------------------------------------------------------------cceeccccCCcc
Confidence            98741                                                               234445668888


Q ss_pred             eeEEEEcCCCeEEEE---eCCCcEEEEECCCCe--EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          391 VLDLSWSKNGFLLSS---SADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       391 V~~l~~sp~~~L~sg---s~Dg~V~lWdl~~~~--~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      ..++.|-.. .++++   +.++.+.+||..-..  .+....|...++++++-| ..++|++|+.+|.|++||++..++.+
T Consensus      2295 ~~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2295 LSDFRFIGS-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred             ccceeeeeh-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHH
Confidence            888888763 45554   367899999975432  222245999999999999 89999999999999999999988774


Q ss_pred             eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ....        +. ...++++|+..|.++||++....++.
T Consensus      2373 ~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2373 TFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred             Hhhh--------hh-hhheeeccCcccceEEEEccccchhh
Confidence            3222        44 55689999999999999998765543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=2e-08  Score=104.96  Aligned_cols=178  Identities=17%  Similarity=0.131  Sum_probs=119.7

Q ss_pred             eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEecccCeeeceeeccCCCCceEEE
Q 010037          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLYF  334 (519)
Q Consensus       258 ~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~  334 (519)
                      +|.++|.....        .+.+..+...+....|+|||++|+..+.+   ..|.+|++.+++...              
T Consensus       180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------  237 (430)
T PRK00178        180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------  237 (430)
T ss_pred             EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------
Confidence            46666765322        12345677789999999999999876643   358888886654211              


Q ss_pred             eecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-EEeCCC--c
Q 010037          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK--T  410 (519)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~-sgs~Dg--~  410 (519)
                                                                       +....+.+...+|+|+| .|+ +.+.++  .
T Consensus       238 -------------------------------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~  268 (430)
T PRK00178        238 -------------------------------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE  268 (430)
T ss_pred             -------------------------------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence                                                             00111223457899999 555 555555  5


Q ss_pred             EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEE
Q 010037          411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV  487 (519)
Q Consensus       411 V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~s  487 (519)
                      |.+||+.++.......+........|+| +++.++..+. +|  .|+++|+.+++...+...........|+|||+.|+.
T Consensus       269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        269 IYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence            8888999887665555666677889999 8887766553 33  688888888776544333333456789999999987


Q ss_pred             EecC-C--eEEEEECCCCeeeec
Q 010037          488 GTMT-G--NCRFYDIKGMQIFDL  507 (519)
Q Consensus       488 gs~d-g--~v~iwdl~~~~l~~~  507 (519)
                      .+.+ +  .|.+||+.+++...+
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~~l  370 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVRIL  370 (430)
T ss_pred             EEccCCceEEEEEECCCCCEEEc
Confidence            7653 3  488999988766554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.08  E-value=1.5e-07  Score=93.66  Aligned_cols=244  Identities=11%  Similarity=0.047  Sum_probs=145.4

Q ss_pred             eecCCCCeEEeeec----------CCeEEEeeCCcccccccccccc-c-eeecCCCCEEEEEEccCCCEEEEEe-C-CCc
Q 010037          242 TLKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTG-Q-EFLAHEGSILTMKFSLDGQYLASGG-E-DGT  307 (519)
Q Consensus       242 ~~sp~g~~lasgs~----------dg~I~vw~~~~~~~~~~~~~~~-~-~l~~H~~~I~~l~fspdg~~LaSgs-~-Dg~  307 (519)
                      .++||++.|+++..          +..|.|||....+.... +... . .+. .-.....++++|||++|+... . +..
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~-i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~  129 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD-IELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPA  129 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-EccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCE
Confidence            38999998877554          78999999986553211 1100 0 000 112234789999999998776 3 689


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |.+.|+.+++.+..+..+.  ...++........+.+  .+.....    +....++....-...++.....++.     
T Consensus       130 V~VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~~~~--~Dg~~~~----v~~d~~g~~~~~~~~vf~~~~~~v~-----  196 (352)
T TIGR02658       130 VGVVDLEGKAFVRMMDVPD--CYHIFPTANDTFFMHC--RDGSLAK----VGYGTKGNPKIKPTEVFHPEDEYLI-----  196 (352)
T ss_pred             EEEEECCCCcEEEEEeCCC--CcEEEEecCCccEEEe--ecCceEE----EEecCCCceEEeeeeeecCCccccc-----
Confidence            9999999999988887633  2222222222111111  1111100    0011111111111111100000000     


Q ss_pred             CCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCC-----CeEEEEec--------CCCcEEEEEEeeCCCCEEEEEe----
Q 010037          388 SSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGI-----DRCLRVFS--------HNNYVTSVAFNPVDDNYFISGS----  448 (519)
Q Consensus       388 ~~~V~~l~~sp-~~-~L~sgs~Dg~V~lWdl~~-----~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs----  448 (519)
                      ..+    .|.+ +| ++..... |+|.+.|+..     ......+.        ....+.-++++| +++.++...    
T Consensus       197 ~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~  270 (352)
T TIGR02658       197 NHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRA  270 (352)
T ss_pred             cCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCc
Confidence            111    3455 66 5555555 9999999644     33333332        233445599999 777666642    


Q ss_pred             ------CCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC-EEEEEe-cCCeEEEEECCCCeeee
Q 010037          449 ------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       449 ------~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~sgs-~dg~v~iwdl~~~~l~~  506 (519)
                            ..+.|.++|..+++++........+..++++|||+ +|++.. .++.|.++|+.+++.+.
T Consensus       271 ~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       271 KWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             cccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence                  12479999999999998777788999999999999 777666 57889999999987654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.07  E-value=7.4e-09  Score=104.77  Aligned_cols=198  Identities=15%  Similarity=0.240  Sum_probs=144.3

Q ss_pred             cCCCEEEEEeCCCcEEEEecccCeeeceeeccC-CCCceEEEeecCCCCeEEeecc-----------CCceeeeeeeccC
Q 010037          294 LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVD-----------KEKIDKTKSLRKS  361 (519)
Q Consensus       294 pdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~s  361 (519)
                      |-..|+|....||.++||+...++....+.... ...+|.+....     ..+...           .........+.+.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            456799999999999999999998877764322 23334333322     111111           1112233445566


Q ss_pred             CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC
Q 010037          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV  439 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~  439 (519)
                      ..+.+..++.....+..  ...-..|.+.|.++.++.+- .|.+++.|+.+..|+....+.++.+. ....+.+++.+| 
T Consensus        78 ~~g~v~~ys~~~g~it~--~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-  154 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITA--KLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-  154 (541)
T ss_pred             CCccEEEEEecCCeEEE--EEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-
Confidence            66677776665433321  11224699999999998876 99999999999999999999998887 677899999999 


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeC-----CCEEEEE-ecCCeEEEEECCC
Q 010037          440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD-----GKGGIVG-TMTGNCRFYDIKG  501 (519)
Q Consensus       440 d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spd-----g~~l~sg-s~dg~v~iwdl~~  501 (519)
                      |+..+++++  ++|++||+++++++ .+.+|.++|.+++|.-+     |.+++++ ..+..+.+|-+..
T Consensus       155 D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            899999886  68999999999988 68999999999999887     6666553 4455577776643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=2.4e-08  Score=104.43  Aligned_cols=178  Identities=20%  Similarity=0.183  Sum_probs=116.7

Q ss_pred             eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEecccCeeeceeeccCCCCceEEE
Q 010037          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG--TVRVWKVIEHERLDGFDVQDTDPSCLYF  334 (519)
Q Consensus       258 ~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~  334 (519)
                      .|.++|......        +.+..+...+....|+|||+.|+..+. ++  .|.+||+.+++...              
T Consensus       199 ~l~i~d~dG~~~--------~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------  256 (448)
T PRK04792        199 QLMIADYDGYNE--------QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------  256 (448)
T ss_pred             EEEEEeCCCCCc--------eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------
Confidence            566666653321        234456778899999999998887654 33  47777776554210              


Q ss_pred             eecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-EEeCCCc--
Q 010037          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKT--  410 (519)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~-sgs~Dg~--  410 (519)
                                                                    +..+.   +.....+|+|+| .|+ +.+.++.  
T Consensus       257 ----------------------------------------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        257 ----------------------------------------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             ----------------------------------------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeE
Confidence                                                          00111   122357899999 554 5566665  


Q ss_pred             EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEE
Q 010037          411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV  487 (519)
Q Consensus       411 V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~s  487 (519)
                      |.+||+.+++......+.......+|+| +++.|+..+. ++  .|.++|+.+++...+..........+|+|||++|+.
T Consensus       288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        288 IYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence            7788998887665555666678899999 8887766553 33  577778887776554333333456799999999887


Q ss_pred             EecC-C--eEEEEECCCCeeeec
Q 010037          488 GTMT-G--NCRFYDIKGMQIFDL  507 (519)
Q Consensus       488 gs~d-g--~v~iwdl~~~~l~~~  507 (519)
                      .+.+ +  .|.++|+.+++...+
T Consensus       367 ~~~~~g~~~I~~~dl~~g~~~~l  389 (448)
T PRK04792        367 VNRTNGKFNIARQDLETGAMQVL  389 (448)
T ss_pred             EEecCCceEEEEEECCCCCeEEc
Confidence            6653 3  466678888776544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.05  E-value=7.3e-09  Score=112.33  Aligned_cols=211  Identities=15%  Similarity=0.254  Sum_probs=133.5

Q ss_pred             eeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCee-------eceeeccCCCCceEEEeecCCCCeEEeeccCC
Q 010037          279 EFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE  350 (519)
Q Consensus       279 ~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (519)
                      .+..|...|..++.++.. .+++||+.||+|++|+...-..       ..++........++.+..+...  ++      
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~--~A------ 1114 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ--FA------ 1114 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe--EE------
Confidence            355688888888887754 8999999999999999854321       1111111222222222222211  11      


Q ss_pred             ceeeeeeeccCCCeeEEEeCCccccc---cccceeEeeccC-CCeeEE-EEcCC--C-eEEEEeCCCcEEEEECCCCeEE
Q 010037          351 KIDKTKSLRKSSDLTCVVLPPKVFRL---LEKPLHEFQGHS-SEVLDL-SWSKN--G-FLLSSSADKTVRLWQVGIDRCL  422 (519)
Q Consensus       351 ~~~~~~~~~~s~~~~~~~~~~~~~~~---~~~~~~~~~~h~-~~V~~l-~~sp~--~-~L~sgs~Dg~V~lWdl~~~~~~  422 (519)
                              .++.++.+.+........   ..........+. +.+.+| +|...  . .|+.+..-+.|..||+++...+
T Consensus      1115 --------v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1115 --------VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred             --------EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence                    124444444444333211   111112222222 223333 33332  2 7788888999999999987766


Q ss_pred             EEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCC---CEEEEEe--cCC
Q 010037          423 RVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDG---KGGIVGT--MTG  492 (519)
Q Consensus       423 ~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg---~~l~sgs--~dg  492 (519)
                      ..++   ..+.|++++.+| .++++++|+..|.+.+||++-+..+.  ...+..+++.++.+|-.   ...++++  ..+
T Consensus      1187 w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred             HhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence            6554   457899999999 89999999999999999999888773  33455788888888743   3455544  466


Q ss_pred             eEEEEECCCCeeee
Q 010037          493 NCRFYDIKGMQIFD  506 (519)
Q Consensus       493 ~v~iwdl~~~~l~~  506 (519)
                      -|.+|++.+|...+
T Consensus      1266 evs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQT 1279 (1431)
T ss_pred             ceeeeecccCcceE
Confidence            79999999886543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.04  E-value=2.7e-09  Score=99.23  Aligned_cols=194  Identities=15%  Similarity=0.173  Sum_probs=137.8

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCee
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      ++.|++.+..++++..+|.+.+-+....     .+...|..++|+-.++..+|+. +.+.+.+||.|+.+..||++..+.
T Consensus       126 slD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  126 SLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             EEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence            3678999999999999999985544422     3445567899999999999987 456899999999999999863220


Q ss_pred             eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (519)
                         +         +                                                .+..+-|...|.+|.-+|
T Consensus       201 ---~---------i------------------------------------------------~~n~kvH~~GV~SI~ss~  220 (339)
T KOG0280|consen  201 ---F---------I------------------------------------------------WHNSKVHTSGVVSIYSSP  220 (339)
T ss_pred             ---e---------e------------------------------------------------eecceeeecceEEEecCC
Confidence               0         0                                                111245888999999888


Q ss_pred             CC--eEEEEeCCCcEEEEECC-CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE----E--eeccC
Q 010037          399 NG--FLLSSSADKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV----V--DYTDI  469 (519)
Q Consensus       399 ~~--~L~sgs~Dg~V~lWdl~-~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~----~--~~~~~  469 (519)
                      ..  +++||+.|-.|++||.+ -++++..-...+.|+.+.++|.....++.++.-.-.+|-+...+..    +  ....|
T Consensus       221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~h  300 (339)
T KOG0280|consen  221 PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIH  300 (339)
T ss_pred             CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccc
Confidence            65  99999999999999999 5788877777899999999995443444444333466666655321    1  24556


Q ss_pred             CCceEEEEEeeCCCEEEEEe-cCCeEE-EEE
Q 010037          470 REIVSAVCYCPDGKGGIVGT-MTGNCR-FYD  498 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs-~dg~v~-iwd  498 (519)
                      ...+..-.|......|++++ .|..++ +|-
T Consensus       301 dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  301 DSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             cceeeccccccccceeeeeeccccceeeeee
Confidence            66666666644445677754 355533 553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.01  E-value=1.7e-07  Score=95.03  Aligned_cols=186  Identities=16%  Similarity=0.193  Sum_probs=125.8

Q ss_pred             EEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCC
Q 010037          250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP  329 (519)
Q Consensus       250 lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~  329 (519)
                      +++-..+|.|.|.|....+.       ...+......-..+.|+|||+++++++.||.|.++|+.+.+.+..+..     
T Consensus         9 ~V~~~~~~~v~viD~~t~~~-------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-----   76 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKV-------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-----   76 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SE-------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------
T ss_pred             EEEecCCCEEEEEECCCCeE-------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----
Confidence            34566789999999874332       223443333334578999999999999999999999998886554432     


Q ss_pred             ceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEE-eC
Q 010037          330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SA  407 (519)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sg-s~  407 (519)
                                                                                .....+++++++| +++++ ..
T Consensus        77 ----------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~   98 (369)
T PF02239_consen   77 ----------------------------------------------------------GGNPRGIAVSPDGKYVYVANYE   98 (369)
T ss_dssp             ----------------------------------------------------------SSEEEEEEE--TTTEEEEEEEE
T ss_pred             ----------------------------------------------------------CCCcceEEEcCCCCEEEEEecC
Confidence                                                                      2235678999999 66654 57


Q ss_pred             CCcEEEEECCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCcEE--eeccCCCceEEE
Q 010037          408 DKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVV--DYTDIREIVSAV  476 (519)
Q Consensus       408 Dg~V~lWdl~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~~~~~--~~~~~~~~V~~v  476 (519)
                      .+.|.++|.++.++++.+.        ....+..|..+| ....++..-. -+.|.+-|....+.+  ............
T Consensus        99 ~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~  177 (369)
T PF02239_consen   99 PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG  177 (369)
T ss_dssp             TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred             CCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence            8999999999999998875        234678888888 6665555544 588888898775433  455556677889


Q ss_pred             EEeeCCCEEEEE-ecCCeEEEEECCCCeeee
Q 010037          477 CYCPDGKGGIVG-TMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       477 ~~spdg~~l~sg-s~dg~v~iwdl~~~~l~~  506 (519)
                      .|+|+|++++++ .....|-++|+.++++..
T Consensus       178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             EE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             ccCcccceeeecccccceeEEEeeccceEEE
Confidence            999999987765 456789999999987654

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.00  E-value=2.5e-08  Score=92.96  Aligned_cols=232  Identities=14%  Similarity=0.185  Sum_probs=140.8

Q ss_pred             cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc---CCC-EEEEEeCCCcEEEEecccCeeeceeeccCCCCc
Q 010037          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS  330 (519)
Q Consensus       255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~-~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~  330 (519)
                      ..|.+.++++...+...  ....  ..--+..+..|.|+.   +|. .|+-+-.+|.|.++..........+......  
T Consensus        44 R~Gkl~Lys~~d~~~~~--l~~~--q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~--  117 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSP--LDTL--QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK--  117 (339)
T ss_pred             eccceEEEeecccccCc--ccee--eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh--
Confidence            45778888887544321  1111  122345677888865   555 5677778899999987655433333221110  


Q ss_pred             eEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCC
Q 010037          331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD  408 (519)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~D  408 (519)
                        .....   ..+.+.+...+..   .+.....+.+.........  -+.++.+++|.-.++..+|+...  .+++|+.|
T Consensus       118 --ki~~~---~~lslD~~~~~~~---i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD  187 (339)
T KOG0280|consen  118 --KISVV---EALSLDISTSGTK---IFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD  187 (339)
T ss_pred             --hhhhe---eeeEEEeeccCce---EEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceEEecCCC
Confidence              00000   0111111111111   1111111111111111111  13355788999999999998766  89999999


Q ss_pred             CcEEEEECCC-CeEEEE--ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-CcEEeeccCCCceEEEEEeeCC--
Q 010037          409 KTVRLWQVGI-DRCLRV--FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCPDG--  482 (519)
Q Consensus       409 g~V~lWdl~~-~~~~~~--~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~~~~V~~v~~spdg--  482 (519)
                      +.+..||++. ++.+..  ..|...|.+|.-+|..+.++++|+.|..|++||.|+ ++++......+.|..+.++|.-  
T Consensus       188 ~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~  267 (339)
T KOG0280|consen  188 GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFH  267 (339)
T ss_pred             ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhh
Confidence            9999999993 333333  238999999999998899999999999999999995 6777777777999999999943  


Q ss_pred             CEEEEEecCCeEEEEECCCCe
Q 010037          483 KGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       483 ~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ..|+++-..| .+|-+.+.+.
T Consensus       268 ~lL~~CMh~G-~ki~~~~~~~  287 (339)
T KOG0280|consen  268 RLLAACMHNG-AKILDSSDKV  287 (339)
T ss_pred             HHHHHHHhcC-ceEEEecccc
Confidence            2333333333 4566655443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.98  E-value=8.9e-07  Score=89.59  Aligned_cols=250  Identities=13%  Similarity=0.220  Sum_probs=148.8

Q ss_pred             ceeecCCCCeEEeeec----CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEecc
Q 010037          240 SATLKPGDHELTLGQR----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVI  314 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~----dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~  314 (519)
                      -++++|++++|.+...    .+.|..|.+......+..+   ............++++|++++|+++.. +|.|.++++.
T Consensus        41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~---~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL---NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE---EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe---eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            3889999999988766    5799999887642222211   122223345567999999999998874 8999999997


Q ss_pred             cC-eeeceeec-------------cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037          315 EH-ERLDGFDV-------------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (519)
Q Consensus       315 ~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (519)
                      .. ........             ....+.++.+.++. ..++..+.....+..            +.++.....+..  
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~------------~~~~~~~~~l~~--  182 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYV------------YDIDDDTGKLTP--  182 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEE------------EEE-TTS-TEEE--
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEE------------EEEeCCCceEEE--
Confidence            73 33222110             01112233333332 223333333332221            112221111111  


Q ss_pred             eeEee-ccCCCeeEEEEcCCC-eE-EEEeCCCcEEEEECC--CCeE--EEEec-------CCCcEEEEEEeeCCCCEEEE
Q 010037          381 LHEFQ-GHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVG--IDRC--LRVFS-------HNNYVTSVAFNPVDDNYFIS  446 (519)
Q Consensus       381 ~~~~~-~h~~~V~~l~~sp~~-~L-~sgs~Dg~V~lWdl~--~~~~--~~~~~-------h~~~V~~v~fsp~d~~~l~s  446 (519)
                      ...+. ........++|+|++ ++ ++.-.+++|.++++.  .+..  +..+.       .......|+++| ++++|++
T Consensus       183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyv  261 (345)
T PF10282_consen  183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYV  261 (345)
T ss_dssp             EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEE
T ss_pred             eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEE
Confidence            12222 244568899999998 44 556678899999988  4432  22222       123688999999 8988777


Q ss_pred             Ee-CCCeEEEEEcC--CCcEE--ee-ccCCCceEEEEEeeCCCEEEEEec-CCeEEEEEC--CCCeeeecc
Q 010037          447 GS-IDGKVRIWEVR--RCQVV--DY-TDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDI--KGMQIFDLS  508 (519)
Q Consensus       447 gs-~Dg~V~iwd~~--~~~~~--~~-~~~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl--~~~~l~~~~  508 (519)
                      +. ..+.|.+|++.  ++++.  .. .........++++|+|++|+++.. ++.|.+|++  .+|++....
T Consensus       262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence            66 46789999994  34433  22 223455899999999999998874 568999865  678776554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=1.9e-07  Score=94.21  Aligned_cols=243  Identities=14%  Similarity=0.199  Sum_probs=145.9

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC--CEEEE-----EeCCCcEEEEec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG--QYLAS-----GGEDGTVRVWKV  313 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~LaS-----gs~Dg~I~iWd~  313 (519)
                      ..|++|..+.|- -..+.+++|+........        -.-|...|..+.+||.+  ..+|+     .|.-+.|+||.+
T Consensus       131 ~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~--------~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~  201 (566)
T KOG2315|consen  131 PQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ--------HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKY  201 (566)
T ss_pred             cccccchhhhhh-hhcceEEEEecCCcccee--------eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecc
Confidence            456666654433 235679999987633221        23467889999999964  34544     456678999998


Q ss_pred             ccCeeeceeec---cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          314 IEHERLDGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       314 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      .....-..+..   -......+.|.......++....+-++...    .--+...+.++...     +.....--...++
T Consensus       202 ~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~----SYYGEq~Lyll~t~-----g~s~~V~L~k~GP  272 (566)
T KOG2315|consen  202 PEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA----SYYGEQTLYLLATQ-----GESVSVPLLKEGP  272 (566)
T ss_pred             ccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc----cccccceEEEEEec-----CceEEEecCCCCC
Confidence            63322111110   111112233333333333333222221100    00011122222221     0111111124789


Q ss_pred             eeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCCcEE
Q 010037          391 VLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVV  464 (519)
Q Consensus       391 V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~~~~~~~  464 (519)
                      |.++.|+|++   -++-|-+-.++.|+|++.. ++..| ..++=+++-|+| .|++++.++.   -|.+-|||+.+.+++
T Consensus       273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df-~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF-PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             ceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC-CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhc
Confidence            9999999999   4455668889999998754 44444 356678899999 8999888775   478999999998777


Q ss_pred             eeccCCCceEEEEEeeCCCEEEEEec------CCeEEEEECCCCeee
Q 010037          465 DYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKGMQIF  505 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~~l~sgs~------dg~v~iwdl~~~~l~  505 (519)
                      ......+ -+-+.|+|||++++|++.      |+.++||+..+..+.
T Consensus       350 ~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  350 AKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             cccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence            4433333 355799999999999886      688999999765543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=2.6e-07  Score=95.27  Aligned_cols=261  Identities=13%  Similarity=0.167  Sum_probs=161.9

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCcccc--------ccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSR--------ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~--------~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      .|++|+....++|+|+.||.++|-.+.....        ..+++.+.|++.||.+.|.-+.|+.+.+.|-|...+|.|.+
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV   97 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV   97 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence            4689999999999999999999998864322        23456677999999999999999999999999999999999


Q ss_pred             EecccCeeeceeeccCCCCc--eEEEeecCCC--------CeEEeeccCCceeeee-----------------eeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPS--CLYFTINHLS--------QLIPIDVDKEKIDKTK-----------------SLRKSSD  363 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----------------~~~~s~~  363 (519)
                      |-+-.+.-...+-.......  .+.|..++..        .++...+++.++....                 .+.+-..
T Consensus        98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~an  177 (1189)
T KOG2041|consen   98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKAN  177 (1189)
T ss_pred             EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcC
Confidence            99977764444332222222  2333332221        1112222222211000                 0111222


Q ss_pred             eeEEEeCCc-ccccccccee--E----eeccCCCeeEEEEc--------CCC-eEEEEeCCCcEEEEECCCCeEEEEecC
Q 010037          364 LTCVVLPPK-VFRLLEKPLH--E----FQGHSSEVLDLSWS--------KNG-FLLSSSADKTVRLWQVGIDRCLRVFSH  427 (519)
Q Consensus       364 ~~~~~~~~~-~~~~~~~~~~--~----~~~h~~~V~~l~~s--------p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h  427 (519)
                      +.+.+++.. .|...-+.-.  .    +......|..+.|.        |+. .|+.+-..|.+.|-.-.+......+..
T Consensus       178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt  257 (1189)
T KOG2041|consen  178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT  257 (1189)
T ss_pred             CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec
Confidence            333333321 1111111111  0    11112235566664        355 899999999998876655555555666


Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCC---------eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          428 NNYVTSVAFNPVDDNYFISGSIDG---------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       428 ~~~V~~v~fsp~d~~~l~sgs~Dg---------~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      .-.+..+.|+| +|..|+.++.+.         .|.+|..-..-+-.+......|++++|-..|-.++.+- |+.|++=+
T Consensus       258 gm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfan  335 (1189)
T KOG2041|consen  258 GMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFAN  335 (1189)
T ss_pred             ccEeecceecC-CCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEe
Confidence            67899999999 999999988652         45555544333335666777899999987776666554 56666655


Q ss_pred             CCC
Q 010037          499 IKG  501 (519)
Q Consensus       499 l~~  501 (519)
                      ++-
T Consensus       336 IRP  338 (1189)
T KOG2041|consen  336 IRP  338 (1189)
T ss_pred             ecc
Confidence            553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.92  E-value=6.3e-09  Score=97.38  Aligned_cols=244  Identities=18%  Similarity=0.261  Sum_probs=148.3

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCC------------CCEEEEEEccCCC--EEE
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA  300 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~La  300 (519)
                      .+.+.++.|...|.+|++|...|+|.++.-.+...-.  .....+|++|.            ..|..+.|..++.  .++
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce--ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE--YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccc--hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            3566778999999999999999999999876543111  11112355554            3588899977553  455


Q ss_pred             EEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (519)
Q Consensus       301 Sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (519)
                      ..+.|.+|++|.+........-+..   . .-.+.....+.+..       .........+....++         ..+|
T Consensus       104 lstNdktiKlWKiyeknlk~va~nn---l-s~~~~~~~~g~~~s-------~~~l~lprls~hd~ii---------aa~p  163 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENN---L-SDSFHSPMGGPLTS-------TKELLLPRLSEHDEII---------AAKP  163 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccc---c-ccccccccCCCcCC-------HHHhhcccccccceEE---------Eecc
Confidence            5668999999998765432111000   0 00000000000000       0000000001111110         0122


Q ss_pred             eeEe-eccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE-EEEe---cC-----CCcEEEEEEeeCCCCEEEEEeCC
Q 010037          381 LHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC-LRVF---SH-----NNYVTSVAFNPVDDNYFISGSID  450 (519)
Q Consensus       381 ~~~~-~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~-~~~~---~h-----~~~V~~v~fsp~d~~~l~sgs~D  450 (519)
                      .+.+ ..|.--|.++.+..+...+..+.|=.|.+|++..... ....   +|     ...|++..|+|...+.|.-.+..
T Consensus       164 ~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk  243 (460)
T COG5170         164 CRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK  243 (460)
T ss_pred             ceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence            3333 5688889999999988555556788899999874322 1111   23     34689999999878888888999


Q ss_pred             CeEEEEEcCCCcEE-------e----------eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          451 GKVRIWEVRRCQVV-------D----------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       451 g~V~iwd~~~~~~~-------~----------~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      |.|++-|++...+-       .          +......|..+.|+++|+++++-+.- +|+|||++.
T Consensus       244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm  310 (460)
T COG5170         244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNM  310 (460)
T ss_pred             CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEeccc
Confidence            99999999853211       0          12233468889999999998887654 799999864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=9.8e-07  Score=89.11  Aligned_cols=254  Identities=17%  Similarity=0.234  Sum_probs=150.9

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE-----eC-----CCcEE
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-----GE-----DGTVR  309 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg-----s~-----Dg~I~  309 (519)
                      ..+++++|+++|.+ .++.|+|++.......+         .--...+.++.|+|-|.||.|-     ..     .-.++
T Consensus        39 v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~l---------t~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~  108 (566)
T KOG2315|consen   39 VFAYSNNGRLFAYS-DNQVVKVFEIATLKVVL---------CVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL  108 (566)
T ss_pred             eEEEcCCCcEEEEE-cCCeEEEEEccCCcEEE---------EeccceeeeeeecccccccccccccccccCCCCCCCcee
Confidence            35788999888876 45779999887544211         1122268899999999999872     12     23577


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCC-------CeEEeeccC----------CceeeeeeeccCCCeeEEEeCCc
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLS-------QLIPIDVDK----------EKIDKTKSLRKSSDLTCVVLPPK  372 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----------~~~~~~~~~~~s~~~~~~~~~~~  372 (519)
                      +|++.++.....+........+..|+.+...       .+.......          .++.......+.....+.++-+.
T Consensus       109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe  188 (566)
T KOG2315|consen  109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE  188 (566)
T ss_pred             eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence            9999986554444433333334444333211       111111111          11111111111122222222221


Q ss_pred             c---------ccccc----cceeEeeccCCCeeEEEEcCCC--eEEEEe--CC---------CcEEEEECCCCeEEEEec
Q 010037          373 V---------FRLLE----KPLHEFQGHSSEVLDLSWSKNG--FLLSSS--AD---------KTVRLWQVGIDRCLRVFS  426 (519)
Q Consensus       373 ~---------~~~~~----~~~~~~~~h~~~V~~l~~sp~~--~L~sgs--~D---------g~V~lWdl~~~~~~~~~~  426 (519)
                      .         +.+..    .++..-.-....-..+.|++-|  +|+.++  -|         .++++.++....+...+.
T Consensus       189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~  268 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL  268 (566)
T ss_pred             CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence            1         11110    0110000012344568899877  444333  33         368999999778888888


Q ss_pred             CCCcEEEEEEeeCCCCEEEE--EeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEec---CCeEEEEECCC
Q 010037          427 HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKG  501 (519)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~s--gs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~---dg~v~iwdl~~  501 (519)
                      ..++|.+++|+| ++.-|++  |-.-.++.|+|++..-+..+.  .++-+++-|+|.|++|+.++-   .|.|.|||+.+
T Consensus       269 k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  269 KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCCceEEEECC-CCCEEEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            899999999999 7765554  556789999999865554443  345678899999999998876   48899999998


Q ss_pred             Ceeee
Q 010037          502 MQIFD  506 (519)
Q Consensus       502 ~~l~~  506 (519)
                      .+++.
T Consensus       346 ~K~i~  350 (566)
T KOG2315|consen  346 RKLIA  350 (566)
T ss_pred             hhhcc
Confidence            76653

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.86  E-value=2.1e-08  Score=97.28  Aligned_cols=79  Identities=23%  Similarity=0.552  Sum_probs=70.0

Q ss_pred             eeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      .-||-..+++++|+|++ +|+++..|..||+-.......+..|  +|...|..++.-+  +..|++|+.|++|++||+.+
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence            46799999999999999 9999999999999888777666665  4999999999986  56699999999999999999


Q ss_pred             CcEE
Q 010037          461 CQVV  464 (519)
Q Consensus       461 ~~~~  464 (519)
                      ++.+
T Consensus       225 gk~L  228 (390)
T KOG3914|consen  225 GKLL  228 (390)
T ss_pred             CCcc
Confidence            8765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.85  E-value=7.3e-07  Score=102.02  Aligned_cols=218  Identities=10%  Similarity=0.093  Sum_probs=136.4

Q ss_pred             cceeecCCCCeEEee-ecCCeEEEeeCCccccc-ccc-ccccceeecC-------CCCEEEEEEcc-CCCEEEEEeCCCc
Q 010037          239 GSATLKPGDHELTLG-QRMRRVRVHPVKKQSRE-LSS-LYTGQEFLAH-------EGSILTMKFSL-DGQYLASGGEDGT  307 (519)
Q Consensus       239 ~~~~~sp~g~~lasg-s~dg~I~vw~~~~~~~~-~~~-~~~~~~l~~H-------~~~I~~l~fsp-dg~~LaSgs~Dg~  307 (519)
                      ..+++.+++..|+++ ...+.|++++....... +.. ......+.+.       -..-+.|+|+| ++..+++.+.++.
T Consensus       627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~  706 (1057)
T PLN02919        627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQ  706 (1057)
T ss_pred             cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCe
Confidence            457888888766554 44578898887643321 000 0000000000       11236899999 5666777778899


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |++||..++... .+.            .....                   ....              +. . .....
T Consensus       707 I~v~d~~~g~v~-~~~------------G~G~~-------------------~~~~--------------g~-~-~~~~~  738 (1057)
T PLN02919        707 IWEYNISDGVTR-VFS------------GDGYE-------------------RNLN--------------GS-S-GTSTS  738 (1057)
T ss_pred             EEEEECCCCeEE-EEe------------cCCcc-------------------ccCC--------------CC-c-ccccc
Confidence            999998665421 110            00000                   0000              00 0 00011


Q ss_pred             CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-------------c-C--------CCcEEEEEEeeCCCCE
Q 010037          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-------------S-H--------NNYVTSVAFNPVDDNY  443 (519)
Q Consensus       388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~-------------~-h--------~~~V~~v~fsp~d~~~  443 (519)
                      -.....|+++|++  .+++-+.++.|++||+.++......             . +        -.....++++| ++++
T Consensus       739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~L  817 (1057)
T PLN02919        739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQI  817 (1057)
T ss_pred             ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcE
Confidence            2346779999998  4556667799999999876532111             0 0        11246889999 8899


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEeeccCC--------------CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          444 FISGSIDGKVRIWEVRRCQVVDYTDIR--------------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~~~~~~~~--------------~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +++-+.++.|++||..++.+....+..              .....++++++|+++++-+.++.|++||+.++++.
T Consensus       818 YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~  893 (1057)
T PLN02919        818 YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA  893 (1057)
T ss_pred             EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence            999999999999999988776443221              24678999999998888888999999999988653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.84  E-value=2.7e-06  Score=79.73  Aligned_cols=243  Identities=12%  Similarity=0.100  Sum_probs=119.3

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~  320 (519)
                      ++.+++|++||+- .|..|.|...++.-....  -..+.-+.-.-.=+.++||||+..||.+...|+|+++|+....+. 
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-   78 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-   78 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-
Confidence            4667888888775 677888877654322211  111111222223467999999999999999999999999764432 


Q ss_pred             eeeccCC-------CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCC-ccccccccceeEeec-cCCCe
Q 010037          321 GFDVQDT-------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP-KVFRLLEKPLHEFQG-HSSEV  391 (519)
Q Consensus       321 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~-h~~~V  391 (519)
                      .+.....       .+..+.|......        ..-......+.-.+...-..... ..-...+.....+.. +...|
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s--------~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi  150 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKS--------AQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI  150 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccc--------cccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence            2221110       1111112111100        00001111111111111111111 000111112223333 46789


Q ss_pred             eEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC------eEEEEEcCCCc
Q 010037          392 LDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG------KVRIWEVRRCQ  462 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs-~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg------~V~iwd~~~~~  462 (519)
                      .++.|+|.. +|+.|+ ....-..+.          .....+++-..-.....+..+.+. |+      +..+|.+-+.+
T Consensus       151 ~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~  220 (282)
T PF15492_consen  151 NSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK  220 (282)
T ss_pred             eEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee
Confidence            999999987 554444 333211110          011112221111101111111111 11      12334433333


Q ss_pred             EE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          463 VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       463 ~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      .. ........|..+..+|||+.||+...+|.|.+|++.+.+++
T Consensus       221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  221 FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            22 22345678999999999999999999999999999886654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.81  E-value=4.3e-08  Score=93.14  Aligned_cols=202  Identities=14%  Similarity=0.271  Sum_probs=132.8

Q ss_pred             CeEEeeecCCeEEEeeCCcccccccc--------------c--------------ccccee-ecCCCCEEEEEEccCCCE
Q 010037          248 HELTLGQRMRRVRVHPVKKQSRELSS--------------L--------------YTGQEF-LAHEGSILTMKFSLDGQY  298 (519)
Q Consensus       248 ~~lasgs~dg~I~vw~~~~~~~~~~~--------------~--------------~~~~~l-~~H~~~I~~l~fspdg~~  298 (519)
                      ..++..+.|.+|++|.+.........              +              .+.+.+ .+|+--|++|.++.|+..
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence            45667778999999988754432200              0              000111 368888999999999998


Q ss_pred             EEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037          299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (519)
Q Consensus       299 LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (519)
                      ++++ .|=.|.+|++.-.....                                            .++-..+       
T Consensus       179 ~lSA-DdLRINLWnlei~d~sF--------------------------------------------nIVDIKP-------  206 (433)
T KOG1354|consen  179 FLSA-DDLRINLWNLEIIDQSF--------------------------------------------NIVDIKP-------  206 (433)
T ss_pred             Eeec-cceeeeeccccccCCce--------------------------------------------eEEEccc-------
Confidence            8877 57789999985322100                                            0000000       


Q ss_pred             cceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE----EEEec-------------CCCcEEEEEEeeC
Q 010037          379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC----LRVFS-------------HNNYVTSVAFNPV  439 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~----~~~~~-------------h~~~V~~v~fsp~  439 (519)
                         ..+..-..-|++..|+|..  .++-.+..|+|+|-|++....    .+.|.             .-..|..+.|++ 
T Consensus       207 ---~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-  282 (433)
T KOG1354|consen  207 ---ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-  282 (433)
T ss_pred             ---cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-
Confidence               0111223457888899976  888888899999999984321    12221             124578899999 


Q ss_pred             CCCEEEEEeCCCeEEEEEcCC-CcEEe-eccC------------CCc---eEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          440 DDNYFISGSIDGKVRIWEVRR-CQVVD-YTDI------------REI---VSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       440 d~~~l~sgs~Dg~V~iwd~~~-~~~~~-~~~~------------~~~---V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      +|+|+++-.. -+|+|||++. .+.+. +.-|            .+.   -..++|+-++.++++|+....+++|++..|
T Consensus       283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            9999998654 4899999953 33332 2211            111   245899999999999999999999997766


Q ss_pred             eeee
Q 010037          503 QIFD  506 (519)
Q Consensus       503 ~l~~  506 (519)
                      ....
T Consensus       362 sk~d  365 (433)
T KOG1354|consen  362 SKED  365 (433)
T ss_pred             ccee
Confidence            5443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.78  E-value=1e-06  Score=89.60  Aligned_cols=191  Identities=19%  Similarity=0.282  Sum_probs=129.8

Q ss_pred             cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEE------c--------------cCCCEEEEEe
Q 010037          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF------S--------------LDGQYLASGG  303 (519)
Q Consensus       244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f------s--------------pdg~~LaSgs  303 (519)
                      .|...++|....||.++||+........ .+...   ..-.+...+.+|      +              .+...|+-|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~-e~~p~---~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQ-EFAPI---ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeee-eeccc---hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            4567799999999999999998654321 11111   111233334443      1              1334677788


Q ss_pred             CCCcEEEEecccCeeeceeeccCCCCceEEEe-ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (519)
Q Consensus       304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (519)
                      ..|.|.+|++..++....+............. .....               .....+.+..+..|..+..    ..++
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---------------ciyS~~ad~~v~~~~~~~~----~~~~  138 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---------------CIYSVGADLKVVYILEKEK----VIIR  138 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC---------------ceEecCCceeEEEEecccc----eeee
Confidence            89999999999998877765433322221111 11111               1234456667777766653    3467


Q ss_pred             EeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCC-----CCEEEEE-eCCCeEE
Q 010037          383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD-----DNYFISG-SIDGKVR  454 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d-----~~~l~sg-s~Dg~V~  454 (519)
                      .+.+....+.+++.+|++ .|++++  ++|++||+++++.+..|. |.++|.+++|-. .     |.+++++ ..+.-+.
T Consensus       139 ~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-~~~g~~G~~vLssa~~~r~i~  215 (541)
T KOG4547|consen  139 IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-LIDGIIGKYVLSSAAAERGIT  215 (541)
T ss_pred             eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-eccccccceeeecccccccee
Confidence            788888999999999999 888887  689999999999999997 999999999987 4     5566554 3455678


Q ss_pred             EEEcCC
Q 010037          455 IWEVRR  460 (519)
Q Consensus       455 iwd~~~  460 (519)
                      +|-+..
T Consensus       216 ~w~v~~  221 (541)
T KOG4547|consen  216 VWVVEK  221 (541)
T ss_pred             EEEEEc
Confidence            887654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=5.7e-07  Score=93.51  Aligned_cols=94  Identities=7%  Similarity=0.020  Sum_probs=68.4

Q ss_pred             CCCeeEEEEcCCC-eEEEEeCC---CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEcCC
Q 010037          388 SSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRR  460 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~D---g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~~~  460 (519)
                      ...+....|+|+| .|+..+.+   ..|.+||+.+++..........+....|+| ++++|+....   ...|.+||+.+
T Consensus       326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence            3456678899999 66655443   469999999988765544445678899999 8887775433   35799999998


Q ss_pred             CcEEeeccCCCceEEEEEeeCC
Q 010037          461 CQVVDYTDIREIVSAVCYCPDG  482 (519)
Q Consensus       461 ~~~~~~~~~~~~V~~v~~spdg  482 (519)
                      ++...+....+.+...+|+|-.
T Consensus       405 g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        405 KKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCEEEeecCCCcccCceecCCC
Confidence            8777666556667788888754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.77  E-value=1.8e-06  Score=86.34  Aligned_cols=265  Identities=16%  Similarity=0.196  Sum_probs=160.4

Q ss_pred             ccccccccCCeeeEeeccc-------ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEc
Q 010037          221 KRGWLKKLGAMARIIDRHG-------SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS  293 (519)
Q Consensus       221 ~~~w~~~~~~~~~~~~~~~-------~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs  293 (519)
                      ...|.-..+.+......+.       -+.|+-+++++|-- -...++|+++. .........   .++  ...|....|+
T Consensus       110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t-~n~~~~p~~---~lr--~~gi~dFsis  182 (561)
T COG5354         110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT-DNIEEHPFK---NLR--PVGILDFSIS  182 (561)
T ss_pred             eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC-CccccCchh---hcc--ccceeeEEec
Confidence            4556555555443333222       24577788877654 34568999873 222222111   111  3568889999


Q ss_pred             cCC--CEEEE-----EeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeE
Q 010037          294 LDG--QYLAS-----GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (519)
Q Consensus       294 pdg--~~LaS-----gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  366 (519)
                      |.+  ..||.     .+.++.++||.+..+..+.....-....-.+.|...+...++.+.... +..+.  .  -+....
T Consensus       183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~-ksnKs--y--fgesnL  257 (561)
T COG5354         183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT-KSNKS--Y--FGESNL  257 (561)
T ss_pred             CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEee-ecccc--e--eccceE
Confidence            953  44554     467899999999877766555544444444445444433332222111 10000  0  011122


Q ss_pred             EEeCCccccccccceeEeeccCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCE
Q 010037          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY  443 (519)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~  443 (519)
                      .++..     .+..+.....-.++|.+.+|.|.+   -+++|-++..+.++|++..  +.-......=+.+.|+| .+++
T Consensus       258 yl~~~-----~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp-~~r~  329 (561)
T COG5354         258 YLLRI-----TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP-HERY  329 (561)
T ss_pred             EEEee-----cccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC-cccE
Confidence            22222     223333333567899999999987   4555678999999999987  33333445567789999 8999


Q ss_pred             EEEEeCC---CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEec------CCeEEEEECCCCeee
Q 010037          444 FISGSID---GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKGMQIF  505 (519)
Q Consensus       444 l~sgs~D---g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~------dg~v~iwdl~~~~l~  505 (519)
                      ++.++.|   |.|-+||......+.-.-.....+-+.|+|||+++.+...      |..|.|||+.+.+..
T Consensus       330 il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             EEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            9987765   6799999987655532222223455689999999888654      778999999876654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=7.4e-07  Score=89.73  Aligned_cols=114  Identities=13%  Similarity=0.339  Sum_probs=79.6

Q ss_pred             CCCeeEEEEcCCC-eEEEEe---CCCcEEEEECCC-C---eEEEEecCCCcEEEEEEeeCCCCEEEEEe---CCCeEEEE
Q 010037          388 SSEVLDLSWSKNG-FLLSSS---ADKTVRLWQVGI-D---RCLRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIW  456 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs---~Dg~V~lWdl~~-~---~~~~~~~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~iw  456 (519)
                      ...|...+|-|.| .+++-+   ...++.+|.+++ .   +.+..+. ....+.|.|+| .|++++.+.   ..|.+.++
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSP-KGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcC-CCcEEEEEEecccccceEEE
Confidence            4567889999999 544433   246799998874 2   2233333 35678999999 899888754   46889999


Q ss_pred             EcCCC--cEEeeccCCCceEEEEEeeCCCEEEEEec------CCeEEEEECCCCee
Q 010037          457 EVRRC--QVVDYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKGMQI  504 (519)
Q Consensus       457 d~~~~--~~~~~~~~~~~V~~v~~spdg~~l~sgs~------dg~v~iwdl~~~~l  504 (519)
                      |..-.  +......| ...+.+.|.|.|+|+++++.      |.--+||+.++..+
T Consensus       523 D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll  577 (698)
T KOG2314|consen  523 DTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL  577 (698)
T ss_pred             ecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence            99853  33333333 34578999999999999886      34467888876544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.76  E-value=8.7e-08  Score=92.99  Aligned_cols=101  Identities=21%  Similarity=0.358  Sum_probs=87.3

Q ss_pred             EEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeC
Q 010037          404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPD  481 (519)
Q Consensus       404 sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spd  481 (519)
                      .++....+.+|....+.+...+.|-..++.|+|+| |+++++++..|.+|||-.......+.  ..+|..-|..++..++
T Consensus       127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~  205 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN  205 (390)
T ss_pred             ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence            44556677788777788888889999999999999 89999999999999999998877773  5679999999999776


Q ss_pred             CCEEEEEecCCeEEEEECCCCeeee
Q 010037          482 GKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       482 g~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      . .|++|+.|+++++||+.+++...
T Consensus       206 ~-~LlS~sGD~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  206 Y-LLLSGSGDKTLRLWDITSGKLLD  229 (390)
T ss_pred             c-eeeecCCCCcEEEEecccCCccc
Confidence            5 48999999999999999998754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.76  E-value=2.9e-06  Score=87.76  Aligned_cols=194  Identities=9%  Similarity=0.075  Sum_probs=119.0

Q ss_pred             ceeecCCCCe-EEeeec---CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCC--cEEEEe
Q 010037          240 SATLKPGDHE-LTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TVRVWK  312 (519)
Q Consensus       240 ~~~~sp~g~~-lasgs~---dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg--~I~iWd  312 (519)
                      ...|+|+|+. ++..+.   ...|.++++..+...        .+....+.+....|+|||+.|+. .+.++  .|.+++
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~--------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE--------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE--------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            4689999985 554333   356888887654432        12234455667889999987654 33333  455555


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      +.++...                                                               .+..+.....
T Consensus       264 l~~g~~~---------------------------------------------------------------~LT~~~~~d~  280 (419)
T PRK04043        264 TNTKTLT---------------------------------------------------------------QITNYPGIDV  280 (419)
T ss_pred             CCCCcEE---------------------------------------------------------------EcccCCCccC
Confidence            5444311                                                               1111111123


Q ss_pred             EEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---------CeEEEEEcC
Q 010037          393 DLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---------GKVRIWEVR  459 (519)
Q Consensus       393 ~l~~sp~~-~L~sgs-~Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---------g~V~iwd~~  459 (519)
                      ...|+|+| .|+-.+ ..+  .|.+.|+.+++..+.......  ...|+| ++++++.....         ..|.+.|+.
T Consensus       281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~  357 (419)
T PRK04043        281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTN  357 (419)
T ss_pred             ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence            34799999 554443 333  588888888877554432222  248999 88888766543         368888998


Q ss_pred             CCcEEeeccCCCceEEEEEeeCCCEEEEEecCC---eEEEEECCCCeeeecc
Q 010037          460 RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKGMQIFDLS  508 (519)
Q Consensus       460 ~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg---~v~iwdl~~~~l~~~~  508 (519)
                      ++....+.... ......|+|||+.|+..+..+   .+.+.++.+.....+.
T Consensus       358 ~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~  408 (419)
T PRK04043        358 SDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP  408 (419)
T ss_pred             CCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence            88766554432 334688999999887766432   3778888776655553

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=1.4e-08  Score=101.48  Aligned_cols=172  Identities=17%  Similarity=0.299  Sum_probs=127.3

Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeee
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (519)
                      +.+.||+..|..+.--.+.+-+++++.|++|++|.+....--       ...                            
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~-------~~t----------------------------  773 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE-------IGT----------------------------  773 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc-------ccc----------------------------
Confidence            357899999999887777788999999999999998543210       000                            


Q ss_pred             eccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEE
Q 010037          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTS  433 (519)
Q Consensus       358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~  433 (519)
                                          .....+++.|+.+|.++.|-.+. ++++  -|+.|++||.--++++....   ..+.+..
T Consensus       774 --------------------saCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~  831 (1034)
T KOG4190|consen  774 --------------------SACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGN  831 (1034)
T ss_pred             --------------------ceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCce
Confidence                                01245577899999999998876 5544  48999999988887776442   2333444


Q ss_pred             EEEeeC-CCCEEEEE-eCCCeEEEEEcCCCcEE-e-----eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          434 VAFNPV-DDNYFISG-SIDGKVRIWEVRRCQVV-D-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       434 v~fsp~-d~~~l~sg-s~Dg~V~iwd~~~~~~~-~-----~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |..-|. +..+++.| +...+|+++|.+.+.-. .     .......+.+++..|.|++++++-..|.|.+.|.++|+++
T Consensus       832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI  911 (1034)
T ss_pred             eEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence            444342 45555555 67889999999987644 2     2344567899999999999999999999999999999976


Q ss_pred             e
Q 010037          506 D  506 (519)
Q Consensus       506 ~  506 (519)
                      .
T Consensus       912 N  912 (1034)
T KOG4190|consen  912 N  912 (1034)
T ss_pred             c
Confidence            4

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.73  E-value=4.2e-08  Score=101.30  Aligned_cols=210  Identities=18%  Similarity=0.257  Sum_probs=145.9

Q ss_pred             CCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEecccCeeeceee
Q 010037          245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFD  323 (519)
Q Consensus       245 p~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~~~~~~  323 (519)
                      |-..+-++......-.||++.........    -.+.+|..+|+.+.|+|+. ..||+++.|-.|+.||+++...     
T Consensus        79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIe----f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-----  149 (1081)
T KOG0309|consen   79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIE----FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-----  149 (1081)
T ss_pred             CCCceeEEecCcchhhhhhhhcCCccceE----EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc-----
Confidence            33445556566666778888754432221    2367999999999999955 5899999999999999976542     


Q ss_pred             ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE
Q 010037          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (519)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L  402 (519)
                                                                              ++..+..-......++|+-.. .+
T Consensus       150 --------------------------------------------------------p~ys~~~w~s~asqVkwnyk~p~v  173 (1081)
T KOG0309|consen  150 --------------------------------------------------------PFYSTSSWRSAASQVKWNYKDPNV  173 (1081)
T ss_pred             --------------------------------------------------------ceeeeecccccCceeeecccCcch
Confidence                                                                    122222223445667887765 67


Q ss_pred             EEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEEEE
Q 010037          403 LSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCY  478 (519)
Q Consensus       403 ~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~  478 (519)
                      ++.+..+.|++||++.+ .++..++ |-..|+.+.|+..-...+.+.+.||+|+.||..+...-  .......+|..-+|
T Consensus       174 lasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~  253 (1081)
T KOG0309|consen  174 LASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY  253 (1081)
T ss_pred             hhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence            77777888999999876 4555554 88889999998766677889999999999998765433  45556678888889


Q ss_pred             eeCCCEEEEE--ecCCeEEEEECCCCeeee--ccccceeEEecCC
Q 010037          479 CPDGKGGIVG--TMTGNCRFYDIKGMQIFD--LSTTAYLFALLGH  519 (519)
Q Consensus       479 spdg~~l~sg--s~dg~v~iwdl~~~~l~~--~~~~~~~~~l~GH  519 (519)
                      .|-|...++-  -.+..+.+++-++..+..  .....+++++.||
T Consensus       254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH  298 (1081)
T KOG0309|consen  254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH  298 (1081)
T ss_pred             cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc
Confidence            9976654442  223356666665543322  2344579999998

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.68  E-value=3.1e-06  Score=84.67  Aligned_cols=239  Identities=15%  Similarity=0.177  Sum_probs=152.9

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC-----------
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-----------  306 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg-----------  306 (519)
                      +..+.++|.|.+|++....| |.+|......+ +.      .+. | ..|.-+.|+|+++||.|-+.-+           
T Consensus        35 ~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~-l~------~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~  104 (561)
T COG5354          35 VAYVSESPLGTYLFSEHAAG-VECWGGPSKAK-LV------RFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF  104 (561)
T ss_pred             hhheeecCcchheehhhccc-eEEccccchhh-ee------eee-c-CCceecccCcccceeeeeccCCccChhhccCCc
Confidence            33478999999999876654 89998764442 21      111 2 3588999999999999975433           


Q ss_pred             ----cEEEEecccCeeeceeeccCCC--Cc-eEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          307 ----TVRVWKVIEHERLDGFDVQDTD--PS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       307 ----~I~iWd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                          .+.+||+.++..+..+......  .. .+.|+.+..-....                 ....+.++.. .-.+...
T Consensus       105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-----------------v~~sl~i~e~-t~n~~~~  166 (561)
T COG5354         105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-----------------VGSSLYIHEI-TDNIEEH  166 (561)
T ss_pred             cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-----------------ccCeEEEEec-CCccccC
Confidence                4899999999988877665544  22 33333332211111                 0111122221 1112223


Q ss_pred             ceeEeeccCCCeeEEEEcCCC---eEEE-----EeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe--
Q 010037          380 PLHEFQGHSSEVLDLSWSKNG---FLLS-----SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS--  448 (519)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~~---~L~s-----gs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs--  448 (519)
                      +.+.+.  ...|...+|+|.+   .|+.     ...++++++|.+..+..+.+.. ....=..+.|++ .+++|+.--  
T Consensus       167 p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t  243 (561)
T COG5354         167 PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMT  243 (561)
T ss_pred             chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEE
Confidence            333333  3568899999974   4443     4678899999999877766543 222224578888 777665421  


Q ss_pred             ---------CCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEe--cCCeEEEEECCCCeeeec
Q 010037          449 ---------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT--MTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       449 ---------~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs--~dg~v~iwdl~~~~l~~~  507 (519)
                               ....++|+++....+-...+..++|...+|.|.++.+++.+  ..-.+.++|++++-...+
T Consensus       244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~  313 (561)
T COG5354         244 HTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF  313 (561)
T ss_pred             eeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEec
Confidence                     12468888888655544447789999999999998776654  677899999988744444

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.67  E-value=5.5e-07  Score=85.77  Aligned_cols=209  Identities=17%  Similarity=0.247  Sum_probs=126.1

Q ss_pred             cceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc-Ceeeceeec-cCCCCceEEEeecCCCCeEEeeccCCceee
Q 010037          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDK  354 (519)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (519)
                      .+.+.||.+.|+....-|-..-+++.+.|.++|||--.. ++.-..+.. .+.+.+++.+....  ..+.+.........
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence            345789999999988888777899999999999996433 332222211 12223333332222  11111111111110


Q ss_pred             eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEE-------------------
Q 010037          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW-------------------  414 (519)
Q Consensus       355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lW-------------------  414 (519)
                      ...   +.          .+. .-...+.+..|...|..+-|+-.. .+++.+.|+.+.--                   
T Consensus        95 fs~---se----------dfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~  160 (404)
T KOG1409|consen   95 FAL---SE----------DFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASA  160 (404)
T ss_pred             EEh---hh----------hhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCC
Confidence            000   00          000 001122333455555555444433 44444444332211                   


Q ss_pred             --------------------EC--CCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC--cEEeeccC
Q 010037          415 --------------------QV--GIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVVDYTDI  469 (519)
Q Consensus       415 --------------------dl--~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~--~~~~~~~~  469 (519)
                                          .+  ..-.++..+ .|.+.+++++|.| ....|.+|..|..|.+||+-..  .......|
T Consensus       161 ~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh  239 (404)
T KOG1409|consen  161 LQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGH  239 (404)
T ss_pred             CceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccc
Confidence                                11  111122233 3899999999999 8899999999999999998654  45578889


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      ...|..+++.+--+.|++++.||.|.+|++...
T Consensus       240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            999999999999999999999999999999754

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.8e-07  Score=90.52  Aligned_cols=245  Identities=16%  Similarity=0.149  Sum_probs=165.5

Q ss_pred             ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEecccCeeece
Q 010037          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDG  321 (519)
Q Consensus       243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~~~~~~~~  321 (519)
                      +..-.+++.+++.||.++.|.-..    .........+..|.+.|.+++.+.+|..+.|.+. |..++++|+..-..+.-
T Consensus        16 ~~tka~fiiqASlDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm   91 (558)
T KOG0882|consen   16 FPTKAKFIIQASLDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM   91 (558)
T ss_pred             eeehhheEEeeecchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence            334557889999999999997653    1222333456789999999999999999999887 99999999988776655


Q ss_pred             eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-
Q 010037          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-  400 (519)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-  400 (519)
                      ++....+..+... ......+..+.           +....++.+.+++...-.  ......-.-|..+|.++.+.+-+ 
T Consensus        92 iKL~~lPg~a~wv-~skGd~~s~IA-----------Vs~~~sg~i~VvD~~~d~--~q~~~fkklH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen   92 IKLVDLPGFAEWV-TSKGDKISLIA-----------VSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             cccccCCCceEEe-cCCCCeeeeEE-----------eecccCCCcEEECCcCCc--CccceecccccCceEEEEeecccc
Confidence            5544333322222 22221111111           112223333333332211  01222334599999999999998 


Q ss_pred             eEEEEeCCCcEEEEECCC------CeEEEEe----------cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          401 FLLSSSADKTVRLWQVGI------DRCLRVF----------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~------~~~~~~~----------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      .+++....|.|.-|....      ......+          +.....+++.|+| ++..+.+-+.|.+|++++.++++++
T Consensus       158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence            888888899999998763      1111111          2456789999999 9999999999999999999988654


Q ss_pred             eecc---------------------------------C-CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          465 DYTD---------------------------------I-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       465 ~~~~---------------------------------~-~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      +..+                                 + ...-+.++|...|++|+-|+.=| |++.++.++.+..+
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri  312 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI  312 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence            2110                                 1 11245688999999999988765 78999999887765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.62  E-value=7.9e-06  Score=92.02  Aligned_cols=252  Identities=16%  Similarity=0.183  Sum_probs=152.4

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCc-----------------------cccccc--------------cccc
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------------------QSRELS--------------SLYT  276 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~-----------------------~~~~~~--------------~~~~  276 (519)
                      ...++.+++|+||+..|+..+.+++|.+-...=                       ++++-.              ....
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            345677899999999999999999987753210                       000000              0000


Q ss_pred             ----cceeecCCCCEEEEEEccCCCEEEEEeC---C---CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEee
Q 010037          277 ----GQEFLAHEGSILTMKFSLDGQYLASGGE---D---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID  346 (519)
Q Consensus       277 ----~~~l~~H~~~I~~l~fspdg~~LaSgs~---D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (519)
                          ...+. +...-..|+|-.||.|+|+.+.   .   ..||||+-+ |.....-.....-..++.|.|.+. .++...
T Consensus       199 ~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q  275 (928)
T PF04762_consen  199 PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQ  275 (928)
T ss_pred             CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEE
Confidence                00112 3445567999999999998874   2   579999965 554333332222333445554442 122111


Q ss_pred             ccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE--E
Q 010037          347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--R  423 (519)
Q Consensus       347 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~--~  423 (519)
                      .            ......++++.....+..+ ....+......|..|+|++++ .|+....|. |.+|...+...-  +
T Consensus       276 ~------------~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq  341 (928)
T PF04762_consen  276 R------------LPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ  341 (928)
T ss_pred             E------------cCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence            1            1122344444433322211 111112345678999999999 777766554 999998876532  2


Q ss_pred             Ee--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC----CC----------------cEEe----------------
Q 010037          424 VF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RC----------------QVVD----------------  465 (519)
Q Consensus       424 ~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~----~~----------------~~~~----------------  465 (519)
                      .+  .....+..+.|+|.+...|...+.+|.+..++..    .+                ..+.                
T Consensus       342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~  421 (928)
T PF04762_consen  342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY  421 (928)
T ss_pred             EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence            22  2444566699999888888888887877666542    11                1111                


Q ss_pred             eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      .......|..++|++++..+++-..||.|.+|.....
T Consensus       422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            1224567999999999988999999999999986543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=1.7e-07  Score=96.57  Aligned_cols=171  Identities=19%  Similarity=0.282  Sum_probs=129.2

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCC
Q 010037          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (519)
Q Consensus       284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  363 (519)
                      .....|+.|+.+..|+|.||.||.+++..+.+...-.....       ++          .                ...
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------la----------a----------------~sn   60 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------LA----------A----------------ASN   60 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------cc----------c----------------ccc
Confidence            35678999999999999999999999998866542111100       00          0                000


Q ss_pred             eeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe---cCCCcEEEEEEeeC
Q 010037          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPV  439 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~---~h~~~V~~v~fsp~  439 (519)
                                    -..-+++.||+..|..+.|+.+. .|-|+..+|.|.+|-+-.+......   ...+.|.+++|+. 
T Consensus        61 --------------LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-  125 (1189)
T KOG2041|consen   61 --------------LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-  125 (1189)
T ss_pred             --------------cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-
Confidence                          01135689999999999999988 9999999999999998887655443   2667899999999 


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       440 d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      +|..++..-.||.|.+=.+...++....-.......+.|++|.+.++.+-..|.+++||..++
T Consensus       126 dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn  188 (1189)
T KOG2041|consen  126 DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGN  188 (1189)
T ss_pred             CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEeccccc
Confidence            999999888899888877766555432222333457899999999999999999999998764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.57  E-value=4.6e-05  Score=73.59  Aligned_cols=251  Identities=18%  Similarity=0.235  Sum_probs=150.9

Q ss_pred             cccceeecC-CCCeEEeeecCCe-EEEeeCCcccccc-ccccccceeecCCCCEEEEEEccCCCEEEEEe-----CCCcE
Q 010037          237 RHGSATLKP-GDHELTLGQRMRR-VRVHPVKKQSREL-SSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-----EDGTV  308 (519)
Q Consensus       237 ~~~~~~~sp-~g~~lasgs~dg~-I~vw~~~~~~~~~-~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-----~Dg~I  308 (519)
                      +...++.+| ....++.+-..|+ ..+||........ ......+-|.+|-      .||+||++|++.-     ..|.|
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVI   79 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEE
Confidence            344578889 5556677777776 5678877554321 1223445677774      8999999999863     35889


Q ss_pred             EEEecc-cCeeeceeeccCCCCceEEEeecCCCCeEEee-ccCC-ceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          309 RVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPID-VDKE-KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       309 ~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      -|||.. +.+.+.++..+.-.+.-+.+.++....+++.. +... ...+.+.-...-...+.+.+.....+.++....-.
T Consensus        80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence            999998 66777777777666666777666644333321 1111 00112222223333444444444333222111114


Q ss_pred             ccCCCeeEEEEcCCCeEEEEeC-CC-------cEEEEECCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEe-
Q 010037          386 GHSSEVLDLSWSKNGFLLSSSA-DK-------TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGS-  448 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~~L~sgs~-Dg-------~V~lWdl~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs-  448 (519)
                      -|...|..|++.++|.++.+.. .+       -|-+++-  ++.+..+.        ...++-+|++++ ++.++++.+ 
T Consensus       160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsP  236 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSP  236 (305)
T ss_pred             ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC-CCCEEEEECC
Confidence            4788999999999995555532 21       2444433  33333332        568999999999 777665544 


Q ss_pred             CCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       449 ~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      ..+.+.+||..+++++......+ +..++-.+++  ++..+..|.+.....
T Consensus       237 rGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~--f~~ssG~G~~~~~~~  284 (305)
T PF07433_consen  237 RGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG--FLVSSGQGQLIRLSP  284 (305)
T ss_pred             CCCEEEEEECCCCCEeeccccCc-eeeeeecCCc--eEEeCCCccEEEccC
Confidence            67899999999999986554433 4566666666  444444565444443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.56  E-value=9.9e-06  Score=74.96  Aligned_cols=114  Identities=12%  Similarity=0.104  Sum_probs=88.6

Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~--~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-  464 (519)
                      +.++++++++ ++++.+....|-.|.+...  ..+++.  ...+.=.+..|+. ....||++++||++.|||++..... 
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccch
Confidence            7889999999 8888899999999988653  223322  2455567888998 8889999999999999999975433 


Q ss_pred             -----eeccCCCceEEEEEeeCCC--EEEEEecCCeEEEEECCCCeee
Q 010037          465 -----DYTDIREIVSAVCYCPDGK--GGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       465 -----~~~~~~~~V~~v~~spdg~--~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                           ....|.+.+..+.|+|-|.  +|...-.-+.+.+-|+++++-.
T Consensus       240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence                 2456889999999998764  4555666788999999987543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.55  E-value=1.2e-05  Score=79.86  Aligned_cols=171  Identities=11%  Similarity=0.159  Sum_probs=132.0

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC-cEEEEecccCeeeceeec
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIEHERLDGFDV  324 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg-~I~iWd~~~~~~~~~~~~  324 (519)
                      +|.+++..+. |+..|.+......         .-.+|.+.|.-..+..++.-++.|..|| .+-|+|..+++.      
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~---------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------  394 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYS---------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------  394 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCee---------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------
Confidence            5667766655 4555544332111         1246888899888988888899999999 899999887763      


Q ss_pred             cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE
Q 010037          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL  403 (519)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~  403 (519)
                                                                               ..+...-+.|..+..+++| +++
T Consensus       395 ---------------------------------------------------------kr~e~~lg~I~av~vs~dGK~~v  417 (668)
T COG4946         395 ---------------------------------------------------------KRIEKDLGNIEAVKVSPDGKKVV  417 (668)
T ss_pred             ---------------------------------------------------------EEeeCCccceEEEEEcCCCcEEE
Confidence                                                                     2234455778999999999 788


Q ss_pred             EEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC----eEEEEEcCCCcEEeeccCCCceEEEEE
Q 010037          404 SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDIREIVSAVCY  478 (519)
Q Consensus       404 sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg----~V~iwd~~~~~~~~~~~~~~~V~~v~~  478 (519)
                      .+.....|.+.|+.++.....-. ..+-|+.+.||| +++++|-+--+|    .|+++|+.++++.........=.+-+|
T Consensus       418 vaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF  496 (668)
T COG4946         418 VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF  496 (668)
T ss_pred             EEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc
Confidence            88888899999999998755443 667899999999 999999877665    699999999999987777777778899


Q ss_pred             eeCCCEEEEEec
Q 010037          479 CPDGKGGIVGTM  490 (519)
Q Consensus       479 spdg~~l~sgs~  490 (519)
                      .|||++|.--+.
T Consensus       497 D~d~ryLYfLs~  508 (668)
T COG4946         497 DPDGRYLYFLSA  508 (668)
T ss_pred             CCCCcEEEEEec
Confidence            999998776553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.54  E-value=2.1e-07  Score=61.56  Aligned_cols=36  Identities=47%  Similarity=0.860  Sum_probs=33.9

Q ss_pred             cceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      .+++.+|.++|++|+|+|++++|++|+.|++|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.54  E-value=1.8e-05  Score=78.52  Aligned_cols=122  Identities=12%  Similarity=0.176  Sum_probs=101.9

Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCC-cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg-~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~  463 (519)
                      +|.+.|.-..+..++ -++.|..|| .+-|+|..+++..+....-+.|.++..+| +|.+++.+.....|.+.|+.++.+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe
Confidence            345556666665555 788899998 89999999999888878888999999999 999999999889999999999987


Q ss_pred             Eee-ccCCCceEEEEEeeCCCEEEEEecCC----eEEEEECCCCeeeecc
Q 010037          464 VDY-TDIREIVSAVCYCPDGKGGIVGTMTG----NCRFYDIKGMQIFDLS  508 (519)
Q Consensus       464 ~~~-~~~~~~V~~v~~spdg~~l~sgs~dg----~v~iwdl~~~~l~~~~  508 (519)
                      ... ....+.|+.++|+|+++++|-+--+|    .|++||+.+++++.+.
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            643 33456799999999999999877665    5899999999998764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.52  E-value=0.0002  Score=69.39  Aligned_cols=249  Identities=14%  Similarity=0.167  Sum_probs=148.7

Q ss_pred             ceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeccc
Q 010037          240 SATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIE  315 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~~  315 (519)
                      =++|+|++++|.++-.+   |.|..|.+....-.+..+.. +.+.++  +-+.++++++|++|+++.. -|.|.++-++.
T Consensus        44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~  120 (346)
T COG2706          44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-QTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQA  120 (346)
T ss_pred             eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-cccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence            37999999999886554   78888888764333332211 122332  2378999999999999876 47899999866


Q ss_pred             C-eeeceeec--cCCC----------CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037          316 H-ERLDGFDV--QDTD----------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (519)
Q Consensus       316 ~-~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (519)
                      . ......+.  +...          .....+.+.+ ..++..++..+++..              +......+......
T Consensus       121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~--------------y~~~dg~L~~~~~~  185 (346)
T COG2706         121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFL--------------YDLDDGKLTPADPA  185 (346)
T ss_pred             CCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEE--------------EEcccCcccccccc
Confidence            3 32221111  1111          1122222222 122333333333221              11111111111111


Q ss_pred             EeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC----eEEEEe-------cCCCcEEEEEEeeCCCCEEEEEeC
Q 010037          383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID----RCLRVF-------SHNNYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~----~~~~~~-------~h~~~V~~v~fsp~d~~~l~sgs~  449 (519)
                      .+ ........|.|+|++  ..+.+-.+++|.+|.....    +.++.+       ......-.|..+| +|++|.++..
T Consensus       186 ~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNR  263 (346)
T COG2706         186 EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNR  263 (346)
T ss_pred             cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecC
Confidence            12 345667899999999  3345567899999998873    222222       1456778899999 9999988764


Q ss_pred             -CCeEEEEEcCC--CcEE---eeccCCCceEEEEEeeCCCEEEEEecCC-eEEEEEC--CCCeeeecc
Q 010037          450 -DGKVRIWEVRR--CQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDI--KGMQIFDLS  508 (519)
Q Consensus       450 -Dg~V~iwd~~~--~~~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg-~v~iwdl--~~~~l~~~~  508 (519)
                       ...|.+|.+..  +++.   ....+........++|+|++|+++..++ .|.+|..  .+|+|-.+.
T Consensus       264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~  331 (346)
T COG2706         264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLG  331 (346)
T ss_pred             CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence             34788887754  3322   2334444578899999999999998865 4888865  467665543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.50  E-value=3.3e-05  Score=88.63  Aligned_cols=221  Identities=10%  Similarity=0.053  Sum_probs=131.4

Q ss_pred             ceeecCC-CCeEEeeecCCeEEEeeCCccccccccc--cc----cceeecCCCCEEEEEEccCCCEEEEEe-CCCcEEEE
Q 010037          240 SATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSL--YT----GQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVW  311 (519)
Q Consensus       240 ~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~--~~----~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~I~iW  311 (519)
                      .+++++. +.++++-+..++|++++...........  ..    ..--.++-.....|++.++++.|+.+. .++.|+++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i  651 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI  651 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence            4788875 5677777788999999976432110000  00    000011223457899999888665554 45678888


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      |+.++.. ..+.......               ...           .+....               ...    .-...
T Consensus       652 d~~~~~V-~tlag~G~~g---------------~~~-----------~gg~~~---------------~~~----~ln~P  685 (1057)
T PLN02919        652 DFVNETV-RTLAGNGTKG---------------SDY-----------QGGKKG---------------TSQ----VLNSP  685 (1057)
T ss_pred             ecCCCEE-EEEeccCccc---------------CCC-----------CCChhh---------------hHh----hcCCC
Confidence            8866542 1111000000               000           000000               000    01223


Q ss_pred             eEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEec---------------CCCcEEEEEEeeCCCC-EEEEEeCCCeE
Q 010037          392 LDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------HNNYVTSVAFNPVDDN-YFISGSIDGKV  453 (519)
Q Consensus       392 ~~l~~sp-~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---------------h~~~V~~v~fsp~d~~-~l~sgs~Dg~V  453 (519)
                      .+++++| ++ .+++.+.++.|++||..++.......               .-...+.|+|+| ++. ++++-+.++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeE
Confidence            5789999 45 66777788999999998775532111               012356799999 766 56666778999


Q ss_pred             EEEEcCCCcEEeecc--------------C--------CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          454 RIWEVRRCQVVDYTD--------------I--------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       454 ~iwd~~~~~~~~~~~--------------~--------~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      ++||+.++......+              .        -.....++++++|+++++-+.++.|++||..++.+..+
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti  840 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL  840 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            999998765321110              0        11246899999999888888899999999998876543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.50  E-value=0.00012  Score=74.16  Aligned_cols=247  Identities=13%  Similarity=0.150  Sum_probs=129.4

Q ss_pred             EEeeecC----CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC----CCcEEEEecccC-eeec
Q 010037          250 LTLGQRM----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----DGTVRVWKVIEH-ERLD  320 (519)
Q Consensus       250 lasgs~d----g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~----Dg~I~iWd~~~~-~~~~  320 (519)
                      +++|+..    +.|.+|+++.....+....   .+. -......|+++|++++|.++.+    +|.|..|++... ..+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~---~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~   77 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQ---TVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT   77 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEE---EEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEee---eec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE
Confidence            3445444    7899999854444343221   211 2344567899999999998876    578999998764 2222


Q ss_pred             eee-ccCCCCceEEEeecC-CCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037          321 GFD-VQDTDPSCLYFTINH-LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (519)
Q Consensus       321 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (519)
                      .+. ............... ...++......+.+.... +...  +.+..... .+...+..............++.++|
T Consensus        78 ~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~-l~~~--g~l~~~~~-~~~~~g~g~~~~rq~~~h~H~v~~~p  153 (345)
T PF10282_consen   78 LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP-LDDD--GSLGEVVQ-TVRHEGSGPNPDRQEGPHPHQVVFSP  153 (345)
T ss_dssp             EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE-ECTT--SEEEEEEE-EEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred             EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE-ccCC--cccceeee-ecccCCCCCcccccccccceeEEECC
Confidence            221 111122222222222 222333333222221111 1110  00000000 00000000000011234577899999


Q ss_pred             CC-eEEEE-eCCCcEEEEECCCCe--EEE----EecCCCcEEEEEEeeCCCCEEEEE-eCCCeEEEEEcC--CCcEE--e
Q 010037          399 NG-FLLSS-SADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVR--RCQVV--D  465 (519)
Q Consensus       399 ~~-~L~sg-s~Dg~V~lWdl~~~~--~~~----~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~iwd~~--~~~~~--~  465 (519)
                      ++ ++++. -....|.+|++....  ...    .+........+.|+| +++++++. -.+++|.++++.  ++...  .
T Consensus       154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~  232 (345)
T PF10282_consen  154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ  232 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence            98 55554 345679999997755  322    224667789999999 88777554 468899999998  44322  1


Q ss_pred             -e--c--cC--CCceEEEEEeeCCCEEEEEe-cCCeEEEEEC--CCCeee
Q 010037          466 -Y--T--DI--REIVSAVCYCPDGKGGIVGT-MTGNCRFYDI--KGMQIF  505 (519)
Q Consensus       466 -~--~--~~--~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl--~~~~l~  505 (519)
                       .  .  ..  ......|+++|||++|.++. ..+.|.+|++  .++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~  282 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT  282 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE
T ss_pred             EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE
Confidence             1  1  11  22578899999999988765 4678999999  334443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=4.5e-07  Score=86.38  Aligned_cols=123  Identities=11%  Similarity=0.246  Sum_probs=96.9

Q ss_pred             cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-----eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~-----~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      .++.|.++.|...+ ++..|+..|.|..+|++++     .+...+-|.+.|++++.-..++++|++.+.+|+|++||++.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            45678888888866 9999999999999999875     56777789999999998776788999999999999999987


Q ss_pred             CcE---E-eeccCCCceEE--EEEeeCCCEEEEEecCCeEEEEECCCCeeeeccc
Q 010037          461 CQV---V-DYTDIREIVSA--VCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLST  509 (519)
Q Consensus       461 ~~~---~-~~~~~~~~V~~--v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~  509 (519)
                      -++   + ++.+|-..-.-  +-..+....+++++.|-..|||.+..+++....+
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            554   3 45555433222  2234555678889999999999999999875433

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.46  E-value=7.4e-07  Score=100.38  Aligned_cols=162  Identities=19%  Similarity=0.284  Sum_probs=125.1

Q ss_pred             eecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeec
Q 010037          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (519)
Q Consensus       280 l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (519)
                      ++.|-..|.++.=+|...+.+||+.||.|++|....++.+..+.                                    
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r------------------------------------ 2247 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR------------------------------------ 2247 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee------------------------------------
Confidence            45566788899989988999999999999999987665432221                                    


Q ss_pred             cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEe
Q 010037          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN  437 (519)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fs  437 (519)
                                              ..| ...|+.+.|+.+| .+..+-.||.+.+|.+.. ++.... .|+...+.+.|-
T Consensus      2248 ------------------------t~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2248 ------------------------TAG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred             ------------------------ccC-cchhhhhhhcccCCceeeeccCCceeecccCC-cceeccccCCccccceeee
Confidence                                    112 2678888899988 899999999999999883 333333 388888888886


Q ss_pred             eCCCCEEEEEe---CCCeEEEEEcCCC--cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          438 PVDDNYFISGS---IDGKVRIWEVRRC--QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       438 p~d~~~l~sgs---~Dg~V~iwd~~~~--~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .   ..+++.+   .++.+.+||..-.  .-.....|.+.+++++|-|.-+.|++|+.+|.|++||++..++.+
T Consensus      2302 ~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2302 G---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred             e---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence            4   5566644   4788999997543  222238899999999999999999999999999999998766543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.45  E-value=2.7e-06  Score=78.35  Aligned_cols=107  Identities=17%  Similarity=0.234  Sum_probs=78.4

Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--
Q 010037          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--  464 (519)
Q Consensus       391 V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--  464 (519)
                      |.+++-+|..  .+++|+.||.|-|||.+.......+  .|+..++.|-|+|.++..|++++.||.+..||..+.-+-  
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~  261 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSIS  261 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEec
Confidence            8888888866  8889999999999999987443332  299999999999999999999999999999998852211  


Q ss_pred             -------eeccCCCceEE--------------E-EEeeCCCEEEEEecCCeEEEEE
Q 010037          465 -------DYTDIREIVSA--------------V-CYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       465 -------~~~~~~~~V~~--------------v-~~spdg~~l~sgs~dg~v~iwd  498 (519)
                             .|. ..+++.+              + .|.--|..|++|+.-+.|++++
T Consensus       262 ~~~s~~s~WL-sgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  262 NQASVISSWL-SGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             Cccccccccc-cCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence                   010 0111111              1 2333567788888888888775

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=3.7e-05  Score=79.56  Aligned_cols=117  Identities=13%  Similarity=0.029  Sum_probs=78.5

Q ss_pred             CeeEEEEcCCC-eE-EEEeCC--CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCc
Q 010037          390 EVLDLSWSKNG-FL-LSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQ  462 (519)
Q Consensus       390 ~V~~l~~sp~~-~L-~sgs~D--g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~  462 (519)
                      ......|+|+| .| ++.+.+  ..|.++|+.++...+...+........|+| |++.|+-.+. .+  .|.++|+.+++
T Consensus       234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCC
Confidence            34456799999 44 444433  568888988887655444444455678999 8887766553 23  68888998887


Q ss_pred             EEeeccCCCceEEEEEeeCCCEEEEEecC---------CeEEEEECCCCeeeeccc
Q 010037          463 VVDYTDIREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIKGMQIFDLST  509 (519)
Q Consensus       463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~d---------g~v~iwdl~~~~l~~~~~  509 (519)
                      ..........  ...|+|||+.|+.....         ..|.+.|+.++....+..
T Consensus       313 ~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~  366 (419)
T PRK04043        313 VEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA  366 (419)
T ss_pred             eEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence            6544332222  24899999998876654         368888998887665543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.43  E-value=2.5e-05  Score=88.11  Aligned_cols=240  Identities=13%  Similarity=0.183  Sum_probs=145.9

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEe----eCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVH----PVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw----~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iW  311 (519)
                      +.+.++.+-++...++.+..+|.|.+.    +......+.        ...-...|.+++||||+..||..+.+++|.+-
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m  147 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI--------VGSVDSGILAASWSPDEELLALVTGEGNLLLM  147 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE--------EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence            455667888899999999999999999    333222221        22346789999999999999999999988876


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE--EeCCccccccccceeEeeccCC
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV--VLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      . .+...+...........        ....+.+.++++..    .+.|+......  .-++...   ......+. +..
T Consensus       148 t-~~fd~i~E~~l~~~~~~--------~~~~VsVGWGkKeT----QF~Gs~gK~aa~~~~~p~~~---~~d~~~~s-~dd  210 (928)
T PF04762_consen  148 T-RDFDPISEVPLDSDDFG--------ESKHVSVGWGKKET----QFHGSAGKAAARQLRDPTVP---KVDEGKLS-WDD  210 (928)
T ss_pred             e-ccceEEEEeecCccccC--------CCceeeeccCcccC----ccCcchhhhhhhhccCCCCC---ccccCccc-cCC
Confidence            4 34444443333222111        01112222221111    11111111000  0001100   00011122 445


Q ss_pred             CeeEEEEcCCC-eEEEEeC------CCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEc
Q 010037          390 EVLDLSWSKNG-FLLSSSA------DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV  458 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~------Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~  458 (519)
                      .-..|+|-.|| ++++.+.      -..+|||+-+ |....+-. -.+--.+++|.| .|+++|+.-.   ...|.+|.-
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr  288 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER  288 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence            66789999999 8887764      2579999855 55444433 333446789999 9999988764   345777776


Q ss_pred             CCCcEEe----eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          459 RRCQVVD----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       459 ~~~~~~~----~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +.-+.-.    +......|..++|++|+..||+...|. |.+|-..+.+
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            5433222    224556799999999999999977654 9999998765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.42  E-value=7.8e-05  Score=72.13  Aligned_cols=186  Identities=15%  Similarity=0.255  Sum_probs=128.6

Q ss_pred             CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeccc--CeeeceeeccCCCCc
Q 010037          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIE--HERLDGFDVQDTDPS  330 (519)
Q Consensus       256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~I~iWd~~~--~~~~~~~~~~~~~~~  330 (519)
                      ++-|++|++......++..    .+..+.+.++-|+|+|++++|.++-.+   |.|..|.+..  |.. ..+.       
T Consensus        15 s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln-------   82 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLN-------   82 (346)
T ss_pred             CCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEee-------
Confidence            5679999998666555433    234677888999999999999998655   5566665543  221 0000       


Q ss_pred             eEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe-CC
Q 010037          331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-AD  408 (519)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs-~D  408 (519)
                                                                        .....  ..+...++.++++ +|+++. .-
T Consensus        83 --------------------------------------------------~~~~~--g~~p~yvsvd~~g~~vf~AnY~~  110 (346)
T COG2706          83 --------------------------------------------------RQTLP--GSPPCYVSVDEDGRFVFVANYHS  110 (346)
T ss_pred             --------------------------------------------------ccccC--CCCCeEEEECCCCCEEEEEEccC
Confidence                                                              00011  2233778899999 666665 45


Q ss_pred             CcEEEEECCC-Ce---EEEEecCCCc----------EEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCcEEe----eccC
Q 010037          409 KTVRLWQVGI-DR---CLRVFSHNNY----------VTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVD----YTDI  469 (519)
Q Consensus       409 g~V~lWdl~~-~~---~~~~~~h~~~----------V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~~~~~~----~~~~  469 (519)
                      +.|.++-++. |.   .+..+.|...          +....|.| ++++|++... -.+|.+|++..+++..    ....
T Consensus       111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~  189 (346)
T COG2706         111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP  189 (346)
T ss_pred             ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence            8899999876 33   3344456555          89999999 9999998775 3479999999876542    2345


Q ss_pred             CCceEEEEEeeCCCEEEEEec-CCeEEEEECCC--Ceeee
Q 010037          470 REIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKG--MQIFD  506 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~--~~l~~  506 (519)
                      ......|.|+|+|++..+.+. +++|-+|....  +++-.
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~  229 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE  229 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence            566789999999998776554 88999999876  44433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.38  E-value=9.7e-07  Score=58.30  Aligned_cols=37  Identities=46%  Similarity=0.934  Sum_probs=34.7

Q ss_pred             cceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEE
Q 010037          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ  415 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWd  415 (519)
                      +++..+.+|...|++|+|+|++ +|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4578899999999999999998 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.36  E-value=8.4e-06  Score=86.77  Aligned_cols=183  Identities=17%  Similarity=0.257  Sum_probs=135.5

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      ++..++.|+-...+..+|+...+..       +...-..+.|.-|+.  ++++|.+|...|+|.+-|..+.+        
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~-------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~--------  208 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKET-------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE--------  208 (1118)
T ss_pred             CCcceeecchhhheeeeecccceee-------eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc--------
Confidence            5567777777777888887744321       111112234655554  68899999999999999876554        


Q ss_pred             CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEE
Q 010037          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS  405 (519)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sg  405 (519)
                                                                            .++++.+|.+.|.++...-+ .|+++
T Consensus       209 ------------------------------------------------------~iht~~aHs~siSDfDv~GN-lLitC  233 (1118)
T KOG1275|consen  209 ------------------------------------------------------TIHTFDAHSGSISDFDVQGN-LLITC  233 (1118)
T ss_pred             ------------------------------------------------------eeeeeeccccceeeeeccCC-eEEEe
Confidence                                                                  36778889999988876533 78877


Q ss_pred             e---------CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE---cCCCc--EEeeccCCC
Q 010037          406 S---------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE---VRRCQ--VVDYTDIRE  471 (519)
Q Consensus       406 s---------~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd---~~~~~--~~~~~~~~~  471 (519)
                      +         .|.-|+|||++.-+.+..+.....-.-+.|+|.-...+++.+..|+..+-|   +.+..  +........
T Consensus       234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s  313 (1118)
T KOG1275|consen  234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS  313 (1118)
T ss_pred             ecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence            6         366799999999888777764444577889997778899999999999999   44432  223444555


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .+.+++++++|+.++.|..+|.|.+|--.
T Consensus       314 ~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  314 GISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             cceeEEecCCCceEEEecccCcEeeecCC
Confidence            69999999999999999999999999743

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=2.4e-07  Score=97.63  Aligned_cols=205  Identities=16%  Similarity=0.267  Sum_probs=136.5

Q ss_pred             ccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccC
Q 010037          270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK  349 (519)
Q Consensus       270 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (519)
                      .++.+...+.|..|+..-+|++|+-+.+.|+.|+..|.|+++++.+|......+.|...++.+.-..++...+....+..
T Consensus      1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC
Confidence            34555566778899999999999999999999999999999999999988777777776665554444433332221111


Q ss_pred             CceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-c-
Q 010037          350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S-  426 (519)
Q Consensus       350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~-  426 (519)
                                    ....+|....   ...+.+.|.    .-.++.|++.- .-+.|+.-..+.|||+.++.++.++ . 
T Consensus      1167 --------------PlsaLW~~~s---~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1167 --------------PLSALWDASS---TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred             --------------chHHHhcccc---ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc
Confidence                          0111122111   123334433    33567787765 4444555567999999999887773 2 


Q ss_pred             ---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          427 ---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       427 ---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                         .+..-++..|+| +..+++   .||.  +||++..+.++..+.-..-..-.|+|.|..++.-+     .|||+++-+
T Consensus      1226 ~~~~~y~~n~a~FsP-~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSP-CDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             chhhhhhccccccCC-CcceEe---eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHH
Confidence               333448899999 666665   3664  79999987664333222333447999999998876     589999876


Q ss_pred             eee
Q 010037          504 IFD  506 (519)
Q Consensus       504 l~~  506 (519)
                      +..
T Consensus      1295 lLh 1297 (1516)
T KOG1832|consen 1295 LLH 1297 (1516)
T ss_pred             HHh
Confidence            543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.33  E-value=1.9e-06  Score=89.42  Aligned_cols=201  Identities=15%  Similarity=0.223  Sum_probs=131.7

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceee--ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC
Q 010037          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD--VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (519)
Q Consensus       284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  361 (519)
                      .+++..+..+|.|+-+|.++.-| +.+-|+...-....+-  ...-.+....|++........+.....+.. .+.+..+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai-iwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh-hhhhhcC
Confidence            46788899999999999998876 4455654432222211  111122233444444333333333222211 1112222


Q ss_pred             CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEec-CCCcEEEEEEe
Q 010037          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFN  437 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~-h~~~V~~v~fs  437 (519)
                      .+..+              -..+.+|...|+++.|+|+.  .|++++.|..|..||+++. .++..+. -......|+|+
T Consensus       102 s~~aI--------------ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn  167 (1081)
T KOG0309|consen  102 SSNAI--------------EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN  167 (1081)
T ss_pred             Cccce--------------EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence            22221              34578999999999999988  9999999999999999985 3444443 44556789999


Q ss_pred             eCCCCEEEEEeCCCeEEEEEcCCCcE-E-eeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECCC
Q 010037          438 PVDDNYFISGSIDGKVRIWEVRRCQV-V-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       438 p~d~~~l~sgs~Dg~V~iwd~~~~~~-~-~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~~  501 (519)
                      -.+++.+|+ +....|++||++.+.. + ....|...|+.+.|..- -..+.+.+.||+|++||...
T Consensus       168 yk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  168 YKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             ccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            866666655 5567899999998643 3 46667788888888652 24578899999999999864

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.29  E-value=3e-06  Score=78.03  Aligned_cols=93  Identities=15%  Similarity=0.203  Sum_probs=73.2

Q ss_pred             CcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEEEEee-CCCE
Q 010037          409 KTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCP-DGKG  484 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~sp-dg~~  484 (519)
                      +..+.|+++..+.+..- .....|++++-+|...+++++|+.||.|-+||.++....  .+..|+..|+.+-|+| ++..
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence            34556665543322221 133459999999977888999999999999999987544  4788999999999999 6678


Q ss_pred             EEEEecCCeEEEEECCC
Q 010037          485 GIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       485 l~sgs~dg~v~iwdl~~  501 (519)
                      |++++.||.+.-||..+
T Consensus       239 Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeEecCCCcEEEEcCCC
Confidence            99999999999999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.25  E-value=0.0002  Score=73.81  Aligned_cols=112  Identities=18%  Similarity=0.316  Sum_probs=83.5

Q ss_pred             CCeeEEEEcCCC--eEEEE----eCCCcE----EEEECCCCeEE----EEecCCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          389 SEVLDLSWSKNG--FLLSS----SADKTV----RLWQVGIDRCL----RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       389 ~~V~~l~~sp~~--~L~sg----s~Dg~V----~lWdl~~~~~~----~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                      ....++.|+...  .+.|.    +.+|.+    .+|++..++..    ..+.....|.|.+++| +...|+.|+.||.|.
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII  284 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence            344667777644  44432    334443    45666554332    2335889999999999 999999999999999


Q ss_pred             EEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       455 iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      +||...+... .....-.++.++|+|+|..+++|+..|.+.+||+.-+
T Consensus       285 LyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  285 LYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999876433 3345566889999999999999999999999998744

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=5.6e-05  Score=79.83  Aligned_cols=170  Identities=15%  Similarity=0.262  Sum_probs=118.7

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      .+++++.|+-.|.|++.+.....         .+...|...      ..+|.|++||+.||+|.|-.+.+.+....+.  
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~---------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--  110 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNP---------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--  110 (846)
T ss_pred             hcceeeeccccceEEEEecCCcc---------ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe--
Confidence            45789999999999999876432         112234433      5689999999999999998887665432221  


Q ss_pred             CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC------
Q 010037          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN------  399 (519)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------  399 (519)
                                                                                   -..++.+++++|+      
T Consensus       111 -------------------------------------------------------------f~rpiksial~Pd~~~~~s  129 (846)
T KOG2066|consen  111 -------------------------------------------------------------FKRPIKSIALHPDFSRQQS  129 (846)
T ss_pred             -------------------------------------------------------------cCCcceeEEeccchhhhhh
Confidence                                                                         2356788888886      


Q ss_pred             CeEEEEeCCCcEEEEECC---CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC-C----
Q 010037          400 GFLLSSSADKTVRLWQVG---IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-E----  471 (519)
Q Consensus       400 ~~L~sgs~Dg~V~lWdl~---~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-~----  471 (519)
                      +.+++|+.-| +.++.-+   ....+..-...++|.++.|   .|+++|-++.+| |+|||+.+.+.+...... .    
T Consensus       130 k~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~  204 (846)
T KOG2066|consen  130 KQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP  204 (846)
T ss_pred             hheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc
Confidence            2899999988 7777532   2222222236789999999   578999988776 899999998877432211 1    


Q ss_pred             --ceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          472 --IVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       472 --~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                        -...+.|.++.+ |+.|-.| +|+|..++
T Consensus       205 e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  205 ELFPPHLHWQDEDR-LVIGWGD-SVKICSIK  233 (846)
T ss_pred             ccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence              234678877764 5555544 78888887

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.23  E-value=0.00011  Score=68.24  Aligned_cols=183  Identities=13%  Similarity=0.080  Sum_probs=121.3

Q ss_pred             EEeeecCCeEEEeeCCccccccccccccceeecCCC--CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCC
Q 010037          250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG--SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT  327 (519)
Q Consensus       250 lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~--~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~  327 (519)
                      +..++.|.++++..+.......         .-|..  .+.++.+++|++++++.+....|-.|.+.......       
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~---------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-------  194 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKF---------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-------  194 (344)
T ss_pred             eeeccCCcceeEEEEecCcccc---------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-------
Confidence            4456677888888776433211         12333  37889999999999999999999999875432100       


Q ss_pred             CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee-EeeccCCCeeEEEEcCCC-eEEEE
Q 010037          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKNG-FLLSS  405 (519)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~-~L~sg  405 (519)
                                                                           .. ........-.+..|+... .+|++
T Consensus       195 -----------------------------------------------------~~~~~a~t~D~gF~~S~s~~~~~FAv~  221 (344)
T KOG4532|consen  195 -----------------------------------------------------ENIYEAPTSDHGFYNSFSENDLQFAVV  221 (344)
T ss_pred             -----------------------------------------------------eeeEecccCCCceeeeeccCcceEEEE
Confidence                                                                 00 111223445677888888 99999


Q ss_pred             eCCCcEEEEECCCCeEEEEe------cCCCcEEEEEEeeCCCC--EEEEEeCCCeEEEEEcCCCcEEee--------ccC
Q 010037          406 SADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQVVDY--------TDI  469 (519)
Q Consensus       406 s~Dg~V~lWdl~~~~~~~~~------~h~~~V~~v~fsp~d~~--~l~sgs~Dg~V~iwd~~~~~~~~~--------~~~  469 (519)
                      ..||++.|||++........      .|++.+..+.|+| .+.  +|...-.-+.+.+-|+++.+-.+.        ..|
T Consensus       222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~  300 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH  300 (344)
T ss_pred             ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence            99999999999875433222      2899999999998 432  344444457899999998753321        122


Q ss_pred             C-CceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          470 R-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       470 ~-~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      . ..|...+|+.++..+.+.+.+ .+.=|++....
T Consensus       301 ~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  301 NTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             cccccccccccCCCcccccccch-hhheeeccccc
Confidence            2 347888888888777776654 34455554433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.23  E-value=9.9e-06  Score=77.45  Aligned_cols=152  Identities=15%  Similarity=0.226  Sum_probs=105.7

Q ss_pred             eeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCce
Q 010037          252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC  331 (519)
Q Consensus       252 sgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~  331 (519)
                      +.+.+..|-+-++..+..        +.|. -.+.|.++.|...++++..|..+|.|...|++....-.        .  
T Consensus       229 s~G~sqqv~L~nvetg~~--------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~--------~--  289 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVETGHQ--------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN--------G--  289 (425)
T ss_pred             cccccceeEEEEeecccc--------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC--------C--
Confidence            334456677777654321        1223 56789999999989999999999999999997652100        0  


Q ss_pred             EEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC-CC-eEEEEeCCC
Q 010037          332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADK  409 (519)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~-~L~sgs~Dg  409 (519)
                                                                     .+.+. --|...|+++..-. ++ +|++.+++|
T Consensus       290 -----------------------------------------------~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~g  321 (425)
T KOG2695|consen  290 -----------------------------------------------WCAQR-LYHDSSVTSLQILQFSQQKLMASDMTG  321 (425)
T ss_pred             -----------------------------------------------cceEE-EEcCcchhhhhhhccccceEeeccCcC
Confidence                                                           00111 12778888888776 44 999999999


Q ss_pred             cEEEEECCCCeE---EEEec-CCCcE--EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCC
Q 010037          410 TVRLWQVGIDRC---LRVFS-HNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE  471 (519)
Q Consensus       410 ~V~lWdl~~~~~---~~~~~-h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~  471 (519)
                      +|++||++.-++   +..+. |-..-  .-+-.+| ....+++++.|...|||.++.++++.......
T Consensus       322 kikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  322 KIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            999999997777   55553 42221  2233455 56788889999999999999999986554443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.19  E-value=0.0034  Score=60.20  Aligned_cols=223  Identities=15%  Similarity=0.122  Sum_probs=128.9

Q ss_pred             eeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEecccCee
Q 010037          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS-LDGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       241 ~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs-pdg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      .+|.+ ++.++++-...+.|..|+........        +..  .....+.+. +++. |+.+... .+.++|+.+++.
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------~~~--~~~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~   72 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------IDL--PGPNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKV   72 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------EES--SSEEEEEEECTTSE-EEEEETT-CEEEEETTTTEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------Eec--CCCceEEEEccCCE-EEEEEcC-ceEEEecCCCcE
Confidence            57787 77777777788999999987654332        111  126778888 6655 4455554 456669888865


Q ss_pred             eceeeccC---CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          319 LDGFDVQD---TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       319 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      ........   ...............++............      ..+.+..++.. ..     +..+...-...+.|+
T Consensus        73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~------~~g~v~~~~~~-~~-----~~~~~~~~~~pNGi~  140 (246)
T PF08450_consen   73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGI------DPGSVYRIDPD-GK-----VTVVADGLGFPNGIA  140 (246)
T ss_dssp             EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCG------GSEEEEEEETT-SE-----EEEEEEEESSEEEEE
T ss_pred             EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccc------cccceEEECCC-Ce-----EEEEecCcccccceE
Confidence            54444321   11122222222233333332211110000      00333333333 11     222233345678999


Q ss_pred             EcCCC-eE-EEEeCCCcEEEEECCCCe--E--EEEe---cCC-CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          396 WSKNG-FL-LSSSADKTVRLWQVGIDR--C--LRVF---SHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       396 ~sp~~-~L-~sgs~Dg~V~lWdl~~~~--~--~~~~---~h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      |+|++ .| ++-+..+.|..+++....  .  ...+   ... ...-.+++.. ++++.++....+.|.++|.. ++++.
T Consensus       141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~  218 (246)
T PF08450_consen  141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLR  218 (246)
T ss_dssp             EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred             ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEE
Confidence            99999 44 567788889999986322  1  1222   222 3588899999 89998888889999999998 77664


Q ss_pred             -eccCCCceEEEEEe-eCCCEEEEEe
Q 010037          466 -YTDIREIVSAVCYC-PDGKGGIVGT  489 (519)
Q Consensus       466 -~~~~~~~V~~v~~s-pdg~~l~sgs  489 (519)
                       .......+++++|. |+.+.|.+.+
T Consensus       219 ~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  219 EIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence             33333689999994 6766665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.16  E-value=8.6e-06  Score=76.75  Aligned_cols=162  Identities=17%  Similarity=0.308  Sum_probs=106.5

Q ss_pred             ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeecc
Q 010037          281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (519)
Q Consensus       281 ~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (519)
                      .+|.--|+++.|+.|...++++ .|-.|.+|++.-.....                                        
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sF----------------------------------------  207 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSF----------------------------------------  207 (460)
T ss_pred             ccceeEeeeeeecCchheeeec-cceeeeeccccccCCce----------------------------------------
Confidence            4677788899999888888776 56788999874322100                                        


Q ss_pred             CCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE----EEEec--------
Q 010037          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC----LRVFS--------  426 (519)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~----~~~~~--------  426 (519)
                          .++-..+          +.+..-..-|++..|+|..  .+.-.+..|.|++-|++....    .+.+.        
T Consensus       208 ----nIVDiKP----------~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~  273 (460)
T COG5170         208 ----NIVDIKP----------HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV  273 (460)
T ss_pred             ----EEEeccC----------ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence                0000000          1111223457888899976  677777889999999984321    11221        


Q ss_pred             -----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-EEeec-c------------CCCce---EEEEEeeCCCE
Q 010037          427 -----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYT-D------------IREIV---SAVCYCPDGKG  484 (519)
Q Consensus       427 -----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-~~~~~-~------------~~~~V---~~v~~spdg~~  484 (519)
                           ....|..+.|+| +++|+++-+. -+|+|||++..+ ++... -            ..+.|   ..+.|+-|.+.
T Consensus       274 ~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~  351 (460)
T COG5170         274 DFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKH  351 (460)
T ss_pred             hhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccc
Confidence                 234678899999 9999998765 489999998743 33211 1            12223   34788889999


Q ss_pred             EEEEecCCeEEEEEC
Q 010037          485 GIVGTMTGNCRFYDI  499 (519)
Q Consensus       485 l~sgs~dg~v~iwdl  499 (519)
                      +++|+.....-||-+
T Consensus       352 v~sgsy~NNfgiyp~  366 (460)
T COG5170         352 VLSGSYSNNFGIYPT  366 (460)
T ss_pred             ccccccccceeeecc
Confidence            999999888888864

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.14  E-value=0.00074  Score=69.20  Aligned_cols=231  Identities=16%  Similarity=0.114  Sum_probs=125.0

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      ++..+++++.+|.+..+|...++..-. ...       .+.+.+.-.. .+..++.++.+|.|..||..+++.+..+...
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~-------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  174 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWR-AKL-------SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV  174 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeee-ecc-------CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC
Confidence            467788888899999999875553221 111       1122211111 2456777788999999999999877665543


Q ss_pred             CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc-ceeEeeccC-----CCee-EEEEcC
Q 010037          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK-PLHEFQGHS-----SEVL-DLSWSK  398 (519)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~h~-----~~V~-~l~~sp  398 (519)
                      ......   . .....+.   .+ .     ..+.+..++.+..++......... ......+..     ..+. ...+ .
T Consensus       175 ~~~~~~---~-~~~sp~~---~~-~-----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~  240 (377)
T TIGR03300       175 TPALTL---R-GSASPVI---AD-G-----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-D  240 (377)
T ss_pred             CCceee---c-CCCCCEE---EC-C-----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-E
Confidence            221100   0 0000000   00 0     011112222333333222111000 000000000     0000 0111 1


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec-cCCC-ceEEE
Q 010037          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIRE-IVSAV  476 (519)
Q Consensus       399 ~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~-~V~~v  476 (519)
                      ++.++.++.++.+..||..+++.+-....... ....  . .+..++.++.+|.|..+|..+++.+... .... ...+.
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp  316 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPA--V-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP  316 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCce--E-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence            34788888999999999999987766553221 1222  2 4567888889999999999999877322 2221 22222


Q ss_pred             EEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          477 CYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       477 ~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ..  .+..|++++.+|.|+++|..+++++
T Consensus       317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       317 AV--VGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             EE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            22  4668999999999999999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.13  E-value=0.0007  Score=64.29  Aligned_cols=215  Identities=13%  Similarity=0.069  Sum_probs=117.5

Q ss_pred             CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEe
Q 010037          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT  335 (519)
Q Consensus       256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~  335 (519)
                      +|+|..+|...++..-. ..    +..-.....+. ..+++.++++++.++.|..||..+++.+............. . 
T Consensus         2 ~g~l~~~d~~tG~~~W~-~~----~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~-   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWS-YD----LGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-V-   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEE-EE----CSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-E-
T ss_pred             CCEEEEEECCCCCEEEE-EE----CCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-e-
Confidence            57777787754443211 11    11001222222 23356677888899999999999999887776633211111 0 


Q ss_pred             ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-ecc----C-CCeeEEEEcCCCeEEEEeCCC
Q 010037          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGH----S-SEVLDLSWSKNGFLLSSSADK  409 (519)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h----~-~~V~~l~~sp~~~L~sgs~Dg  409 (519)
                       .....++...               .++.+..++......    +... ...    . .......+. .+.++.+..++
T Consensus        74 -~~~~~v~v~~---------------~~~~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g  132 (238)
T PF13360_consen   74 -VDGGRVYVGT---------------SDGSLYALDAKTGKV----LWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSG  132 (238)
T ss_dssp             -EETTEEEEEE---------------TTSEEEEEETTTSCE----EEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCS
T ss_pred             -eccccccccc---------------ceeeeEecccCCcce----eeeeccccccccccccccCceEe-cCEEEEEeccC
Confidence             0011111111               112333333222111    2211 111    0 111122222 33888888899


Q ss_pred             cEEEEECCCCeEEEEecCCC-c----------E-EEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCcEEeeccCCCceEEE
Q 010037          410 TVRLWQVGIDRCLRVFSHNN-Y----------V-TSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVDYTDIREIVSAV  476 (519)
Q Consensus       410 ~V~lWdl~~~~~~~~~~h~~-~----------V-~~v~fsp~d~~~l~sgs~Dg~-V~iwd~~~~~~~~~~~~~~~V~~v  476 (519)
                      .|..+|+++|+.+....-.. .          + ..+.+.  ++ .++.++.++. +.+ |+.+++.+ +......+.. 
T Consensus       133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~-  206 (238)
T PF13360_consen  133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYS-  206 (238)
T ss_dssp             EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECE-
T ss_pred             cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccC-
Confidence            99999999999987775211 1          1 222222  34 6777777775 555 99999977 4333233222 


Q ss_pred             EEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          477 CYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       477 ~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ...+++..|++++.++.+..||+++++..
T Consensus       207 ~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  207 LPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            24567788888889999999999999863

...

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.13  E-value=0.00019  Score=75.46  Aligned_cols=237  Identities=12%  Similarity=0.081  Sum_probs=146.6

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC------C------CEEEEEeCCC
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------G------QYLASGGEDG  306 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g------~~LaSgs~Dg  306 (519)
                      +++.|+|.| ++|.|+. ..|.|-|..       ..+..+.+..|+..|+.+.|.|-      +      -.||++...|
T Consensus        19 ~A~Dw~~~G-LiAygsh-slV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGSH-SLVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccCccc-eEEEecC-ceEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            346788887 6666654 457777755       44556678889999999999872      1      2577788889


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      .|.+||+..+..+..+..+......++|.+.....            +...+.......+.+|+.....    .+-+...
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S------------rd~LlaIh~ss~lvLwntdtG~----k~Wk~~y  153 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS------------RDVLLAIHGSSTLVLWNTDTGE----KFWKYDY  153 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc------------hheeEEecCCcEEEEEEccCCc----eeecccc
Confidence            99999999998888888888877777776665332            1111222333445555443321    1222233


Q ss_pred             cCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-------CeEEEEec-CCC-------------------------cE
Q 010037          387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-------DRCLRVFS-HNN-------------------------YV  431 (519)
Q Consensus       387 h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~-------~~~~~~~~-h~~-------------------------~V  431 (519)
                      ......|+.+.|-.  .+..-+..|.|.+-+.-.       ++..+.-. |++                         +.
T Consensus       154 s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~  233 (1062)
T KOG1912|consen  154 SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYC  233 (1062)
T ss_pred             CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHH
Confidence            33455667777754  454444555555554321       11111111 211                         12


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCC--EEEEEecCCeEEEEECCC
Q 010037          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK--GGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       432 ~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~--~l~sgs~dg~v~iwdl~~  501 (519)
                      ..++|+| .-+-++-......+.|+|++-..++. ..-..+.+.-+.+-|+++  .|.+...||.+.||--+.
T Consensus       234 a~faf~p-~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  234 AQFAFSP-HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             HhhhcCh-hhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            2356788 43333344457789999998877774 333445566677777764  688999999999997654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.08  E-value=2.5e-06  Score=90.22  Aligned_cols=217  Identities=17%  Similarity=0.222  Sum_probs=132.1

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC--cE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg--~I  308 (519)
                      +.-+...-.|++|+-+.++|++|+..|.|+++++..+..+-+       ..+|..+|+-+.-+.+|..+++.+.-.  -.
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------ccccccccccccccCCcceeeeeccccCchH
Confidence            333445556799999999999999999999999987766543       578999999999999998777665432  47


Q ss_pred             EEEeccc-CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          309 RVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       309 ~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      .+|++.+ +.....+..    -.++.|.......                +.+.......+|+..+.....+.+....+.
T Consensus      1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r----------------~~gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFR----------------ALGTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred             HHhccccccCccccccc----cceeehhhhHHHH----------------HhcccccceEEEecccCcHHHHhcCcchhh
Confidence            7899854 222222221    1222222221111                112222334444444432222212112222


Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec
Q 010037          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (519)
Q Consensus       388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~  467 (519)
                      ...-++..|+|...|+.  +||  .+||++..+.++.|..-..--.=.|+| +++.++..+.     |||+++.++++..
T Consensus      1230 ~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP-~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHP-SGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred             hhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhheecccccccC-CCceEEeech-----hhhhHHHHHHhcC
Confidence            33347788999884433  344  589999998888886322333446999 8888888663     8999998776432


Q ss_pred             cCCCceEEEEEeeCCCEE
Q 010037          468 DIREIVSAVCYCPDGKGG  485 (519)
Q Consensus       468 ~~~~~V~~v~~spdg~~l  485 (519)
                      ..-+ -..+.|+..|..+
T Consensus      1300 P~Ld-qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1300 PSLD-QCAVTFNSTGDVM 1316 (1516)
T ss_pred             cccc-ceEEEeccCccch
Confidence            2211 1456666666543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=8.3e-05  Score=78.08  Aligned_cols=250  Identities=14%  Similarity=0.111  Sum_probs=146.1

Q ss_pred             CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc---CC-CEEEEEeCCCcEEEEecccCeeecee
Q 010037          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DG-QYLASGGEDGTVRVWKVIEHERLDGF  322 (519)
Q Consensus       247 g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg-~~LaSgs~Dg~I~iWd~~~~~~~~~~  322 (519)
                      .-+||++...|+|.+||.......       ..+..|.++|..++|-+   +. ..|+.-..-.+|.+|+..+|+.....
T Consensus        79 ~lliAsaD~~GrIil~d~~~~s~~-------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~  151 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLASVI-------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY  151 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhhhhh-------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence            446788889999999998744432       23677899999999977   33 45666666779999999999988888


Q ss_pred             eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC---CCeeEEEeCCccccc--cccceeEeeccCC--------
Q 010037          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS---SDLTCVVLPPKVFRL--LEKPLHEFQGHSS--------  389 (519)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~~--~~~~~~~~~~h~~--------  389 (519)
                      ........|+.+.+-....+......+. ......+..+   ..+....+....-.+  .+....+-..++.        
T Consensus       152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~-vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fi  230 (1062)
T KOG1912|consen  152 DYSHEILSCFRVDPFDSRHFCVLGSKGF-VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFI  230 (1062)
T ss_pred             ccCCcceeeeeeCCCCcceEEEEccCce-EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHH
Confidence            7777767777666655544443332221 1111111111   011111110000000  0000000000100        


Q ss_pred             -CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCc---
Q 010037          390 -EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQ---  462 (519)
Q Consensus       390 -~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~~~---  462 (519)
                       ....++|+|.- .++-......+.|+|++-..++.... ..+.+.-+.|-|. ....|.++-.||.+.||-.+...   
T Consensus       231 ty~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f  310 (1062)
T KOG1912|consen  231 TYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEF  310 (1062)
T ss_pred             HHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccc
Confidence             01235678865 44445566789999999999998887 5556666777772 23478889999999999765411   


Q ss_pred             -------------EE---eeccCCCceEEEEEeeC-CCEEEEEecCCeEEEEECCCCeee
Q 010037          463 -------------VV---DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       463 -------------~~---~~~~~~~~V~~v~~spd-g~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                                   ..   .... ...+...+..|. ...+++--.+|.+.+|.+++|++-
T Consensus       311 ~~~~~~l~~dl~~Q~~~vr~m~-~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~  369 (1062)
T KOG1912|consen  311 KKPNASLSMDLGEQVHVVRPME-EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH  369 (1062)
T ss_pred             cccchhhccccccceEEEeech-hcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence                         11   1111 112233344454 344555566888999999977653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.04  E-value=1.2e-06  Score=89.74  Aligned_cols=191  Identities=20%  Similarity=0.389  Sum_probs=125.9

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEe----CCCcEEEEecccCeeec
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG----EDGTVRVWKVIEHERLD  320 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs----~Dg~I~iWd~~~~~~~~  320 (519)
                      +...+++|..+|.|.+-........     ......+|..+.++++|++ |.+.||+|-    .|-.+.|||+.++-...
T Consensus        69 d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP  143 (783)
T KOG1008|consen   69 DRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP  143 (783)
T ss_pred             chhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence            3467889999999999887643322     1123457888999999998 666777763    35679999997652100


Q ss_pred             eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee-ccCCCeeEEEEcCC
Q 010037          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKN  399 (519)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~  399 (519)
                           ..   .                                                +.  +. +......+++|..+
T Consensus       144 -----ke---~------------------------------------------------~~--fs~~~l~gqns~cwlrd  165 (783)
T KOG1008|consen  144 -----KE---S------------------------------------------------PL--FSSSTLDGQNSVCWLRD  165 (783)
T ss_pred             -----cc---c------------------------------------------------cc--cccccccCccccccccC
Confidence                 00   0                                                00  00 11233447888877


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE-cCCCc-EEe-----eccCCC
Q 010037          400 G-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQ-VVD-----YTDIRE  471 (519)
Q Consensus       400 ~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd-~~~~~-~~~-----~~~~~~  471 (519)
                      . ++++|...+.++++|++........-....|..+...|..++|+++-. ||.|.+|| .++-+ ++.     ......
T Consensus       166 ~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~  244 (783)
T KOG1008|consen  166 TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPK  244 (783)
T ss_pred             cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCccc
Confidence            7 778888888999999984433222224557888899998889998876 99999999 44322 221     122233


Q ss_pred             ceEEEEEeeCCCE-EEEE-ecCCeEEEEECC
Q 010037          472 IVSAVCYCPDGKG-GIVG-TMTGNCRFYDIK  500 (519)
Q Consensus       472 ~V~~v~~spdg~~-l~sg-s~dg~v~iwdl~  500 (519)
                      .+..++|+|.... +++. -..++|++||+.
T Consensus       245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  245 QLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            5899999995433 3333 445789999986

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.95  E-value=0.00026  Score=72.93  Aligned_cols=95  Identities=18%  Similarity=0.294  Sum_probs=74.3

Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc--
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--  462 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~--  462 (519)
                      .....|.|++++|+. .|+.|+.||.|.+||...+..... ...-..+.++||| +|.+|++|+.-|.|.+||+.-..  
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence            367889999999998 999999999999999987754433 4566789999999 99999999999999999975321  


Q ss_pred             ------------EEe---eccCCCceEEEEEeeCC
Q 010037          463 ------------VVD---YTDIREIVSAVCYCPDG  482 (519)
Q Consensus       463 ------------~~~---~~~~~~~V~~v~~spdg  482 (519)
                                  .+.   +..+...+..+.|.+..
T Consensus       335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             eeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence                        111   23345556778888543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.0015  Score=69.94  Aligned_cols=202  Identities=15%  Similarity=0.228  Sum_probs=116.5

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCc-----EEEEecc
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGT-----VRVWKVI  314 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~-----I~iWd~~  314 (519)
                      -++++++..++.|+.+|.|.+.+-.        +...+.+++|...|...-|.-++ .+|++.++|+.     |+||++.
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s--------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS--------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc--------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            3688999999999999999888743        22224567777774333344444 78999888765     8999986


Q ss_pred             cCeeeceeeccCCCCceE---EEee----cCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          315 EHERLDGFDVQDTDPSCL---YFTI----NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      .-+.-       ..+.|+   ...+    ........+.+...   ....+.|-.++.+..+.....+-.+.........
T Consensus       101 k~~~n-------~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~---l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~  170 (933)
T KOG2114|consen  101 KVDKN-------NSPQCLYEHRIFTIKNPTNPSPASSLAVSED---LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG  170 (933)
T ss_pred             ccCCC-------CCcceeeeeeeeccCCCCCCCcceEEEEEcc---ccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence            43210       001111   0000    01111111111111   1122233445555555444443333333333445


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-EEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~-~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      ..+|+.+++..++ .++-...-..|.+|.+....+ +.++. |...++|..|++ ....|++++ +.-|.+|+.....
T Consensus       171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             CCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEec-CceEEEEcCCCcc
Confidence            6799999999888 323233345799999985553 33344 788999999998 444344444 3469999987544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.87  E-value=0.014  Score=58.59  Aligned_cols=62  Identities=11%  Similarity=0.030  Sum_probs=43.1

Q ss_pred             CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC----------CCcEEEEecccCeeeceeeccC
Q 010037          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----------DGTVRVWKVIEHERLDGFDVQD  326 (519)
Q Consensus       257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~----------Dg~I~iWd~~~~~~~~~~~~~~  326 (519)
                      ++|.|.|....+..       ..+..-..+- .+ ++|||+.|+.+..          +..|.+||+.+.+....+..+.
T Consensus        27 ~~v~ViD~~~~~v~-------g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAGRVL-------GMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE   97 (352)
T ss_pred             ceEEEEECCCCEEE-------EEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence            88999998753321       1222222222 24 9999998877655          7899999999999988887654


Q ss_pred             C
Q 010037          327 T  327 (519)
Q Consensus       327 ~  327 (519)
                      .
T Consensus        98 ~   98 (352)
T TIGR02658        98 G   98 (352)
T ss_pred             C
Confidence            4

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.87  E-value=0.0024  Score=60.32  Aligned_cols=191  Identities=13%  Similarity=0.137  Sum_probs=103.3

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCcccccccccccccee-ecCCCCEEEEEEccCC------CEEEEEeCCCcEEEEec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDG------QYLASGGEDGTVRVWKV  313 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg------~~LaSgs~Dg~I~iWd~  313 (519)
                      ++|+||+.+||.+...|+|+|+|+.....-  .+.....+ ..-..+|-.|.|.+..      ..|+.-...|.++-|-+
T Consensus        49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf--~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   49 LAWSPDCTLLAYAESTGTIRVFDLMGSELF--VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV  126 (282)
T ss_pred             EEECCCCcEEEEEcCCCeEEEEecccceeE--EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence            699999999999999999999998753321  11111111 1234678888886532      24666778888888876


Q ss_pred             ccC-----eeeceeecc---CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          314 IEH-----ERLDGFDVQ---DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       314 ~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      ..+     +....+...   ...+..+.+.+.+.-.++.. ..... ...                            -.
T Consensus       127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG-~~~~~-~~~----------------------------s~  176 (282)
T PF15492_consen  127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG-CEQNQ-DGM----------------------------SK  176 (282)
T ss_pred             EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec-cCCCC-Ccc----------------------------cc
Confidence            432     222233322   22333444444432111111 00000 000                            00


Q ss_pred             ccCCCeeEEEEcCCC---eEEEEeCCCc------EEEEECCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037          386 GHSSEVLDLSWSKNG---FLLSSSADKT------VRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~---~L~sgs~Dg~------V~lWdl~~~~~~~~-~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i  455 (519)
                      +....+++-..-.+.   ..++...|+.      -.+|.+-+.+.... -.....|..+..+| |+..||+...+|.|.+
T Consensus       177 a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsL  255 (282)
T PF15492_consen  177 ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSL  255 (282)
T ss_pred             ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEE
Confidence            111122222222221   3333333322      23444332222111 12567899999999 9999999999999999


Q ss_pred             EEcCCCcEE
Q 010037          456 WEVRRCQVV  464 (519)
Q Consensus       456 wd~~~~~~~  464 (519)
                      |++.+-++.
T Consensus       256 W~iPsL~~~  264 (282)
T PF15492_consen  256 WEIPSLRLQ  264 (282)
T ss_pred             EecCcchhh
Confidence            999886655

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.00057  Score=66.96  Aligned_cols=243  Identities=12%  Similarity=0.105  Sum_probs=127.6

Q ss_pred             EeecccceeecCCCC-eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCcEEEE
Q 010037          234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVW  311 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~I~iW  311 (519)
                      +-..+..++|+|... ++..++.+..|+|.|+.....       ...+..| ..|++++|.-|. ++|..|-.+|.|.||
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-------vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-------VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCceEEEEeccccee-------eeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            334556689999988 778899999999999985443       2345666 789999998865 578888899999999


Q ss_pred             ecccCeeec-eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc---ccceeEe-ec
Q 010037          312 KVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL---EKPLHEF-QG  386 (519)
Q Consensus       312 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~-~~  386 (519)
                      |++..+-.. .+.............+-..+.++..    +...           .........|.+.   +.+...+ .+
T Consensus       264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~----gglL-----------v~~lt~l~f~ei~~s~~~~p~vlele  328 (463)
T KOG1645|consen  264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTS----GGLL-----------VFALTVLQFYEIVFSAECLPCVLELE  328 (463)
T ss_pred             EccCCCchHhhhhhhhccCcceeecccCccccccc----cceE-----------EeeehhhhhhhhhccccCCCcccccC
Confidence            997654321 1211111111111111111111100    0000           0000000011110   0111111 12


Q ss_pred             cCCCeeEEEEcCCC--eEEEEeCCCc---EE---E-EECCCCeEEEEec--C-CCc-----EEEEEEeeCCCCEEE-EEe
Q 010037          387 HSSEVLDLSWSKNG--FLLSSSADKT---VR---L-WQVGIDRCLRVFS--H-NNY-----VTSVAFNPVDDNYFI-SGS  448 (519)
Q Consensus       387 h~~~V~~l~~sp~~--~L~sgs~Dg~---V~---l-Wdl~~~~~~~~~~--h-~~~-----V~~v~fsp~d~~~l~-sgs  448 (519)
                      ..+...++++++..  .|+|.-.+.+   ++   . -|-..|.++....  + ..+     -+...+.+.+.++++ .|.
T Consensus       329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd  408 (463)
T KOG1645|consen  329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD  408 (463)
T ss_pred             CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC
Confidence            34555666666643  4444332211   11   1 0111222221111  1 111     111223332445554 444


Q ss_pred             CCCeEEEEEcCCCcEEeeccCCCceEEEEEee-CC-CEEEEEecCCeEEEEECC
Q 010037          449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DG-KGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       449 ~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg-~~l~sgs~dg~v~iwdl~  500 (519)
                      .-..+.+||..+..+++......+|..++... +| .+|++-+ |..++||..+
T Consensus       409 ~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  409 STNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             CcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence            56789999999999998888889999988765 33 3555544 6688998754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.83  E-value=0.003  Score=64.68  Aligned_cols=225  Identities=14%  Similarity=0.078  Sum_probs=123.9

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      .+..+++++.+|.|..+|...++..-. ......+   ..   ...  .++..++.++.+|.+..+|..+++.+......
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~-~~~~~~~---~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  134 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWR-VDLDERL---SG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS  134 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeee-ecCCCCc---cc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence            466888888899999999775553211 1111001   11   112  24667888889999999999999877655433


Q ss_pred             CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe-----eEEEEcCCC
Q 010037          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV-----LDLSWSKNG  400 (519)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-----~~l~~sp~~  400 (519)
                      .........             ...     ..+....++.+..++......    +-.+......+     ...... ++
T Consensus       135 ~~~~~~p~v-------------~~~-----~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~~~~~~~~sp~~~-~~  191 (377)
T TIGR03300       135 SEVLSPPLV-------------ANG-----LVVVRTNDGRLTALDAATGER----LWTYSRVTPALTLRGSASPVIA-DG  191 (377)
T ss_pred             ceeecCCEE-------------ECC-----EEEEECCCCeEEEEEcCCCce----eeEEccCCCceeecCCCCCEEE-CC
Confidence            211000000             000     011122334444444433221    11111110000     011111 34


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecCCC-----c---EEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCC
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNN-----Y---VTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE  471 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~-----~---V~~v~fsp-~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~  471 (519)
                      .++.+..++.+..+|+.+++.+-......     .   ...+.-+| ..+..++.++.+|.++.||..+++.+.......
T Consensus       192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~  271 (377)
T TIGR03300       192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS  271 (377)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC
Confidence            77888889999999999998765443110     0   00111111 134577888889999999999998774332221


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                       ....  ..++..+++++.+|.+..+|..+++++
T Consensus       272 -~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~  302 (377)
T TIGR03300       272 -YQGP--AVDDNRLYVTDADGVVVALDRRSGSEL  302 (377)
T ss_pred             -ccCc--eEeCCEEEEECCCCeEEEEECCCCcEE
Confidence             1122  235667888889999999999888643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.79  E-value=0.0081  Score=57.53  Aligned_cols=192  Identities=15%  Similarity=0.194  Sum_probs=114.6

Q ss_pred             EEEEcc-CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE
Q 010037          289 TMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV  367 (519)
Q Consensus       289 ~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  367 (519)
                      ++.|.+ ++.++++--..+.|..|+..++.... +....  +..+.+.... ..++.......                .
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~~----------------~   63 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGGI----------------A   63 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTCE----------------E
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCce----------------E
Confidence            568888 77777777778999999998776432 22222  3333333222 22222221111                1


Q ss_pred             EeCCccccccccceeEee--c-cCCCeeEEEEcCCC-eEEEEeCC--------CcEEEEECCCCeEEEEecCCCcEEEEE
Q 010037          368 VLPPKVFRLLEKPLHEFQ--G-HSSEVLDLSWSKNG-FLLSSSAD--------KTVRLWQVGIDRCLRVFSHNNYVTSVA  435 (519)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~--~-h~~~V~~l~~sp~~-~L~sgs~D--------g~V~lWdl~~~~~~~~~~h~~~V~~v~  435 (519)
                      +++.....+  +.+....  . .....+++++.|+| +.++....        +.|..++.. ++.......-...+.|+
T Consensus        64 ~~d~~~g~~--~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~  140 (246)
T PF08450_consen   64 VVDPDTGKV--TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIA  140 (246)
T ss_dssp             EEETTTTEE--EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEE
T ss_pred             EEecCCCcE--EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceE
Confidence            111111110  1122221  1 34578899999999 55554433        457777777 66655555666789999


Q ss_pred             EeeCCCCEEE-EEeCCCeEEEEEcCCCc--EE------eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          436 FNPVDDNYFI-SGSIDGKVRIWEVRRCQ--VV------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       436 fsp~d~~~l~-sgs~Dg~V~iwd~~~~~--~~------~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |+| +++.|+ +-+..+.|..+++....  +.      .........-.+++..+|++.++....+.|.+++.. ++++
T Consensus       141 ~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  141 FSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             EET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred             ECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence            999 887665 66678899999986322  21      122222347889999999988887789999999998 5443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=7.5e-05  Score=73.89  Aligned_cols=101  Identities=16%  Similarity=0.195  Sum_probs=80.4

Q ss_pred             eCCCcEEEEECCCCeEE-EEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC------CcE----------Eee
Q 010037          406 SADKTVRLWQVGIDRCL-RVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR------CQV----------VDY  466 (519)
Q Consensus       406 s~Dg~V~lWdl~~~~~~-~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~------~~~----------~~~  466 (519)
                      -.++.+.++|-....+. ..+.  |..+|.++.++| -+..+++....|.|.-|....      ..+          ..+
T Consensus       119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f  197 (558)
T KOG0882|consen  119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF  197 (558)
T ss_pred             ccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcc
Confidence            35688999987765533 2332  999999999999 888999999999999998873      111          123


Q ss_pred             ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       467 ~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      .......+++.|+|+|..+.+-..|..|++++++++++.+.
T Consensus       198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             cccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            34556789999999999999999999999999999998764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.78  E-value=0.0016  Score=72.14  Aligned_cols=240  Identities=12%  Similarity=0.146  Sum_probs=135.8

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      +.+.++.|.-++..++.+...|.|.+-|......+..        ..-...|.+++||||+..++-.+..+++.+-.- +
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~  139 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--------GNVDNGISAASWSPDEELLALITGRQTLLFMTK-D  139 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeee--------eeccCceEEEeecCCCcEEEEEeCCcEEEEEec-c
Confidence            4566778888999999999999999997665443322        224678999999999999998888777765432 2


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      -..+........        ....+....+.+....    ..+.++......    +......+..... .-...=+.|+
T Consensus       140 f~~i~E~~L~~d--------~~~~sk~v~VGwGrke----Tqfrgs~gr~~~----~~~~~~ek~~~~~-~~~~~~~~Is  202 (1265)
T KOG1920|consen  140 FEPIAEKPLDAD--------DERKSKFVNVGWGRKE----TQFRGSEGRQAA----RQKIEKEKALEQI-EQDDHKTSIS  202 (1265)
T ss_pred             ccchhccccccc--------cccccccceecccccc----eeeecchhhhcc----cccccccccccch-hhccCCceEE
Confidence            221111111000        0000111111111100    001111000000    0000000000000 0112235689


Q ss_pred             EcCCC-eEEEEe----CC-CcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe---CCCeEEEEEcCCCc---
Q 010037          396 WSKNG-FLLSSS----AD-KTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQ---  462 (519)
Q Consensus       396 ~sp~~-~L~sgs----~D-g~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~iwd~~~~~---  462 (519)
                      |--+| ++++..    .+ +.|+|||-+ +..-.+- +..+.-.+++|-| .|..+++-.   .|+.|.++..+.-+   
T Consensus       203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~  280 (1265)
T KOG1920|consen  203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGE  280 (1265)
T ss_pred             EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccc
Confidence            99999 777632    33 899999977 3322221 1334457899999 888888743   35679999865422   


Q ss_pred             EE-eeccCCCceEEEEEeeCCCEEEE---EecCCeEEEEECCCCe
Q 010037          463 VV-DYTDIREIVSAVCYCPDGKGGIV---GTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       463 ~~-~~~~~~~~V~~v~~spdg~~l~s---gs~dg~v~iwdl~~~~  503 (519)
                      .. .+......|..++|+.++..|++   ......|++|-+.+..
T Consensus       281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            22 23333344999999999999988   4444459999998764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.00054  Score=72.61  Aligned_cols=104  Identities=19%  Similarity=0.284  Sum_probs=85.3

Q ss_pred             CC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeC----CCCEEEEEeCCCeEEEEEcC---CCcEEeeccCC
Q 010037          399 NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVR---RCQVVDYTDIR  470 (519)
Q Consensus       399 ~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~----d~~~l~sgs~Dg~V~iwd~~---~~~~~~~~~~~  470 (519)
                      .| ++++|+.||+|.|-.+-+.+...++....++.+|+++|.    ..+.+++|+.-| +.++.-+   +...+......
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e  160 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE  160 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence            46 999999999999999999998888888899999999993    256899999888 8777643   23334566778


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       471 ~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ++|.+++|  .|+++|-++.+| |+|||+.+.+.+.
T Consensus       161 G~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~  193 (846)
T KOG2066|consen  161 GPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLT  193 (846)
T ss_pred             cceEEEEe--cCcEEEEecCCC-cEEEeccccceee
Confidence            89999999  567888888776 7999999877654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.00038  Score=73.90  Aligned_cols=71  Identities=21%  Similarity=0.302  Sum_probs=59.3

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      .+++|||..-.|+.|-..|.+.||.......  .+     ....|+.+|..+.||++|..|+|+..-|.|.+|....-
T Consensus        63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~--ht-----v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTET--HT-----VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             hhhccChHHHHHhhccccceeEEEecCCcee--ee-----eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence            3589999999999999999999998764332  11     12459999999999999999999999999999998643

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.70  E-value=0.0036  Score=51.06  Aligned_cols=99  Identities=21%  Similarity=0.310  Sum_probs=71.4

Q ss_pred             eeEEEEcC---CC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          391 VLDLSWSK---NG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       391 V~~l~~sp---~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      |++|++..   +|  .|+.|+.|..||+|+  ....+..+.-...|++++-..  ...|+.+..+|+|-+|+-.. ++-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~-RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ-RLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcc-eeee
Confidence            45555543   55  999999999999997  457888888888899998876  47899999999999997632 2222


Q ss_pred             eccCCCceEEEEEee-CC---CEEEEEecCCeEE
Q 010037          466 YTDIREIVSAVCYCP-DG---KGGIVGTMTGNCR  495 (519)
Q Consensus       466 ~~~~~~~V~~v~~sp-dg---~~l~sgs~dg~v~  495 (519)
                      .. .+..++++++.. +|   .-|++|-.+|.|-
T Consensus        77 iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            22 333466665543 33   3589999999874

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.66  E-value=0.0067  Score=62.07  Aligned_cols=251  Identities=12%  Similarity=0.140  Sum_probs=124.5

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCcccccc-----cc-------------------------------ccccceee
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSREL-----SS-------------------------------LYTGQEFL  281 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~-----~~-------------------------------~~~~~~l~  281 (519)
                      +..+.|.++..-|++|...|.|.||.+...+..-     ..                               +....-+.
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~   83 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD   83 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence            4567899999999999999999999776432111     00                               00001234


Q ss_pred             cCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccC--------CCCceEEEeecCCCCeEEeeccCCcee
Q 010037          282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD--------TDPSCLYFTINHLSQLIPIDVDKEKID  353 (519)
Q Consensus       282 ~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (519)
                      ...++|++++.|.-| ++|.|.++|.+.|.|++....+..-...+        ..++++.|..        +....+...
T Consensus        84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v--------m~~~~D~yS  154 (395)
T PF08596_consen   84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV--------MTLGGDGYS  154 (395)
T ss_dssp             --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE--------EE-TTSSSE
T ss_pred             ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE--------EecCCCccc
Confidence            567999999998544 89999999999999998888776644433        1222333321        222222223


Q ss_pred             eeeeeccCCCeeEEEeCCcc---ccccccceeEeeccCCCeeEEE-EcC-----------------CC----eEEEEeCC
Q 010037          354 KTKSLRKSSDLTCVVLPPKV---FRLLEKPLHEFQGHSSEVLDLS-WSK-----------------NG----FLLSSSAD  408 (519)
Q Consensus       354 ~~~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~-~sp-----------------~~----~L~sgs~D  408 (519)
                      ....+.++..+.+.++....   ....-........+.+.|..|. ++.                 .+    .++....+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence            33333333334443332210   0000011111123334444333 211                 11    23444457


Q ss_pred             CcEEEEECCCCeEEEEec-CCCcEEEEEEee----CCCCEEEEEeCCCeEEEEEcCCCcEEeeccC-----CCceEEEEE
Q 010037          409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP----VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-----REIVSAVCY  478 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp----~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-----~~~V~~v~~  478 (519)
                      ..+|++...+.+..+..- ..-.+..+.+-+    ..+..|++-..+|.|++|.+..-+.+.....     ...+...++
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi  314 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI  314 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred             cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence            789999998877655443 223344445521    1567888889999999999998766632221     123455677


Q ss_pred             eeCCCEEEEEecCCeEEEEE
Q 010037          479 CPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       479 spdg~~l~sgs~dg~v~iwd  498 (519)
                      +++|..++..+.. .+.++.
T Consensus       315 s~~Gdi~~~~gps-E~~l~s  333 (395)
T PF08596_consen  315 SRNGDIFYWTGPS-EIQLFS  333 (395)
T ss_dssp             -TTS-EEEE-SSS-EEEEEE
T ss_pred             CCCCCEEEEeCcc-cEEEEE
Confidence            8999877666543 333333

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.62  E-value=0.003  Score=59.85  Aligned_cols=105  Identities=18%  Similarity=0.177  Sum_probs=75.0

Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee-cc-C---CCc
Q 010037          398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TD-I---REI  472 (519)
Q Consensus       398 p~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~-~---~~~  472 (519)
                      .++.+++++.++.|..||..+++.+..+.....+..... . .+..++.++.++.|+.+|..+++++.. .. .   ...
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~-~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV-V-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE-E-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee-e-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            445888889999999999999998877763332222122 2 456677777888999999999998843 11 1   112


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ........++..++++..+|.|..+|+++|++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~  144 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL  144 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcE
Confidence            23344444588899999999999999999987

...

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.62  E-value=0.00044  Score=74.15  Aligned_cols=144  Identities=18%  Similarity=0.227  Sum_probs=104.7

Q ss_pred             eecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---------CCcEEEEe
Q 010037          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRVWK  312 (519)
Q Consensus       242 ~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---------Dg~I~iWd  312 (519)
                      -...+++.+.+|...|+|.+.|..       .....+++.+|++.|..+..  .|+.|+|||.         |.-|+|||
T Consensus       182 imR~Nnr~lf~G~t~G~V~LrD~~-------s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD  252 (1118)
T KOG1275|consen  182 IMRYNNRNLFCGDTRGTVFLRDPN-------SFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD  252 (1118)
T ss_pred             EEEecCcEEEeecccceEEeecCC-------cCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence            345678899999999999999977       45566789999999987665  5889999985         55678888


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      ++..+.+.-+..                                                              +.+ ..
T Consensus       253 LRmmral~PI~~--------------------------------------------------------------~~~-P~  269 (1118)
T KOG1275|consen  253 LRMMRALSPIQF--------------------------------------------------------------PYG-PQ  269 (1118)
T ss_pred             hhhhhccCCccc--------------------------------------------------------------ccC-ch
Confidence            876554322211                                                              111 13


Q ss_pred             EEEEcCCC--eEEEEeCCCcEEEEE---CCCCe--EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          393 DLSWSKNG--FLLSSSADKTVRLWQ---VGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       393 ~l~~sp~~--~L~sgs~Dg~V~lWd---l~~~~--~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      -+.|+|.-  .++.++..|...+-|   +....  ..........+..+.+++ +++.++.|..+|.|.+|--
T Consensus       270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcEeeecC
Confidence            34566754  788888889999888   33321  122223556699999999 9999999999999999973

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.61  E-value=0.018  Score=54.92  Aligned_cols=206  Identities=13%  Similarity=0.138  Sum_probs=100.4

Q ss_pred             eeecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEecccCeeeceeeccC-CCCceEEEeecCCCCeEEeeccCC-ceeee
Q 010037          279 EFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKE-KIDKT  355 (519)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  355 (519)
                      .+.+-...+..|+|+|+.+ ++++....+.|...+. +|+.+..+.... .....+.+..+.  . +.+.-+.. .....
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~--~-~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG--R-YVLSEERDQRLYIF   91 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT--E-EEEEETTTTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC--E-EEEEEcCCCcEEEE
Confidence            3445556699999999765 5556667788888886 577777776543 233344443221  1 11111111 11111


Q ss_pred             eeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC---CeEEEEec-----
Q 010037          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS-----  426 (519)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~---~~~~~~~~-----  426 (519)
                      ..-..........       ...-.+.....++..+-.++|.|.+ .|+.+-...-.+||.++.   ...+....     
T Consensus        92 ~~~~~~~~~~~~~-------~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~  164 (248)
T PF06977_consen   92 TIDDDTTSLDRAD-------VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD  164 (248)
T ss_dssp             EE----TT--EEE-------EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred             EEeccccccchhh-------ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence            1000000000000       0000001112356678999999987 777777777777887764   22222221     


Q ss_pred             ----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC----------CceEEEEEeeCCCEEEEEecCC
Q 010037          427 ----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR----------EIVSAVCYCPDGKGGIVGTMTG  492 (519)
Q Consensus       427 ----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~----------~~V~~v~~spdg~~l~sgs~dg  492 (519)
                          .-..+.+++++|..+++++.......|.++| .+++++......          ...-.|+|.++|++.+++ .-+
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpN  242 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPN  242 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTT
T ss_pred             cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCc
Confidence                3456889999998888888888899999999 667666422211          246789999999765554 444


Q ss_pred             eEEEE
Q 010037          493 NCRFY  497 (519)
Q Consensus       493 ~v~iw  497 (519)
                      ..++|
T Consensus       243 lfy~f  247 (248)
T PF06977_consen  243 LFYRF  247 (248)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            44443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.52  E-value=0.003  Score=65.56  Aligned_cols=87  Identities=15%  Similarity=0.142  Sum_probs=42.0

Q ss_pred             cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE-EEEEeeC-CCEEEE
Q 010037          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS-AVCYCPD-GKGGIV  487 (519)
Q Consensus       410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~-~v~~spd-g~~l~s  487 (519)
                      .|.+||+.+++.++.+.... |..|.|++ ++.+++..+.+ .+.|++.+......  .....+. +++.-.. ...+-+
T Consensus       127 ~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~--~~~~g~e~~f~~~~E~~~~IkS  201 (443)
T PF04053_consen  127 FICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAA--IPEEGVEDAFELIHEISERIKS  201 (443)
T ss_dssp             EEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHH--BTTTB-GGGEEEEEEE-S--SE
T ss_pred             CEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhccc--ccccCchhceEEEEEecceeEE
Confidence            67777777777777766443 67777776 66666666543 56666654333333  1122222 4444444 556666


Q ss_pred             EecCCeEEEEECCC
Q 010037          488 GTMTGNCRFYDIKG  501 (519)
Q Consensus       488 gs~dg~v~iwdl~~  501 (519)
                      |.+++.+.||...+
T Consensus       202 g~W~~d~fiYtT~~  215 (443)
T PF04053_consen  202 GCWVEDCFIYTTSN  215 (443)
T ss_dssp             EEEETTEEEEE-TT
T ss_pred             EEEEcCEEEEEcCC
Confidence            67777777776655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.48  E-value=0.024  Score=58.00  Aligned_cols=152  Identities=20%  Similarity=0.223  Sum_probs=84.9

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec-eeeccCCCCc-eEEEeecCCCCeEEeeccCCceeeeeeeccCCC
Q 010037          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD-GFDVQDTDPS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  363 (519)
                      .|..|.|+++..-|+.|...|.|.||.+..++... .-........ +-.-..+....+..+....           .  
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~-----------~--   69 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRA-----------P--   69 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG---------------
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhC-----------C--
Confidence            58899999998999999999999999987654322 0000000000 0000000011111110000           0  


Q ss_pred             eeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec---------CCCcEEEE
Q 010037          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSV  434 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~---------h~~~V~~v  434 (519)
                              ......-.|...++...++|++++.+.-|+++.|..+|.+.|.|++....+..-.         ....|+++
T Consensus        70 --------~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i  141 (395)
T PF08596_consen   70 --------PSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI  141 (395)
T ss_dssp             --------TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred             --------cccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence                    0000011345556667899999999988899999999999999999988877632         34578889


Q ss_pred             EEeeC----CC---CEEEEEeCCCeEEEEEc
Q 010037          435 AFNPV----DD---NYFISGSIDGKVRIWEV  458 (519)
Q Consensus       435 ~fsp~----d~---~~l~sgs~Dg~V~iwd~  458 (519)
                      .|...    |+   -++++|...|.+.+|.+
T Consensus       142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI  172 (395)
T PF08596_consen  142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKI  172 (395)
T ss_dssp             EEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             EEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence            88731    22   36788888888888865

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.46  E-value=0.0014  Score=66.81  Aligned_cols=96  Identities=17%  Similarity=0.256  Sum_probs=70.5

Q ss_pred             CeeEEEEcCCC-eEEEEe-----------CCCcEEEEECCCCeEEEEecC--C-CcE-EEEEEeeCCCCEEEEEeCCCeE
Q 010037          390 EVLDLSWSKNG-FLLSSS-----------ADKTVRLWQVGIDRCLRVFSH--N-NYV-TSVAFNPVDDNYFISGSIDGKV  453 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs-----------~Dg~V~lWdl~~~~~~~~~~h--~-~~V-~~v~fsp~d~~~l~sgs~Dg~V  453 (519)
                      .|.-+.|||+. +|+|=+           ....++|||+.+|...+.|..  . ..+ .-+.|+. |+.|+|--.. ..|
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~si  328 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSI  328 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceE
Confidence            46677888887 888754           226799999999999988862  2 222 3467898 8999987665 579


Q ss_pred             EEEEcCCCcEEeec-cCCCceEEEEEeeCCCEEEE
Q 010037          454 RIWEVRRCQVVDYT-DIREIVSAVCYCPDGKGGIV  487 (519)
Q Consensus       454 ~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~s  487 (519)
                      .||+..+..++... -....|....|+|.++.||-
T Consensus       329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             EEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            99999886666432 23456888899998887765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.44  E-value=0.054  Score=55.83  Aligned_cols=231  Identities=7%  Similarity=0.037  Sum_probs=120.2

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEE-EEEccCCCEEEEEeCCCcEEEEecccCeeeceeec
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~  324 (519)
                      .+..++.++.+|.+..+|...++..-. ...       .+.+.+ ...  .+..++.+..++.|..+|..+++.+.....
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~-------~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  188 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQ-TKV-------AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNL  188 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCccc-ccC-------CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence            355677788899999999876554221 111       111111 111  234566777899999999999998776654


Q ss_pred             cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc-ceeEee-ccC-CCeeEEEEcC---
Q 010037          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK-PLHEFQ-GHS-SEVLDLSWSK---  398 (519)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~-~h~-~~V~~l~~sp---  398 (519)
                      .......   . .....++.   . +     ..+....++.+..++........+ .+.... .+. .....+.-+|   
T Consensus       189 ~~~~~~~---~-~~~sP~v~---~-~-----~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~  255 (394)
T PRK11138        189 DVPSLTL---R-GESAPATA---F-G-----GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV  255 (394)
T ss_pred             CCCcccc---c-CCCCCEEE---C-C-----EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence            3111000   0 00000000   0 0     001111122222222211111000 000000 000 0000111122   


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec-cCC-CceEEE
Q 010037          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIR-EIVSAV  476 (519)
Q Consensus       399 ~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~-~~V~~v  476 (519)
                      ++.++.++.++.+..+|+.+++.+-....... ..+..   .+..++.++.+|.|..+|..+++.+-.. ... ....+.
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp  331 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP  331 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence            44777788899999999999987755542221 12222   4567777888999999999999876321 111 112222


Q ss_pred             EEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          477 CYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       477 ~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ..  .+..|++++.+|.+++.|..+++++
T Consensus       332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        332 VL--YNGYLVVGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             EE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            22  2456888999999999999998865

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.42  E-value=0.11  Score=50.52  Aligned_cols=206  Identities=12%  Similarity=0.099  Sum_probs=131.1

Q ss_pred             EEEEEcc-CCCEEEEEeCCCc-EEEEecccCeeeceeeccCCCCc--eEEEeecCCCCeEEeeccCCceeeeeeeccCCC
Q 010037          288 LTMKFSL-DGQYLASGGEDGT-VRVWKVIEHERLDGFDVQDTDPS--CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (519)
Q Consensus       288 ~~l~fsp-dg~~LaSgs~Dg~-I~iWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  363 (519)
                      ..++.+| .+..++.+-.-|+ ..+||..+++....+........  .-.|+++.           ........-.....
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-----------~~LytTEnd~~~g~   76 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-----------RLLYTTENDYETGR   76 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-----------CEEEEeccccCCCc
Confidence            4577888 4556666666654 67899999988776654333211  11222222           11112222234456


Q ss_pred             eeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEE------------------eCCCcEEEEECCCCeEEEE
Q 010037          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS------------------SADKTVRLWQVGIDRCLRV  424 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sg------------------s~Dg~V~lWdl~~~~~~~~  424 (519)
                      +.+-+|+...   ....+.++..|.-....+.+.|+| .|+.+                  +++..+.+.|..+++.+..
T Consensus        77 G~IgVyd~~~---~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q  153 (305)
T PF07433_consen   77 GVIGVYDAAR---GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ  153 (305)
T ss_pred             EEEEEEECcC---CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence            6666776651   123366677777777888899998 66654                  2445677778888988876


Q ss_pred             ec-----CCCcEEEEEEeeCCCCEEEEEeCCCe-------EEEEEcCCC-cEE-----eeccCCCceEEEEEeeCCCEEE
Q 010037          425 FS-----HNNYVTSVAFNPVDDNYFISGSIDGK-------VRIWEVRRC-QVV-----DYTDIREIVSAVCYCPDGKGGI  486 (519)
Q Consensus       425 ~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~-------V~iwd~~~~-~~~-----~~~~~~~~V~~v~~spdg~~l~  486 (519)
                      ..     |...|..+++.+ ++..++..-..|.       |-+++.... +.+     .+....+.+-+|+++++|..++
T Consensus       154 ~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia  232 (305)
T PF07433_consen  154 VELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA  232 (305)
T ss_pred             eecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence            42     667899999998 7766665544332       444444332 111     1345678899999999999887


Q ss_pred             EEec-CCeEEEEECCCCeeeecc
Q 010037          487 VGTM-TGNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       487 sgs~-dg~v~iwdl~~~~l~~~~  508 (519)
                      +.+- -|.+.+||..++.++...
T Consensus       233 ~tsPrGg~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  233 VTSPRGGRVAVWDAATGRLLGSV  255 (305)
T ss_pred             EECCCCCEEEEEECCCCCEeecc
Confidence            7665 567999999999887654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00035  Score=68.41  Aligned_cols=81  Identities=16%  Similarity=0.262  Sum_probs=72.6

Q ss_pred             eeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      ...+.+|...|.+|+|+|..  +|..++.+.+|+|.|+++..++..+.....+++++|.-++.+++..|-..|.|.|||+
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            33567788999999999976  7899999999999999999999999867999999999977888999999999999999


Q ss_pred             CCC
Q 010037          459 RRC  461 (519)
Q Consensus       459 ~~~  461 (519)
                      +..
T Consensus       266 R~~  268 (463)
T KOG1645|consen  266 RQP  268 (463)
T ss_pred             cCC
Confidence            874

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.37  E-value=0.16  Score=49.36  Aligned_cols=234  Identities=11%  Similarity=0.074  Sum_probs=123.8

Q ss_pred             cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceee
Q 010037          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (519)
Q Consensus       244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~  323 (519)
                      ...++.|+.|+.+| |.+++........        -..+..+|..|...|+-+.|+.-+ |+.+.++++..-.......
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~--------~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPT--------RILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccce--------eEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence            34678999999999 8888882211111        112334499999999888777665 5999999987655433111


Q ss_pred             ------------ccCCCCceEEEe--ecCCC-CeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc-cceeEeecc
Q 010037          324 ------------VQDTDPSCLYFT--INHLS-QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGH  387 (519)
Q Consensus       324 ------------~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~h  387 (519)
                                  .......+..+.  ..... ....+..             .....++.|....  ... +..+++. -
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-------------kk~i~i~~~~~~~--~~f~~~~ke~~-l  137 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-------------KKKILIYEWNDPR--NSFSKLLKEIS-L  137 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEEEEE-------------CCEEEEEEEECCc--ccccceeEEEE-c
Confidence                        001111122222  11111 1111111             1111222222210  011 2233333 2


Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecC-------------CCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-------------NNYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h-------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                      ...+.+++|.++ .|+.|.. +...+.|+.++.....+..             ..++..+...  ++.+|++-  |..-.
T Consensus       138 p~~~~~i~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~  211 (275)
T PF00780_consen  138 PDPPSSIAFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGV  211 (275)
T ss_pred             CCCcEEEEEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEE
Confidence            478899999944 6666654 4588899998776655531             1233333333  35555543  33333


Q ss_pred             EEEcCCC----cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeeccccceeEE
Q 010037          455 IWEVRRC----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFA  515 (519)
Q Consensus       455 iwd~~~~----~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~~~~~~  515 (519)
                      +.|....    ..+.|.   ..+.++++.  ..+|++.+. +.|.||++.+++++|.-..+.+..
T Consensus       212 fv~~~G~~~r~~~i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~~  270 (275)
T PF00780_consen  212 FVNKNGEPSRKSTIQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPNIRL  270 (275)
T ss_pred             EEcCCCCcCcccEEEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCCEEE
Confidence            3444332    222343   345566663  346766655 569999999999988755554443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.37  E-value=0.069  Score=52.63  Aligned_cols=247  Identities=14%  Similarity=0.148  Sum_probs=129.2

Q ss_pred             eeecCCCCeEEe----------eecCCeEEEeeCCccccccccccccc-eeecCCCCEEEEEEccCCCEEEEEe--CCCc
Q 010037          241 ATLKPGDHELTL----------GQRMRRVRVHPVKKQSRELSSLYTGQ-EFLAHEGSILTMKFSLDGQYLASGG--EDGT  307 (519)
Q Consensus       241 ~~~sp~g~~las----------gs~dg~I~vw~~~~~~~~~~~~~~~~-~l~~H~~~I~~l~fspdg~~LaSgs--~Dg~  307 (519)
                      +.++|+++.+++          |-..-.|.+||.........-....+ .+. .--..+.+.++.||++++..-  ---.
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-VVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B---BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-ecccccceEEccCCcEEEEEccCCCCe
Confidence            678999998875          44556799999885432111000000 000 001223458889999887753  3457


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |.|-|+..++.+..+..+.    |....+.....+..+..++. ..... +..  ++....          +.-..|..-
T Consensus       120 VtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGs-l~~v~-Ld~--~Gk~~~----------~~t~~F~~~  181 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGS-LLTVT-LDA--DGKEAQ----------KSTKVFDPD  181 (342)
T ss_dssp             EEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSC-EEEEE-ETS--TSSEEE----------EEEEESSTT
T ss_pred             EEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCc-eEEEE-ECC--CCCEeE----------eeccccCCC
Confidence            9999999988877776533    44333333333322222211 11111 110  000000          000111111


Q ss_pred             CCCee-EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Eec-----------CCCcEEEEEEeeCCCCEEEEEe--CC
Q 010037          388 SSEVL-DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFS-----------HNNYVTSVAFNPVDDNYFISGS--ID  450 (519)
Q Consensus       388 ~~~V~-~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~--~~~-----------h~~~V~~v~fsp~d~~~l~sgs--~D  450 (519)
                      ..++. .-++...+ .++--+..|.|+--|+.......  .+.           -.+.-.-+++++..+++++.--  .+
T Consensus       182 ~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~  261 (342)
T PF06433_consen  182 DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE  261 (342)
T ss_dssp             TS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred             CcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence            12221 22344443 56667888888888887664322  221           1122344677763333333211  11


Q ss_pred             C-------eEEEEEcCCCcEEeeccCCCceEEEEEeeCCC-EEEEE-ecCCeEEEEECCCCeeee
Q 010037          451 G-------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVG-TMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       451 g-------~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~sg-s~dg~v~iwdl~~~~l~~  506 (519)
                      +       .|.++|+.+++.+........+.+|+.+.|.+ +|++. ..++.+.+||..+++++.
T Consensus       262 gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  262 GSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             T-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             CCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            1       48888999999997666667788999999876 55444 457899999999998765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.36  E-value=0.00086  Score=70.23  Aligned_cols=164  Identities=18%  Similarity=0.200  Sum_probs=112.8

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCC
Q 010037          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (519)
Q Consensus       283 H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  362 (519)
                      |...|.--++...++||+.|+.-|.+.+|+-..+.....                                         
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-----------------------------------------   70 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-----------------------------------------   70 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-----------------------------------------
Confidence            444555556777899999999999999999766553210                                         


Q ss_pred             CeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Ee-----cCCCcEEEE
Q 010037          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VF-----SHNNYVTSV  434 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~--~~-----~h~~~V~~v  434 (519)
                                          +..+-.+.+..+..+++. +++.|+..|.|.++.++...+-.  .+     .|+..|+|+
T Consensus        71 --------------------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal  130 (726)
T KOG3621|consen   71 --------------------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTAL  130 (726)
T ss_pred             --------------------cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEE
Confidence                                111123445566677777 78888899999999887643221  11     278899999


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEEcCCCc-----EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeeccc
Q 010037          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQ-----VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLST  509 (519)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-----~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~  509 (519)
                      +|++ ++..+++|..-|+|..-.+....     ..........|-.+.+...  +|++++.. .+.++++...+++|+.+
T Consensus       131 ~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~--~LLVStl~-r~~Lc~tE~eti~QIG~  206 (726)
T KOG3621|consen  131 EWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS--YLLVSTLT-RCILCQTEAETITQIGK  206 (726)
T ss_pred             Eecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccc--eehHhhhh-hhheeecchhHHHHhcC
Confidence            9999 99999999999999998887732     2234445566766666432  44444433 45678888777777765


Q ss_pred             cc
Q 010037          510 TA  511 (519)
Q Consensus       510 ~~  511 (519)
                      ++
T Consensus       207 k~  208 (726)
T KOG3621|consen  207 KP  208 (726)
T ss_pred             CC
Confidence            54

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.001  Score=68.96  Aligned_cols=91  Identities=14%  Similarity=0.269  Sum_probs=76.2

Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEE-EEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~-~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      ...|.-+.|+|.- ++|++..+|.|.+..++ .+.+.++. ++..++ +++|.| ||++||.|-.||+|++-|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            3457788999988 99999999999999998 66777777 777777 999999 8999999999999999999998877


Q ss_pred             ee--ccCCCceEEEEEee
Q 010037          465 DY--TDIREIVSAVCYCP  480 (519)
Q Consensus       465 ~~--~~~~~~V~~v~~sp  480 (519)
                      .-  ......|+++-|.|
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            43  44556677777753

>smart00320 WD40 WD40 repeats

Probab=97.33  E-value=0.00047  Score=43.58  Aligned_cols=35  Identities=40%  Similarity=0.904  Sum_probs=31.6

Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      ..+.+|...|.++.|.+++.++++++.|+.+++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34667899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.32  E-value=0.013  Score=55.40  Aligned_cols=209  Identities=18%  Similarity=0.208  Sum_probs=121.2

Q ss_pred             eeecCCCCeEEeeec-----CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEE-ecc
Q 010037          241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW-KVI  314 (519)
Q Consensus       241 ~~~sp~g~~lasgs~-----dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iW-d~~  314 (519)
                      -.|+|||.+|.+.-.     -|.|-|||....-      ...-++..|--.-..|.|.+||+.|+.+  +|-|..- |..
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~f------qrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdfg  190 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGF------QRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDFG  190 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEeccccc------ceecccccCCcCcceeEEecCCcEEEEe--CCceecccccC
Confidence            489999999987433     3789999987432      2334566777777889999999988876  4556655 332


Q ss_pred             cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (519)
                      .-+    +++..-.++.+                                   +.+....++.+|....-..+.-.|..+
T Consensus       191 R~~----lNldsMePSlv-----------------------------------lld~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         191 RTE----LNLDSMEPSLV-----------------------------------LLDAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ccc----cchhhcCccEE-----------------------------------EEeccccchhhhccCchhhhhcceeee
Confidence            111    11111111111                                   111111111122111112355667888


Q ss_pred             EEcCCCeEEEEe-C-----CCcEEEEECCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          395 SWSKNGFLLSSS-A-----DKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       395 ~~sp~~~L~sgs-~-----Dg~V~lWdl~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      +..++|.+..|+ .     |---.+=....++.+..+.        ...+|-+|+.+..++-..++.-..+...|||..+
T Consensus       232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t  311 (366)
T COG3490         232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT  311 (366)
T ss_pred             eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence            888888444443 1     2112222233445554443        4568899999984444444555566789999999


Q ss_pred             CcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      +.++......+   +.-.-+....+++.+.+|.|.+|.-
T Consensus       312 G~vv~~a~l~d---aaGva~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         312 GAVVSEAALPD---AAGVAAAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             CcEEecccccc---cccceeccCceEEecCCceEEeccc
Confidence            99986443322   2223345566888888999998854

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.32  E-value=0.016  Score=61.53  Aligned_cols=102  Identities=16%  Similarity=0.109  Sum_probs=70.7

Q ss_pred             CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE------------EEEecCCCcEEEEEEeeCCCCEEEEEeCCCeE
Q 010037          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC------------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV  453 (519)
Q Consensus       388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~------------~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (519)
                      ......++++|+|  .++++..+.+|.|.|+.+.+.            .....-...-...+|.+ +++.+.+-..|..|
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsqv  398 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQI  398 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeeccee
Confidence            4567789999999  455566799999999987552            33334444456678998 88888899999999


Q ss_pred             EEEEcCC----------CcEEeeccCCCceEEEE------EeeCCCEEEEEec
Q 010037          454 RIWEVRR----------CQVVDYTDIREIVSAVC------YCPDGKGGIVGTM  490 (519)
Q Consensus       454 ~iwd~~~----------~~~~~~~~~~~~V~~v~------~spdg~~l~sgs~  490 (519)
                      ..||+.+          ..++........+-.+.      -.|||++|++...
T Consensus       399 ~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        399 VKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             EEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            9999876          23443322222222233      3689999988654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.30  E-value=0.00034  Score=74.28  Aligned_cols=107  Identities=12%  Similarity=0.160  Sum_probs=88.6

Q ss_pred             eEEEEcCCC-eEEEEe----CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-
Q 010037          392 LDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-  465 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs----~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-  465 (519)
                      +-.+|+|.. +++.++    ..|.|.|| ..+|++.+....+-.+++++|+| ..-.|+.|-.-|.+.+|...+.+... 
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence            345799988 777665    45788888 46777766666566688999999 77888999999999999999887764 


Q ss_pred             eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      ...|..+|..+.|+|+|..|+++..-|.|.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            56788999999999999999999999999999765

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.001  Score=68.92  Aligned_cols=79  Identities=20%  Similarity=0.285  Sum_probs=68.0

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE-EEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS-AVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~-~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      -...+.-+.|+| .-.++|.+..+|.|-+..++-.++....-+...++ ++||.|||+.||+|-.||+|++.|+.++..+
T Consensus        19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            345678899999 88999999999999999999666666665777777 9999999999999999999999999987654


Q ss_pred             e
Q 010037          506 D  506 (519)
Q Consensus       506 ~  506 (519)
                      +
T Consensus        98 ~   98 (665)
T KOG4640|consen   98 V   98 (665)
T ss_pred             e
Confidence            4

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.0013  Score=69.03  Aligned_cols=111  Identities=12%  Similarity=0.158  Sum_probs=85.3

Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--  464 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--  464 (519)
                      .|.--++...+ +++.|+.-|.|.+|+-..+.....-.  ....+..+..++ +..++|.|+..|.|.++-+.....-  
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcc
Confidence            33333444555 99999999999999977766544332  445566677788 8889999999999999998774322  


Q ss_pred             ---e--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          465 ---D--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       465 ---~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                         .  -..|...|++++|++++..+.+|...|+|..-.+..
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence               1  233678899999999999999999999998887766

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.22  E-value=0.034  Score=62.11  Aligned_cols=208  Identities=17%  Similarity=0.201  Sum_probs=111.8

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCC----ccccc------cccc------cccceeecC------------C--
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVK----KQSRE------LSSL------YTGQEFLAH------------E--  284 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~----~~~~~------~~~~------~~~~~l~~H------------~--  284 (519)
                      .++|.+++|+||+..++..+..+++.+-...    ..+..      .+..      .....|.|.            .  
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            4667788999999999999988888775431    00000      0000      000012111            1  


Q ss_pred             -------CCEEEEEEccCCCEEEEEe----CC-CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCce
Q 010037          285 -------GSILTMKFSLDGQYLASGG----ED-GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI  352 (519)
Q Consensus       285 -------~~I~~l~fspdg~~LaSgs----~D-g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (519)
                             +.=..|.|--||.|+|+..    .+ +.|+|||-. +..-..-........++.|.|.+ ..+.++.      
T Consensus       189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq------  260 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQ------  260 (1265)
T ss_pred             ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEeeee------
Confidence                   1123589999999999832    23 799999976 43222222222334455565522 2222111      


Q ss_pred             eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEE---EeCCCcEEEEECCCCeEEE--Eec
Q 010037          353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS---SSADKTVRLWQVGIDRCLR--VFS  426 (519)
Q Consensus       353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~s---gs~Dg~V~lWdl~~~~~~~--~~~  426 (519)
                            ....+..++++........ .....+......|..++|+.++ .|+.   ......|++|-+.+...-.  .+.
T Consensus       261 ------~~~sd~~IvffErNGL~hg-~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~  333 (1265)
T KOG1920|consen  261 ------CKTSDSDIVFFERNGLRHG-EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ  333 (1265)
T ss_pred             ------ecCCCCcEEEEecCCcccc-ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe
Confidence                  1122224444444322211 1111122233448999999998 6665   4445559999988765332  222


Q ss_pred             CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      .+.... +.|+|.....+..-..+|.+.++|+
T Consensus       334 ~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  334 FSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             cccccc-ccccCCCceeEEEEecCCcEEEEEE
Confidence            222222 8899976666666667777766664

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.21  E-value=0.012  Score=60.98  Aligned_cols=177  Identities=12%  Similarity=0.103  Sum_probs=81.1

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      ...+.++|+|+++++ ..+|...|+.......            ...+.-....|.+.++ +|+-....+|.|+.--+..
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~------------k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN------------KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTTTEE------------EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccCCcc------------cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence            345899999999998 5678888887321111            1123445678998554 6677678899997433333


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      ....+..+. ....++.     +.++.               ...+..+.+++....    +.+..+..  .+|..+.|+
T Consensus       101 ~~k~i~~~~-~~~~If~-----G~LL~---------------~~~~~~i~~yDw~~~----~~i~~i~v--~~vk~V~Ws  153 (443)
T PF04053_consen  101 VVKSIKLPF-SVEKIFG-----GNLLG---------------VKSSDFICFYDWETG----KLIRRIDV--SAVKYVIWS  153 (443)
T ss_dssp             TT-----SS--EEEEE------SSSEE---------------EEETTEEEEE-TTT------EEEEESS---E-EEEEE-
T ss_pred             cceEEcCCc-ccceEEc-----CcEEE---------------EECCCCEEEEEhhHc----ceeeEEec--CCCcEEEEE
Confidence            222332211 0111111     11111               111224555555432    22444442  248999999


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       398 p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      +++ +++..+. ..+.|++.+...... ..   ....+..+.=   -..-+-+|..++.+-||-..+
T Consensus       154 ~~g~~val~t~-~~i~il~~~~~~~~~-~~~~g~e~~f~~~~E---~~~~IkSg~W~~d~fiYtT~~  215 (443)
T PF04053_consen  154 DDGELVALVTK-DSIYILKYNLEAVAA-IPEEGVEDAFELIHE---ISERIKSGCWVEDCFIYTTSN  215 (443)
T ss_dssp             TTSSEEEEE-S--SEEEEEE-HHHHHH-BTTTB-GGGEEEEEE---E-S--SEEEEETTEEEEE-TT
T ss_pred             CCCCEEEEEeC-CeEEEEEecchhccc-ccccCchhceEEEEE---ecceeEEEEEEcCEEEEEcCC
Confidence            999 7777765 478887644322222 10   1112222211   134566777777788887766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.13  E-value=0.12  Score=51.70  Aligned_cols=174  Identities=18%  Similarity=0.243  Sum_probs=102.5

Q ss_pred             CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe-eeceeeccCCCCceEEEe
Q 010037          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-RLDGFDVQDTDPSCLYFT  335 (519)
Q Consensus       257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~  335 (519)
                      |+|.++++.+.......+.... -....++|++|+-- ++. |+.+. .+.|.+|++...+ ...               
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~-~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~---------------  122 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIH-STEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLK---------------  122 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEE-EEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEE---------------
T ss_pred             cEEEEEEEEcccccceEEEEEE-EEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchh---------------
Confidence            9999999987411001111111 12357899999876 444 44443 4789999997665 111               


Q ss_pred             ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEE
Q 010037          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQ  415 (519)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWd  415 (519)
                                                                   ...+. ....+.++....+ +++.|...+.|.++.
T Consensus       123 ---------------------------------------------~~~~~-~~~~i~sl~~~~~-~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen  123 ---------------------------------------------KAFYD-SPFYITSLSVFKN-YILVGDAMKSVSLLR  155 (321)
T ss_dssp             ---------------------------------------------EEEE--BSSSEEEEEEETT-EEEEEESSSSEEEEE
T ss_pred             ---------------------------------------------hheec-ceEEEEEEecccc-EEEEEEcccCEEEEE
Confidence                                                         01111 1225666666544 888998888888885


Q ss_pred             CCC-CeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-------C--cEE--eeccCCCceEEE---E
Q 010037          416 VGI-DRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-------C--QVV--DYTDIREIVSAV---C  477 (519)
Q Consensus       416 l~~-~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~-------~--~~~--~~~~~~~~V~~v---~  477 (519)
                      .+. ...+..+.   ....++++.|-+ +++.++.+..+|.|.++....       +  ++.  ........|+++   +
T Consensus       156 ~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~  234 (321)
T PF03178_consen  156 YDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS  234 (321)
T ss_dssp             EETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred             EEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence            543 33344443   566789999987 557999999999999998763       2  222  344456778887   5


Q ss_pred             EeeC--CC------EEEEEecCCeEEEE
Q 010037          478 YCPD--GK------GGIVGTMTGNCRFY  497 (519)
Q Consensus       478 ~spd--g~------~l~sgs~dg~v~iw  497 (519)
                      +.|.  +.      .++.++.+|.|.+.
T Consensus       235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  235 LIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eeecCCCCcccccceEEEEecCCEEEEE
Confidence            5552  22      48888899998743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.12  E-value=0.039  Score=45.09  Aligned_cols=66  Identities=27%  Similarity=0.329  Sum_probs=45.9

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCC---CEEEEEeCCCeEEE
Q 010037          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD---NYFISGSIDGKVRI  455 (519)
Q Consensus       388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~---~~l~sgs~Dg~V~i  455 (519)
                      ...|++++-...+.++.+-.+|+|-+|+-...  +-..+.+..++++++...++   .-|++|-.+|+|-+
T Consensus        42 ~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R--lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   42 TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR--LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ccceEEEEEcCCCEEEEEecCCEEEEEeCcce--eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            45677777777779999999999999975332  22233444578887765332   37999999998753

>smart00320 WD40 WD40 repeats

Probab=97.03  E-value=0.0021  Score=40.39  Aligned_cols=37  Identities=43%  Similarity=0.842  Sum_probs=31.3

Q ss_pred             eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 010037          420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (519)
Q Consensus       420 ~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd  457 (519)
                      +++..+. |...|+++.|+| .+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            3445554 788999999999 789999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.02  E-value=0.031  Score=59.35  Aligned_cols=102  Identities=17%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             cCCC-eEEEEeCCCcEEEEECCC-----CeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcE------
Q 010037          397 SKNG-FLLSSSADKTVRLWQVGI-----DRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQV------  463 (519)
Q Consensus       397 sp~~-~L~sgs~Dg~V~lWdl~~-----~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~------  463 (519)
                      .++| +...  .+++|.+.|..+     ...+..+.-......+.++| |++++++++ .+.+|.|.|+.+.+.      
T Consensus       285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            3456 3333  367899999998     56777777788889999999 888877655 589999999988552      


Q ss_pred             ------EeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          464 ------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       464 ------~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                            +............+|.++|+...+-..|..|..|++..
T Consensus       362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                  22233344445678999999888888999999999875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.01  E-value=0.018  Score=59.50  Aligned_cols=109  Identities=21%  Similarity=0.272  Sum_probs=70.6

Q ss_pred             EEEEcCCC--eEEEEeCCCc--EEEEECCCCeEEEEecC-CCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEE
Q 010037          393 DLSWSKNG--FLLSSSADKT--VRLWQVGIDRCLRVFSH-NNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVV  464 (519)
Q Consensus       393 ~l~~sp~~--~L~sgs~Dg~--V~lWdl~~~~~~~~~~h-~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~  464 (519)
                      .-+|+|+|  .+++...|+.  |.+.|+.++...+ +.+ .+.-+.=.|+| +|.+++-.+. .|  .|.++++..+...
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~  319 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVT  319 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence            45799999  5566667766  5566777777444 432 33334667899 8887776553 44  4777777777665


Q ss_pred             eeccCCCceEEEEEeeCCCEEEEEecC-Ce--EEEEECCCCe
Q 010037          465 DYTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKGMQ  503 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~~l~sgs~d-g~--v~iwdl~~~~  503 (519)
                      ........-..-.|+|||++|+..+.. |.  |.++|+.++.
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            444333333377899999998887753 44  6777776554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.01  E-value=0.34  Score=49.09  Aligned_cols=253  Identities=11%  Similarity=0.105  Sum_probs=129.6

Q ss_pred             cCCCCeEEee---------ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037          244 KPGDHELTLG---------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (519)
Q Consensus       244 sp~g~~lasg---------s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~  314 (519)
                      |||+++++..         +..+.+.|+++..+....        +......+....|||+|++||-.. ++.|.+++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------CcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence            5677777663         334678888887644221        111156788899999999998875 6789999987


Q ss_pred             cCeeeceeecc-----------------CCCCceEEEeecCCCCeEEeeccCCceeeeeeec------------------
Q 010037          315 EHERLDGFDVQ-----------------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR------------------  359 (519)
Q Consensus       315 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  359 (519)
                      ++...+.-...                 -.....+.|+++....+ .+..+...+.......                  
T Consensus        72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la-~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk  150 (353)
T PF00930_consen   72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA-FLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK  150 (353)
T ss_dssp             TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE-EEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred             CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEE-EEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence            76433211111                 11234555666654332 2222222222111111                  


Q ss_pred             -cCCC--eeEEEeCCccccccccceeEe---eccCCCeeEEEEcCCC-eEEEEe--CC---CcEEEEECCCCeEEEEec-
Q 010037          360 -KSSD--LTCVVLPPKVFRLLEKPLHEF---QGHSSEVLDLSWSKNG-FLLSSS--AD---KTVRLWQVGIDRCLRVFS-  426 (519)
Q Consensus       360 -~s~~--~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~sp~~-~L~sgs--~D---g~V~lWdl~~~~~~~~~~-  426 (519)
                       +...  ..+.+++.......  .+...   ..-...+..+.|.+++ .|+..-  .+   -.+.+.|..++.+..... 
T Consensus       151 ~G~~np~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e  228 (353)
T PF00930_consen  151 AGDPNPRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE  228 (353)
T ss_dssp             TTS---EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred             CCCcCCceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence             1111  11222222211110  01111   1234467889999988 355443  32   236677887765443332 


Q ss_pred             -CCCcE---EEEEEe-eCCCCEEEEEeCCCe--EEEEEcCCCcEEeeccCCCceEE-EEEeeCCCEEE-EEecCC----e
Q 010037          427 -HNNYV---TSVAFN-PVDDNYFISGSIDGK--VRIWEVRRCQVVDYTDIREIVSA-VCYCPDGKGGI-VGTMTG----N  493 (519)
Q Consensus       427 -h~~~V---~~v~fs-p~d~~~l~sgs~Dg~--V~iwd~~~~~~~~~~~~~~~V~~-v~~spdg~~l~-sgs~dg----~  493 (519)
                       ....|   ....|. +.+..+|.....+|.  |.+++...+....+....-.|+. +.|+++++.|. ++..++    .
T Consensus       229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~  308 (353)
T PF00930_consen  229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH  308 (353)
T ss_dssp             ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred             cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence             33332   245554 635556666667774  55666777776666666666755 67888877655 454422    4


Q ss_pred             EEEEECC-CCeeeecc
Q 010037          494 CRFYDIK-GMQIFDLS  508 (519)
Q Consensus       494 v~iwdl~-~~~l~~~~  508 (519)
                      +..-++. ++.+..+.
T Consensus       309 lY~v~~~~~~~~~~LT  324 (353)
T PF00930_consen  309 LYRVSLDSGGEPKCLT  324 (353)
T ss_dssp             EEEEETTETTEEEESS
T ss_pred             EEEEEeCCCCCeEecc
Confidence            5555667 66666554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.00  E-value=0.091  Score=54.36  Aligned_cols=58  Identities=17%  Similarity=0.062  Sum_probs=40.4

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       440 d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +....+....++.|.+.+-...+.   ....+++..++.||+|++||.-..+|.+.+....
T Consensus       189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD  246 (410)
T ss_pred             CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence            445555555566666444333211   2335689999999999999999999999888754

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.13  Score=55.71  Aligned_cols=200  Identities=13%  Similarity=0.129  Sum_probs=117.5

Q ss_pred             EEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeC
Q 010037          291 KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP  370 (519)
Q Consensus       291 ~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  370 (519)
                      +|++.+..++.|+.+|.|.+.+- .-+.+..++..+..+....+..+....++++.-+...          ....+.+|+
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~----------np~llkiw~   98 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG----------NPVLLKIWD   98 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCC----------CceEEEEec
Confidence            46788889999999999887763 2233345554444422222222222333333322221          111445555


Q ss_pred             Ccccccccccee----Eeec-----cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECC--CC---eEEEEecCCCcEEEEE
Q 010037          371 PKVFRLLEKPLH----EFQG-----HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG--ID---RCLRVFSHNNYVTSVA  435 (519)
Q Consensus       371 ~~~~~~~~~~~~----~~~~-----h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~--~~---~~~~~~~h~~~V~~v~  435 (519)
                      ....+....|..    .+..     ...++.+++.+.+- .++.|-.+|.|..+.=.  ..   +..-......+||.++
T Consensus        99 lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~  178 (933)
T KOG2114|consen   99 LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA  178 (933)
T ss_pred             ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence            544332221211    1122     35678889988877 88899999999988421  11   1112223567999999


Q ss_pred             EeeCCCCEEEEEeCCCeEEEEEcCCCcE-E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          436 FNPVDDNYFISGSIDGKVRIWEVRRCQV-V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~iwd~~~~~~-~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +.. ++..++-...-..|.+|.+....+ + ....++..+++..+++....+++++ ...+.+|+..+.+
T Consensus       179 ~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  179 LRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             Eec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence            987 666522222345799999985552 2 3566777888888887666566665 3468999987644

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.98  E-value=0.075  Score=54.79  Aligned_cols=95  Identities=11%  Similarity=0.054  Sum_probs=63.2

Q ss_pred             CeEEEEeCCCcEEEEECCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc-CCCceEE-
Q 010037          400 GFLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IREIVSA-  475 (519)
Q Consensus       400 ~~L~sgs~Dg~V~lWdl~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~~~V~~-  475 (519)
                      +.|+.++.++.|..+|..+++.+-....  .....+...   .+.+++.++.+|.|.+.|..+++++.... ....+.+ 
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~  371 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSE  371 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeC
Confidence            4777788899999999998876544321  111222222   25678888999999999999999884322 2222322 


Q ss_pred             EEEeeCCCEEEEEecCCeEEEEEC
Q 010037          476 VCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       476 v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      ..+  .+..|++++.||.++.+++
T Consensus       372 P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        372 PVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CEE--ECCEEEEEeCCceEEEEeC
Confidence            222  3447889999999888764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.86  E-value=0.031  Score=61.43  Aligned_cols=118  Identities=16%  Similarity=0.216  Sum_probs=80.8

Q ss_pred             cceeEeeccCCC-eeEEEEcCC-----C-eEEEEeCCCcEEEEECCCCe--EEE----EecCCCcEEEEEEeeCCCCEEE
Q 010037          379 KPLHEFQGHSSE-VLDLSWSKN-----G-FLLSSSADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       379 ~~~~~~~~h~~~-V~~l~~sp~-----~-~L~sgs~Dg~V~lWdl~~~~--~~~----~~~h~~~V~~v~fsp~d~~~l~  445 (519)
                      +.+.++..|... |.+++-...     . ..+.|-.+..|..||.+-..  ++.    .+......+|++-..  ..+||
T Consensus       515 KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~--~G~ia  592 (794)
T PF08553_consen  515 KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE--DGYIA  592 (794)
T ss_pred             cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC--CceEE
Confidence            445666665543 555543211     2 56777788899999988642  332    222455677777664  56899


Q ss_pred             EEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       446 sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      +|+.+|.||+||--..+.- .+.+.+.+|..|..+.||++|++.+ +..+.++++
T Consensus       593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            9999999999995432222 3557789999999999999877655 567888876

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.81  E-value=0.51  Score=47.82  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             EEEEc-CCC--eEEEEeCCCcEEE--EECCCCeEEEEecCCCcEEE-EEEeeCCCCEEEEEeCC----CeEEEEEcC-CC
Q 010037          393 DLSWS-KNG--FLLSSSADKTVRL--WQVGIDRCLRVFSHNNYVTS-VAFNPVDDNYFISGSID----GKVRIWEVR-RC  461 (519)
Q Consensus       393 ~l~~s-p~~--~L~sgs~Dg~V~l--Wdl~~~~~~~~~~h~~~V~~-v~fsp~d~~~l~sgs~D----g~V~iwd~~-~~  461 (519)
                      .+.+. +++  +|.....||.-+|  ++...+.........-.|+. +.|++.++.++.++..+    ..|..-++. .+
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            45554 555  6666667776554  45566664433335566755 67788444455566653    356666777 66


Q ss_pred             cEEeeccCCCceEEEEEeeCCCEEEEEe
Q 010037          462 QVVDYTDIREIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       462 ~~~~~~~~~~~V~~v~~spdg~~l~sgs  489 (519)
                      .+..+......-..+.|+|+|++++...
T Consensus       319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  319 EPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             EEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             CeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            6666555444447899999999887644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.61  E-value=0.84  Score=46.82  Aligned_cols=196  Identities=15%  Similarity=0.181  Sum_probs=129.4

Q ss_pred             ceeecCCCCeE-EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeccc
Q 010037          240 SATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIE  315 (519)
Q Consensus       240 ~~~~sp~g~~l-asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~I~iWd~~~  315 (519)
                      .+++++.+..+ +....++.|.+.+....... ..     ...+.  ....++++|+++.+..+..   +++|.+.|-.+
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~-~~-----~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t  149 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL-GS-----IPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT  149 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCccccee-eE-----eeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence            46788888854 44555689999995432211 11     11222  4567899999987766654   57777777666


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      +.......                                                             .+ ..+ ..++
T Consensus       150 ~~~~~~~~-------------------------------------------------------------vG-~~P-~~~a  166 (381)
T COG3391         150 NKVTATIP-------------------------------------------------------------VG-NTP-TGVA  166 (381)
T ss_pred             CeEEEEEe-------------------------------------------------------------cC-CCc-ceEE
Confidence            65432211                                                             11 122 7788


Q ss_pred             EcCCC-eEE-EEeCCCcEEEEECCCCeEEE-----EecCCCcEEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCcEEe
Q 010037          396 WSKNG-FLL-SSSADKTVRLWQVGIDRCLR-----VFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD  465 (519)
Q Consensus       396 ~sp~~-~L~-sgs~Dg~V~lWdl~~~~~~~-----~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~iwd~~~~~~~~  465 (519)
                      +.|+| .++ +-..++.|.+.|.......+     .......-..+.++| ++.++......   +.+.+.|..++.+..
T Consensus       167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            99999 444 44578999999987776664     233344556789999 78766554443   599999999988885


Q ss_pred             ecc-CCC-ceEEEEEeeCCCEEEEEec-CCeEEEEECCCCeeeec
Q 010037          466 YTD-IRE-IVSAVCYCPDGKGGIVGTM-TGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       466 ~~~-~~~-~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~~~l~~~  507 (519)
                      ... ... ....+..+|+|+.+.+... .+.+.+-|..+..+...
T Consensus       246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            422 112 4677899999999888744 48899999988776553

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.59  E-value=0.49  Score=48.99  Aligned_cols=102  Identities=14%  Similarity=0.225  Sum_probs=62.4

Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      .+++..|+.||++ +++.-..+|.+.+....-.+.+..+...  .....+.|.- ++..++.-  ...|.+..       
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg-------  285 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVG-------  285 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEEC-------
Confidence            3689999999999 8888888999999987777777666533  4556677764 32222211  22333333       


Q ss_pred             eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                         .....   +.|..++..++..-.|| |||+.-...++++
T Consensus       286 ---~~~~~---~~~~~~~~~~l~~E~DG-~riit~~~~~~l~  320 (410)
T PF04841_consen  286 ---PDGDS---ISFWYDGPVILVSEIDG-VRIITSTSHEFLQ  320 (410)
T ss_pred             ---CCCCc---eEEeccCceEEeccCCc-eEEEeCCceEEEE
Confidence               12222   34444555555555566 7777766665544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.54  E-value=0.054  Score=59.64  Aligned_cols=150  Identities=9%  Similarity=0.173  Sum_probs=94.0

Q ss_pred             CCCEEEE-EeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc
Q 010037          295 DGQYLAS-GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV  373 (519)
Q Consensus       295 dg~~LaS-gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  373 (519)
                      +.++|+. ......|+-.|+..|+.+..+..+.... ...+.+....  .       .......+.+-.+..+..|++++
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~--a-------qlt~e~tflGls~n~lfriDpR~  561 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKF--A-------QLTNEQTFLGLSDNSLFRIDPRL  561 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccc--c-------ccCCCceEEEECCCceEEeccCC
Confidence            3344443 3455789999999999999988876543 2233222100  0       00011123344455666677765


Q ss_pred             cccccccee---EeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC
Q 010037          374 FRLLEKPLH---EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       374 ~~~~~~~~~---~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~  449 (519)
                      -.  .+.+.   ..........|++-..+|+||.|+.+|.|||||--..+....+. ...+|..|..+. ||+++++.+ 
T Consensus       562 ~~--~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc-  637 (794)
T PF08553_consen  562 SG--NKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-DGKWILATC-  637 (794)
T ss_pred             CC--CceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-CCcEEEEee-
Confidence            32  11111   11234567889999999999999999999999944333333333 578999999999 999888766 


Q ss_pred             CCeEEEEEc
Q 010037          450 DGKVRIWEV  458 (519)
Q Consensus       450 Dg~V~iwd~  458 (519)
                      +..|.+++.
T Consensus       638 ~tyLlLi~t  646 (794)
T PF08553_consen  638 KTYLLLIDT  646 (794)
T ss_pred             cceEEEEEE
Confidence            457778775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.53  E-value=1.2  Score=46.03  Aligned_cols=249  Identities=12%  Similarity=0.063  Sum_probs=116.9

Q ss_pred             ceeecCCCCeEEee-----ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC--------
Q 010037          240 SATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--------  306 (519)
Q Consensus       240 ~~~~sp~g~~lasg-----s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg--------  306 (519)
                      ...++|+|+++|.+     +..-.|+|+|+..+.....      .+..-.  -..+.|.++++.|+....+.        
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d------~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD------GIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE------EEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC------cccccc--cceEEEeCCCCEEEEEEeCcccccccCC
Confidence            35789999999864     3335699999986632111      122111  12389999988776654333        


Q ss_pred             ---cEEEEecccCeee--ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037          307 ---TVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (519)
Q Consensus       307 ---~I~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (519)
                         .|+.|.+.+....  ..+.........+..........+.+          ....+.....+.+.+...........
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i----------~~~~~~~~s~v~~~d~~~~~~~~~~~  269 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI----------SSSSGTSESEVYLLDLDDGGSPDAKP  269 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE----------EEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE----------EEEccccCCeEEEEeccccCCCcCCc
Confidence               3677777665432  12222222221222211111111111          11111112344444443321011122


Q ss_pred             eEeeccCCCe-eEEEEcCCC--eEEEE--eCCCcEEEEECCCCe---EE-EEecCCCcEEEEEEeeCCCCEEEEEeCCC-
Q 010037          382 HEFQGHSSEV-LDLSWSKNG--FLLSS--SADKTVRLWQVGIDR---CL-RVFSHNNYVTSVAFNPVDDNYFISGSIDG-  451 (519)
Q Consensus       382 ~~~~~h~~~V-~~l~~sp~~--~L~sg--s~Dg~V~lWdl~~~~---~~-~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg-  451 (519)
                      ..+......+ ..+... ++  ++.|-  ...+.|.-.++....   .. ..+.+...+.-..+....+.+++....++ 
T Consensus       270 ~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~  348 (414)
T PF02897_consen  270 KLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGS  348 (414)
T ss_dssp             EEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTE
T ss_pred             EEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCc
Confidence            2333333333 333333 44  33332  223566667777654   22 34456654333344442344555555555 


Q ss_pred             -eEEEEEcC-CCcEEeecc-CCCceEEEEEeeCCCEEEEE--ec--CCeEEEEECCCCeeeec
Q 010037          452 -KVRIWEVR-RCQVVDYTD-IREIVSAVCYCPDGKGGIVG--TM--TGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       452 -~V~iwd~~-~~~~~~~~~-~~~~V~~v~~spdg~~l~sg--s~--dg~v~iwdl~~~~l~~~  507 (519)
                       .|+++++. +........ ..+.|..+...+++..+...  +.  -+.+..||+.++++..+
T Consensus       349 ~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  349 SRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             EEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred             cEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence             68999999 554443332 33445666666666554432  22  35789999999887544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.50  E-value=0.00098  Score=69.06  Aligned_cols=113  Identities=16%  Similarity=0.236  Sum_probs=80.8

Q ss_pred             eccCCCeeEEEEcCCC--eEEEEe----CCCcEEEEECCCC--eEEEEe----cCCCcEEEEEEeeCCCCEEEEEeCCCe
Q 010037          385 QGHSSEVLDLSWSKNG--FLLSSS----ADKTVRLWQVGID--RCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGK  452 (519)
Q Consensus       385 ~~h~~~V~~l~~sp~~--~L~sgs----~Dg~V~lWdl~~~--~~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (519)
                      .+|....++++|++-.  .|++|-    .|..+.|||+.++  .+....    .......+++|.. +.+++++|.....
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~  177 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRS  177 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccch
Confidence            4567788999999865  666663    4677999999876  222221    1334566899996 8999999999999


Q ss_pred             EEEEEcCCCcEEeeccCCCceEEEEEee-CCCEEEEEecCCeEEEEEC
Q 010037          453 VRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       453 V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~sgs~dg~v~iwdl  499 (519)
                      +.++|++........-....+..+...| .+.++++-. ||.|.+||.
T Consensus       178 ~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~  224 (783)
T KOG1008|consen  178 VHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT  224 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence            9999999543332222333556677788 667776655 999999993

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.44  E-value=0.83  Score=43.03  Aligned_cols=193  Identities=16%  Similarity=0.144  Sum_probs=110.8

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      ...+++.|+..+.+.--|...++..-.+.      .  ...|-+-+.- -|++++.|...|.+.+.++.+|.....+...
T Consensus        22 skT~v~igSHs~~~~avd~~sG~~~We~i------l--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAI------L--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             CceEEEEecCCceEEEecCCCCcEEeehh------h--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence            34577778888888888777655432211      1  1223222222 4778999999999999999998754433221


Q ss_pred             CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE-EEEcCCC-eEE
Q 010037          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD-LSWSKNG-FLL  403 (519)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~sp~~-~L~  403 (519)
                      .                                                               .|.+ ....+++ .+.
T Consensus        93 ~---------------------------------------------------------------~vk~~a~~d~~~glIy  109 (354)
T KOG4649|consen   93 E---------------------------------------------------------------TVKVRAQCDFDGGLIY  109 (354)
T ss_pred             h---------------------------------------------------------------hhccceEEcCCCceEE
Confidence            1                                                               1111 1124455 999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEecCCCcE-EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc--EEeeccCCCceEE--EEE
Q 010037          404 SSSADKTVRLWQVGIDRCLRVFSHNNYV-TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSA--VCY  478 (519)
Q Consensus       404 sgs~Dg~V~lWdl~~~~~~~~~~h~~~V-~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~--v~~  478 (519)
                      .|+.|++.+..|.++..++...+-.+.+ .+-+.+| ....|..+...|.|.--..+...  .+-......+|.+  ++.
T Consensus       110 cgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv  188 (354)
T KOG4649|consen  110 CGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV  188 (354)
T ss_pred             EecCCCcEEEecccccceEEecccCCceeccceecC-CCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec
Confidence            9999999999999999998887633332 3345556 33334444445555544554442  2211122223322  122


Q ss_pred             eeCCCEEEEEecCCeEEEEECCCCeeeeccccceeE
Q 010037          479 CPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLF  514 (519)
Q Consensus       479 spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~~~~~~  514 (519)
                         +..+..++.||.+.-++-.+.++++..++.+++
T Consensus       189 ---~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf  221 (354)
T KOG4649|consen  189 ---GSSVIITTVDGVLTSFDESGRQVWRPATKGPIF  221 (354)
T ss_pred             ---cceEEEEEeccEEEEEcCCCcEEEeecCCCcee
Confidence               334556666777766665555666655554444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.44  E-value=0.096  Score=49.04  Aligned_cols=104  Identities=13%  Similarity=0.064  Sum_probs=81.7

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEe
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYC  479 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~s  479 (519)
                      +++.|+..+.+.--|..+++.+-.......+-+-+.-  -+++++.|+..|.+++.+.+++... .+......-......
T Consensus        25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            8889999999999999999887666556666665554  3778999999999999999999555 444333333445677


Q ss_pred             eCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          480 PDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       480 pdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +++..+..|+.|++.+..|.++...+.
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEE
Confidence            899999999999999999998766543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.40  E-value=0.011  Score=40.38  Aligned_cols=39  Identities=23%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       467 ~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ......|..++|+|...+||.|+.+|.|.+|.+...+++
T Consensus         8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw   46 (47)
T PF12894_consen    8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIW   46 (47)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCcc
Confidence            344567999999999999999999999999999655543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.35  E-value=0.29  Score=48.88  Aligned_cols=109  Identities=18%  Similarity=0.202  Sum_probs=75.5

Q ss_pred             cCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCe-EEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC--C
Q 010037          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR--C  461 (519)
Q Consensus       387 h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~-~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~--~  461 (519)
                      ..++|++|+-- +++|+.+. .+.|.+|++...+ .+..-.  ....++++...   +++++.|.....|.++..+.  .
T Consensus        87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~  161 (321)
T PF03178_consen   87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN  161 (321)
T ss_dssp             ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred             ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence            46778888866 44555544 4789999998887 554443  44467776664   56999999888888885543  3


Q ss_pred             cEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          462 QVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       462 ~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +...  .......++++.+-++++.++++..+|.+.++...
T Consensus       162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            3332  33345668999999777899999999999999886

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.12  Score=53.10  Aligned_cols=152  Identities=14%  Similarity=0.214  Sum_probs=95.5

Q ss_pred             cCCCE-EEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCc
Q 010037          294 LDGQY-LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (519)
Q Consensus       294 pdg~~-LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  372 (519)
                      .+.++ |.++..-..++-.|++.|+.+..+..+.. +..+.+.+.....         .......+.+-.+..++.|+++
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~---------Ql~~e~TlvGLs~n~vfriDpR  412 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFA---------QLTSEQTLVGLSDNSVFRIDPR  412 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchh---------cccccccEEeecCCceEEeccc
Confidence            34443 45566666788899999999988887766 3333333332110         1111222345556677778877


Q ss_pred             cccccccceeEeecc----CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEE
Q 010037          373 VFRLLEKPLHEFQGH----SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISG  447 (519)
Q Consensus       373 ~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sg  447 (519)
                      +-...  .+...++|    .....|++-..+|+++.||.+|.|||||--..+....++ ...+|..|..+. +|.+++..
T Consensus       413 v~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta-dGKwil~T  489 (644)
T KOG2395|consen  413 VQGKN--KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA-DGKWILAT  489 (644)
T ss_pred             ccCcc--eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec-cCcEEEEe
Confidence            54332  12222222    345677777778899999999999999973333333333 778899999998 88877765


Q ss_pred             eCCCeEEEEEcC
Q 010037          448 SIDGKVRIWEVR  459 (519)
Q Consensus       448 s~Dg~V~iwd~~  459 (519)
                      + +..|.+.++.
T Consensus       490 c-~tyLlLi~t~  500 (644)
T KOG2395|consen  490 C-KTYLLLIDTL  500 (644)
T ss_pred             c-ccEEEEEEEe
Confidence            5 5677777753

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.28  E-value=1.7  Score=44.97  Aligned_cols=213  Identities=16%  Similarity=0.127  Sum_probs=103.4

Q ss_pred             CEEEEEEccCCCEEEEE-eCCC----cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeecc
Q 010037          286 SILTMKFSLDGQYLASG-GEDG----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSg-s~Dg----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (519)
                      .+....++|+|++||-+ +..|    .|++.|+.+++.+... +.......+.|..++...++..........     ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~-----~~  198 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTS-----DS  198 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS------CC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccc-----cC
Confidence            34467899999988765 3333    5999999999765432 111112224554443332222211111100     01


Q ss_pred             CCCeeEEEeCCccccccccceeEeeccCC--CeeEEEEcCCC-eEE-EEeCC---CcEEEEECCCC-----eEEEEecCC
Q 010037          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-FLL-SSSAD---KTVRLWQVGID-----RCLRVFSHN  428 (519)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~-~L~-sgs~D---g~V~lWdl~~~-----~~~~~~~h~  428 (519)
                      .....+..+.......  .....+.....  ....+..++++ +|+ .....   ..|.+.++..+     .........
T Consensus       199 ~~~~~v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             GCCEEEEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             CCCcEEEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence            1122233332222111  11122333222  25678889998 444 33333   34788888875     444444444


Q ss_pred             CcEEEEEEeeCCCCEEEEEe---CCCeEEEEEcCCCcE----EeeccCCCceEEEEEeeCCCEEEEE-ecCC--eEEEEE
Q 010037          429 NYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQV----VDYTDIREIVSAVCYCPDGKGGIVG-TMTG--NCRFYD  498 (519)
Q Consensus       429 ~~V~~v~fsp~d~~~l~sgs---~Dg~V~iwd~~~~~~----~~~~~~~~~V~~v~~spdg~~l~sg-s~dg--~v~iwd  498 (519)
                      ..+....-+. ++.+++...   ..+.|.-.++.+...    ..+..+...+.-..+...+.+|+.. -.++  .|++|+
T Consensus       277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence            4454444444 444444433   246777788877652    2345555544444445555555554 4444  489999


Q ss_pred             CC-CCeeeec
Q 010037          499 IK-GMQIFDL  507 (519)
Q Consensus       499 l~-~~~l~~~  507 (519)
                      +. +.....+
T Consensus       356 ~~~~~~~~~~  365 (414)
T PF02897_consen  356 LDDGKESREI  365 (414)
T ss_dssp             TT-TEEEEEE
T ss_pred             CCCCcEEeee
Confidence            99 5554443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.27  E-value=0.081  Score=54.79  Aligned_cols=124  Identities=21%  Similarity=0.333  Sum_probs=85.2

Q ss_pred             EeeccCCCeeEEEEcCCC-eEEEE---eCC-CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCCe--EE
Q 010037          383 EFQGHSSEVLDLSWSKNG-FLLSS---SAD-KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGK--VR  454 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~-~L~sg---s~D-g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~-sgs~Dg~--V~  454 (519)
                      .+..-...+..-+|+|++ .++..   ... ..+.++++.+++..........-..-+|+| +++.|+ +...||.  |.
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEE
Confidence            334445566777899988 33222   222 459999999998877777666667789999 776665 4455664  67


Q ss_pred             EEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEec-CCe--EEEEECCCCeeeec
Q 010037          455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGN--CRFYDIKGMQIFDL  507 (519)
Q Consensus       455 iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~-dg~--v~iwdl~~~~l~~~  507 (519)
                      ++|+..++...+....+.-+.-.|+|||+.|+-.+. .|.  |.++++.+.+..++
T Consensus       266 ~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri  321 (425)
T COG0823         266 LMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL  321 (425)
T ss_pred             EEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence            778888876665555555567889999999887665 444  77778877765443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.14  E-value=1.8  Score=45.98  Aligned_cols=100  Identities=11%  Similarity=0.084  Sum_probs=64.8

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE------------------eCCCeEEEEEcCCCc
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG------------------SIDGKVRIWEVRRCQ  462 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg------------------s~Dg~V~iwd~~~~~  462 (519)
                      .++.++.+|.+...|..+++.+-.....  ...++.+|   ..++.+                  ..+|.|.-.|+.+++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            5778889999999999999988765422  11123333   222222                  246789999999998


Q ss_pred             EEeeccCC---------CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          463 VVDYTDIR---------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       463 ~~~~~~~~---------~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      .+-.....         .....-...-.+..|++++.||.++.+|..+++++
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence            87322222         11111111235678899999999999999998754

The alignment model contains an 8-bladed beta-propeller.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.99  E-value=0.44  Score=46.26  Aligned_cols=113  Identities=16%  Similarity=0.158  Sum_probs=70.6

Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE---------------EecCCCcEEEEE-EeeCCCCEEEEEeCCCeE
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR---------------VFSHNNYVTSVA-FNPVDDNYFISGSIDGKV  453 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~---------------~~~h~~~V~~v~-fsp~d~~~l~sgs~Dg~V  453 (519)
                      |..+...|+- .|++-+ |+.|.++++..-....               .+.....+...+ -....+...+......+|
T Consensus        38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI  116 (275)
T ss_pred             EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence            8888888865 443333 5999999987644333               222333454444 112233344444445699


Q ss_pred             EEEEcCCC-----cEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          454 RIWEVRRC-----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       454 ~iwd~~~~-----~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      .||.....     +...-......+..++|.  ++.|++|..+ ...+.|+.++....+
T Consensus       117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l  172 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSEL  172 (275)
T ss_pred             EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEE
Confidence            99987653     344555566889999998  5578887755 478889987765544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.89  E-value=0.026  Score=38.60  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      ...|.+++|+|...+||.|..||.|.|+.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            356999999999999999999999999998 444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.85  E-value=0.027  Score=62.18  Aligned_cols=96  Identities=22%  Similarity=0.312  Sum_probs=73.3

Q ss_pred             eEEEEeCCCcEEEEECCCCeE--EEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCc---eE
Q 010037          401 FLLSSSADKTVRLWQVGIDRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI---VS  474 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~--~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~---V~  474 (519)
                      .++.|+..|.|...|+...-.  .+-..-.++|++++|+. ++..++.|-.+|.|.+||+..+++++ +..+..+   |.
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            788999999999999877522  12223578999999999 99999999999999999999988774 3344444   44


Q ss_pred             EEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          475 AVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       475 ~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      .+.+..++..++++...|.  +|.+
T Consensus       180 ~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc--eEEE
Confidence            4556667777888888887  5655

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.78  E-value=0.6  Score=44.55  Aligned_cols=204  Identities=12%  Similarity=0.188  Sum_probs=97.5

Q ss_pred             EeecccceeecCCCC-eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      ..+.++.++|+|+.. ++++....+.|...+... . .+...    .+.+ .+..-.|++..++.++++--.++.+.+.+
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~-vlr~i----~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-K-VLRRI----PLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEE----E-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-C-EEEEE----eCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            344566799999755 666677788887777542 2 12211    1233 35677899988888777766689999998


Q ss_pred             cccCee------eceee--cc---CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037          313 VIEHER------LDGFD--VQ---DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (519)
Q Consensus       313 ~~~~~~------~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (519)
                      +.....      ...+.  ..   ......+++.+.....+++-.-....+..........  .......       ..+
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~--~~~~~~~-------~~~  163 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF--DLFVSDD-------QDL  163 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS----EEEE--------HHH
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc--ceeeccc-------ccc
Confidence            843221      11222  11   1123445555544333322111111111111101000  0000000       001


Q ss_pred             eEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCC----------CcEEEEEEeeCCCCEEEEEeC
Q 010037          382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHN----------NYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       382 ~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~----------~~V~~v~fsp~d~~~l~sgs~  449 (519)
                      .........+..++++|..  +++.+..++.|.++| ..++++..+.-.          ...-.|+|.| +|++.+++ .
T Consensus       164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs-E  240 (248)
T PF06977_consen  164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS-E  240 (248)
T ss_dssp             H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE-T
T ss_pred             ccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc-C
Confidence            1112234568889999975  777788889999999 677777766411          2578899999 88766664 4


Q ss_pred             CCeEEEE
Q 010037          450 DGKVRIW  456 (519)
Q Consensus       450 Dg~V~iw  456 (519)
                      -+..+++
T Consensus       241 pNlfy~f  247 (248)
T PF06977_consen  241 PNLFYRF  247 (248)
T ss_dssp             TTEEEEE
T ss_pred             CceEEEe
Confidence            5555443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.60  E-value=1.6  Score=44.75  Aligned_cols=117  Identities=18%  Similarity=0.218  Sum_probs=85.2

Q ss_pred             CeeEEEEcCCC-eEEEEe---CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcEE
Q 010037          390 EVLDLSWSKNG-FLLSSS---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV  464 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs---~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~~  464 (519)
                      ....++++|++ .++.+.   .++++.+.|..+.+.+....-...-..+++.| +++.++... .++.|.+.|.....+.
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence            45678889988 444443   37899999999999888865333338999999 777555544 7889999998777666


Q ss_pred             e-----eccCCCceEEEEEeeCCCEEEEEecC---CeEEEEECCCCeeeec
Q 010037          465 D-----YTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKGMQIFDL  507 (519)
Q Consensus       465 ~-----~~~~~~~V~~v~~spdg~~l~sgs~d---g~v~iwdl~~~~l~~~  507 (519)
                      .     ..........+.+.|+|+.+.+....   +.+...|..++.+...
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            4     22333445678999999976665443   5899999988877654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.46  E-value=3  Score=41.27  Aligned_cols=108  Identities=12%  Similarity=0.154  Sum_probs=68.4

Q ss_pred             eeEeeccCCCeeEEEEcCCC-eEE-EEeCCCcEEEEECCC------CeEEEEe-c-CCCcEEEEEEeeCCCCEEEEEeCC
Q 010037          381 LHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGI------DRCLRVF-S-HNNYVTSVAFNPVDDNYFISGSID  450 (519)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~~-~L~-sgs~Dg~V~lWdl~~------~~~~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~D  450 (519)
                      +..+..|-..-+.|+|+|++ .|+ +=+..+.|.-|++..      ++....+ . ..+..-.++... ++++.+++-.+
T Consensus       155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~  233 (307)
T COG3386         155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWG  233 (307)
T ss_pred             EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccC
Confidence            34444556667889999999 444 445567888887752      1111111 1 345666677777 78888655555


Q ss_pred             C-eEEEEEcCCCcEEe-eccCCCceEEEEEe-eCCCEEEEEec
Q 010037          451 G-KVRIWEVRRCQVVD-YTDIREIVSAVCYC-PDGKGGIVGTM  490 (519)
Q Consensus       451 g-~V~iwd~~~~~~~~-~~~~~~~V~~v~~s-pdg~~l~sgs~  490 (519)
                      | .|.+|+.. ++++. ..-....+++++|- |+.+.|.+.+.
T Consensus       234 g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         234 GGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            4 99999999 76664 44444778888885 45555554443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.45  E-value=0.55  Score=47.82  Aligned_cols=141  Identities=16%  Similarity=0.234  Sum_probs=68.4

Q ss_pred             cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe--------------------CCCcEEEEECCC
Q 010037          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS--------------------ADKTVRLWQVGI  418 (519)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs--------------------~Dg~V~lWdl~~  418 (519)
                      +...+.+++++...+.+.+.--. -.+....-.++-|.|.. .++|+.                    .-.++.+||+.+
T Consensus       153 G~g~Ggf~llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~  231 (461)
T PF05694_consen  153 GNGPGGFVLLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST  231 (461)
T ss_dssp             S-S--EEEEE-TTT--EEEE--S-B-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred             CCCCCcEEEEcCccccccceecc-CCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence            34445666666665554321100 01122345667777765 666654                    236799999999


Q ss_pred             CeEEEEecCC---CcEEEEEEeeC-CCC-EEEEEeCCCeEEEEEc-CCC-----cEEeecc----------C-------C
Q 010037          419 DRCLRVFSHN---NYVTSVAFNPV-DDN-YFISGSIDGKVRIWEV-RRC-----QVVDYTD----------I-------R  470 (519)
Q Consensus       419 ~~~~~~~~h~---~~V~~v~fsp~-d~~-~l~sgs~Dg~V~iwd~-~~~-----~~~~~~~----------~-------~  470 (519)
                      .+.++++...   ..+..|.|... +.. -|+.+....+|..|-- ..+     +++....          .       .
T Consensus       232 r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P  311 (461)
T PF05694_consen  232 RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP  311 (461)
T ss_dssp             TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred             CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence            9999999743   35667777541 223 3444445556665544 332     2222211          1       3


Q ss_pred             CceEEEEEeeCCCEEEEEec-CCeEEEEECCC
Q 010037          471 EIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKG  501 (519)
Q Consensus       471 ~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~  501 (519)
                      .-|+.|..|.|.++|.+++. +|.|+.||+.+
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence            45899999999999887665 89999999986

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.26  E-value=0.98  Score=38.28  Aligned_cols=108  Identities=15%  Similarity=0.175  Sum_probs=77.0

Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCC--------CeEEEEecCCCcEEEEEEeeC----CCCEEEEEeCCCeEEEEEcCCC
Q 010037          395 SWSKNG-FLLSSSADKTVRLWQVGI--------DRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~V~lWdl~~--------~~~~~~~~h~~~V~~v~fsp~----d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      .|.... .|+.++.-++|.|++...        ...+..+.-+..|++|+-.|.    ....|+.|+. ..|..||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence            344444 678888889999998653        345667777888999876663    3567777775 57999999998


Q ss_pred             cEEeeccCCCceEEEEEee----CCCEEEEEecCCeEEEEECCCCee
Q 010037          462 QVVDYTDIREIVSAVCYCP----DGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       462 ~~~~~~~~~~~V~~v~~sp----dg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      .-+-+....+.|+++.+-.    +..++++ +.+-.|.-||..+.++
T Consensus        84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEI  129 (136)
T ss_pred             chhhhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEE
Confidence            8887888888899988854    2334444 4466777788776654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.25  E-value=0.3  Score=54.28  Aligned_cols=84  Identities=19%  Similarity=0.296  Sum_probs=62.9

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      .+..++.|+..|.|...|+...-..+..   .   ..-.++|.+++|+.+|+.++.|-.+|.|.+||+..++..+.+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~---n---e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQ---N---ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhc---C---CccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            3446778888888888777642111110   0   123579999999999999999999999999999999998888887


Q ss_pred             CCCCceEEEe
Q 010037          326 DTDPSCLYFT  335 (519)
Q Consensus       326 ~~~~~~~~~~  335 (519)
                      ..+...+.+.
T Consensus       172 ~ap~t~vi~v  181 (1206)
T KOG2079|consen  172 GAPVTGVIFV  181 (1206)
T ss_pred             CCccceEEEE
Confidence            7776665543

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.19  E-value=0.55  Score=50.85  Aligned_cols=104  Identities=11%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             eeEEEEcCCC-eEEEEeCC------------CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEE--
Q 010037          391 VLDLSWSKNG-FLLSSSAD------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI--  455 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~D------------g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i--  455 (519)
                      .+.-.|+|+| .|++....            +.+.+.++..+....  .....|..+.|+| ||..++... +|+|.+  
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence            5667788886 55555422            233333444443322  3356799999999 888877765 578877  


Q ss_pred             -EEcCCCcEE-----ee-ccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          456 -WEVRRCQVV-----DY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       456 -wd~~~~~~~-----~~-~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                       -....+...     .+ ......+..+.|.+++.++ ++..++...+|.+
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence             443444311     12 2233446889999999854 5555554445543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.10  E-value=3.2  Score=39.85  Aligned_cols=201  Identities=14%  Similarity=0.222  Sum_probs=110.2

Q ss_pred             ceeecCCCCe-EEeeecCCe-EEEeeCCccccccc-cccccceeecCCCCEEEEEEccCCCEEEEEeCC-----CcEEEE
Q 010037          240 SATLKPGDHE-LTLGQRMRR-VRVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-----GTVRVW  311 (519)
Q Consensus       240 ~~~~sp~g~~-lasgs~dg~-I~vw~~~~~~~~~~-~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D-----g~I~iW  311 (519)
                      .++++|.-.. ++.+-.-|+ ..++|......... .-...+-|.+|-      .|||||.+|...-.|     |.|-||
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence            4677776543 444555565 35666654432211 122334466775      699999998765433     678888


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      |...+-                                                             ..+.++..|.-..
T Consensus       146 d~r~~f-------------------------------------------------------------qrvgE~~t~GiGp  164 (366)
T COG3490         146 DAREGF-------------------------------------------------------------QRVGEFSTHGIGP  164 (366)
T ss_pred             eccccc-------------------------------------------------------------ceecccccCCcCc
Confidence            876331                                                             1123344455555


Q ss_pred             eEEEEcCCC-eEEEE------------------eCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEE
Q 010037          392 LDLSWSKNG-FLLSS------------------SADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISG  447 (519)
Q Consensus       392 ~~l~~sp~~-~L~sg------------------s~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sg  447 (519)
                      ..+.|.++| .|+.+                  ++.-.+.+.|..++..+....     +.-.|..++..+ ++..++.+
T Consensus       165 Hev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgc  243 (366)
T COG3490         165 HEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGC  243 (366)
T ss_pred             ceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEE
Confidence            556666666 33332                  223345555655665554332     344577777777 66655544


Q ss_pred             eCCCe-----EEEEEcCCCcEEe--------eccCCCceEEEEEeeCCCEEEEEecCCe-EEEEECCCCeeeecc
Q 010037          448 SIDGK-----VRIWEVRRCQVVD--------YTDIREIVSAVCYCPDGKGGIVGTMTGN-CRFYDIKGMQIFDLS  508 (519)
Q Consensus       448 s~Dg~-----V~iwd~~~~~~~~--------~~~~~~~V~~v~~spdg~~l~sgs~dg~-v~iwdl~~~~l~~~~  508 (519)
                      -..|.     --+=-...++.++        +......|-+|+.+.+..+++..+-.|+ ..+||..++.+....
T Consensus       244 Qy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         244 QYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             EeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence            33221     1111112223222        2233456778888876666666666655 679999999886543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.10  E-value=0.054  Score=49.82  Aligned_cols=100  Identities=12%  Similarity=0.153  Sum_probs=63.6

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEE-Eec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc-CC-CceEEE
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLR-VFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IR-EIVSAV  476 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~-~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~-~~V~~v  476 (519)
                      .++.|+.+|.|.+|..+..-.+. .+. ....|-++--.-.++.+..+++.||.||.|++.-.+.+.... |. .++..+
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~  151 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL  151 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence            78999999999999877221111 111 122232322222256799999999999999999888885443 44 345555


Q ss_pred             EEeeCCCEEEEE--ecCCeEEEEECC
Q 010037          477 CYCPDGKGGIVG--TMTGNCRFYDIK  500 (519)
Q Consensus       477 ~~spdg~~l~sg--s~dg~v~iwdl~  500 (519)
                      .....+..|+.+  +.|..++.|++.
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchh
Confidence            555555566666  666666666664

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.91  E-value=0.69  Score=47.77  Aligned_cols=118  Identities=16%  Similarity=0.195  Sum_probs=78.1

Q ss_pred             cceeEeeccCCCeeEEEEcCCC---e-----EEEEeCCCcEEEEECCCCeE--EEEec-----CCCcEEEEEEeeCCCCE
Q 010037          379 KPLHEFQGHSSEVLDLSWSKNG---F-----LLSSSADKTVRLWQVGIDRC--LRVFS-----HNNYVTSVAFNPVDDNY  443 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~~---~-----L~sgs~Dg~V~lWdl~~~~~--~~~~~-----h~~~V~~v~fsp~d~~~  443 (519)
                      +.+.++.-|.. |+-+.+.|+.   .     -+.|-.|..|.-||.+-...  +....     ......|++-.  ...+
T Consensus       367 KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~  443 (644)
T KOG2395|consen  367 KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGY  443 (644)
T ss_pred             eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCce
Confidence            44555555555 6666777754   2     23456788899999874322  22221     23344555543  4679


Q ss_pred             EEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +++||.+|.||+||--..+.- .+.+...+|..|..+.||++|+..+ +..+.+-++.
T Consensus       444 IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  444 IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            999999999999998332222 4778889999999999999876544 6677777664

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.76  E-value=3.9  Score=39.47  Aligned_cols=198  Identities=14%  Similarity=0.173  Sum_probs=111.0

Q ss_pred             eecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCC-CCceEEEeecCCCCeEEeeccCCceeeeeee
Q 010037          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (519)
Q Consensus       280 l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (519)
                      +.+-+..|.++.|+|+.+.|++......-.||=-.+|+.+..+..... ....+.+..++  . +.+.-+.  ......+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n--~-fvi~dER--~~~l~~~  155 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN--Q-FVIVDER--DRALYLF  155 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC--E-EEEEehh--cceEEEE
Confidence            455566699999999999999988888888887788888887765432 22233332221  1 1111111  1111111


Q ss_pred             ccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe-EEEE--e-cC------
Q 010037          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRV--F-SH------  427 (519)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~-~~~~--~-~h------  427 (519)
                      .-..+..+.......     -++......+...-.++|.|.+ .|+.+-.-.-+.||.+.... .+..  . .+      
T Consensus       156 ~vd~~t~~~~~~~~~-----i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         156 TVDADTTVISAKVQK-----IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             EEcCCccEEeccceE-----EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            111111111111100     0111122225677889999988 88888888888888766332 1110  0 11      


Q ss_pred             -CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE--Eeecc----CC---CceEEEEEeeCCCEEEE
Q 010037          428 -NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDYTD----IR---EIVSAVCYCPDGKGGIV  487 (519)
Q Consensus       428 -~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~----~~---~~V~~v~~spdg~~l~s  487 (519)
                       -..|.++.|++..+.+++-+..++.|.-.|....-+  +.+..    ..   ...-.|+..++|.+.++
T Consensus       231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             EeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence             234778899987788888888888888888765421  11111    11   12345677777764444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.65  E-value=3.7  Score=43.63  Aligned_cols=52  Identities=25%  Similarity=0.365  Sum_probs=34.5

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEE--EEEeeCCCEEEEEecCC
Q 010037          440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA--VCYCPDGKGGIVGTMTG  492 (519)
Q Consensus       440 d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~--v~~spdg~~l~sgs~dg  492 (519)
                      .+.+++.++.||.|+.+|..+++.+-.......+.+  +.|..+|+ +.++..+|
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~-~yv~~~~g  458 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK-QYVGVMVG  458 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE-EEEEEEec
Confidence            567888899999999999999998844344444433  34455664 34444444

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.46  E-value=1.7  Score=43.07  Aligned_cols=59  Identities=14%  Similarity=0.242  Sum_probs=45.6

Q ss_pred             cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcEEeecc
Q 010037          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVVDYTD  468 (519)
Q Consensus       410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~  468 (519)
                      .|.++|+.+++.+..+.....+.+|+.+..+..+|++.+ .++.|.|||..+++.+....
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            488899999999999987778889999985555776654 57899999999999885443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.31  E-value=9  Score=41.11  Aligned_cols=55  Identities=16%  Similarity=0.166  Sum_probs=35.4

Q ss_pred             CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       451 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |.|.-+|+.+++++-......+...-...-.|.+++.++.+|.++.+|.++|+.+
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEe
Confidence            4577788888877732222222111112225557778888999999999999753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.12  E-value=2.3  Score=39.62  Aligned_cols=89  Identities=10%  Similarity=0.225  Sum_probs=60.4

Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEE--CCCCeE-----EEEecC-----CCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          391 VLDLSWSKNG--FLLSSSADKTVRLWQ--VGIDRC-----LRVFSH-----NNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       391 V~~l~~sp~~--~L~sgs~Dg~V~lWd--l~~~~~-----~~~~~h-----~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      -+.++|+.+.  ..++-+.+-+|.-||  ..++..     +..+..     .-..-.++... .|+++++.-..++|...
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence            3567787666  566777788887777  444432     222221     11122344455 78899998899999999


Q ss_pred             EcCCCcEE-eeccCCCceEEEEEee
Q 010037          457 EVRRCQVV-DYTDIREIVSAVCYCP  480 (519)
Q Consensus       457 d~~~~~~~-~~~~~~~~V~~v~~sp  480 (519)
                      |..+++++ .+.-....|+++||--
T Consensus       239 dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEecC
Confidence            99999988 4556678899999953

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.00  E-value=0.95  Score=47.49  Aligned_cols=115  Identities=17%  Similarity=0.231  Sum_probs=76.4

Q ss_pred             cCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECC-----CCeEEEEe--cC--CCc--EEEEEEeeCCCCEEEEEeCC
Q 010037          387 HSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVG-----IDRCLRVF--SH--NNY--VTSVAFNPVDDNYFISGSID  450 (519)
Q Consensus       387 h~~~V~~l~~sp~~-----~L~sgs~Dg~V~lWdl~-----~~~~~~~~--~h--~~~--V~~v~fsp~d~~~l~sgs~D  450 (519)
                      .-..|..+.|.|-+     .|++....+.|.||.+.     .++.+...  ..  .-+  -....||| ....|++-...
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~  133 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTAR  133 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecC
Confidence            34458999999953     67777778899999975     22322221  11  222  25678999 77777776665


Q ss_pred             CeEEEEEcCC--CcEEeeccCCCceEEEEEeeCCCEEEEEecCC-eEEEEECCCC
Q 010037          451 GKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKGM  502 (519)
Q Consensus       451 g~V~iwd~~~--~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg-~v~iwdl~~~  502 (519)
                      ..=.+++++.  .++..-....+.|.+.||.+||+.|+++-... .-+|||-...
T Consensus       134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            5545666654  33434456778899999999999988865432 3578886543

>PHA02713 hypothetical protein; Provisional

Probab=93.90  E-value=2.1  Score=46.30  Aligned_cols=95  Identities=5%  Similarity=-0.027  Sum_probs=55.9

Q ss_pred             CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CeEEEEEcCC-CcEEe---eccCCCceEEE
Q 010037          409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRR-CQVVD---YTDIREIVSAV  476 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D------g~V~iwd~~~-~~~~~---~~~~~~~V~~v  476 (519)
                      ..|..||..+.+....-.  +...-.+++..  ++.+.+.|+.+      ..|..||..+ .+=..   +.........+
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~  509 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI  509 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence            357788888876643332  11111122222  56777777754      2467899887 43221   22222223333


Q ss_pred             EEeeCCCEEEEEecCC--eEEEEECCCCeeeec
Q 010037          477 CYCPDGKGGIVGTMTG--NCRFYDIKGMQIFDL  507 (519)
Q Consensus       477 ~~spdg~~l~sgs~dg--~v~iwdl~~~~l~~~  507 (519)
                      ++  +|+..++|+.+|  .+..||..+++-..+
T Consensus       510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        510 LH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             EE--CCEEEEEeeecceeehhhcCcccccccch
Confidence            33  888899999998  788999988765444

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.83  E-value=0.44  Score=51.59  Aligned_cols=110  Identities=13%  Similarity=0.099  Sum_probs=66.0

Q ss_pred             CCCeeEEEEcCCC-eEEEEe------CCC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC--------
Q 010037          388 SSEVLDLSWSKNG-FLLSSS------ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID--------  450 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs------~Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D--------  450 (519)
                      ...+...+.+|+| .++..-      .|.  .|.+++... .. ..+......+.-.|+| ++..+++....        
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            3467888999999 444333      243  455555432 22 3333233488899999 87777666432        


Q ss_pred             ----CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEE---EECCCCe
Q 010037          451 ----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF---YDIKGMQ  503 (519)
Q Consensus       451 ----g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~i---wdl~~~~  503 (519)
                          +.+.+.++..+....  .....|..+.|+|||..|+... +|.|++   -....+.
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence                233333443333322  3456799999999999888765 577776   4444443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.65  E-value=3.7  Score=39.34  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=75.8

Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCC--cEEEEECCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg--~V~lWdl~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      ......+.|..++ ++-+.+.-|  .|+.+|+.+++.+....-.  ..--.++..  ++.++.-.-.++...+||..+-+
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence            3456778887777 666666655  7999999999988766532  233344444  34555555678999999999988


Q ss_pred             EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       463 ~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      .+........=..++  .||+.|+.......++++|..+.+.
T Consensus       122 ~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~  161 (264)
T PF05096_consen  122 KIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE  161 (264)
T ss_dssp             EEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred             EEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence            886545555666776  6888888888888999999887654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.52  E-value=1.1  Score=50.28  Aligned_cols=100  Identities=15%  Similarity=0.078  Sum_probs=72.0

Q ss_pred             CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      .....++.|.|.=  ..+.+..|+.|++..+... .....+.....++|++|+| .|..++.|-..|++.-|...-....
T Consensus       155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~  233 (1405)
T KOG3630|consen  155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKS  233 (1405)
T ss_pred             ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccceee
Confidence            3456788898865  6677788999998876543 2334456777899999999 9999999999999998875433111


Q ss_pred             ee----ccCCCceEEEEEeeCCCEEEEE
Q 010037          465 DY----TDIREIVSAVCYCPDGKGGIVG  488 (519)
Q Consensus       465 ~~----~~~~~~V~~v~~spdg~~l~sg  488 (519)
                      ..    ......|.+|+|-....+|++-
T Consensus       234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  234 EIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             cccCCCcCCCcceeEEEEecceeEEEEe
Confidence            11    1124679999998877776663

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.49  E-value=5.5  Score=43.16  Aligned_cols=109  Identities=18%  Similarity=0.229  Sum_probs=65.5

Q ss_pred             CC-eEEEEeCC------CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCcEE
Q 010037          399 NG-FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVV  464 (519)
Q Consensus       399 ~~-~L~sgs~D------g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg-----~V~iwd~~~~~~~  464 (519)
                      +| ..++|+.+      .+|..||..+++....-.  ....-..++.-  ++.+++.|+.|+     +|..||..+.+-.
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWT  504 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCcee
Confidence            35 55666644      457888988887655443  11111223332  678888888776     3788998887655


Q ss_pred             eeccCCCceEEEEEe-eCCCEEEEEecCC-----eEEEEECCCCeeeeccc
Q 010037          465 DYTDIREIVSAVCYC-PDGKGGIVGTMTG-----NCRFYDIKGMQIFDLST  509 (519)
Q Consensus       465 ~~~~~~~~V~~v~~s-pdg~~l~sgs~dg-----~v~iwdl~~~~l~~~~~  509 (519)
                      ...........+... -+++..++|+.||     +|..||..+++-.....
T Consensus       505 ~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  505 MVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             EcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            443333333333222 3667778888876     47888887766544433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.49  E-value=2.6  Score=42.91  Aligned_cols=98  Identities=13%  Similarity=0.076  Sum_probs=55.9

Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCC-----e--EE-EEecC-----CCcEEEEEEeeCCCCEEEEEeCC------
Q 010037          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGID-----R--CL-RVFSH-----NNYVTSVAFNPVDDNYFISGSID------  450 (519)
Q Consensus       390 ~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~-----~--~~-~~~~h-----~~~V~~v~fsp~d~~~l~sgs~D------  450 (519)
                      ....|++.+++ |+.++.....++.|....     +  .+ ..+..     ......++|.| ++.+.++-+..      
T Consensus        73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT  150 (367)
T ss_pred             CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence            45778888888 555555544444455321     1  11 22221     34477899999 88766654411      


Q ss_pred             -------------CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEe
Q 010037          451 -------------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       451 -------------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs  489 (519)
                                   |.|.-++..+++...+...-.....++|+|+|+++++-.
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                         445555555554433332233356899999998876643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.16  E-value=11  Score=38.24  Aligned_cols=252  Identities=12%  Similarity=0.080  Sum_probs=108.3

Q ss_pred             eeecCCCCeEEe-eecCCeEEEeeCCccccccccccccceeecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037          241 ATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       241 ~~~sp~g~~las-gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      -+|.++|+.|+. +..+|.-.+|-+.-...+..+      |..+. .......++|+.+.|+-......|+--|+.+.+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q------LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~  114 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ------LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE  114 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE------CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence            478899976655 444665555544322222222      22222 1122456778888877665667888889988887


Q ss_pred             eceeeccCCCCceEEEeecCCCCe-EEeeccCCceeee-------eeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          319 LDGFDVQDTDPSCLYFTINHLSQL-IPIDVDKEKIDKT-------KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ...+..+..-.....+..+..... +.+..........       ..........++.++...     .....+..-...
T Consensus       115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t-----G~~~~v~~~~~w  189 (386)
T PF14583_consen  115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT-----GERKVVFEDTDW  189 (386)
T ss_dssp             EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------EEEEEEESS-
T ss_pred             EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC-----CceeEEEecCcc
Confidence            666666655554445544433222 2221111100000       001122222333333332     112333334566


Q ss_pred             eeEEEEcCCC--eEEEEe---CCCc-EEEEECCC--CeEEEEec--CCCcEEEEEEeeCCCCEEEEEe-----CCCeEEE
Q 010037          391 VLDLSWSKNG--FLLSSS---ADKT-VRLWQVGI--DRCLRVFS--HNNYVTSVAFNPVDDNYFISGS-----IDGKVRI  455 (519)
Q Consensus       391 V~~l~~sp~~--~L~sgs---~Dg~-V~lWdl~~--~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs-----~Dg~V~i  455 (519)
                      +..+.|+|..  .|.-|-   .+.. -|||-+++  ........  ....+..=-|.| +|..+.--+     .+..|.-
T Consensus       190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~  268 (386)
T PF14583_consen  190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAG  268 (386)
T ss_dssp             EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEEE
T ss_pred             ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEEEe
Confidence            7789999987  444443   2332 36665543  22222222  233455567888 666554322     2445777


Q ss_pred             EEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCC----------------eEEEEECCCCeee
Q 010037          456 WEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG----------------NCRFYDIKGMQIF  505 (519)
Q Consensus       456 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg----------------~v~iwdl~~~~l~  505 (519)
                      +|+.+++...+... .....+.-++||++++-=+.|.                -|+++++..++..
T Consensus       269 ~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~  333 (386)
T PF14583_consen  269 YDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR  333 (386)
T ss_dssp             E-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred             eCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence            78887755433222 2345666778998765533332                4556777666543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.14  E-value=8.4  Score=36.92  Aligned_cols=156  Identities=14%  Similarity=0.097  Sum_probs=97.0

Q ss_pred             CEEEEEEccCCCEEEEEeCCC--cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCC
Q 010037          286 SILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  363 (519)
                      -...+.|..+|.++-+.|.-|  .|+.+|+.+++.......+....                                  
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F----------------------------------   91 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF----------------------------------   91 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------------------------------
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc----------------------------------
Confidence            356788877888888888777  78899999988655444322100                                  


Q ss_pred             eeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCE
Q 010037          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY  443 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~  443 (519)
                                    ++   -+..+...+..+.|          .++...+||..+-+.+..+.....=+.++.   ++..
T Consensus        92 --------------gE---Git~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~  141 (264)
T PF05096_consen   92 --------------GE---GITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKR  141 (264)
T ss_dssp             --------------EE---EEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSC
T ss_pred             --------------ce---eEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCE
Confidence                          00   01112334444444          568899999999999999986666677773   5666


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEe---eccCCC---ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          444 FISGSIDGKVRIWEVRRCQVVD---YTDIRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~~~---~~~~~~---~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      |+......+|+++|..+.+...   ......   .++-+.|- +|...|=.-....|...|..+|++..
T Consensus       142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred             EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence            7776667799999998876553   222222   34556664 66666666667778888888887654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.07  E-value=2.9  Score=45.17  Aligned_cols=109  Identities=12%  Similarity=0.116  Sum_probs=71.5

Q ss_pred             CCeeEEEEcCCCeEEE-EeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeC-CCCEEEEEeCCCeEEEEEcCC----
Q 010037          389 SEVLDLSWSKNGFLLS-SSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRR----  460 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~s-gs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~----  460 (519)
                      ..+.-+.-+.-+.++. -+...++.|||.+.+.....-  ...+.|.++.|... +++.+++.+....|.+|--..    
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            3444444444453333 344567999999988755433  45889999999541 778888888899999985421    


Q ss_pred             -----CcE---EeeccCC-CceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          461 -----CQV---VDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       461 -----~~~---~~~~~~~-~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                           ...   +....+. .+|...+|.++|.+++.++  +.+.|+|-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence                 111   2233343 6799999999997555443  46778764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.03  E-value=12  Score=38.52  Aligned_cols=75  Identities=15%  Similarity=0.141  Sum_probs=51.9

Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEee----C----------------CCEE-
Q 010037          428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCP----D----------------GKGG-  485 (519)
Q Consensus       428 ~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~sp----d----------------g~~l-  485 (519)
                      ...+.+|+.+| ++++.++...=|.|.++|+.++.++. |++.++.=  +.|-.    .                ..+| 
T Consensus       307 ~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  307 KREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             CceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEE
Confidence            34588999999 78988888778999999999988774 55554431  11110    0                1123 


Q ss_pred             EEEecCCeEEEEECCCCeee
Q 010037          486 IVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       486 ~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +-+-.-|.|.||.++.+..+
T Consensus       384 IyaprRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRV  403 (415)
T ss_pred             EEeccCCeEEEEecCCCCEE
Confidence            33566899999999877643

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.02  E-value=0.38  Score=44.42  Aligned_cols=66  Identities=18%  Similarity=0.148  Sum_probs=41.7

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEE-EccCCCEEEEEeCCCcEEEEecccCe
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK-FSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~-fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      -+..+++|+.+|.|.+|++....... ..     +..-..+|.++- --.++.+..+++.||.|+.|++.-++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~-d~-----~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k  135 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHS-DR-----VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK  135 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHH-Hh-----hhcccccceeccccccccceeEEeccCCceeeeccccCc
Confidence            34578899999999999987322111 11     111223343332 22355688899999999999986554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.94  E-value=1.8  Score=47.96  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=28.1

Q ss_pred             ccCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCC
Q 010037          386 GHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGI  418 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~----~L~sgs~Dg~V~lWdl~~  418 (519)
                      .+...|..+.|+|.+    .|+.-+.|+++|+||+..
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            345689999999963    888999999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.81  E-value=4.4  Score=44.92  Aligned_cols=80  Identities=14%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCcc----------cc--cccccccccee--ecCCCCEEEEEEccC---CCEE
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQ----------SR--ELSSLYTGQEF--LAHEGSILTMKFSLD---GQYL  299 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~----------~~--~~~~~~~~~~l--~~H~~~I~~l~fspd---g~~L  299 (519)
                      .|..+.++|+|.+||..+..|.+.+ .+...          ..  ..........+  ..+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            3445789999999999887665444 33321          01  00111111111  234568999999995   5789


Q ss_pred             EEEeCCCcEEEEecccCe
Q 010037          300 ASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       300 aSgs~Dg~I~iWd~~~~~  317 (519)
                      +.-..|+++|+||+....
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            999999999999996543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.78  E-value=20  Score=40.30  Aligned_cols=114  Identities=11%  Similarity=0.171  Sum_probs=77.4

Q ss_pred             CeeEEEEcCC-C-eEEEEe----------CCCcEEEEECCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          390 EVLDLSWSKN-G-FLLSSS----------ADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       390 ~V~~l~~sp~-~-~L~sgs----------~Dg~V~lWdl~~~~~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                      .|.++.|..+ + +++.|+          ..|.|.|+.+.....++..   .-.+.|.++..-  +++++|.  .+..|+
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vr  851 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVR  851 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEE
Confidence            3445557776 4 777765          3477888887764444333   245666666543  4666654  567899


Q ss_pred             EEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC--CCeeeec
Q 010037          455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK--GMQIFDL  507 (519)
Q Consensus       455 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~--~~~l~~~  507 (519)
                      +|+..+.+.+ .-..+..++.++...-.|..+++|..-+++.+...+  .|.++.+
T Consensus       852 Lye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev  907 (1096)
T KOG1897|consen  852 LYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV  907 (1096)
T ss_pred             EEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence            9999998655 456677889999999999999999988876655444  4445543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.41  E-value=22  Score=39.95  Aligned_cols=114  Identities=13%  Similarity=0.064  Sum_probs=69.4

Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeC--CCC---EEEEEeCCCeEEEEEc-CCC
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV--DDN---YFISGSIDGKVRIWEV-RRC  461 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~--d~~---~l~sgs~Dg~V~iwd~-~~~  461 (519)
                      ++....+-+. .++.++.++.+...++..+......  .....|.|+.++|.  ..+   +++.|..+..+.+.-. .+.
T Consensus       490 ~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~  569 (1096)
T KOG1897|consen  490 ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL  569 (1096)
T ss_pred             eEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc
Confidence            3333333444 6666666676766666655522222  24678999999985  334   8889988776555433 333


Q ss_pred             cEEe-----eccCCCceEEEEEeeCCCEEEEEecCCeEEEE--ECCCCee
Q 010037          462 QVVD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY--DIKGMQI  504 (519)
Q Consensus       462 ~~~~-----~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw--dl~~~~l  504 (519)
                      ..+.     .......|.-.++--|+.+|.++..||.+.-|  |..++++
T Consensus       570 ~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l  619 (1096)
T KOG1897|consen  570 ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL  619 (1096)
T ss_pred             ceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence            3332     12223345556676778999999999997655  4555544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.39  E-value=1  Score=42.18  Aligned_cols=61  Identities=11%  Similarity=0.252  Sum_probs=48.5

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCcEEee-------c--------cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          440 DDNYFISGSIDGKVRIWEVRRCQVVDY-------T--------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       440 d~~~l~sgs~Dg~V~iwd~~~~~~~~~-------~--------~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .+.++++-+.+|.+++||+.+++.+..       .        .....|..+.++.+|.-|++-+ +|..+.|+..=
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            788999999999999999999876521       1        3556789999999998777655 58889998753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.98  E-value=9  Score=42.02  Aligned_cols=108  Identities=10%  Similarity=0.108  Sum_probs=74.7

Q ss_pred             eeEEEEcCCC---eEEEEeCCCcEEEEECCC-------C-------------eEEEEecCCCcEEEEEEe--eCCCCEEE
Q 010037          391 VLDLSWSKNG---FLLSSSADKTVRLWQVGI-------D-------------RCLRVFSHNNYVTSVAFN--PVDDNYFI  445 (519)
Q Consensus       391 V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~-------~-------------~~~~~~~h~~~V~~v~fs--p~d~~~l~  445 (519)
                      |+-|....=|   .|+.|..||.|.+|.+++       .             ++...+.....++.++++  . ..+++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEE
Confidence            4444443322   899999999999996521       0             122233356688999998  6 778899


Q ss_pred             EEeCCCeEEEEEcCCC--cEE--eeccCCCceEEEEEeeCC---C---EEEEEecCCeEEEEEC
Q 010037          446 SGSIDGKVRIWEVRRC--QVV--DYTDIREIVSAVCYCPDG---K---GGIVGTMTGNCRFYDI  499 (519)
Q Consensus       446 sgs~Dg~V~iwd~~~~--~~~--~~~~~~~~V~~v~~spdg---~---~l~sgs~dg~v~iwdl  499 (519)
                      +++....|.||-....  +..  ....+..-|.+|+|-++.   .   .|++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9888888888865442  211  122356678899998744   2   6788899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=91.93  E-value=19  Score=40.47  Aligned_cols=68  Identities=15%  Similarity=0.088  Sum_probs=50.7

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec----cCC----------------CceEEEEEeeCCCEEE
Q 010037          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DIR----------------EIVSAVCYCPDGKGGI  486 (519)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~----~~~----------------~~V~~v~~spdg~~l~  486 (519)
                      ....|.+|+... -+.+++....||+|.++|..+.+.+...    ...                ..+..++|||.+..++
T Consensus       258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v  336 (753)
T PF11635_consen  258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV  336 (753)
T ss_pred             cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence            446678888776 7788999999999999998876544222    111                1234578999999999


Q ss_pred             EEecCCeEE
Q 010037          487 VGTMTGNCR  495 (519)
Q Consensus       487 sgs~dg~v~  495 (519)
                      .-..+|.+.
T Consensus       337 ~~~~~~~~~  345 (753)
T PF11635_consen  337 QIDEDGKTK  345 (753)
T ss_pred             EEecCCCce
Confidence            999999865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.84  E-value=0.54  Score=31.29  Aligned_cols=31  Identities=26%  Similarity=0.352  Sum_probs=25.8

Q ss_pred             CCEEEEEEccCC---CEEEEEeCCCcEEEEeccc
Q 010037          285 GSILTMKFSLDG---QYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       285 ~~I~~l~fspdg---~~LaSgs~Dg~I~iWd~~~  315 (519)
                      ++|.+++|+|+.   .+|+-+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            478999999844   4888887789999999985

It contains a characteristic DLL sequence motif.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.53  E-value=9.4  Score=39.77  Aligned_cols=37  Identities=14%  Similarity=0.312  Sum_probs=29.4

Q ss_pred             CCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEEEEe
Q 010037          389 SEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVF  425 (519)
Q Consensus       389 ~~V~~l~~sp~~----~L~sgs~Dg~V~lWdl~~~~~~~~~  425 (519)
                      -.+...+|+|+.    .|+.-+.|.+|||||+...+.+...
T Consensus       166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence            356778999976    8888889999999999887665433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.47  E-value=17  Score=36.50  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=46.9

Q ss_pred             EEEEecCCCcEEEEEEeeC------CCCEEEEEeCCCeEEEEEcCCCc-EE---e-eccCCCceEEEEEeeCCCEEEEEe
Q 010037          421 CLRVFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRCQ-VV---D-YTDIREIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       421 ~~~~~~h~~~V~~v~fsp~------d~~~l~sgs~Dg~V~iwd~~~~~-~~---~-~~~~~~~V~~v~~spdg~~l~sgs  489 (519)
                      ++..+.+...++.+.|.+.      .+.+|++.-..+.|....+.... +.   . .......+..+++.|||.++++-.
T Consensus       245 P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d  324 (331)
T PF07995_consen  245 PVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD  324 (331)
T ss_dssp             -SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred             cceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence            3344556677888888752      34566666666788888887543 22   1 233445799999999999888877


Q ss_pred             cCCeEE
Q 010037          490 MTGNCR  495 (519)
Q Consensus       490 ~dg~v~  495 (519)
                      .+|.|+
T Consensus       325 ~~G~iy  330 (331)
T PF07995_consen  325 SDGKIY  330 (331)
T ss_dssp             TTTTEE
T ss_pred             CCCeEe
Confidence            788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.28  E-value=3.9  Score=40.47  Aligned_cols=109  Identities=14%  Similarity=0.115  Sum_probs=71.0

Q ss_pred             ccceeecCCCCeEEeeec-CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeccc
Q 010037          238 HGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIE  315 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~-dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg-~I~iWd~~~  315 (519)
                      -+.++|+||++.+..... .+.|.-+++...............+..+.+..-.++...+|.+-+++..+| .|.+|+.. 
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-  243 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-  243 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence            346999999987776654 488888887641111111111111223445666778888888775554444 89999998 


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeec
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDV  347 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (519)
                      ++.+..+..+...++++.|-....+.++....
T Consensus       244 G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         244 GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            99999998887777777776665555554443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.97  E-value=0.51  Score=52.88  Aligned_cols=111  Identities=14%  Similarity=0.140  Sum_probs=78.8

Q ss_pred             CeeEEEEcCCC---eEEEEeCCCcEEEEECCCCe--------EEEEe----cCCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGIDR--------CLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       390 ~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~--------~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                      .|..+...+++   .++..+++-.|..||+++-.        +++.-    .....+.++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            44555555665   34444555678899987532        12111    14456789999996566677888899999


Q ss_pred             EEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       455 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +.-+...... ........+++++|+|-|+.+++|-..|++.-|...
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence            9887654333 334667789999999999999999999999888764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=90.93  E-value=14  Score=37.47  Aligned_cols=97  Identities=8%  Similarity=0.022  Sum_probs=51.5

Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEe----------------------C
Q 010037          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGS----------------------I  449 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~-d~~~l~sgs----------------------~  449 (519)
                      .++|++ .++-......|+-.|+.+.+....+. ....+-...|... ++..++..-                      .
T Consensus        87 ~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p  166 (386)
T PF14583_consen   87 FLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP  166 (386)
T ss_dssp             EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred             EEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence            344555 44444455677777888876655554 4445545666432 333332211                      1


Q ss_pred             CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC
Q 010037          450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT  491 (519)
Q Consensus       450 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d  491 (519)
                      ...|.--|+.+++.-........+..+.|+|....+++-+..
T Consensus       167 ~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHE  208 (386)
T PF14583_consen  167 HCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHE  208 (386)
T ss_dssp             -EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-
T ss_pred             CceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEecc
Confidence            123555677787776666677788889999966666665443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.78  E-value=18  Score=35.67  Aligned_cols=107  Identities=12%  Similarity=0.213  Sum_probs=58.4

Q ss_pred             cCCCeeEEEEcCCCeEEEEeCCCcEEEEEC-CCCeEEEE--ec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRV--FS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       387 h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl-~~~~~~~~--~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      -...|..|.|.|++.|......+.|+.=+. ........  ..   ....+..++|.+ +....++|+. |.| +.....
T Consensus       185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~-G~l-~~S~Dg  261 (302)
T PF14870_consen  185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGS-GTL-LVSTDG  261 (302)
T ss_dssp             SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEEST-T-E-EEESST
T ss_pred             ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeCC-ccE-EEeCCC
Confidence            356799999999995555558888888772 22221111  11   233489999998 7777776664 433 334444


Q ss_pred             CcEEe----eccCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037          461 CQVVD----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (519)
Q Consensus       461 ~~~~~----~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw  497 (519)
                      ++--+    .......++.|.|.++.+.++.| .+|.+.-|
T Consensus       262 GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  262 GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             TSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             CccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence            54332    22345568899998876666654 58877655

>PHA03098 kelch-like protein; Provisional

Probab=90.76  E-value=13  Score=39.92  Aligned_cols=96  Identities=17%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             CcEEEEECCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCC--------CeEEEEEcCCCcEEeecc---CCCceEE
Q 010037          409 KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSID--------GKVRIWEVRRCQVVDYTD---IREIVSA  475 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~D--------g~V~iwd~~~~~~~~~~~---~~~~V~~  475 (519)
                      ..+..||..+++....-..  ...-.+++. . ++.+++.|+.+        ..+.+||..+.+-.....   .......
T Consensus       406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~  483 (534)
T PHA03098        406 KTVECFSLNTNKWSKGSPLPISHYGGCAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL  483 (534)
T ss_pred             ceEEEEeCCCCeeeecCCCCccccCceEEE-E-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE
Confidence            4578889887765443221  111112222 2 56677777643        238889988765332221   1111122


Q ss_pred             EEEeeCCCEEEEEecC-----CeEEEEECCCCeeeecc
Q 010037          476 VCYCPDGKGGIVGTMT-----GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       476 v~~spdg~~l~sgs~d-----g~v~iwdl~~~~l~~~~  508 (519)
                      +.  .+++.++.|+.+     ..|.+||..+++-..+.
T Consensus       484 ~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  519 (534)
T PHA03098        484 CI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC  519 (534)
T ss_pred             EE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence            22  377777787764     47899999887654443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.71  E-value=6.7  Score=42.99  Aligned_cols=71  Identities=20%  Similarity=0.350  Sum_probs=50.7

Q ss_pred             CCCeeEEEEc--CCC-eEEEEeCCCcEEEEECCCC--eEE--EEecCCCcEEEEEEeeCC--CC---EEEEEeCCCeEEE
Q 010037          388 SSEVLDLSWS--KNG-FLLSSSADKTVRLWQVGID--RCL--RVFSHNNYVTSVAFNPVD--DN---YFISGSIDGKVRI  455 (519)
Q Consensus       388 ~~~V~~l~~s--p~~-~L~sgs~Dg~V~lWdl~~~--~~~--~~~~h~~~V~~v~fsp~d--~~---~l~sgs~Dg~V~i  455 (519)
                      ...+++++++  ... +||.+++...|.||-....  +..  ....+...|-+|+|-+.+  +.   .+++++..|.+.+
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~  242 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT  242 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence            3478899998  555 7778888888888755432  111  123367789999998743  22   7888999999999


Q ss_pred             EEc
Q 010037          456 WEV  458 (519)
Q Consensus       456 wd~  458 (519)
                      |++
T Consensus       243 ~~I  245 (717)
T PF08728_consen  243 FKI  245 (717)
T ss_pred             EEE
Confidence            888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.57  E-value=16  Score=38.71  Aligned_cols=97  Identities=13%  Similarity=0.156  Sum_probs=59.6

Q ss_pred             eEEEEcCCC-eEEEEeCCCcEEEEECCC--CeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcEE---
Q 010037          392 LDLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV---  464 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs~Dg~V~lWdl~~--~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~~---  464 (519)
                      ..+.|+|.. .|+.-.....-.+++++.  .+....+...+.|.|.+|.+ ||+.|+.+- ..=.-+|||-......   
T Consensus       116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~~Cs  194 (671)
T PF15390_consen  116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLHRCS  194 (671)
T ss_pred             CcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhhhCC
Confidence            356799988 555545444445566654  34445566888999999999 777665543 3346788986654322   


Q ss_pred             --eeccCCCceEEEEEeeCCCEEEEEec
Q 010037          465 --DYTDIREIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       465 --~~~~~~~~V~~v~~spdg~~l~sgs~  490 (519)
                        ...+..+.|.++.-.-|.+ +|+++.
T Consensus       195 fcPVFdv~~~Icsi~AT~dsq-VAvaTE  221 (671)
T PF15390_consen  195 FCPVFDVGGYICSIEATVDSQ-VAVATE  221 (671)
T ss_pred             cceeecCCCceEEEEEeccce-EEEEec
Confidence              2444556677666555543 555553

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.32  E-value=0.89  Score=30.28  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=26.9

Q ss_pred             CcEEEEEEeeCCC--CEEEEEeCCCeEEEEEcCC
Q 010037          429 NYVTSVAFNPVDD--NYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       429 ~~V~~v~fsp~d~--~~l~sgs~Dg~V~iwd~~~  460 (519)
                      +.|.++.|+|..+  .+|+..-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998455  6888888889999999995

It contains a characteristic DLL sequence motif.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.18  E-value=5.9  Score=38.28  Aligned_cols=115  Identities=10%  Similarity=0.173  Sum_probs=84.2

Q ss_pred             eccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       385 ~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      .+-...+.++.|+|+. .|++..+...-.||=...|+.++++.  .-...-.|.+.. ++++.++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence            3444559999999998 77777777777888778899998886  222345567776 6777777777888988887654


Q ss_pred             c-EE-------e--eccC-CCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          462 Q-VV-------D--YTDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       462 ~-~~-------~--~~~~-~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      . .+       .  ...+ +...-.++|.|....|.++-...=+.||.+.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            2 11       1  1122 4557789999999999999888878888765

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.05  E-value=3.3  Score=47.72  Aligned_cols=76  Identities=14%  Similarity=0.136  Sum_probs=48.2

Q ss_pred             EeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      .+.-|...+.+..+.....++.+..-+.+-+|+.........+.    +....+.+ ++..++++..||.+..||...++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~v~~h~Dgs~~fWd~s~g~  267 (993)
T KOG1983|consen  193 GLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYL----PNGQLESR-DGSHFVSYHTDGSYAFWDVSSGK  267 (993)
T ss_pred             cccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcc----cccccCcc-CCceEEEEEecCCEEeeecCCCc
Confidence            34445566666666555545555556677777655444333332    11111266 89999999999999999999875


Q ss_pred             E
Q 010037          463 V  463 (519)
Q Consensus       463 ~  463 (519)
                      .
T Consensus       268 ~  268 (993)
T KOG1983|consen  268 L  268 (993)
T ss_pred             e
Confidence            4

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=89.81  E-value=4.4  Score=38.92  Aligned_cols=109  Identities=20%  Similarity=0.225  Sum_probs=69.2

Q ss_pred             CeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE-cCCCc--EE
Q 010037          390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQ--VV  464 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs-~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd-~~~~~--~~  464 (519)
                      .+...++++++ .++... .++.-.||-...+...........++.-.|++ ++...+....+...+++. ...+.  .+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            68899999999 444433 33444444444444333333344788889999 777777777677777774 33332  22


Q ss_pred             --eeccCCCceEEEEEeeCCCEEEEEe---cCCeEEEEEC
Q 010037          465 --DYTDIREIVSAVCYCPDGKGGIVGT---MTGNCRFYDI  499 (519)
Q Consensus       465 --~~~~~~~~V~~v~~spdg~~l~sgs---~dg~v~iwdl  499 (519)
                        .+......|+++.++|||..++...   .++.|.+--+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence              2332233899999999999887765   3466776654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.69  E-value=1.6  Score=40.94  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=55.1

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceee-------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-------AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~-------~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      +.+...+++|++-+.+|.+++||+.+.+..+........+.       .....|..+.++.+|.-|++-+ +|....|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            34667889999999999999999998877665433222232       3567899999999998777765 578899986


Q ss_pred             c
Q 010037          314 I  314 (519)
Q Consensus       314 ~  314 (519)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.58  E-value=0.052  Score=58.83  Aligned_cols=163  Identities=19%  Similarity=0.262  Sum_probs=86.1

Q ss_pred             ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEE-----------EEccCCCEEEEEeCCCcEEEE
Q 010037          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM-----------KFSLDGQYLASGGEDGTVRVW  311 (519)
Q Consensus       243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l-----------~fspdg~~LaSgs~Dg~I~iW  311 (519)
                      |-++..++..+-.++.|++.++.....        ..+.+|...+..+           ..||||+.+|.+..||.++.|
T Consensus       191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  191 IAVNKVYICYGLKGGEIRLLNINRALR--------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             cccccceeeeccCCCceeEeeechHHH--------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            445667888888999999988764332        1234465554443           368999999999999999999


Q ss_pred             ecc-c----CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc----cccee
Q 010037          312 KVI-E----HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL----EKPLH  382 (519)
Q Consensus       312 d~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~----~~~~~  382 (519)
                      .+. +    ..|+..++.+......+..+.++.....  ..   ........+...+....+|....|...    ...+.
T Consensus       263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v--~i---~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~  337 (1283)
T KOG1916|consen  263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVV--SI---GKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQ  337 (1283)
T ss_pred             eeeeeccccHhhhhccCCCCCCCceeeeeccccccCC--cc---ceeEEEEecccCCcceeEeeccchhhhhhhcccceE
Confidence            873 2    2344444545433333332222211111  11   111112222333444555555544432    11122


Q ss_pred             EeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC
Q 010037          383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI  418 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~  418 (519)
                      ....|.+.|+.+....--  .+++-+.+++|++|.-+.
T Consensus       338 iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  338 IVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             eecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            223344455443322211  455567788899986443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=88.82  E-value=0.4  Score=52.34  Aligned_cols=61  Identities=11%  Similarity=0.133  Sum_probs=31.6

Q ss_pred             cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeccc
Q 010037          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      .-|...||++.--..++..-........-...+.-|.|+|   +.-++..+-.++.|++..+.+
T Consensus       151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r  214 (1283)
T KOG1916|consen  151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR  214 (1283)
T ss_pred             HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeech
Confidence            3467788887643322221111111222223344555555   556666666778888776644

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.52  E-value=13  Score=40.47  Aligned_cols=70  Identities=14%  Similarity=0.275  Sum_probs=46.9

Q ss_pred             cCCCeeEEEEcC--CC-eEEEEeCCCcEEEEECC---------CCeEEEEec---C-CCcEEEEEEeeCCCCEEEEEeCC
Q 010037          387 HSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVG---------IDRCLRVFS---H-NNYVTSVAFNPVDDNYFISGSID  450 (519)
Q Consensus       387 h~~~V~~l~~sp--~~-~L~sgs~Dg~V~lWdl~---------~~~~~~~~~---h-~~~V~~v~fsp~d~~~l~sgs~D  450 (519)
                      ..+.|.++.|..  ++ .+++.+..+.|.+|--.         +-.+++.+.   + ..+|.+..|.+ +|.+++..  +
T Consensus        71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--G  147 (631)
T PF12234_consen   71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--G  147 (631)
T ss_pred             CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--C
Confidence            457788888864  55 78888888889888531         123444442   3 36799999998 67655543  3


Q ss_pred             CeEEEEEcC
Q 010037          451 GKVRIWEVR  459 (519)
Q Consensus       451 g~V~iwd~~  459 (519)
                      .++.|+|-.
T Consensus       148 Nqlfv~dk~  156 (631)
T PF12234_consen  148 NQLFVFDKW  156 (631)
T ss_pred             CEEEEECCC
Confidence            578888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.40  E-value=12  Score=34.67  Aligned_cols=109  Identities=16%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEECC--CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---C---eEEEE-EcCC---
Q 010037          393 DLSWSKNGFLLSSSADKTVRLWQVG--IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---G---KVRIW-EVRR---  460 (519)
Q Consensus       393 ~l~~sp~~~L~sgs~Dg~V~lWdl~--~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g---~V~iw-d~~~---  460 (519)
                      .++-.+.+.|+.+...+.|.+|++.  ..+++..|..-+.|..+.++. .|+|++|--.+   .   .+|+| |.+.   
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~  100 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE  100 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence            3333443444444666789999988  446677788778999999999 89999985432   2   56776 2211   


Q ss_pred             -CcEE--ee---------------------ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          461 -CQVV--DY---------------------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       461 -~~~~--~~---------------------~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                       .+.+  ..                     ......+.+++..|-.--|++|+ ++++.+|.+..+.
T Consensus       101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen  101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence             1111  11                     12244577888888444466666 4578899876443

>PRK13684 Ycf48-like protein; Provisional

Probab=87.53  E-value=30  Score=34.66  Aligned_cols=107  Identities=10%  Similarity=0.070  Sum_probs=61.2

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      ...++++.+.+++.++..+..|.+++=....+..-....     ....++.+.+.| ++..+++| .+|.|. .....++
T Consensus       214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~G~  290 (334)
T PRK13684        214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDGGK  290 (334)
T ss_pred             cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCCCC
Confidence            346778888888844444566766532233333222111     224578899998 66666555 566554 3344333


Q ss_pred             EEee----ccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          463 VVDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       463 ~~~~----~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      .-..    .......+.+.|..+++.++ .+..|.|--|+
T Consensus       291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        291 TWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             CCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            3221    22234577888887777655 45578877765

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.28  E-value=11  Score=42.27  Aligned_cols=107  Identities=12%  Similarity=0.117  Sum_probs=68.7

Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEecCCCc---------EEEEEEee---------------CCCCEEEEEeCCCeEE
Q 010037          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY---------VTSVAFNP---------------VDDNYFISGSIDGKVR  454 (519)
Q Consensus       399 ~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~---------V~~v~fsp---------------~d~~~l~sgs~Dg~V~  454 (519)
                      ++.|+.++.++.|.-.|..+++.+-.+.....         ...+.+..               ..+..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            44788888888999999999988877753222         12233321               1234788888999999


Q ss_pred             EEEcCCCcEEeeccCCCceE-------------EEEEee--CCCEEEEEec----------CCeEEEEECCCCeee
Q 010037          455 IWEVRRCQVVDYTDIREIVS-------------AVCYCP--DGKGGIVGTM----------TGNCRFYDIKGMQIF  505 (519)
Q Consensus       455 iwd~~~~~~~~~~~~~~~V~-------------~v~~sp--dg~~l~sgs~----------dg~v~iwdl~~~~l~  505 (519)
                      -.|..+++........+.|.             .+.-.|  .+..+++|+.          +|.|+-||+++|++.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            99999998874322222210             111112  2335666643          689999999998753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.73  E-value=49  Score=35.53  Aligned_cols=97  Identities=11%  Similarity=0.067  Sum_probs=61.6

Q ss_pred             CCcEEEEECCCCeEEEEec--CCC------------------------------cE-EEEEEeeCCCCEEEEEeCC----
Q 010037          408 DKTVRLWQVGIDRCLRVFS--HNN------------------------------YV-TSVAFNPVDDNYFISGSID----  450 (519)
Q Consensus       408 Dg~V~lWdl~~~~~~~~~~--h~~------------------------------~V-~~v~fsp~d~~~l~sgs~D----  450 (519)
                      ++.|.-+|..+++.+-.+.  ...                              .+ ..+++.| ..++++.+..+    
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~  258 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPW  258 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCC
Confidence            6889999999998876653  100                              11 1346666 45555555422    


Q ss_pred             -C-----------eEEEEEcCCCcEE-e--eccCCC-------ceEEEEEeeCCC---EEEEEecCCeEEEEECCCCeee
Q 010037          451 -G-----------KVRIWEVRRCQVV-D--YTDIRE-------IVSAVCYCPDGK---GGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       451 -g-----------~V~iwd~~~~~~~-~--~~~~~~-------~V~~v~~spdg~---~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                       +           .|.-.|++++++. +  ...|..       ...-+.+..+|+   .++.+..+|.+++.|-.+++++
T Consensus       259 ~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       259 NSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence             2           5667788888877 2  222211       112233335776   7888999999999999999885

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=86.66  E-value=22  Score=36.17  Aligned_cols=71  Identities=4%  Similarity=0.020  Sum_probs=37.1

Q ss_pred             ccceeecCCCCeEEeee-----------cCC-eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037          238 HGSATLKPGDHELTLGQ-----------RMR-RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs-----------~dg-~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D  305 (519)
                      ...++|.++|.++++-.           ..+ +|.+++-....-...   ....+...-.....|++.++| .++ +...
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---KSNVFAEELSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---eeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence            34589999999887742           223 777775432221111   111222233445788999888 444 3444


Q ss_pred             CcEEEEec
Q 010037          306 GTVRVWKV  313 (519)
Q Consensus       306 g~I~iWd~  313 (519)
                      ...++.+.
T Consensus        91 ~i~~~~d~   98 (367)
T TIGR02604        91 DILFLRDK   98 (367)
T ss_pred             eEEEEeCC
Confidence            33333343

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=86.53  E-value=22  Score=37.01  Aligned_cols=153  Identities=12%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             ccCCCEEE-EEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCC
Q 010037          293 SLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP  371 (519)
Q Consensus       293 spdg~~La-Sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  371 (519)
                      ..+..+|+ .|+.-..++--|+..|+.+..+..+...  .+.+.+.....         .......+.+-.+..+..+++
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~---------qmt~eqtlvGlS~~svFrIDP  544 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQ---------QMTDEQTLVGLSDYSVFRIDP  544 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHH---------hcCccceEEeecccceEEecc
Confidence            34555444 4555567777888888888887776554  23333221100         000111122333444444554


Q ss_pred             ccccccccceeEee--ccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe
Q 010037          372 KVFRLLEKPLHEFQ--GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS  448 (519)
Q Consensus       372 ~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs  448 (519)
                      ++..- .-.+...+  .......+..-..+|+++.++..|-|++||--..+....++ ....|..|.... +|.++++.+
T Consensus       545 R~~gN-Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-~Gk~ilaTC  622 (776)
T COG5167         545 RARGN-KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-NGKHILATC  622 (776)
T ss_pred             cccCC-ceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeec-CCcEEEEee
Confidence            43220 00011111  11223344444556799999999999999954333333333 567788888888 888777766


Q ss_pred             CCCeEEEEEcC
Q 010037          449 IDGKVRIWEVR  459 (519)
Q Consensus       449 ~Dg~V~iwd~~  459 (519)
                      . ..|.+-|++
T Consensus       623 k-~yllL~d~~  632 (776)
T COG5167         623 K-NYLLLTDVP  632 (776)
T ss_pred             c-ceEEEEecc
Confidence            4 477777765

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.52  E-value=27  Score=32.23  Aligned_cols=154  Identities=17%  Similarity=0.227  Sum_probs=81.1

Q ss_pred             CCCEEEEEeCC--CcEEEEecccCeeeceeeccCCCCc---------eEEEeecCCCCeEEe-----------eccCCc-
Q 010037          295 DGQYLASGGED--GTVRVWKVIEHERLDGFDVQDTDPS---------CLYFTINHLSQLIPI-----------DVDKEK-  351 (519)
Q Consensus       295 dg~~LaSgs~D--g~I~iWd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----------~~~~~~-  351 (519)
                      +|.++.+.+.-  ..|++||+.+++.+..-.+......         .++.........+..           ...+.. 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            55677776653  4699999998887766655521100         000000011111111           111111 


Q ss_pred             ---eeeeeeeccCCCeeEEEeCCccccccccceeEeecc-CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-
Q 010037          352 ---IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-  426 (519)
Q Consensus       352 ---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-  426 (519)
                         ......+.......+..-+++.+....+...++.+. -..++-+.|-.....+-.=.+..|...|..+++.+..+. 
T Consensus       135 gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widl  214 (262)
T COG3823         135 GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDL  214 (262)
T ss_pred             eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEc
Confidence               011223445556666677777777665555555442 234445555432233333344456666777777766552 


Q ss_pred             ------------CCCcEEEEEEeeCCCCEEEEEe
Q 010037          427 ------------HNNYVTSVAFNPVDDNYFISGS  448 (519)
Q Consensus       427 ------------h~~~V~~v~fsp~d~~~l~sgs  448 (519)
                                  +....+.|++.|..++++++|-
T Consensus       215 S~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         215 SGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             cCCchhcCccccccccccceeecCcCCeEEEecC
Confidence                        4456789999996667888873

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.63  E-value=21  Score=35.15  Aligned_cols=117  Identities=17%  Similarity=0.272  Sum_probs=63.2

Q ss_pred             cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc-CCCcE
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQV  463 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~-~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~-~~~~~  463 (519)
                      -.+.+..+.-+++| +++++..-....-||-........ ..-...|..+.|.| ++.+.+.+ ..|.|+.=+. .....
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCccc
Confidence            34678888889999 555555444455777554333222 23578899999999 77766654 8899988872 22222


Q ss_pred             Ee-----eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          464 VD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       464 ~~-----~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      ..     .......+..++|.+++...++|+ .|.+ +.....++-++.
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~  267 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQK  267 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceE
Confidence            11     112233478999999987777655 5543 556666666554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=85.15  E-value=13  Score=37.33  Aligned_cols=101  Identities=12%  Similarity=0.145  Sum_probs=56.8

Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE---EEEec-----CCCcEEEEEEeeC---CCCEEEEEeCC--------
Q 010037          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRVFS-----HNNYVTSVAFNPV---DDNYFISGSID--------  450 (519)
Q Consensus       390 ~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~---~~~~~-----h~~~V~~v~fsp~---d~~~l~sgs~D--------  450 (519)
                      ..+.|+|.|+|.|+.+...|.|++++ ..+..   +..+.     .......++++|.   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999667778899999999 44443   22221     4456899999992   23333333321        


Q ss_pred             CeEEEEEcCCC-------cEE-e-ec---cCCCceEEEEEeeCCCEEEEEecC
Q 010037          451 GKVRIWEVRRC-------QVV-D-YT---DIREIVSAVCYCPDGKGGIVGTMT  491 (519)
Q Consensus       451 g~V~iwd~~~~-------~~~-~-~~---~~~~~V~~v~~spdg~~l~sgs~d  491 (519)
                      ..|.-|.....       +.+ . ..   ........|+|.|||.+.++.+..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence            13443444332       111 1 11   223445779999999776665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.02  E-value=3.3  Score=44.66  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=47.3

Q ss_pred             CCCCeEEeeecCCeEEEeeCCccc---cccccc-ccc----ceee-----------cCCCCEEEEEEcc----CCCEEEE
Q 010037          245 PGDHELTLGQRMRRVRVHPVKKQS---RELSSL-YTG----QEFL-----------AHEGSILTMKFSL----DGQYLAS  301 (519)
Q Consensus       245 p~g~~lasgs~dg~I~vw~~~~~~---~~~~~~-~~~----~~l~-----------~H~~~I~~l~fsp----dg~~LaS  301 (519)
                      ++...++.+..||.+.........   ...... ...    +.+.           .-...+..++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            566788888888888777766411   100000 000    0010           1123455666666    6789999


Q ss_pred             EeCCCcEEEEecccCeeeceeecc
Q 010037          302 GGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       302 gs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      .+.|+++|+||+.+++++......
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEETT
T ss_pred             EeCCCeEEEEECCCCeEEEEeccc
Confidence            999999999999999997777655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.60  E-value=17  Score=37.44  Aligned_cols=88  Identities=19%  Similarity=0.262  Sum_probs=58.6

Q ss_pred             EEEEcCCC-eEEEEeCCCcEEE---EECCC-----CeEEEE----ecCC--CcEEEEEEeeC----------CCCEEEEE
Q 010037          393 DLSWSKNG-FLLSSSADKTVRL---WQVGI-----DRCLRV----FSHN--NYVTSVAFNPV----------DDNYFISG  447 (519)
Q Consensus       393 ~l~~sp~~-~L~sgs~Dg~V~l---Wdl~~-----~~~~~~----~~h~--~~V~~v~fsp~----------d~~~l~sg  447 (519)
                      .++.+|++ .|+.+..++.|.+   |+...     +.....    +.+.  ..|+++.+-|.          +...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            45677888 7777777776665   64311     111111    1233  58898888774          45789999


Q ss_pred             eCCCeEEEEEcCCCcEEeeccCCCceEEEEEee
Q 010037          448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP  480 (519)
Q Consensus       448 s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp  480 (519)
                      ..+|.|++|......++...-|..+|..+....
T Consensus        86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence            999999999985544445566778888877654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.44  E-value=6.8  Score=35.15  Aligned_cols=30  Identities=23%  Similarity=0.432  Sum_probs=25.6

Q ss_pred             CCeeEEEEcCCC-------eEEEEeCCCcEEEEECCC
Q 010037          389 SEVLDLSWSKNG-------FLLSSSADKTVRLWQVGI  418 (519)
Q Consensus       389 ~~V~~l~~sp~~-------~L~sgs~Dg~V~lWdl~~  418 (519)
                      ..|..++|||.|       .|++.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            489999999954       789999999999998663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=83.99  E-value=0.1  Score=53.13  Aligned_cols=100  Identities=13%  Similarity=0.283  Sum_probs=72.8

Q ss_pred             CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEE-ec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRV-FS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       388 ~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~-~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      .+...+|+|..++  .++.+-..+.+.+||+.+....+. +.  +....  +.|++ ....++.|...|.+.|++-.+.+
T Consensus        74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR  150 (615)
T KOG2247|consen   74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSR  150 (615)
T ss_pred             chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchh
Confidence            3456678888877  667777889999999986532211 11  33222  78898 78888889899999999999877


Q ss_pred             EEeecc-CCCceEEEEEeeCCCEEEEEecC
Q 010037          463 VVDYTD-IREIVSAVCYCPDGKGGIVGTMT  491 (519)
Q Consensus       463 ~~~~~~-~~~~V~~v~~spdg~~l~sgs~d  491 (519)
                      .+-..+ |...+++++|.+.+.. +.++.|
T Consensus       151 ~iiv~Gkh~RRgtq~av~lEd~v-il~dcd  179 (615)
T KOG2247|consen  151 RIIVMGKHQRRGTQIAVTLEDYV-ILCDCD  179 (615)
T ss_pred             hhhhhcccccceeEEEeccccee-eecCcH
Confidence            665444 8889999999998764 344433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.98  E-value=16  Score=37.43  Aligned_cols=68  Identities=22%  Similarity=0.241  Sum_probs=44.7

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      |.+.++.+...|.+.=|-++.......   .. --....++|.+++||+|.+.||.--.|++|.+.+....+
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVp---iS-fdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVP---IS-FDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCC---ce-eeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence            444444444556666676654442221   11 012346799999999999999999999999999985443

>PRK10115 protease 2; Provisional

Probab=83.80  E-value=78  Score=35.28  Aligned_cols=68  Identities=9%  Similarity=0.031  Sum_probs=42.0

Q ss_pred             ceeecCCCCeEEee-----ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC------CcE
Q 010037          240 SATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------GTV  308 (519)
Q Consensus       240 ~~~~sp~g~~lasg-----s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D------g~I  308 (519)
                      ...++|++++|+.+     +..-+|++.++..+.....      .+.+ ..  ..++|.+|++.|+-...+      ..|
T Consensus       131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------LLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------cccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence            35789999988764     4445688888864431111      1111 11  458999999866655432      357


Q ss_pred             EEEecccC
Q 010037          309 RVWKVIEH  316 (519)
Q Consensus       309 ~iWd~~~~  316 (519)
                      ..+++.++
T Consensus       202 ~~h~lgt~  209 (686)
T PRK10115        202 WRHTIGTP  209 (686)
T ss_pred             EEEECCCC
Confidence            77777766

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.62  E-value=51  Score=36.16  Aligned_cols=51  Identities=20%  Similarity=0.270  Sum_probs=37.7

Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEee
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP  438 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp  438 (519)
                      ...+..+..+|+. +|+.=...|.|.+-++...+++..+.  ....-..++|.-
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg  269 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG  269 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence            4567888999988 88888999999999888888777775  222233555654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.30  E-value=38  Score=35.40  Aligned_cols=96  Identities=14%  Similarity=0.225  Sum_probs=62.7

Q ss_pred             EEeCCCcEEEEECCC-CeEEEEecCCCcEEEEEEee---CCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE
Q 010037          404 SSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNP---VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY  478 (519)
Q Consensus       404 sgs~Dg~V~lWdl~~-~~~~~~~~h~~~V~~v~fsp---~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~  478 (519)
                      .|-.+..|.-.|.+- +..+.......+++.-.|+.   ....|+|+++..|-|++||.-..+.- .+.+....|..+..
T Consensus       532 vGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idv  611 (776)
T COG5167         532 VGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDV  611 (776)
T ss_pred             EeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEe
Confidence            344444454445442 33444444444454444443   14569999999999999996544333 46677888999999


Q ss_pred             eeCCCEEEEEecCCeEEEEECC
Q 010037          479 CPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       479 spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +.+|+++++.+ ...+.+-|++
T Consensus       612 ta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         612 TANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             ecCCcEEEEee-cceEEEEecc
Confidence            99999877665 4577777875

>PHA03098 kelch-like protein; Provisional

Probab=81.04  E-value=34  Score=36.74  Aligned_cols=106  Identities=15%  Similarity=0.187  Sum_probs=56.4

Q ss_pred             eEEEEeCC-----CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CeEEEEEcCCCcEEeec
Q 010037          401 FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRRCQVVDYT  467 (519)
Q Consensus       401 ~L~sgs~D-----g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D------g~V~iwd~~~~~~~~~~  467 (519)
                      .++.|+.+     ..+..||..+++....-.  +...-.+++..  ++.+++.|+.+      ..+..||+.+.+-....
T Consensus       345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~  422 (534)
T PHA03098        345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS  422 (534)
T ss_pred             EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence            55555544     357778887776543322  22111222222  56777777732      35888998775433221


Q ss_pred             cCCCce-EEEEEeeCCCEEEEEecC--------CeEEEEECCCCeeeecc
Q 010037          468 DIREIV-SAVCYCPDGKGGIVGTMT--------GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       468 ~~~~~V-~~v~~spdg~~l~sgs~d--------g~v~iwdl~~~~l~~~~  508 (519)
                      ....+. ...+...+++.++.|+.+        ..+.+||..+++-..+.
T Consensus       423 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~  472 (534)
T PHA03098        423 PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS  472 (534)
T ss_pred             CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence            111111 112233466777777653        23889999887655443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=80.88  E-value=15  Score=39.89  Aligned_cols=117  Identities=15%  Similarity=0.161  Sum_probs=70.8

Q ss_pred             eEEEEcCCCeEEEEeCC------CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCe-----EEEEEcCC
Q 010037          392 LDLSWSKNGFLLSSSAD------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-----VRIWEVRR  460 (519)
Q Consensus       392 ~~l~~sp~~~L~sgs~D------g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~-----V~iwd~~~  460 (519)
                      .+++...+...++|+.|      .++..||..+++....-.-...-..+.....++.+.++|+.||.     |-.||..+
T Consensus       326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~  405 (571)
T KOG4441|consen  326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT  405 (571)
T ss_pred             ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence            34444444477888888      45788999888866543322222222333337889999999874     77788776


Q ss_pred             CcEEeeccCCCceEEEE-EeeCCCEEEEEecCC------eEEEEECCCCeeeecc
Q 010037          461 CQVVDYTDIREIVSAVC-YCPDGKGGIVGTMTG------NCRFYDIKGMQIFDLS  508 (519)
Q Consensus       461 ~~~~~~~~~~~~V~~v~-~spdg~~l~sgs~dg------~v~iwdl~~~~l~~~~  508 (519)
                      .+--............+ -.-+|+..++|+.++      ++..||..+++-..+.
T Consensus       406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~  460 (571)
T KOG4441|consen  406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA  460 (571)
T ss_pred             CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence            54332222222222222 233788888888654      5789999887765544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.64  E-value=3.4  Score=44.55  Aligned_cols=72  Identities=10%  Similarity=0.213  Sum_probs=50.1

Q ss_pred             cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       426 ~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .....+++|+-+| .++-++.+..||.|++|+....+.........+-..+.|...|  |++++.|..+.-|.-.
T Consensus        12 k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   12 KEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKED   83 (1636)
T ss_pred             cccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeecc
Confidence            3456788999999 9999999999999999998665543333333344456665554  5666667666666543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.41  E-value=8.9  Score=34.38  Aligned_cols=30  Identities=27%  Similarity=0.310  Sum_probs=25.8

Q ss_pred             ceEEEEEeeCC------CEEEEEecCCeEEEEECCC
Q 010037          472 IVSAVCYCPDG------KGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       472 ~V~~v~~spdg------~~l~sgs~dg~v~iwdl~~  501 (519)
                      .|.+++|+|-|      -+|++.+.+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78999999955      3688999999999998774

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	519
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-12
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-12
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-12
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-12
2h9l_A	329	Wdr5delta23 Length = 329		3e-12
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-12
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-12
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-12
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-12
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-12
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-11
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-08
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-08
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-08
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-07
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		7e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		3e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-05
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		8e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		9e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-04
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		3e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-04
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		3e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		4e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 83  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 141
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 501 GMQIF 505
             Q  
Sbjct: 202 SGQCL 206

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 85  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 143
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 501 GMQIF 505
             Q  
Sbjct: 204 SGQCL 208

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 501 GMQ 503
             Q
Sbjct: 186 SGQ 188

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 501 GMQ 503
             Q
Sbjct: 186 SGQ 188

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 119
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 501 GMQ 503
             Q
Sbjct: 180 SGQ 182

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 66  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 124
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 501 GMQ 503
             Q
Sbjct: 185 SGQ 187

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 119
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 501 GMQ 503
             Q
Sbjct: 180 SGQ 182

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 501 GMQ 503
             Q
Sbjct: 186 SGQ 188

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 62  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 120
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 501 GMQ 503
             Q
Sbjct: 181 SGQ 183

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 78  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 136
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 501 GMQ 503
             Q
Sbjct: 197 SGQ 199

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 60  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 118
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 501 GMQ 503
             Q
Sbjct: 179 SGQ 181

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 57  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 115
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 501 GMQ 503
             Q
Sbjct: 176 SGQ 178

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 386 GHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443
           GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   N 
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 124
Query: 444 FISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM 502
            +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D    
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 503 Q 503
           Q
Sbjct: 185 Q 185

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 GMQ 503
             Q
Sbjct: 183 SGQ 185

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 GMQ 503
             Q
Sbjct: 183 SGQ 185

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+    +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 GMQ 503
             Q
Sbjct: 183 SGQ 185

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+    +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 GMQ 503
             Q
Sbjct: 183 SGQ 185

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 118/263 (44%), Gaps = 36/263 (13%)
Query: 264 VKKQSRELSSLYTG----------QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
           +KKQ+ +   LY             + L H   +  +KFS DG+YLA+G  + T +V++V
Sbjct: 34  LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRV 92
Query: 314 IEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370
            +     RL      + DP  L  + +  S L           ++               
Sbjct: 93  SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI---------RSVCFSPDGKFLATGAE 143
Query: 371 PKVFRLLE----KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF 425
            ++ R+ +    K +   QGH  ++  L +  +G  L+S S D+TVR+W +   +C    
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--------REIVSAVC 477
           S  + VT+VA +P D  Y  +GS+D  VR+W+     +V+  D         ++ V +V 
Sbjct: 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263
Query: 478 YCPDGKGGIVGTMTGNCRFYDIK 500
           +  DG+  + G++  + + ++++
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQ 286

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
           NH   + P  +D +      +L+K ++   ++  P + R ++  LH+   H+S V  + +
Sbjct: 13  NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 72
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN-------------------YVTSVAFN 437
           S +G  L++  +KT ++++V     +   S ++                   Y+ SV F+
Sbjct: 73  SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI-VSAVCYCPDGKGGIVGTMTGNCRF 496
           P D  +  +G+ D  +RIW++   ++V      E  + ++ Y P G   + G+     R 
Sbjct: 133 P-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 497 YDIKGMQ 503
           +D++  Q
Sbjct: 192 WDLRTGQ 198

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 26/208 (12%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           Q    H  S+  + FS DGQ +AS  +D TV++W              + +   L     
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--------------NRNGQHLQTLTG 342
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
           H S +  +    +     +++  +SD   V L  +  +LL+       GHSS V  +++S
Sbjct: 343 HSSSVWGVAFSPDG----QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVRGVAFS 394
Query: 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
            +G  + S+S DKTV+LW         +  H++ V  VAF+P DD    S S D  V++W
Sbjct: 395 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLW 453
Query: 457 EVRRCQVVD-YTDIREIVSAVCYCPDGK 483
             R  Q++   T     V  V + PDG+
Sbjct: 454 N-RNGQLLQTLTGHSSSVRGVAFSPDGQ 480

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
           K  +  + HSS V  +++S +G  + S+S DKTV+LW         +  H++ V  VAF+
Sbjct: 7   KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 66
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK 483
           P D     S S D  V++W  R  Q++   T     V  V + PDG+
Sbjct: 67  P-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 111

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 21/229 (9%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H   I+++K++ DG ++ S   +    +W VI    +  F++++T  S +    NH S  
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE-NH-SGD 205
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPK----VFRLLEK-PLHEFQGHSSEVLDLSWS 397
             + VD E +D  K          V+  PK    V+++ EK P  +  GH   +  L ++
Sbjct: 206 GSLGVDVEWVDDDK---------FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 398 -KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
             N  LLS+S D T+R+W  G       F  H+  + S ++  V D+  IS S+DG VR+
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW--VGDDKVISCSMDGSVRL 314
Query: 456 WEVRRCQVVDYTDIREI-VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           W +++  ++  + +  + + A     DG+   V  M G    YD+K + 
Sbjct: 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329
           E+ + Y  + F  H   +  ++ + DG  +AS   D TVRVW V   E            
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 330 SCLYF----TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385
            C+ +    + + +S+    +  K        L  S D T  +        L        
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MTLV 335
Query: 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443
           GH + V  + +   G F+LS + DKT+R+W     RC++   +H ++VTS+ F+     Y
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-Y 394
Query: 444 FISGSIDGKVRIWEVR 459
            ++GS+D  V++WE R
Sbjct: 395 VVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP 438
           +    GH   V  +S   NG  ++S+S DKT+++W+V    C++ F+ H  +V  V  N 
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 439 VDDNYFISGSIDGKVRIWEV--RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN--- 493
            D     S S D  VR+W V  + C+  +  + R +V  + + P+     +   TG+   
Sbjct: 245 -DGTLIASCSNDQTVRVWVVATKECK-AELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 494 ---------CRFYDIKGMQIFDLSTTAYLFALLGH 519
                          K ++++D+ST   L  L+GH
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           ++   F+ +GQ +A GG D    ++ +      DG ++  +     +       Q +P  
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYASSCQYVP-- 167
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWS--KNGFLL 403
            D+E    T+ +  S D TCV+      + +     EF  GH+++VL LS +       +
Sbjct: 168 -DQE----TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222
Query: 404 SSSADKTVRLWQVGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-- 459
           S S D TVRLW + I  R +R +  H   + SV F P D   F +GS DG  R++++R  
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTG 281
Query: 460 -RCQVVDYTDIRE-----IVSAVCYCPDGKGGIVGTMTGNCRFYD 498
            + QV +    R      IV++V +   G+    G   G+C  +D
Sbjct: 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 402 LLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
           L++ S D+T  LW V   + + +F       H   V S++ N ++ N FISGS D  VR+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 456 WEVRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG---MQIFD 506
           W++R     V  Y      +++V + PDG+    G+  G CR +D++    +Q+++
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 53/251 (21%)
Query: 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
           G   L+  D ++  G R   +++    K + E   + TG     H GS+L +++  D + 
Sbjct: 135 GVYCLQYDDQKIVSGLRDNTIKIW--DKNTLECKRILTG-----HTGSVLCLQY--DERV 185
Query: 299 LASGGEDGTVRVWKVIEHERLD--------------------------GFDVQD----TD 328
           + +G  D TVRVW V   E L+                             V D    TD
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
            +     + H + +  +D D + I     +  S D T  V        +        GH 
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYI-----VSASGDRTIKVWNTSTCEFVRT----LNGHK 296
Query: 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISG 447
             +  L + ++  ++S S+D T+RLW +    CLRV   H   V  + F   D+   +SG
Sbjct: 297 RGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSG 352
Query: 448 SIDGKVRIWEV 458
           + DGK+++W++
Sbjct: 353 AYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354
           D Q + SG  D T+++W     E             C      H   ++ +  D+  I  
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLE-------------CKRILTGHTGSVLCLQYDERVI-- 186
Query: 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLW 414
              +  SSD T  V       +L   +H    H   VL L ++ NG +++ S D+++ +W
Sbjct: 187 ---ITGSSDSTVRVWDVNTGEMLNTLIH----HCEAVLHLRFN-NGMMVTCSKDRSIAVW 238
Query: 415 QVG--IDRCLR--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464
            +    D  LR  +  H   V  V F   DD Y +S S D  +++W    C+ V
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFV 289

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339
              H  ++  M   L  + + SG  D T+RVW +                 CL+  + H+
Sbjct: 195 LYGHTSTVRCMH--LHEKRVVSGSRDATLRVWDI-------------ETGQCLHVLMGHV 239
Query: 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399
           + +  +  D  ++     +  + D    V  P+     E  LH  QGH++ V  L +   
Sbjct: 240 AAVRCVQYDGRRV-----VSGAYDFMVKVWDPET----ETCLHTLQGHTNRVYSLQFD-G 289
Query: 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
             ++S S D ++R+W V    C+   + +  +TS     + DN  +SG+ D  V+IW+++
Sbjct: 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILVSGNADSTVKIWDIK 347
Query: 460 RCQVV 464
             Q +
Sbjct: 348 TGQCL 352

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 91/240 (37%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 56  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 115
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 152
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 153 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 211
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G     G+    CR +D++  Q
Sbjct: 212 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 270

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 91/240 (37%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G     G+    CR +D++  Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 91/240 (37%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G     G+    CR +D++  Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 91/240 (37%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G     G+    CR +D++  Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 91/240 (37%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G     G+    CR +D++  Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 93/246 (37%), Gaps = 74/246 (30%)
Query: 267 QSRELSSLYTGQ---EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323
            S  L +L  GQ   +FL H   +L++ FS D + + SGG D  +RVW V          
Sbjct: 89  HSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV---------- 138
Query: 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD-LTCVVLPPKVFRLLEKPLH 382
                                    K +   T S    +D ++CV   P     L+ P+ 
Sbjct: 139 -------------------------KGECMHTLSRGAHTDWVSCVRFSPS----LDAPV- 168
Query: 383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVDD 441
                              ++S   D  V++W +   R +  +  H NYVTSV  +P D 
Sbjct: 169 -------------------IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DG 208
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG 501
           +   S   DG  R+W++ + + +        ++ +C+ P+       T          KG
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATE---------KG 259
Query: 502 MQIFDL 507
           ++IFDL
Sbjct: 260 IRIFDL 265

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
           KK  + LS L        H  ++    FS DGQ +AS G D T++V+K    E+L     
Sbjct: 600 KKTIKNLSRLVVR----PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 655
Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
            + +  C  F+ +  S +     DK    K K    ++                K +H +
Sbjct: 656 HEDEVLCCAFSSDD-SYIATCSADK----KVKIWDSATG---------------KLVHTY 695
Query: 385 QGHSSEV--LDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVD 440
             HS +V     +   N  LL++ S D  ++LW +    C   +F H N V    F+P D
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 754
Query: 441 DNYFISGSIDGKVRIWEVR 459
           D    S S DG +R+W+VR
Sbjct: 755 DELLASCSADGTLRLWDVR 773

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
           KK  + LS L        H  ++    FS DGQ +AS G D T++V+K    E+L     
Sbjct: 607 KKTIKNLSRLVVR----PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 662
Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
            + +  C  F+ +  S +     DK    K K    ++                K +H +
Sbjct: 663 HEDEVLCCAFSSDD-SYIATCSADK----KVKIWDSATG---------------KLVHTY 702
Query: 385 QGHSSEV--LDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVD 440
             HS +V     +   N  LL++ S D  ++LW +    C   +F H N V    F+P D
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 761
Query: 441 DNYFISGSIDGKVRIWEVR 459
           D    S S DG +R+W+VR
Sbjct: 762 DELLASCSADGTLRLWDVR 780

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 105/263 (39%), Gaps = 40/263 (15%)
Query: 255 RMRRVRVHPVKKQSRELSS--LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
           ++  V +H V ++   L    + T +    H   +L M +  D + + S  +DG V VW 
Sbjct: 33  KLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92
Query: 313 VIEHERLDGFDVQDT-DPSCLYFT---------INHLSQLIPIDVDKEKIDKTKSLRKSS 362
                +     +  T   +C Y           +++   + P+  DK +    K  +KS 
Sbjct: 93  SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK--KKSV 150
Query: 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRC 421
            +                      H++ +   S++ +   +L++S D T  LW V   + 
Sbjct: 151 AM----------------------HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188
Query: 422 LRVF-SHNNYVTSVAFNPVDD-NYFISGSIDGKVRIWEVRRCQVVDYTDIREI-VSAVCY 478
           L+ F  H   V  +   P +  N F+SG  D K  +W++R  Q V   +  E  V++V Y
Sbjct: 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248
Query: 479 CPDGKGGIVGTMTGNCRFYDIKG 501
            P G     G+    CR YD++ 
Sbjct: 249 YPSGDAFASGSDDATCRLYDLRA 271

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 48/220 (21%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
           +YTGQ FL       ++ +  + + L  GG+D  +          +  F     DP  LY
Sbjct: 55  VYTGQGFLN------SVCYDSEKELLLFGGKDTXIN--------GVPLFATSGEDP--LY 98
Query: 334 FTINHLSQLIPID-----VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
             I H   +  +      V     DKT  + K   L                ++  Q H+
Sbjct: 99  TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSL----------------VYNLQAHN 142
Query: 389 SEVLD---LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNY 443
           + V D   +S+S+N FL ++SADKT++LWQ   D+ ++ FS  HN+ V  +A   VDD +
Sbjct: 143 ASVWDAKVVSFSENKFL-TASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAV--VDDGH 197
Query: 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG 482
           FIS S DG +++ +     V+  Y      V  +   P+G
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG 237

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           + ++K+S DG +L+ G  +G V ++ V    +L           CL +  + LS      
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSG---- 192
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS 406
                  ++ ++                R+    +   QGHSSEV  L+W  +G  L+S 
Sbjct: 193 ------SRSGAIHHHD-----------VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG 235
Query: 407 A-DKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRC 461
             D  V++W     I +  +  +HN  V +VA+ P   N   +  G++D ++  W     
Sbjct: 236 GNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Query: 462 QVVDYTDIREIVSAVCYCPDGK 483
             V+  D    V+++ + P  K
Sbjct: 295 ARVNTVDAGSQVTSLIWSPHSK 316

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI---EHERLDGFDVQD 326
           +L++  + + F+ H   +L++ FSLD + + S   D T+++W  +   ++   +G +   
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQ 385
              SC+ F+ N L   I              +  S D T      KV+ L    L     
Sbjct: 518 DWVSCVRFSPNTLQPTI--------------VSASWDKTV-----KVWNLSNCKLRSTLA 558
Query: 386 GHSSEVLDLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444
           GH+  V  ++ S +G L +S   D  V LW +   + L     N+ + ++ F+P  + Y+
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP--NRYW 616
Query: 445 ISGSIDGKVRIWEVRRCQVVD 465
           +  + +  ++IW++    +V+
Sbjct: 617 LCAATEHGIKIWDLESKSIVE 637

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 93  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 138
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 194
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 252
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 253 GIKVFSLDPQYLVD--DLR 269

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 51  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 111 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 156

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 384 FQGHSSEVLDLSWSK-NGFLLSSSADKTVRLWQ-VGIDR-CLRVFSHNNYVTSVAFNPVD 440
           F GH+ +VL +++S  N  ++S S DKT++LW  +G+ +  ++  SH+ +V+ V F+P  
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 441 DNYFI-SGSIDGKVRIWEVRRCQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
            N  I S   D  V++W +  C++  ++      ++ V   PDG     G   G    +D
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Query: 499 I-KGMQIFDL 507
           + +G  ++ L
Sbjct: 244 LNEGKHLYTL 253

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 384 FQGHSSEVLDLSWSK-NGFLLSSSADKTVRLWQ-VGIDR-CLRVFSHNNYVTSVAFNPVD 440
           F GH+ +VL +++S  N  ++S S DKT++LW  +G+ +  ++  SH+ +V+ V F+P  
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160
Query: 441 DNYFI-SGSIDGKVRIWEVRRCQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
            N  I S   D  V++W +  C++  ++      ++ V   PDG     G   G    +D
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Query: 499 I-KGMQIFDL 507
           + +G  ++ L
Sbjct: 221 LNEGKHLYTL 230

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 35/241 (14%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           I ++ +  +G YLA G     V++W V + +RL            L +    LS      
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS------ 214
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
                     S  +S  +          R+ E  +    GHS EV  L W+ +G  L S 
Sbjct: 215 ----------SGSRSGHIHH-----HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 259
Query: 406 SADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
             D  V +W           L+ F+ H   V +VA+ P   N   +  G+ D  +RIW V
Sbjct: 260 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLG 518
                +   D    V ++ + P  K  I G        +    + I+   T A +  L G
Sbjct: 320 CSGACLSAVDAHSQVCSILWSPHYKELISG------HGFAQNQLVIWKYPTMAKVAELKG 373
Query: 519 H 519
           H
Sbjct: 374 H 374

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 89/241 (36%), Gaps = 35/241 (14%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           I ++ +  +G YLA G     V++W V + +RL       T  S    +++  S ++   
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 205
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
                I                      R+ E  +    GHS EV  L W+ +G  L S 
Sbjct: 206 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248
Query: 406 SADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
             D  V +W           L+ F+ H   V +VA+ P   N   +  G+ D  +RIW V
Sbjct: 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLG 518
                +   D    V ++ + P  K  I G        +    + I+   T A +  L G
Sbjct: 309 CSGACLSAVDAHSQVCSILWSPHYKELISG------HGFAQNQLVIWKYPTMAKVAELKG 362
Query: 519 H 519
           H
Sbjct: 363 H 363

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 117 K-KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 42/233 (18%)
Query: 288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV 347
            + K + D   L SG  D TV +WK+ E E+   F +    P       NH    + +  
Sbjct: 31  FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGI----PHKALTGHNHFVSDLAL-- 84
Query: 348 DKEKIDKTKSLRKSSDLTCVVLPP---KVFRLLE----KPLHEFQGHSSEVLDLSWSK-N 399
                         S   C  +     K  RL +         F GH SEV  +++S  N
Sbjct: 85  --------------SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN 130
Query: 400 GFLLSSSADKTVRLWQVGIDRC----LRVFSHNNYVTSVAFNPVDDN---------YFIS 446
             +LS+ A++ ++LW + +  C        +H+++V+ V ++P+  +         YF S
Sbjct: 131 RQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 447 GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499
              DG++++W         +      V+ +   P+GK    G        +DI
Sbjct: 190 VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAF 436
           +K L +  GH   V  L ++  G L+S S D+TVR+W +    C  VF  HN+ V  +  
Sbjct: 152 KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 437 NPVDD-NYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN 493
               +  Y ++GS D  + +W++ +   V D+ +  +    V + P+     VG + G+
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGH 269

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAF 436
           +K L +  GH   V  L ++  G L+S S D+TVR+W +    C  VF  HN+ V  +  
Sbjct: 152 KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 437 NPVDD-NYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN 493
               +  Y ++GS D  + +W++ +   V D+ +  +    V + P+     VG + G+
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGH 269

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 385 QGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443
           Q H+  VLD+ WS +G  + ++S DKT ++W +  ++ +++  H+  V ++ +     NY
Sbjct: 83  QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-PNY 141
Query: 444 --FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
              ++GS D  ++ W+ R    +    + E     CYC D
Sbjct: 142 SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE----RCYCAD 177

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 90/241 (37%), Gaps = 35/241 (14%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           I ++ +  +G YLA G     V++W V + +RL       T  S    +++  S ++   
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 125
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
                I                      R+ E  +    GHS EV  L W+ +G  L S 
Sbjct: 126 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168
Query: 406 SADKTVRLWQV----GIDRCLRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
             D  V +W      G    L+ F+ H   V +VA+ P   N   +  G+ D  +RIW V
Sbjct: 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLSTTAYLFALLG 518
                +   D    V ++ + P  K  I G        +    + I+   T A +  L G
Sbjct: 229 CSGACLSAVDAHSQVCSILWSPHYKELISG------HGFAQNQLVIWKYPTMAKVAELKG 282
Query: 519 H 519
           H
Sbjct: 283 H 283

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK-TVRLWQV-----GIDRCLRVFSHNNYV 431
           EKP+   Q   S+  DL WS N  +++ + D  ++ L+        I+   R  +H++ V
Sbjct: 58  EKPIASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116
Query: 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
            +V FN   DN   SG  +G++ IW++ +C
Sbjct: 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 390 EVLDLSWSKNGFLL---------------SSSADKTVRLWQVGIDRCLRVFSHNNY-VTS 433
           E LDL WS  G  L               SSS D  +RLW +   + ++          +
Sbjct: 68  ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTG 492
           +AF+P D  Y  +G+  GKV I+ V   +     D R + + ++ Y PDGK    G + G
Sbjct: 128 LAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 493 NCRFYDIKGMQIFDLSTTAYLFALLGH 519
                    + IFD++T   L  L GH
Sbjct: 187 I--------INIFDIATGKLLHTLEGH 205

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 57/190 (30%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
            HE ++ ++ F   GQ LAS  +D TVR+W+        G     +DPS  +  I  LS 
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS--WKCICTLSG 249
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG 400
                                                        HS  + D++W +  G
Sbjct: 250 F--------------------------------------------HSRTIYDIAWCQLTG 265
Query: 401 FLLSSSADKTVRLWQ--VGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSID 450
            L ++  D  +R++Q     D     FS        H+  V  VA+NP +     S S D
Sbjct: 266 ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325
Query: 451 GKVRIWEVRR 460
           G+V  W+ +R
Sbjct: 326 GEVAFWKYQR 335

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
           +P    +GH  E   LSW+ N  G+LLS+S D T+ LW +         ID       H 
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             V  VA++ + ++ F S + D K+ IW+ R 
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 267

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
           +P    +GH  E   LSW+ N  G+LLS+S D T+ LW +         ID       H 
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             V  VA++ + ++ F S + D K+ IW+ R 
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 265

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
           +P    +GH  E   LSW+ N  G+LLS+S D T+ LW +         ID       H 
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             V  VA++ + ++ F S + D K+ IW+ R 
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
           H   VT VA NP  D +  + S+D  V+IW++R    +   +     R  V+A C+ PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 483 KGGIVGTMTGNCRFY 497
              +        R Y
Sbjct: 309 ARLLTTDQKSEIRVY 323

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
           H   VT VA NP  D +  + S+D  V+IW++R    +   +     R  V+A C+ PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 483 KGGIVGTMTGNCRFY 497
              +        R Y
Sbjct: 309 ARLLTTDQKSEIRVY 323

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS--KNGFLLSSSADKTVRLWQV---GIDRC 421
           +VLP      ++K +    GH++ VLD++W    +  + S S D TV +W++   G+   
Sbjct: 60  LVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119
Query: 422 LR-----VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           LR     +  H   V  VA++P   N  +S   D  + +W+V
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
           H   VT VA NP  D +  + S+D  V+IW++R    +   +     R  V+A C+ PDG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 28/199 (14%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC---------LY 333
           H+  + T+    DG    SGG+D +V+VW + +   L  ++   ++ +C         ++
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDL-TCVVLPPK---VFRL-----------LE 378
            +     +++  D  K K         S  + T V   P+    F             ++
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
Query: 379 KP--LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
            P        HS  +  L++S +   FL S S D TV +         R  SH ++VT V
Sbjct: 258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGV 317
Query: 435 AFNPVDDNYFISGSIDGKV 453
           A++P+D + F +   D KV
Sbjct: 318 AWSPLDHSKFTTVGWDHKV 336

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 386 GHSSEVLDLSWS--KNGFLLSSSADKTVRLWQV---GIDRCLR-----VFSHNNYVTSVA 435
           GH++ VLD++W    +  + S S D TV +W++   G+   LR     +  H   V  VA
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 436 FNPVDDNYFISGSIDGKVRIWEV 458
           ++P   N  +S   D  + +W+V
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTS 433
            +GH  E   LSW+ N  G LLS+S D TV LW +         +D       H+  V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVR 459
           VA++ + ++ F S + D K+ IW+ R
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTR 260

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTS 433
            +GH  E   LSW+ N  G LLS+S D TV LW +         +D       H+  V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVR 459
           VA++ + ++ F S + D K+ IW+ R
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTR 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	519
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.98
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.98
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.98
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.93
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.92
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.9
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.89
3jro_A	753	Fusion protein of protein transport protein SEC13	99.89
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.84
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.78
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.77
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.77
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.74
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.73
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.73
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.72
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.72
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.7
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.69
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.68
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.67
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.67
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.67
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.66
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.63
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.62
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.62
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.61
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.6
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.59
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.57
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.56
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.53
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.52
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.51
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.51
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.48
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.47
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.46
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.46
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.43
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.43
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.43
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.4
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.36
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.36
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.36
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.36
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.33
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.33
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.32
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.3
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.27
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.26
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.26
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.26
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.24
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.23
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.22
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.2
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.2
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.2
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.17
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.17
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.13
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.1
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.07
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.06
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.05
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.04
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.03
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.03
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.03
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.99
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.97
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.94
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.9
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.9
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.88
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.87
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.85
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.81
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.8
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.78
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.69
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.63
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.57
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.54
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.53
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.49
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.38
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.37
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.32
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.27
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.27
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.27
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.27
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.24
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.24
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.23
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.23
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.19
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.18
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.15
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.1
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.05
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.04
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.03
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.02
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.01
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.01
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.95
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.91
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.83
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.77
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.74
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.73
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.69
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.67
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.6
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.59
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.56
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.55
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.52
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.48
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.43
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.4
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.37
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.37
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.26
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.17
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.17
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.15
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.99
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.98
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.97
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.96
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.92
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.89
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.87
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.85
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.58
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.52
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.49
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.46
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.43
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.38
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.31
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.26
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.03
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.78
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.6
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.57
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.54
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.44
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.36
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.05
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.97
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.9
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.67
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.43
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.26
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.24
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.21
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.2
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.15
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.76
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.51
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	93.47
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.43
3ott_A	758	Two-component system sensor histidine kinase; beta	92.56
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.51
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.95
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.63
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.23
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	91.08
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.03
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	91.02
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.51
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.7
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.59
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.11
3ott_A	758	Two-component system sensor histidine kinase; beta	89.02
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.57
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	88.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	88.37
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	87.89
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	87.7
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	86.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.77
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	86.74
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	85.55
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.28
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	81.06
2rr3_B	47	OSBP, oxysterol-binding protein 1; lipid transport	80.13
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	80.01

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.2e-34  Score=281.33  Aligned_cols=253  Identities=19%  Similarity=0.241  Sum_probs=215.6

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      ..+.+|.+.+.+++|+|++++|++|+.||+|+||++....       ....+..|..+|.+++|+|++++|++|+.|++|
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            3567888999999999999999999999999999987543       234578899999999999999999999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      ++||+.+++.+..+..+...+.++.+.+...                ..+.++.++.+.+|+....   ......+.+|.
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~sgs~D~~v~lWd~~~~---~~~~~~~~~h~  140 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP----------------YVLSGSDDLTVKLWNWENN---WALEQTFEGHE  140 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSS----------------EEEEEETTSCEEEEEGGGT---TEEEEEECCCC
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCC----------------EEEEECCCCeEEEEECCCC---cchhhhhcccC
Confidence            9999999999988888888888887766542                2245566777888875432   12356788999


Q ss_pred             CCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCcE
Q 010037          389 SEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQV  463 (519)
Q Consensus       389 ~~V~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~~~~  463 (519)
                      ..|.+++|+|. + .|++|+.|++|++||+++..+...+.  |...+..+.|+|. ++.+|++|+.|++|+|||++++++
T Consensus       141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~  220 (304)
T 2ynn_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC  220 (304)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence            99999999994 5 99999999999999998877665553  6788999999873 567999999999999999999987


Q ss_pred             E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       464 ~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      + .+.+|...|++++|+|++++|++|+.||.|++||+.++++...
T Consensus       221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~  265 (304)
T 2ynn_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT  265 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence            7 5788999999999999999999999999999999998876543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.5e-34  Score=294.00  Aligned_cols=250  Identities=20%  Similarity=0.301  Sum_probs=218.8

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      ..+.+|...+.+++|+|++.+|++|+.||+|+||++....       ....+.+|.+.|++++|+|++++|++|+.|++|
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i  174 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTI  174 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            3467788899999999999999999999999999987544       234688999999999999999999999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      +|||+.+++++..+..+...+.++.|.++..                ..+.++.++.+.+|+...    +..+..+.+|.
T Consensus       175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~----------------~l~s~s~D~~i~~wd~~~----~~~~~~~~~h~  234 (410)
T 1vyh_C          175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGD----------------HIVSASRDKTIKMWEVQT----GYCVKTFTGHR  234 (410)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSS----------------EEEEEETTSEEEEEETTT----CCEEEEEECCS
T ss_pred             EEEeCCCCceeEEEcCCCCCEEEEEEeCCCC----------------EEEEEeCCCeEEEEECCC----CcEEEEEeCCC
Confidence            9999999998888888877777777766432                124556677888888764    34577889999


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCC-------------------CCEEEEE
Q 010037          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD-------------------DNYFISG  447 (519)
Q Consensus       389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d-------------------~~~l~sg  447 (519)
                      ..|.+++|+|++ +|++|+.|++|++||+.++++...+. |...|++++|+|..                   +.+|++|
T Consensus       235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            999999999999 99999999999999999999988885 99999999999931                   6799999


Q ss_pred             eCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          448 SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       448 s~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +.|++|++||+++++++ .+.+|...|++++|+|+|++|++|+.||.|++||+.++++.
T Consensus       315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~  373 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM  373 (410)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC
T ss_pred             eCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE
Confidence            99999999999999877 57789999999999999999999999999999999887654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.6e-34  Score=287.06  Aligned_cols=248  Identities=14%  Similarity=0.181  Sum_probs=201.5

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      +...+.+++|+|++ .|++|+.||+|+|||+........   ....+.+|.+.|++|+|+|+|++|++|+.||+|++||+
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~---~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIV---SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEE---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeE---eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            44567889999985 678999999999999986543221   11235689999999999999999999999999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe--eccCCCe
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHSSEV  391 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V  391 (519)
                      .+++++..+..+...+.++.|.+.....+               +.++.++.+.+|+....    ++...+  ..|...+
T Consensus       157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l---------------~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~  217 (344)
T 4gqb_B          157 AQQVVLSSYRAHAAQVTCVAASPHKDSVF---------------LSCSEDNRILLWDTRCP----KPASQIGCSAPGYLP  217 (344)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECSSCTTEE---------------EEEETTSCEEEEETTSS----SCEEECC----CCCE
T ss_pred             CCCcEEEEEcCcCCceEEEEecCCCCCce---------------eeecccccccccccccc----ceeeeeecceeeccc
Confidence            99999999988888888888876654433               23455667778876543    333433  3466789


Q ss_pred             eEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc
Q 010037          392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD  468 (519)
Q Consensus       392 ~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~  468 (519)
                      .+++|+|++  +|++|+.|++|+|||+++++++..+. |...|++|+|+|...++|++|+.|++|+|||+++++++...+
T Consensus       218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~  297 (344)
T 4gqb_B          218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA  297 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECC
T ss_pred             eeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcC
Confidence            999999965  88999999999999999999998886 999999999999334789999999999999999999999999


Q ss_pred             CCCceEEEEEeeCCC-EEEEEecCCeEEEEECCCCee
Q 010037          469 IREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       469 ~~~~V~~v~~spdg~-~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      |.+.|++++|+|+++ +|++|+.||+|++|++.+..+
T Consensus       298 H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          298 HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            999999999999986 567899999999999987654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=281.84  Aligned_cols=251  Identities=16%  Similarity=0.274  Sum_probs=212.9

Q ss_pred             CeeeEeecccceeecCC----CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037          230 AMARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~----g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D  305 (519)
                      ....|.+.|.+++|+|+    +.+|++|+.|++|+||++......     ....+.+|...|.+++|++++.+|++++.|
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-----~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-----LQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-----EEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-----eeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            34567888999999885    668999999999999998754322     223578999999999999999999999999


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      ++|++||+.+++.+..+..+...+.++.|.++...                .+.++.++.+.+|+...    .+....+.
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~----------------l~~g~~dg~v~i~~~~~----~~~~~~~~  161 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY----------------LATGTHVGKVNIFGVES----GKKEYSLD  161 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSE----------------EEEECTTSEEEEEETTT----CSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCE----------------EEEEcCCCcEEEEEcCC----CceeEEec
Confidence            99999999999998888877777777777665421                23345566677776654    34466778


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~  463 (519)
                      .|...|.+++|+|++ +|++|+.|+.|++||+++++++..+. |...|++++|+| ++++|++|+.|++|+|||+++++.
T Consensus       162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~  240 (321)
T 3ow8_A          162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANL  240 (321)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCE
T ss_pred             CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcce
Confidence            899999999999999 99999999999999999999999886 899999999999 999999999999999999999887


Q ss_pred             E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       464 ~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      + .+..|...|++++|+|+|++|++++.||.|++||+.+++++.
T Consensus       241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  284 (321)
T 3ow8_A          241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH  284 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence            7 577899999999999999999999999999999999887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.8e-33  Score=281.11  Aligned_cols=249  Identities=18%  Similarity=0.323  Sum_probs=207.6

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~  307 (519)
                      ...+.+|...+.+++|+|++++|++|+.||+|+||+......       ...+..|...|.+++|+|++++|++|+.|+.
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  120 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------EEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------ceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence            345677888899999999999999999999999999875432       3457789999999999999999999999999


Q ss_pred             EEEEecccCe----eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          308 VRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       308 I~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      |++|++.+..    ....+..+...+.++.+.+..                 ..+.++.++.+.+|+...    .+.+..
T Consensus       121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------------~l~s~s~d~~i~~wd~~~----~~~~~~  179 (340)
T 1got_B          121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-----------------QIVTSSGDTTCALWDIET----GQQTTT  179 (340)
T ss_dssp             EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-----------------EEEEEETTSCEEEEETTT----TEEEEE
T ss_pred             EEEEECccCCCcceeEEEecCCCccEEEEEECCCC-----------------cEEEEECCCcEEEEECCC----CcEEEE
Confidence            9999997653    333444555555555554332                 124456677888887754    345678


Q ss_pred             eeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      +.+|...|.+++|+|++ +|++|+.|++|++||++++.++..+. |...|++++|+| ++++|++|+.||+|++||++++
T Consensus       180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCC
Confidence            88999999999999999 99999999999999999999998886 999999999999 9999999999999999999998


Q ss_pred             cEEeeccC---CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          462 QVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       462 ~~~~~~~~---~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +.+....+   ...|++++|+|+|++|++|+.||.|++||+.+++..
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~  305 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence            87654333   347999999999999999999999999999876653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.5e-34  Score=292.24  Aligned_cols=242  Identities=18%  Similarity=0.316  Sum_probs=207.0

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +.+|.+.+.+++|+|++.+|++|+.|++|+||++....       ....+.+|...|.+++|+|++++|++|+.|++|++
T Consensus       146 l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~  218 (410)
T 1vyh_C          146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM  218 (410)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            45577788889999999999999999999999987433       23456789999999999999999999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ||+.++.++..+..+...+.++.+.++..                ..+.++.++.+.+|+...    ......+.+|...
T Consensus       219 wd~~~~~~~~~~~~h~~~v~~~~~~~~g~----------------~l~s~s~D~~v~vwd~~~----~~~~~~~~~h~~~  278 (410)
T 1vyh_C          219 WEVQTGYCVKTFTGHREWVRMVRPNQDGT----------------LIASCSNDQTVRVWVVAT----KECKAELREHRHV  278 (410)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTT----CCEEEEECCCSSC
T ss_pred             EECCCCcEEEEEeCCCccEEEEEECCCCC----------------EEEEEcCCCeEEEEECCC----CceeeEecCCCce
Confidence            99999998888877766666655544321                223456677788887654    3456778899999


Q ss_pred             eeEEEEcCC--------------------C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe
Q 010037          391 VLDLSWSKN--------------------G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS  448 (519)
Q Consensus       391 V~~l~~sp~--------------------~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs  448 (519)
                      |.+++|+|+                    + +|++|+.|++|++||++++.++..+. |...|++++|+| ++.+|++|+
T Consensus       279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s  357 (410)
T 1vyh_C          279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCA  357 (410)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEE
T ss_pred             EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEe
Confidence            999999995                    5 89999999999999999999998886 999999999999 999999999


Q ss_pred             CCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          449 IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       449 ~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .||+|+|||+.+++++ .+..|...|++++|+|++.+|++|+.||.|+||+++
T Consensus       358 ~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999988766 577899999999999999999999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.3e-33  Score=279.91  Aligned_cols=254  Identities=19%  Similarity=0.252  Sum_probs=212.5

Q ss_pred             cccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccc---------------------------------
Q 010037          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS---------------------------------  272 (519)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~---------------------------------  272 (519)
                      +....+.+|.+.+.+++|+|++.+|++|+.||+|+||+.........                                 
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            34456778888899999999999999999999999999754332110                                 


Q ss_pred             --------cccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEE
Q 010037          273 --------SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP  344 (519)
Q Consensus       273 --------~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (519)
                              .......+.+|.+.|.++.|+|++.+|++|+.|++|++||+.+++.+..+..+...+.++.+.+.....   
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~---  211 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN---  211 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC---
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC---
Confidence                    011234567899999999999999999999999999999999999988888877777777766543322   


Q ss_pred             eeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE
Q 010037          345 IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR  423 (519)
Q Consensus       345 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~  423 (519)
                                 ..+.++.++.+.+|+...    .+++..+.+|...|.+++|+|++ +|++++.|++|++||+++++.+.
T Consensus       212 -----------~l~sgs~Dg~v~~wd~~~----~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~  276 (354)
T 2pbi_B          212 -----------TFVSGGCDKKAMVWDMRS----GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA  276 (354)
T ss_dssp             -----------EEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             -----------EEEEEeCCCeEEEEECCC----CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence                       223456677888888765    34577889999999999999999 99999999999999999998888


Q ss_pred             Eec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          424 VFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       424 ~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      .+.   +...+++++|+| ++.+|++|+.|++|+|||+.+++.+ .+..|...|++++|+|||++|++|+.||.|+||+
T Consensus       277 ~~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          277 IYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECCTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEcCCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            775   345789999999 9999999999999999999988766 5778999999999999999999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.7e-33  Score=281.73  Aligned_cols=205  Identities=15%  Similarity=0.228  Sum_probs=173.1

Q ss_pred             eecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeec
Q 010037          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (519)
Q Consensus       280 l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (519)
                      ..+|.+.|++|+|+|++++|++|+.||+|++||+.+++.+..+..+...+.++.+.+.....++               .
T Consensus       135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~---------------s  199 (357)
T 4g56_B          135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL---------------S  199 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE---------------E
T ss_pred             cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee---------------e
Confidence            3479999999999999999999999999999999999998888888888878777665543332               3


Q ss_pred             cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEE
Q 010037          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF  436 (519)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~f  436 (519)
                      ++.++.+.+|+.......  ....+..|...+.+++|+|++  +|++|+.|+.|++||+++++++..+. |...|++++|
T Consensus       200 ~~~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~  277 (357)
T 4g56_B          200 CGEDGRILLWDTRKPKPA--TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY  277 (357)
T ss_dssp             EETTSCEEECCTTSSSCB--CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred             eccCCceEEEECCCCcee--eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence            445667788876543221  112234577889999999986  88999999999999999999888886 8999999999


Q ss_pred             eeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEee-CCCEEEEEecCCeEEEEECCC
Q 010037          437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       437 sp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~sgs~dg~v~iwdl~~  501 (519)
                      +|.+.++|++|+.|++|+|||+++++++....|...|++++|+| |+++|++|+.||.|++|++.+
T Consensus       278 sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          278 SYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             cCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            99445789999999999999999999998889999999999999 899999999999999999965

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=274.48  Aligned_cols=242  Identities=21%  Similarity=0.278  Sum_probs=209.4

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +.+|...+.+++++|++.++++|+.|++|++||+.....       ...+..|...+.+++|+|++++|++|+.||.|++
T Consensus        76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i  148 (321)
T 3ow8_A           76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ-------IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI  148 (321)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred             eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE-------EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence            456677788899999999999999999999999875442       2356788999999999999999999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      |++.+++....+..+...+.++.+.++..                ..+.++.++.+.+|+...    .+.+..+.+|...
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~----------------~lasg~~dg~i~iwd~~~----~~~~~~~~~h~~~  208 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYSPDGK----------------YLASGAIDGIINIFDIAT----GKLLHTLEGHAMP  208 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTT----TEEEEEECCCSSC
T ss_pred             EEcCCCceeEEecCCCceEEEEEECCCCC----------------EEEEEcCCCeEEEEECCC----CcEEEEEcccCCc
Confidence            99999988777776666666666655432                123455667777887654    3457788999999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eec
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYT  467 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~  467 (519)
                      |.+++|+|++ +|++++.|++|+|||+++++++..+. |...|++++|+| ++.+|++|+.|++|+|||+++++++ .+.
T Consensus       209 v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  287 (321)
T 3ow8_A          209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFF  287 (321)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence            9999999999 99999999999999999999988886 999999999999 9999999999999999999999887 577


Q ss_pred             cCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       468 ~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .|...|++++|+|+|++|++++.||.|+|||+.
T Consensus       288 ~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            899999999999999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.1e-32  Score=274.83  Aligned_cols=240  Identities=18%  Similarity=0.278  Sum_probs=204.8

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      +...+.+++|+|++.+|++|+.|+.|++|++......   ......+.+|.+.|.++.|++++. |++++.|++|++||+
T Consensus        96 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~  171 (340)
T 1got_B           96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN---VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI  171 (340)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS---CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEET
T ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc---ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEEC
Confidence            4455677899999999999999999999998754321   223346789999999999998875 889999999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .+++....+..+...+.++.+.++..                ..+.++.++.+.+|+...    ...+..+.+|...|.+
T Consensus       172 ~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~sg~~d~~v~~wd~~~----~~~~~~~~~h~~~v~~  231 (340)
T 1got_B          172 ETGQQTTTFTGHTGDVMSLSLAPDTR----------------LFVSGACDASAKLWDVRE----GMCRQTFTGHESDINA  231 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTT----CSEEEEECCCSSCEEE
T ss_pred             CCCcEEEEEcCCCCceEEEEECCCCC----------------EEEEEeCCCcEEEEECCC----CeeEEEEcCCcCCEEE
Confidence            99998888887777777777665432                223456677788887654    3457788999999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCC---CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eecc
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD  468 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~---~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~  468 (519)
                      ++|+|++ +|++|+.|++|++||+++++.+..+.|.   ..|++++|+| ++.+|++|+.|+.|++||+.+++.+ .+.+
T Consensus       232 v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~  310 (340)
T 1got_B          232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeec
Confidence            9999999 9999999999999999999998888754   4799999999 9999999999999999999988776 5788


Q ss_pred             CCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       469 ~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      |...|++++|+|+|++|++|+.||.|+|||
T Consensus       311 h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=276.96  Aligned_cols=263  Identities=16%  Similarity=0.153  Sum_probs=201.0

Q ss_pred             ccccccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccc----cccccccccceeecCCCCEEEEEEccCCCE
Q 010037          223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS----RELSSLYTGQEFLAHEGSILTMKFSLDGQY  298 (519)
Q Consensus       223 ~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~----~~~~~~~~~~~l~~H~~~I~~l~fspdg~~  298 (519)
                      .|..+.....++...+.+++|+|||.+|++++ |+++++|+.....    ..............|...|.+++|+|++ +
T Consensus        18 ~w~~~~~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~   95 (344)
T 4gqb_B           18 EWNLPPNAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G   95 (344)
T ss_dssp             -----CCSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred             ccCCCCCCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence            34444444455666678899999999998877 7778888632110    0000111122334577899999999985 6


Q ss_pred             EEEEeCCCcEEEEecccCeeeceee----ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccc
Q 010037          299 LASGGEDGTVRVWKVIEHERLDGFD----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (519)
Q Consensus       299 LaSgs~Dg~I~iWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (519)
                      |++|+.||+|+|||+.+++....+.    .|...+.++.|.++..                ..+.++.++.+.+|+... 
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~----------------~l~sgs~d~~i~iwd~~~-  158 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT----------------QAVSGSKDICIKVWDLAQ-  158 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTT-
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC----------------EEEEEeCCCeEEEEECCC-
Confidence            8899999999999999887654432    4555666666655432                234566777888887764 


Q ss_pred             cccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeC
Q 010037          375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~  449 (519)
                         ++.+..+.+|...|.+++|+|++  +|++++.|++|+|||+++++++..+.   +...+++++|+|.++++|++|+.
T Consensus       159 ---~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~  235 (344)
T 4gqb_B          159 ---QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE  235 (344)
T ss_dssp             ---TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred             ---CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence               45678899999999999999987  78999999999999999999888874   66789999999977889999999


Q ss_pred             CCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCCeeeec
Q 010037          450 DGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       450 Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      ||+|+|||+++++++ .+..|...|++++|+|+| ++|++|+.||.|+|||+.+++++.+
T Consensus       236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~  295 (344)
T 4gqb_B          236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS  295 (344)
T ss_dssp             TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence            999999999998876 578899999999999998 5799999999999999999887654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.9e-32  Score=272.60  Aligned_cols=290  Identities=16%  Similarity=0.213  Sum_probs=224.0

Q ss_pred             hhhhhhcccccCC----CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeeccccee
Q 010037          167 EIEIESRLQESGS----SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSAT  242 (519)
Q Consensus       167 ~~~~~~~l~~v~~----~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  242 (519)
                      +|...  |..+..    ++.|.....++++.     +|.+...+.               ....+...+.+|...+.+++
T Consensus        15 gH~~~--V~~l~~~~~~~~~l~s~s~D~~v~-----~W~~~~~~~---------------~~~~~~~~~~~h~~~v~~~~   72 (319)
T 3frx_A           15 GHNGW--VTSLATSAGQPNLLLSASRDKTLI-----SWKLTGDDQ---------------KFGVPVRSFKGHSHIVQDCT   72 (319)
T ss_dssp             CCSSC--EEEEEECSSCTTEEEEEETTSEEE-----EEEEEEETT---------------EEEEEEEEEECCSSCEEEEE
T ss_pred             cccce--EEEEEccCCCccEEEEecCCccEE-----EecCCCCCc---------------cccccceEEeCCcccEEEEE
Confidence            45544  555543    35677777777777     776543211               01122344567778888899


Q ss_pred             ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeecee
Q 010037          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF  322 (519)
Q Consensus       243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~  322 (519)
                      |+|++.+|++|+.|++|+|||+....       ..+.+.+|...|.+++|+|++.+|++|+.|++|++||+. +.++..+
T Consensus        73 ~s~dg~~l~s~s~D~~v~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~  144 (319)
T 3frx_A           73 LTADGAYALSASWDKTLRLWDVATGE-------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL  144 (319)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCCCC-------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence            99999999999999999999987543       234678999999999999999999999999999999996 4455555


Q ss_pred             eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-e
Q 010037          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F  401 (519)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~  401 (519)
                      ..+...+..+.+.+....          .......+.++.++.+.+|+....    +....+.+|...|.+++|+|++ +
T Consensus       145 ~~h~~~v~~~~~~~~~~~----------~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~sp~g~~  210 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKA----------DDDSVTIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTL  210 (319)
T ss_dssp             CCCSSCEEEEEECCC----------------CCEEEEEETTSCEEEEETTTT----EEEEEECCCCSCEEEEEECTTSSE
T ss_pred             eccCCcEEEEEEccCCCC----------CCCccEEEEEeCCCEEEEEECCcc----hhheeecCCCCcEEEEEEcCCCCE
Confidence            555555555555543211          001223456677888888887653    3456788999999999999999 9


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee---------ccCCCc
Q 010037          402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY---------TDIREI  472 (519)
Q Consensus       402 L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~---------~~~~~~  472 (519)
                      |++++.|++|+|||+.+++++..+.+...|.+++|+| ++.+|++++.+ .+++|++.....+..         ..+...
T Consensus       211 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (319)
T 3frx_A          211 IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPH  288 (319)
T ss_dssp             EEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECS-SSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcC-CCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcc
Confidence            9999999999999999999999999888999999999 89999988754 599999998766532         234567


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      +.+++|+|||++|++|+.||.|+|||+.++
T Consensus       289 v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          289 AVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             eeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            999999999999999999999999998654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.5e-32  Score=270.92  Aligned_cols=266  Identities=15%  Similarity=0.214  Sum_probs=203.2

Q ss_pred             CeeeEeecccceeecCC-CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          230 AMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      ++.+|.+.|.+++|+|+ +++||+|+.||+|+||++......  .....+.+.+|...|.+++|+|++++|++|+.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            47789999999999998 579999999999999998765432  122345688999999999999999999999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCC--------CeEEeeccCCcee---------------------eeeeec
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLS--------QLIPIDVDKEKID---------------------KTKSLR  359 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---------------------~~~~~~  359 (519)
                      ++|+.....................+.+....        .+..+........                     ....+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            99999888776666555544444433332211        1111111110000                     011123


Q ss_pred             cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEee
Q 010037          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP  438 (519)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp  438 (519)
                      ++.+..+.+|+...    .+.+..+.+|...|++++|+|++ +|++|+.|++|++||+++.+++..+.+...|++++|+|
T Consensus       191 ~~~d~~i~i~d~~~----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  266 (340)
T 4aow_A          191 CGWDKLVKVWNLAN----CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP  266 (340)
T ss_dssp             EETTSCEEEEETTT----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             EcCCCEEEEEECCC----CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC
Confidence            34455555665543    34567788999999999999999 99999999999999999999999999889999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCcEEe----------eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          439 VDDNYFISGSIDGKVRIWEVRRCQVVD----------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       439 ~d~~~l~sgs~Dg~V~iwd~~~~~~~~----------~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                       ++. +++++.|+.|+|||++++..+.          ...|...|++++|+|||++|++|+.||.|+|||+++|+
T Consensus       267 -~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          267 -NRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             -SSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             -CCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence             665 5556679999999999876552          23578899999999999999999999999999998874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.2e-32  Score=267.27  Aligned_cols=248  Identities=17%  Similarity=0.253  Sum_probs=195.6

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I  308 (519)
                      +.+|.+.+.+++|+|+|++||+|+.|++|+||++.....     .....+.+|.++|++++|++  ++++||||+.||+|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            445777888999999999999999999999999864321     23356889999999999986  48999999999999


Q ss_pred             EEEecccCe--eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       309 ~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      +|||+.+++  .+..+..+...+.++.|.+......              .+.++.++.+.+|+......  .....+.+
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~--------------l~s~s~d~~v~~wd~~~~~~--~~~~~~~~  143 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPM--------------LLVASSDGKVSVVEFKENGT--TSPIIIDA  143 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSE--------------EEEEETTSEEEEEEBCSSSC--BCCEEEEC
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcE--------------EEEEECCCcEEEEEecCCCc--eeeeeeec
Confidence            999998774  3344455566666777766532221              23445566677776543211  11356789


Q ss_pred             cCCCeeEEEEcCC-------------C-eEEEEeCCCcEEEEECCCCe----EEEEec-CCCcEEEEEEeeCC---CCEE
Q 010037          387 HSSEVLDLSWSKN-------------G-FLLSSSADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVD---DNYF  444 (519)
Q Consensus       387 h~~~V~~l~~sp~-------------~-~L~sgs~Dg~V~lWdl~~~~----~~~~~~-h~~~V~~v~fsp~d---~~~l  444 (519)
                      |...|.+++|+|+             + +|++|+.|++|+|||++++.    ++..+. |...|++|+|+| +   +.+|
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp-~~~~~~~l  222 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYM  222 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-CCCCceEE
Confidence            9999999999996             4 89999999999999998765    555564 999999999999 6   4899


Q ss_pred             EEEeCCCeEEEEEcCCCc---E-E--eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          445 ISGSIDGKVRIWEVRRCQ---V-V--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       445 ~sgs~Dg~V~iwd~~~~~---~-~--~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      ++|+.|++|+|||+++..   . .  ....|...|.+++|+|+|++|++++.||.|+||+..
T Consensus       223 as~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            999999999999998743   1 1  224678899999999999999999999999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.8e-32  Score=269.17  Aligned_cols=255  Identities=19%  Similarity=0.261  Sum_probs=214.1

Q ss_pred             ccCCeeeEeecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037          227 KLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D  305 (519)
                      ..+.+.+|.+.+.+++|+|++ .+|++|+.|++|++|++.......  ......+.+|...|.+++|+|++++|++|+.|
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            344677888999999999965 899999999999999986433211  12335688999999999999999999999999


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      ++|+|||+.+++.+..+..+...+.++.+.+...                ..+.++.++.+.+|+..     ...+..+.
T Consensus        87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~s~s~D~~i~vwd~~-----~~~~~~~~  145 (319)
T 3frx_A           87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS----------------MIISGSRDKTIKVWTIK-----GQCLATLL  145 (319)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC----------------EEEEEETTSCEEEEETT-----SCEEEEEC
T ss_pred             CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC----------------EEEEEeCCCeEEEEECC-----CCeEEEEe
Confidence            9999999999999888888877777777655431                23455667778787654     45677889


Q ss_pred             ccCCCeeEEEEcCC------C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 010037          386 GHSSEVLDLSWSKN------G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (519)
Q Consensus       386 ~h~~~V~~l~~sp~------~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd  457 (519)
                      +|...|.+++|+|.      + .|++++.|++|++||+++.+....+. |...|++++|+| ++.+|++|+.||+|+|||
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd  224 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWN  224 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEE
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEE
Confidence            99999999999984      3 79999999999999999999888775 999999999999 999999999999999999


Q ss_pred             cCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       458 ~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +.+++.+....+...|.+++|+|++.+|++++.+ .+++|++..+.+..
T Consensus       225 ~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~  272 (319)
T 3frx_A          225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVD  272 (319)
T ss_dssp             TTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEE
T ss_pred             CCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeee
Confidence            9999988666667889999999999999888754 59999998776543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.3e-32  Score=272.69  Aligned_cols=269  Identities=17%  Similarity=0.214  Sum_probs=208.1

Q ss_pred             ccCCeeeEeecccceee-----cC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE
Q 010037          227 KLGAMARIIDRHGSATL-----KP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA  300 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~-----sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La  300 (519)
                      ....+.+|.+.|.+++|     +| ++.+|++|+.|++|+||++...............+.+|...|.+++|+|++.+|+
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            34457788888999998     66 9999999999999999998754322111223356789999999999999999999


Q ss_pred             EEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCC--------eEEeeccCCceee------------------
Q 010037          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ--------LIPIDVDKEKIDK------------------  354 (519)
Q Consensus       301 Sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~------------------  354 (519)
                      +|+.|++|++||+.+++.+..+..+...+.++.|.++....        +..+.........                  
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP  172 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence            99999999999999999988888888888888887764322        1122211100000                  


Q ss_pred             ------------eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEEC-CCCe
Q 010037          355 ------------TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDR  420 (519)
Q Consensus       355 ------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl-~~~~  420 (519)
                                  ...+.++.++.+.+|+..     ......+.+|...|.+++|+|++ +|++|+.|++|++||+ ....
T Consensus       173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFASVGWDGRLKVWNTN-----FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             CCCSCSCCCSSCCEEEEEETTSEEEEEETT-----TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred             ccccccccCCCCCEEEEEcCCCEEEEEcCC-----CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence                        122344556666666632     34566788999999999999999 9999999999999999 4555


Q ss_pred             EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE---eec-----------cCCCceEEEEEeeCCCEEE
Q 010037          421 CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYT-----------DIREIVSAVCYCPDGKGGI  486 (519)
Q Consensus       421 ~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~---~~~-----------~~~~~V~~v~~spdg~~l~  486 (519)
                      +...+.+...|++++|+| ++.++++| .|+.|++||+.+++..   .+.           .|...|++++|+|+|++|+
T Consensus       248 ~~~~~~~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  325 (343)
T 2xzm_R          248 PQREFDAGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF  325 (343)
T ss_dssp             CSEEEECSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred             cceeecCCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence            666666777899999999 88887765 5788999999876533   121           5777899999999999999


Q ss_pred             EEecCCeEEEEECCCC
Q 010037          487 VGTMTGNCRFYDIKGM  502 (519)
Q Consensus       487 sgs~dg~v~iwdl~~~  502 (519)
                      +|+.||.|++|++.++
T Consensus       326 sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          326 AGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EEETTSEEEEEEEEEE
T ss_pred             EecCCceEEEEEEEcc
Confidence            9999999999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.6e-33  Score=282.03  Aligned_cols=280  Identities=18%  Similarity=0.258  Sum_probs=219.8

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeecccceeecCCCCeEEeeecCCeE
Q 010037          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV  259 (519)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I  259 (519)
                      ++.|..+..++++.     +|.+...+.                    ...+..|...+.+++|+|++++|++|+.|+.|
T Consensus        78 ~~~l~s~s~D~~v~-----iWd~~~~~~--------------------~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v  132 (380)
T 3iz6_a           78 KNWIVSASQDGRLI-----VWNALTSQK--------------------THAIKLHCPWVMECAFAPNGQSVACGGLDSAC  132 (380)
T ss_dssp             SSCEEEEETTSEEE-----EEETTTTEE--------------------EEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred             CCEEEEEeCCCeEE-----EEECCCCcc--------------------ceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence            66777777777777     886543211                    11233455667789999999999999999999


Q ss_pred             EEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEecccCeeeceee-----ccCCCCceEE
Q 010037          260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFD-----VQDTDPSCLY  333 (519)
Q Consensus       260 ~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~iWd~~~~~~~~~~~-----~~~~~~~~~~  333 (519)
                      +||++...............+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+.     .+...+.++.
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence            999997544332333444567899999999999996 4579999999999999999998776552     2222233333


Q ss_pred             EeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEE
Q 010037          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVR  412 (519)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~  412 (519)
                      +.+..               ....+.++.++.+.+|+.+.   ...++..+.+|...|.+++|+|++ +|++|+.|++|+
T Consensus       213 ~~~~~---------------~~~l~sgs~D~~v~~wd~~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~  274 (380)
T 3iz6_a          213 INSLN---------------ANMFISGSCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR  274 (380)
T ss_dssp             ECSSS---------------CCEEEEEETTSCEEEEETTT---TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEE
T ss_pred             eecCC---------------CCEEEEEECCCeEEEEECCC---CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEE
Confidence            32211               12334567788888887653   235677889999999999999999 999999999999


Q ss_pred             EEECCCCeEEEEecC--------CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-e----ccCCCceEEEEEe
Q 010037          413 LWQVGIDRCLRVFSH--------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y----TDIREIVSAVCYC  479 (519)
Q Consensus       413 lWdl~~~~~~~~~~h--------~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~----~~~~~~V~~v~~s  479 (519)
                      |||+++++++..+..        ...|++++|+| ++.+|++|+.||.|++||+.+++.+. +    ..|...|++++|+
T Consensus       275 lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s  353 (380)
T 3iz6_a          275 LFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS  353 (380)
T ss_dssp             EEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC
T ss_pred             EEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC
Confidence            999999999988752        23489999999 99999999999999999999887763 3    5788999999999


Q ss_pred             eCCCEEEEEecCCeEEEEECCCCe
Q 010037          480 PDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       480 pdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      |+|++|++|+.||.|+||++.+.+
T Consensus       354 ~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          354 SDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCCEEEEeeCCCCEEEEecCCCc
Confidence            999999999999999999998754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.7e-31  Score=259.33  Aligned_cols=250  Identities=20%  Similarity=0.337  Sum_probs=208.1

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      ..+.+|...+.+++|+|++++|++|+.||.|+||+......       .+.+.+|...|.+++|+|++++|++|+.||.|
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   89 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-------EKTISGHKLGISDVAWSSDSNLLVSASDDKTL   89 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------EEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-------chhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence            34667888889999999999999999999999999875432       24578899999999999999999999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      ++||+.+++.+..+..+...+.++.+.+...                ..+.++.++.+.+|+...    .+.+..+..|.
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~  149 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN----------------LIVSGSFDESVRIWDVKT----GKCLKTLPAHS  149 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSS----------------EEEEEETTSCEEEEETTT----CCEEEEECCCS
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCC----------------EEEEEeCCCcEEEEECCC----CEEEEEecCCC
Confidence            9999999998888887777777776665432                223455667788887654    34567788999


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      ..|.+++|+|++ +|++++.|+.|++||+++++++..+.  +...+.+++|+| ++++|++++.|+.|++||+++++.+.
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~  228 (312)
T 4ery_A          150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLK  228 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            999999999999 99999999999999999999888774  677899999999 99999999999999999999998774


Q ss_pred             -eccCCCce---EEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          466 -YTDIREIV---SAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       466 -~~~~~~~V---~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                       +..|...+   ......+++.+|++|+.||.|++||+.+++++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  273 (312)
T 4ery_A          229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ  273 (312)
T ss_dssp             EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred             EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence             55554432   223334678999999999999999999887654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-30  Score=281.90  Aligned_cols=244  Identities=16%  Similarity=0.230  Sum_probs=199.1

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      ....+++|+|+|++||+++ ++.|+||++....       ....+.+|...|++++|+|+|++||+|+.||+|+|||+.+
T Consensus        19 g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~-------~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~   90 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ   90 (611)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred             CceeEEeeCCCCCEEEeCC-CCEEEEecCCCcc-------cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCC
Confidence            4445689999999999987 5799999986432       3346789999999999999999999999999999999975


Q ss_pred             Ce--eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          316 HE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       316 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      ++  ....+..+...+.++.|.++.... +......           ...+.+.+|+.      +.....+.+|...|.+
T Consensus        91 ~~~~~~~~~~~~~~~v~~v~fs~dg~~l-~~~~~~~-----------~~~~~v~~wd~------~~~~~~l~gh~~~v~~  152 (611)
T 1nr0_A           91 TTHILKTTIPVFSGPVKDISWDSESKRI-AAVGEGR-----------ERFGHVFLFDT------GTSNGNLTGQARAMNS  152 (611)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEE-EEEECCS-----------SCSEEEEETTT------CCBCBCCCCCSSCEEE
T ss_pred             CcceeeEeecccCCceEEEEECCCCCEE-EEEECCC-----------CceeEEEEeeC------CCCcceecCCCCCceE
Confidence            43  334556666677777777654321 1111110           11245666663      2345678899999999


Q ss_pred             EEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec---
Q 010037          394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---  467 (519)
Q Consensus       394 l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~---  467 (519)
                      ++|+|++  .|++|+.|++|++||..+++++..+. |...|++++|+| ++++|++|+.|++|+|||+.+++.+...   
T Consensus       153 v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~  231 (611)
T 1nr0_A          153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDD  231 (611)
T ss_dssp             EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred             EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence            9999998  69999999999999999999988886 999999999999 9999999999999999999998877432   


Q ss_pred             -----cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          468 -----DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       468 -----~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                           .|...|++++|+|+|++|++++.|+.|++||+.++++..
T Consensus       232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~  275 (611)
T 1nr0_A          232 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK  275 (611)
T ss_dssp             TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence                 689999999999999999999999999999999887543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-31  Score=267.03  Aligned_cols=279  Identities=15%  Similarity=0.146  Sum_probs=207.4

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeecccceeecCCCCeEEeeecCCeE
Q 010037          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV  259 (519)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I  259 (519)
                      |+.|+....++++.     +|.+.....                 ........+|...+.+++|+|++++|++|+.|+.|
T Consensus        28 g~~las~~~D~~i~-----iw~~~~~~~-----------------~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A           28 GTLLASCGGDRRIR-----IWGTEGDSW-----------------ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             SSCEEEEETTSCEE-----EEEEETTEE-----------------EEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCEEEEEcCCCeEE-----EEEcCCCcc-----------------eeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            66777777777766     775432210                 00011123466778889999999999999999999


Q ss_pred             EEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe---eeceeeccCCCCceEEEee
Q 010037          260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE---RLDGFDVQDTDPSCLYFTI  336 (519)
Q Consensus       260 ~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~---~~~~~~~~~~~~~~~~~~~  336 (519)
                      +||+......     .....+.+|.+.|.+++|+|++++|++|+.|++|++||+.++.   ++..+..+...+.++.|.+
T Consensus        86 ~iw~~~~~~~-----~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           86 CIWKKNQDDF-----ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             EEEEECCC-E-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred             EEEEccCCCe-----EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence            9999874432     2234678999999999999999999999999999999998764   3344555555566666655


Q ss_pred             cCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEE
Q 010037          337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ  415 (519)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWd  415 (519)
                      +..                ..+.++.++.+.+|+.....  ......+.+|...|.+++|+|++ +|++++.|++|+|||
T Consensus       161 ~~~----------------~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          161 SQE----------------LLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             SSS----------------CEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCC----------------EEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            432                12234455566666543211  12346788999999999999999 999999999999999


Q ss_pred             CCCC---------------eEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc--------EE--eecc
Q 010037          416 VGID---------------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--------VV--DYTD  468 (519)
Q Consensus       416 l~~~---------------~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~--------~~--~~~~  468 (519)
                      +...               +++..+.  |...|++++|+| ++.+|++++.|+.|++|+.....        ..  ....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  301 (345)
T 3fm0_A          223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA  301 (345)
T ss_dssp             EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTS
T ss_pred             cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc
Confidence            6321               3444443  889999999999 89999999999999999987642        11  2357


Q ss_pred             CCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCCee
Q 010037          469 IREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       469 ~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      |...|++++|+|++ .+|++|+.||.|++|++.+++.
T Consensus       302 h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            88999999999998 4999999999999999987764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.7e-31  Score=286.09  Aligned_cols=249  Identities=18%  Similarity=0.245  Sum_probs=206.9

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC----C
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----G  306 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D----g  306 (519)
                      +.+|.+.+.+++|+|+|++||+|+.||+|+|||+......     ....+.+|.++|.+++|+|+|++|++++.+    +
T Consensus        55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----eeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            4567788889999999999999999999999998643221     123578899999999999999999999875    3


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      .|++||  .+.....+..+...+.++.|.+....               ..+.++.++.+.+|+....    +.+..+.+
T Consensus       130 ~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~---------------~l~s~s~D~~v~lwd~~~~----~~~~~l~~  188 (611)
T 1nr0_A          130 HVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPF---------------RIISGSDDNTVAIFEGPPF----KFKSTFGE  188 (611)
T ss_dssp             EEEETT--TCCBCBCCCCCSSCEEEEEECSSSSC---------------EEEEEETTSCEEEEETTTB----EEEEEECC
T ss_pred             EEEEee--CCCCcceecCCCCCceEEEECCCCCe---------------EEEEEeCCCeEEEEECCCC----eEeeeecc
Confidence            677777  45566677777777777777765432               2345566777888875442    44677899


Q ss_pred             cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--------cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd  457 (519)
                      |...|.+++|+|++ +|++++.|++|+|||+.+++++..+        .|...|++++|+| ++.+|++++.|++|+|||
T Consensus       189 H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWN  267 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred             ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEe
Confidence            99999999999999 9999999999999999999998887        5999999999999 999999999999999999


Q ss_pred             cCCCcEEe--------------------------------------------eccCCCceEEEEEeeCCCEEEEEecCCe
Q 010037          458 VRRCQVVD--------------------------------------------YTDIREIVSAVCYCPDGKGGIVGTMTGN  493 (519)
Q Consensus       458 ~~~~~~~~--------------------------------------------~~~~~~~V~~v~~spdg~~l~sgs~dg~  493 (519)
                      +.+++.+.                                            ..+|...|++++|+|||++|++++.||.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~  347 (611)
T 1nr0_A          268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH  347 (611)
T ss_dssp             TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence            98865431                                            2368889999999999999999999999


Q ss_pred             EEEEECCCCeeee
Q 010037          494 CRFYDIKGMQIFD  506 (519)
Q Consensus       494 v~iwdl~~~~l~~  506 (519)
                      |++||+.+++...
T Consensus       348 v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          348 INSWDISTGISNR  360 (611)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEECCCCceee
Confidence            9999999876644

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.9e-31  Score=272.14  Aligned_cols=250  Identities=23%  Similarity=0.370  Sum_probs=199.4

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      ..+.+|.+.|.+++|+|++++|++|+.||+|+||+......       ...+.+|...|.+++|+|+|++|++|+.|+.|
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v  132 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------THAIKLHCPWVMECAFAPNGQSVACGGLDSAC  132 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------EEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------ceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence            44677888999999999999999999999999999875432       34578899999999999999999999999999


Q ss_pred             EEEecccCe-------eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037          309 RVWKVIEHE-------RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (519)
Q Consensus       309 ~iWd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (519)
                      ++|++.+..       ....+..+...+..+.+.+....               ..+.++.++.+.+|+.....    .+
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~---------------~l~s~s~D~~i~~wd~~~~~----~~  193 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET---------------RLITGSGDQTCVLWDVTTGQ----RI  193 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS---------------CEEEECTTSCEEEECTTTCC----EE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC---------------EEEEECCCCcEEEEEcCCCc----EE
Confidence            999996542       12223334444444433332221               23566778889999876532    23


Q ss_pred             eEe-----eccCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECC-CCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCe
Q 010037          382 HEF-----QGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK  452 (519)
Q Consensus       382 ~~~-----~~h~~~V~~l~~sp-~~-~L~sgs~Dg~V~lWdl~-~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (519)
                      ..+     .+|...|.+++|++ ++ +|++|+.|++|++||++ ..+++..+. |...|++++|+| ++.+|++|+.||+
T Consensus       194 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~  272 (380)
T 3iz6_a          194 SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGT  272 (380)
T ss_dssp             EEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSC
T ss_pred             EEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCe
Confidence            333     67999999999987 55 99999999999999998 456677765 999999999999 9999999999999


Q ss_pred             EEEEEcCCCcEEee-ccC-------CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          453 VRIWEVRRCQVVDY-TDI-------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       453 V~iwd~~~~~~~~~-~~~-------~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |+|||+++++.+.. ..+       ...|++++|+|+|++|++|+.||.|++||+.+++..
T Consensus       273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~  333 (380)
T 3iz6_a          273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV  333 (380)
T ss_dssp             EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred             EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence            99999999887742 222       234899999999999999999999999999876654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.6e-31  Score=265.61  Aligned_cols=249  Identities=18%  Similarity=0.210  Sum_probs=192.8

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I  308 (519)
                      +.+|.+.+.+++|+|+|++||+|+.|++|+||++......     ....+.+|.++|++++|++  ++++|+||+.|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-----~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-----EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-----EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence            4568888999999999999999999999999998754321     2246789999999999986  48999999999999


Q ss_pred             EEEecccCe--eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       309 ~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      ++||+.++.  ....+..+...+.++.|.+.....++              +.++.++.+.+|+...... ......+.+
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~l--------------asgs~D~~i~lwd~~~~~~-~~~~~~~~~  148 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLIL--------------ACGSSDGAISLLTYTGEGQ-WEVKKINNA  148 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCE--------------EEECSSSCEEEEEECSSSC-EEECCBTTS
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEE--------------EEEcCCCCEEEEecCCCCC-cceeeeecc
Confidence            999998874  44455667777888888776433222              2344555666665432110 011344568


Q ss_pred             cCCCeeEEEEcCC-----------------C-eEEEEeCCCcEEEEECCCC---eEEEEec-CCCcEEEEEEeeCCC---
Q 010037          387 HSSEVLDLSWSKN-----------------G-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDD---  441 (519)
Q Consensus       387 h~~~V~~l~~sp~-----------------~-~L~sgs~Dg~V~lWdl~~~---~~~~~~~-h~~~V~~v~fsp~d~---  441 (519)
                      |...|.+++|+|+                 + +|++|+.|++|+|||++..   +++..+. |...|++++|+| ++   
T Consensus       149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp-~~~~~  227 (316)
T 3bg1_A          149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP-SIGLP  227 (316)
T ss_dssp             SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC-CSSCS
T ss_pred             ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC-CCCCC
Confidence            9999999999997                 3 8999999999999999765   4555554 999999999999 64   


Q ss_pred             -CEEEEEeCCCeEEEEEcCCCc-----EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          442 -NYFISGSIDGKVRIWEVRRCQ-----VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       442 -~~l~sgs~Dg~V~iwd~~~~~-----~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                       .+|++|+.|++|+|||+.+..     ...+..|...|.+++|+|+|++|++++.||.|+||+..
T Consensus       228 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence             899999999999999997621     12345678899999999999999999999999999976

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.9e-31  Score=263.70  Aligned_cols=248  Identities=20%  Similarity=0.204  Sum_probs=184.3

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      |...+.+++|+|++.+|++|+.|++|+||+................+.+|.+.|.+++|+|++++||+|+.|++|++||+
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            56677889999999999999999999999986432111122234567899999999999999999999999999999999


Q ss_pred             ccC----eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          314 IEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       314 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      ...    +++..+..+...+.++.|.++..                ..+.++.++.+.+|+....  ..+++..+.+|..
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~----------------~l~s~s~D~~i~iW~~~~~--~~~~~~~~~~h~~  198 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVKHVIWHPSEA----------------LLASSSYDDTVRIWKDYDD--DWECVAVLNGHEG  198 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEEEEEECSSSS----------------EEEEEETTSCEEEEEEETT--EEEEEEEECCCSS
T ss_pred             cCCCCCeEEEEEeccCCCceEEEEECCCCC----------------EEEEEcCCCeEEEEECCCC--CeeEEEEccCCCC
Confidence            432    34555666666666776665432                2234555667777754321  1145678899999


Q ss_pred             CeeEEEEcCC--C-eEEEEeCCCcEEEEECCCC--------eEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          390 EVLDLSWSKN--G-FLLSSSADKTVRLWQVGID--------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       390 ~V~~l~~sp~--~-~L~sgs~Dg~V~lWdl~~~--------~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      .|.+++|+|+  + +|++++.|++|+|||+..+        .+...+.  |...|++++|+| + .+|++++.||.|+||
T Consensus       199 ~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~-~~l~s~~~dg~v~iw  276 (330)
T 2hes_X          199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N-GLIASVGADGVLAVY  276 (330)
T ss_dssp             CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T-SCEEEEETTSCEEEE
T ss_pred             cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C-CEEEEEeCCCEEEEE
Confidence            9999999998  5 8999999999999998764        4445553  889999999997 4 489999999999999


Q ss_pred             EcCCCc--EE-e-eccCCC-ceEEEEEee--CCCEEEEEecCCeEEEEECCC
Q 010037          457 EVRRCQ--VV-D-YTDIRE-IVSAVCYCP--DGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       457 d~~~~~--~~-~-~~~~~~-~V~~v~~sp--dg~~l~sgs~dg~v~iwdl~~  501 (519)
                      |..+++  .. . ...|.. .|++++|+|  ++++|++|+.||.|+|||+.+
T Consensus       277 ~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            998874  33 2 346766 899999999  789999999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.98  E-value=7.1e-31  Score=264.22  Aligned_cols=251  Identities=19%  Similarity=0.219  Sum_probs=196.4

Q ss_pred             CeeeEee-cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          230 AMARIID-RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       230 ~~~~~~~-~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      .+..|.+ .+.+++|+|+|++||+|+.|++|+||++........    .....+|...|.+++|+|++++||+|+.|++|
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----SVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----EEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----eeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            3445555 667899999999999999999999999875432111    11235899999999999999999999999999


Q ss_pred             EEEecccCe--eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       309 ~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      +||++..+.  ++..+..+...+.++.|.++..                ..+.++.++.+.+|+...... ...+..+.+
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~----------------~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~  148 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN----------------LLATCSRDKSVWVWEVDEEDE-YECVSVLNS  148 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEEECTTSC-EEEEEEECC
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCC----------------EEEEEECCCeEEEEECCCCCC-eEEEEEecC
Confidence            999997764  4556666777777777766432                123445566677776543211 123566789


Q ss_pred             cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE--EEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC--LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-  461 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~--~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-  461 (519)
                      |...|.+++|+|++ +|++++.|++|++||+.++..  ...+. |...|++++|+| ++++|++|+.|++|+|||.... 
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~  227 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPG  227 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTT
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCC
Confidence            99999999999999 999999999999999988764  34454 999999999999 9999999999999999997432 


Q ss_pred             --------------cEE-eec-cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          462 --------------QVV-DYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       462 --------------~~~-~~~-~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                                    +++ ... .|...|++++|+|++..|++++.|+.|++|+...+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             CTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             CCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence                          112 222 37889999999999999999999999999998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.7e-30  Score=259.85  Aligned_cols=250  Identities=22%  Similarity=0.246  Sum_probs=192.2

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCcccccccccccccee-ec-CCCCEEEEEEccCCCEEEEEeCCC
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LA-HEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l-~~-H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      ..+.+|.+.+.+++|+|+  +||+|+.|++|+||++......     ....+ .+ |.+.|.+++|+|++++||+|+.|+
T Consensus         8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-----LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----EEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----EEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            346677888889999988  9999999999999998753211     11223 34 999999999999999999999999


Q ss_pred             cEEEEecccC-------eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          307 TVRVWKVIEH-------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       307 ~I~iWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                      +|+||++...       +....+..+...+.++.|.++..                ..+.++.++.+.+|+........+
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~----------------~las~s~D~~v~iwd~~~~~~~~~  144 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY----------------YLATCSRDKSVWIWETDESGEEYE  144 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC----------------EEEEEETTSCEEEEECCTTCCCCE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC----------------EEEEEeCCCEEEEEeccCCCCCeE
Confidence            9999998532       33444555555566666655421                234556677788887643222234


Q ss_pred             ceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEec-CCCcEEEEEEeeCC--CCEEEEEeCCCeE
Q 010037          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVD--DNYFISGSIDGKV  453 (519)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~--~~~~~~~-h~~~V~~v~fsp~d--~~~l~sgs~Dg~V  453 (519)
                      .+..+.+|...|.+++|+|++ +|++++.|++|++||+.++  +++..+. |...|++++|+| +  +.+|++|+.|++|
T Consensus       145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v  223 (330)
T 2hes_X          145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTV  223 (330)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCE
T ss_pred             EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeE
Confidence            567788999999999999999 9999999999999999876  5677775 999999999999 6  6789999999999


Q ss_pred             EEEEcCCC--------cEE-eecc-CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          454 RIWEVRRC--------QVV-DYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       454 ~iwd~~~~--------~~~-~~~~-~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +|||++.+        ... .+.. |...|++++|++++ +|++++.||.|+|||+.+++
T Consensus       224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred             EEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence            99999764        222 2333 88899999999766 79999999999999998763

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.98  E-value=2.8e-30  Score=255.11  Aligned_cols=244  Identities=19%  Similarity=0.270  Sum_probs=196.6

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +..+...+.+++|+|++++|++|+.|++|+||++.....       ...+.+|.+.|++++|+|++++|++|+.||+|++
T Consensus        51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~l  123 (304)
T 2ynn_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL  123 (304)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE-------EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEE
Confidence            344556677899999999999999999999999875442       3457899999999999999999999999999999


Q ss_pred             EecccC-eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          311 WKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       311 Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      ||+.++ .....+..+...+.++.|.+.....               .+.++.++.+.+|+.....   .......+|..
T Consensus       124 Wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~---------------l~sgs~D~~v~iwd~~~~~---~~~~~~~~~~~  185 (304)
T 2ynn_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPST---------------FASGCLDRTVKVWSLGQST---PNFTLTTGQER  185 (304)
T ss_dssp             EEGGGTTEEEEEECCCCSCEEEEEECTTCTTE---------------EEEEETTSEEEEEETTCSS---CSEEEECCCTT
T ss_pred             EECCCCcchhhhhcccCCcEEEEEECCCCCCE---------------EEEEeCCCeEEEEECCCCC---ccceeccCCcC
Confidence            999887 4445566677677777776543322               2345667778888764321   11223345778


Q ss_pred             CeeEEEEcC--CC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-
Q 010037          390 EVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (519)
Q Consensus       390 ~V~~l~~sp--~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-  464 (519)
                      .+..++|+|  ++ +|++|+.|++|++||+++++++..+. |...|++++|+| ++.+|++|+.||+|+|||+.+++++ 
T Consensus       186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~  264 (304)
T 2ynn_A          186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEK  264 (304)
T ss_dssp             CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceee
Confidence            899999987  55 99999999999999999999999886 999999999999 8999999999999999999999887 


Q ss_pred             eeccCCCceEEEEEeeCCC--EEEEEecCCeEEEEECCC
Q 010037          465 DYTDIREIVSAVCYCPDGK--GGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~--~l~sgs~dg~v~iwdl~~  501 (519)
                      .+..+...+.+++|+|++.  ++++|+. ..+.+|++.+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~~  302 (304)
T 2ynn_A          265 TLNVGLERSWCIATHPTGRKNYIASGFD-NGFTVLSLGN  302 (304)
T ss_dssp             EECCSSSSEEEEEECTTCGGGCEEEEET-TEEEEEECC-
T ss_pred             eccCCCccEEEEEECCCCCceEEEEecC-CceEEEEecc
Confidence            4667788999999999885  4666664 4577888754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.7e-30  Score=257.78  Aligned_cols=266  Identities=12%  Similarity=0.133  Sum_probs=215.6

Q ss_pred             ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      +...+.+|...+.+++|+|++++|++|+.||.|+||++....       ....+.+|...|.+++|+|++++|++++.||
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg   96 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADY   96 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCC
Confidence            334577888899999999999999999999999999987543       2345788999999999999999999999999


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeE-------------EeeccCCc----------------------
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI-------------PIDVDKEK----------------------  351 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~----------------------  351 (519)
                      .|++||+.+++....+. +...+.++.+.+.....+.             .+......                      
T Consensus        97 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B           97 SIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             eEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            99999999998888777 4555666666554332111             11111100                      


Q ss_pred             --e-------eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE
Q 010037          352 --I-------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC  421 (519)
Q Consensus       352 --~-------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~  421 (519)
                        +       .....+.++.++.+.+|+....   ...+..+..|...|.+++|+|++ +|++++.|+.|++||+.++++
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNN---YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSEEEEEETTTT---TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cceeEEEEcCCCCEEEEEcCCCEEEEEECCCC---cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence              0       0012233445566666665431   34577788899999999999999 999999999999999999999


Q ss_pred             EEEecCCCcEEEEEEeeCCCCEEEEEeCCC--------------eEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEE
Q 010037          422 LRVFSHNNYVTSVAFNPVDDNYFISGSIDG--------------KVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGI  486 (519)
Q Consensus       422 ~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg--------------~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~  486 (519)
                      +..+.+...+.+++|+| ++.++++++.++              .|++||+.+++.+ .+..|...|++++|+|+|++|+
T Consensus       253 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  331 (369)
T 3zwl_B          253 LKKYETDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA  331 (369)
T ss_dssp             EEEEECSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eeeecCCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEE
Confidence            99999999999999999 999999999988              8999999998877 5778999999999999999999


Q ss_pred             EEecCCeEEEEECCCCee
Q 010037          487 VGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       487 sgs~dg~v~iwdl~~~~l  504 (519)
                      +++.||.|++|++.++.+
T Consensus       332 s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          332 SGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EEETTSEEEEEEECHHHH
T ss_pred             EEcCCCeEEEEECccccc
Confidence            999999999999987543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=7e-30  Score=261.66  Aligned_cols=241  Identities=22%  Similarity=0.330  Sum_probs=189.3

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      .+.+++|+|++++|++|+.|+.|+||++....       ....+.+|...|.+++|+|++++|++|+.|++|++||+.++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~  197 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  197 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence            36678999999999999999999999987543       22457899999999999999999999999999999999999


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc---cceeEeeccCCCeeE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE---KPLHEFQGHSSEVLD  393 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~  393 (519)
                      ++...+... ..+.++.+.+....               ..+.++.++.+.+|+........   .......+|...|.+
T Consensus       198 ~~~~~~~~~-~~v~~~~~~~~~~~---------------~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          198 QCSLTLSIE-DGVTTVAVSPGDGK---------------YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             EEEEEEECS-SCEEEEEECSTTCC---------------EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             eeEEEEEcC-CCcEEEEEECCCCC---------------EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence            877666532 23344444432222               22344556677777765432211   111223679999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCC------------eEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGID------------RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~------------~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~  459 (519)
                      ++|+|++ +|++++.|++|++||+++.            .+...+ .|...|++++|+| ++.+|++|+.|+.|++||+.
T Consensus       262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECC
Confidence            9999999 9999999999999999763            233344 4999999999999 89999999999999999999


Q ss_pred             CCcEE-eeccCCCceEEEEEee------CCCEEEEEecCCeEEEEECCC
Q 010037          460 RCQVV-DYTDIREIVSAVCYCP------DGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       460 ~~~~~-~~~~~~~~V~~v~~sp------dg~~l~sgs~dg~v~iwdl~~  501 (519)
                      +++.+ .+.+|...|.+++|+|      ++++|++|+.||.|+||++..
T Consensus       341 ~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          341 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            98877 5778999999999986      688999999999999999854

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=4e-29  Score=247.94  Aligned_cols=247  Identities=16%  Similarity=0.179  Sum_probs=205.8

Q ss_pred             eEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceee--cCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      .|...+.+++|+|++++|++++ ||.|++|++......    .....+.  +|...|.+++|+|++++|++++.||.|++
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce----eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            4567788899999999999998 999999999864421    1112233  79999999999999999999999999999


Q ss_pred             EecccCe--eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          311 WKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       311 Wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      ||+.+++  ....+..+...+.++.+.+...                ..+.++.++.+.+|+...    .+.+..+.+|.
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~l~~~~~dg~v~~~d~~~----~~~~~~~~~~~  183 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDSK----------------VCFSCCSDGNIAVWDLHN----QTLVRQFQGHT  183 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTT----TEEEEEECCCS
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCCC----------------EEEEEeCCCcEEEEeCCC----Cceeeeeeccc
Confidence            9998877  4444555555555555554321                112334456677777654    34567788899


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec
Q 010037          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (519)
Q Consensus       389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~  467 (519)
                      ..|.+++|+|++ +|++++.|+.|++||+++++.+..+.+...+.+++|+| ++++|++++.|+.|++||+++++.....
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~~~~  262 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeEEEc
Confidence            999999999999 99999999999999999999999999999999999999 9999999999999999999999988889


Q ss_pred             cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       468 ~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      .|...|++++|+|++++|++++.||.|++||+.+++..
T Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            99999999999999999999999999999999987755

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=3e-29  Score=256.96  Aligned_cols=249  Identities=21%  Similarity=0.294  Sum_probs=196.6

Q ss_pred             eEeecccceeecCCCCeEEeeecCCeEEEeeCCcccccccccccc------------ceeecCCCCEEEEEEccCCCEEE
Q 010037          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSILTMKFSLDGQYLA  300 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~------------~~l~~H~~~I~~l~fspdg~~La  300 (519)
                      .|...+.+++|+|+|++||+|+ ++.++||++..+..... +...            .....+...|.+++|+|+|++||
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            4667788899999999999986 68999999876543211 0000            00112334599999999999999


Q ss_pred             EEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (519)
Q Consensus       301 Sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (519)
                      +|+.|++|+|||+.+++....+..+...+.++.|.+...                ..+.++.++.+.+|+.....    .
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~----------------~l~s~s~d~~v~iwd~~~~~----~  199 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD----------------KLVSGSGDRTVRIWDLRTGQ----C  199 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTE----E
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC----------------EEEEecCCCcEEEEECCCCe----e
Confidence            999999999999999998888888777777777765442                12345667788888765432    2


Q ss_pred             eeEeeccCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEe--------cCCCcEEEEEEeeCCCCEEEEEeCC
Q 010037          381 LHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSID  450 (519)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp-~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--------~h~~~V~~v~fsp~d~~~l~sgs~D  450 (519)
                      ...+ .+...+.+++|+| ++ +|++|+.|++|++||++++.++..+        .|...|++++|+| ++.+|++|+.|
T Consensus       200 ~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d  277 (393)
T 1erj_A          200 SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLD  277 (393)
T ss_dssp             EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             EEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCC
Confidence            3333 3667899999999 67 9999999999999999999888776        3889999999999 99999999999


Q ss_pred             CeEEEEEcCCCc-------------EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          451 GKVRIWEVRRCQ-------------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       451 g~V~iwd~~~~~-------------~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ++|++||+++..             ...+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+
T Consensus       278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~  345 (393)
T 1erj_A          278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  345 (393)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            999999997632             2256789999999999999999999999999999999887654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.6e-30  Score=257.08  Aligned_cols=252  Identities=18%  Similarity=0.251  Sum_probs=202.5

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC--CCEEEEEeCC
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGED  305 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~LaSgs~D  305 (519)
                      ...+.+|...+.+++|+|++++||+|+.||.|+||++.....     .....+.+|.+.|++++|+++  +++|++|+.|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-----eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            345778889999999999999999999999999999873222     223457889999999999987  9999999999


Q ss_pred             CcEEEEecccCe--eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          306 GTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       306 g~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      |.|++||+.+++  ....+..+...+.++.|.+......              .+.++.++.+.+|+......  .....
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------l~~~~~d~~i~v~d~~~~~~--~~~~~  142 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--------------LLVASSDGKVSVVEFKENGT--TSPII  142 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--------------EEEEETTSEEEEEECCTTSC--CCEEE
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE--------------EEEecCCCcEEEEecCCCCc--eeeEE
Confidence            999999999987  5555666666677777766531211              23345566777777654321  23456


Q ss_pred             eeccCCCeeEEEEcC-------------CC-eEEEEeCCCcEEEEECCCCe----EEEEec-CCCcEEEEEEeeCC---C
Q 010037          384 FQGHSSEVLDLSWSK-------------NG-FLLSSSADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVD---D  441 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp-------------~~-~L~sgs~Dg~V~lWdl~~~~----~~~~~~-h~~~V~~v~fsp~d---~  441 (519)
                      +.+|...|.+++|+|             ++ +|++++.|+.|++||++++.    ++..+. |...|++++|+| +   +
T Consensus       143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~  221 (379)
T 3jrp_A          143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLR  221 (379)
T ss_dssp             EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSS
T ss_pred             ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCC
Confidence            778999999999999             56 99999999999999998764    334444 899999999999 7   8


Q ss_pred             CEEEEEeCCCeEEEEEcCCCc----EE--eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          442 NYFISGSIDGKVRIWEVRRCQ----VV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       442 ~~l~sgs~Dg~V~iwd~~~~~----~~--~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .+|++++.||.|+|||++++.    ..  ....+...|++++|+|+|++|++++.||.|++|++..
T Consensus       222 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999999999999999863    11  3445888999999999999999999999999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.3e-29  Score=249.73  Aligned_cols=257  Identities=16%  Similarity=0.187  Sum_probs=200.8

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I  308 (519)
                      +.+|.+.+.+++|+|++++|++|+.||.|+||++.......   .....+.+|...|.+++|+|  ++++|++|+.||.|
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW---ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE---EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc---eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            45678889999999999999999999999999998543221   23346789999999999999  69999999999999


Q ss_pred             EEEecccC---------eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          309 RVWKVIEH---------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       309 ~iWd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                      ++||+.++         +....+..+...+.++.|.+.....              ..+.++.++.+.+|+.........
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--------------KLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--------------EEEEEETTCEEEEEECSSTTCTTC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--------------EEEEecCCCcEEEecCCChHHhcc
Confidence            99999887         4455555566666666666552121              123345566777777654332211


Q ss_pred             c---------eeEeeccCCCeeEEEEcCC---C-eEEEEeCCCcEEEEECCCCeE--EEEec-CCCcEEEEEEeeCCC--
Q 010037          380 P---------LHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDRC--LRVFS-HNNYVTSVAFNPVDD--  441 (519)
Q Consensus       380 ~---------~~~~~~h~~~V~~l~~sp~---~-~L~sgs~Dg~V~lWdl~~~~~--~~~~~-h~~~V~~v~fsp~d~--  441 (519)
                      .         .....+|...+.+++|+|+   + .|++++.|+.+.+|+...++.  +..+. |...|++++|+| ++  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~  228 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGR  228 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSC
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCC
Confidence            1         0112368889999999997   5 999999999999998888765  44444 899999999999 76  


Q ss_pred             --CEEEEEeCCCeEEEEEcCCC----------------------------------------------cEE-eeccCCCc
Q 010037          442 --NYFISGSIDGKVRIWEVRRC----------------------------------------------QVV-DYTDIREI  472 (519)
Q Consensus       442 --~~l~sgs~Dg~V~iwd~~~~----------------------------------------------~~~-~~~~~~~~  472 (519)
                        ++|++|+.||.|++||++++                                              +.+ .+..|...
T Consensus       229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  308 (351)
T 3f3f_A          229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE  308 (351)
T ss_dssp             SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC
T ss_pred             cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc
Confidence              89999999999999999874                                              222 46678899


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |++++|+|+|++|++|+.||.|+||++.+++.+
T Consensus       309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             EEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            999999999999999999999999999987544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=2.3e-29  Score=276.90  Aligned_cols=260  Identities=20%  Similarity=0.302  Sum_probs=213.2

Q ss_pred             cccCCeeeEeecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC
Q 010037          226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (519)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~  304 (519)
                      ...+.+.+|.+.|.+++|+|++ ++|++|+.|++|+||++.......  ......+.+|...|.+++|+|++++|++|+.
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--GVAQRRLTGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--CEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--ccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence            3345678899999999999875 789999999999999987543221  1223467899999999999999999999999


Q ss_pred             CCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe
Q 010037          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (519)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (519)
                      ||+|+|||+.++.....+..|...+.++.|.+....                .+.++.++.+.+|+...... .......
T Consensus       451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~----------------l~s~s~D~~i~iwd~~~~~~-~~~~~~~  513 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ----------------IVSASRDRTIKLWNTLGECK-YTISEGG  513 (694)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSC----------------EEEEETTSCEEEECTTSCEE-EEECSST
T ss_pred             CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCE----------------EEEEeCCCEEEEEECCCCcc-eeeccCC
Confidence            999999999999998888888888888877765422                23456677788887532110 0001112


Q ss_pred             eccCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          385 QGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       385 ~~h~~~V~~l~~sp~~---~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      .+|...|.+++|+|++   .|++++.|++|++||++++++...+. |...|++++|+| ++++|++|+.||+|+|||+++
T Consensus       514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTT
T ss_pred             CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC
Confidence            4689999999999986   79999999999999999999988886 999999999999 999999999999999999999


Q ss_pred             CcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ++.+....+...|.+++|+|++.+|++++ ++.|+|||+.+++++.
T Consensus       593 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~  637 (694)
T 3dm0_A          593 GKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE  637 (694)
T ss_dssp             TEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence            99887666778899999999998777765 6679999999987654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=1.9e-29  Score=270.32  Aligned_cols=236  Identities=24%  Similarity=0.358  Sum_probs=196.6

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +..+...+.+++|+|++++|++|+.+|.|++|+...        .....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus       340 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~  411 (577)
T 2ymu_A          340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL  411 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence            344556667799999999999999999999999642        123457889999999999999999999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ||. +++.+..+..+...+.++.+.++...                .+.++.++.+.+|+.     ..+.+..+.+|...
T Consensus       412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~----------------l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~  469 (577)
T 2ymu_A          412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQT----------------IASASDDKTVKLWNR-----NGQLLQTLTGHSSS  469 (577)
T ss_dssp             ECT-TCCEEEEEECCSSCEEEEEECTTSSE----------------EEEEETTSEEEEEET-----TSCEEEEEECCSSC
T ss_pred             EeC-CCCEEEEecCCCCCeEEEEECCCCCE----------------EEEEcCCCEEEEEEC-----CCCEEEEEcCCCCC
Confidence            995 56666777777776667766654321                123445666777753     34567888999999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD  468 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~  468 (519)
                      |++++|+|++ +|++++.|++|+|||. ++++++.+. |...|++|+|+| ++++|++++.||.|+|||.....+..+.+
T Consensus       470 v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~~~~~~~~~~~  547 (577)
T 2ymu_A          470 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG  547 (577)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTSCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeCCCCEEEEEcC
Confidence            9999999999 9999999999999996 566777665 999999999999 99999999999999999975444446889


Q ss_pred             CCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       469 ~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      |...|++++|+|||++|++++.||.|++||
T Consensus       548 h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          548 HSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999999999999999997

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=6.6e-29  Score=245.43  Aligned_cols=242  Identities=17%  Similarity=0.307  Sum_probs=197.1

Q ss_pred             eeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 010037          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iW  311 (519)
                      ..|...+.+++|+|++++|++|+.||.|++|++....       ....+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus        62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  134 (312)
T 4ery_A           62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW  134 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence            3455667789999999999999999999999987543       234578999999999999999999999999999999


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-eccCCC
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSE  390 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~  390 (519)
                      |+.+++....+..+...+.++.+.++..                ..+.++.++.+.+|+....    +.+..+ ..|...
T Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~  194 (312)
T 4ery_A          135 DVKTGKCLKTLPAHSDPVSAVHFNRDGS----------------LIVSSSYDGLCRIWDTASG----QCLKTLIDDDNPP  194 (312)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTTC----CEEEEECCSSCCC
T ss_pred             ECCCCEEEEEecCCCCcEEEEEEcCCCC----------------EEEEEeCCCcEEEEECCCC----ceeeEEeccCCCc
Confidence            9999988888877776666666655432                1234455667777776542    223333 456778


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcE--EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-e
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D  465 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~  465 (519)
                      +.+++|+|++ +|++++.|+.|++||+.+++++..+. |...+  ....+++.++.+|++|+.||.|++||+.+++++ .
T Consensus       195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  274 (312)
T 4ery_A          195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK  274 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence            9999999999 99999999999999999999998886 54433  334555448899999999999999999999887 5


Q ss_pred             eccCCCceEEEEEeeCCCEEEEEe--cCCeEEEEECC
Q 010037          466 YTDIREIVSAVCYCPDGKGGIVGT--MTGNCRFYDIK  500 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg~~l~sgs--~dg~v~iwdl~  500 (519)
                      +..|...|.+++|+|++++|++++  .||.|++|+..
T Consensus       275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            778999999999999999999987  69999999863

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=4.3e-30  Score=266.73  Aligned_cols=246  Identities=16%  Similarity=0.192  Sum_probs=182.2

Q ss_pred             eeeEeecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcE
Q 010037          231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I  308 (519)
                      ...+..+|.+++|+| ++.+||+|+.||.|+|||+......     ....+.+|.+.|++|+|+| ++++|+||+.||+|
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            455667789999999 5678999999999999998754422     1123568999999999998 78999999999999


Q ss_pred             EEEecccCeeeceeeccCC--CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          309 RVWKVIEHERLDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      +|||+.++........+..  ...++.+.++..                ..+.++.++.+.+|+..     .+.+..+.+
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~l~~g~~dg~i~~wd~~-----~~~~~~~~~  248 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSR----------------MVVTGDNVGNVILLNMD-----GKELWNLRM  248 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTT----------------EEEEECSSSBEEEEESS-----SCBCCCSBC
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCC----------------EEEEEeCCCcEeeeccC-----cceeEEEec
Confidence            9999977654332222222  223344433221                22345667777777654     355677889


Q ss_pred             cCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe----cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       387 h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      |...|.+++|+|++  +|++++.|++|+|||+++.+....+    .|...|++++|+| ++.+|++|+.||+|+|||+.+
T Consensus       249 h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSS
T ss_pred             ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCC
Confidence            99999999999987  7889999999999999887654433    4899999999999 999999999999999999875


Q ss_pred             CcEEe--------------------------------------------------------------eccCCCceEEE-E
Q 010037          461 CQVVD--------------------------------------------------------------YTDIREIVSAV-C  477 (519)
Q Consensus       461 ~~~~~--------------------------------------------------------------~~~~~~~V~~v-~  477 (519)
                      +....                                                              ...|...|.++ +
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~  407 (435)
T 4e54_B          328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNE  407 (435)
T ss_dssp             SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEE
T ss_pred             CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEE
Confidence            32110                                                              01233445555 6


Q ss_pred             EeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          478 YCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       478 ~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      |+|+|++|++|+ |+.|+||++++++.
T Consensus       408 fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          408 FNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             ECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             ECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            899999888876 78899999987764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=1.3e-28  Score=263.85  Aligned_cols=239  Identities=24%  Similarity=0.364  Sum_probs=198.9

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +.+|...+.+++|+|++.++++++.||.|++|+.....        ...+.+|...|.+++|+|++++|++|+.||.|++
T Consensus       299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~  370 (577)
T 2ymu_A          299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  370 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            44556677789999999999999999999999976432        2356789999999999999999999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      |+. +++.+..+..+...+.++.+.++...                .+.++.++.+.+|+.     ..+.+..+.+|...
T Consensus       371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~----------------l~~~~~d~~v~~~~~-----~~~~~~~~~~~~~~  428 (577)
T 2ymu_A          371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQT----------------IASASDDKTVKLWNR-----NGQLLQTLTGHSSS  428 (577)
T ss_dssp             EET-TCCEEEEEECCSSCEEEEEECTTSSC----------------EEEEETTSEEEEECT-----TCCEEEEEECCSSC
T ss_pred             EcC-CCCEEEEecCCCCCeEEEEECCCCCE----------------EEEEeCCCEEEEEeC-----CCCEEEEecCCCCC
Confidence            995 56667777777777777777654421                123445666777763     34567888999999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD  468 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~  468 (519)
                      |++++|+|++ +|++++.|++|++||+.. +.+..+ .|...|++++|+| ++.+|++++.|++|+|||.....+..+..
T Consensus       429 v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~~~~~~~~~~  506 (577)
T 2ymu_A          429 VWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG  506 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCCCCEEEEEeC
Confidence            9999999999 999999999999999754 445554 5999999999999 99999999999999999975444457888


Q ss_pred             CCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       469 ~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      |...|++++|+|||++|++++.||.|+|||+.+
T Consensus       507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred             CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence            999999999999999999999999999999754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=3.6e-28  Score=251.00  Aligned_cols=256  Identities=18%  Similarity=0.278  Sum_probs=197.2

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~  319 (519)
                      .++|+++ ++||+|. |++|+|||...+....     ...+.+|...|++|+|+|+|++||+|+.||.|+|||+.+++.+
T Consensus       110 ~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-----~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          110 LVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-----LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-----EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             eEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-----EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence            4889976 5777775 9999999988654321     1124578889999999999999999999999999999999998


Q ss_pred             ceeeccCCCCceEEEeec------CCCCeEEeeccCCce------------e-------eeeeeccCCCeeEEEeCCccc
Q 010037          320 DGFDVQDTDPSCLYFTIN------HLSQLIPIDVDKEKI------------D-------KTKSLRKSSDLTCVVLPPKVF  374 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~------------~-------~~~~~~~s~~~~~~~~~~~~~  374 (519)
                      ..+..+...+.++.+...      ....+..+.......            .       ......++.++.+.+|+....
T Consensus       183 ~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          183 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            888877766665544321      011111111111000            0       011234455667777776655


Q ss_pred             cccccceeEeeccCCCeeEEEEcCCC--eEEE--EeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe--
Q 010037          375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS--SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS--  448 (519)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~s--gs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs--  448 (519)
                      ......+.....|...|.+++|+|.+  .+++  |+.|++|++||+.+++++..+.+...+.++.|+| +++.+++++  
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~-~~~~lv~~sg~  341 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHGF  341 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEET-TTTEEEEEECT
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecC-CCCeEEEEEec
Confidence            55555677888999999999999987  5555  4589999999999999999999888999999999 888887765  


Q ss_pred             CCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          449 IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       449 ~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      .|+.|+|||+.+++++ .+.+|...|++++|+|||++|++|+.||+|+|||+.+..
T Consensus       342 ~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            7899999999999887 578899999999999999999999999999999997643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=5.1e-29  Score=274.10  Aligned_cols=274  Identities=18%  Similarity=0.265  Sum_probs=211.2

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeecccceeecCCCCeEEeeecCCeE
Q 010037          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV  259 (519)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I  259 (519)
                      ++.|.....++++.     +|.+.....               .+......+.+|...+.+++|+|++++|++|+.||+|
T Consensus       395 ~~~l~s~s~D~~i~-----~W~~~~~~~---------------~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          395 ADIIVSASRDKSII-----LWKLTKDDK---------------AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             CSEEEEEETTSEEE-----EEECCCSTT---------------CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCEEEEEeCCCcEE-----EEEccCCCc---------------ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            35677777777777     787643211               0111123456777888899999999999999999999


Q ss_pred             EEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeecee---eccCCCCceEEEee
Q 010037          260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF---DVQDTDPSCLYFTI  336 (519)
Q Consensus       260 ~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~---~~~~~~~~~~~~~~  336 (519)
                      +||++....       ..+.+.+|.+.|.+++|+|++++|+||+.|++|+|||+.........   ..+...+.++.+.+
T Consensus       455 ~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  527 (694)
T 3dm0_A          455 RLWDLAAGV-------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP  527 (694)
T ss_dssp             EEEETTTTE-------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred             EEEECCCCc-------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence            999987543       23467899999999999999999999999999999998654332221   12333455555555


Q ss_pred             cCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEE
Q 010037          337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ  415 (519)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWd  415 (519)
                      +....              ..+.++.++.+.+|+...    .+....+.+|...|++++|+|++ +|++|+.|++|+|||
T Consensus       528 ~~~~~--------------~l~s~s~d~~v~vwd~~~----~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd  589 (694)
T 3dm0_A          528 NTLQP--------------TIVSASWDKTVKVWNLSN----CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD  589 (694)
T ss_dssp             CSSSC--------------EEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEE
T ss_pred             CCCcc--------------eEEEEeCCCeEEEEECCC----CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            43221              234556677888887754    34467788999999999999999 999999999999999


Q ss_pred             CCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc--------------------CCCceEE
Q 010037          416 VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--------------------IREIVSA  475 (519)
Q Consensus       416 l~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--------------------~~~~V~~  475 (519)
                      +.+++++..+.+...|++++|+| ++.+|++++ ++.|+|||+++++++....                    +...+++
T Consensus       590 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (694)
T 3dm0_A          590 LAEGKKLYSLEANSVIHALCFSP-NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS  667 (694)
T ss_dssp             TTTTEEEECCBCSSCEEEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred             CCCCceEEEecCCCcEEEEEEcC-CCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence            99999999888888999999999 888877766 5679999999987763211                    1123789


Q ss_pred             EEEeeCCCEEEEEecCCeEEEEECC
Q 010037          476 VCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       476 v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      ++|+|||++|++|+.||.|+||++.
T Consensus       668 l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          668 LNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEecc
Confidence            9999999999999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=6.4e-28  Score=237.71  Aligned_cols=256  Identities=18%  Similarity=0.283  Sum_probs=196.3

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      ++++|++++ +||+| .|++|+|||+..+....     ...+.+|...|++++|+|++++||+|+.||+|++|++.+++.
T Consensus        29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~-----~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQ-----LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEE-----EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEE-----EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence            458999986 77776 59999999988654321     112457888999999999999999999999999999999999


Q ss_pred             eceeeccCCCCceEEEeec------CCCCeEEeeccCC------------ce-------eeeeeeccCCCeeEEEeCCcc
Q 010037          319 LDGFDVQDTDPSCLYFTIN------HLSQLIPIDVDKE------------KI-------DKTKSLRKSSDLTCVVLPPKV  373 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------~~-------~~~~~~~~s~~~~~~~~~~~~  373 (519)
                      +..+..+.....+......      ....+........            ..       .....+.++.++.+.+|+...
T Consensus       102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            8888776655443322111      0000111110000            00       011234566777888888776


Q ss_pred             ccccccceeEeeccCCCeeEEEEcCCC--e--EEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-
Q 010037          374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--F--LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-  448 (519)
Q Consensus       374 ~~~~~~~~~~~~~h~~~V~~l~~sp~~--~--L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-  448 (519)
                      .............|.+.|.+++++|.+  .  +++++.+++|++||...........+...+..+.|+| ++..+++++ 
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~sg  260 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHG  260 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEET-TTTEEEEEEC
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecc-cccceEEEEE
Confidence            665556667778899999999999977  3  3466788999999999999999888999999999999 777777654 


Q ss_pred             -CCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          449 -IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       449 -~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                       .|+.|+|||+++++++ .+.+|.+.|++++|+|||++|++|+.||+|+|||+.+.
T Consensus       261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence             7999999999999887 57889999999999999999999999999999999653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=8.5e-29  Score=251.19  Aligned_cols=213  Identities=9%  Similarity=0.018  Sum_probs=155.0

Q ss_pred             CCCCEEEEEEccCCCEEEEE--eCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeecc
Q 010037          283 HEGSILTMKFSLDGQYLASG--GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (519)
Q Consensus       283 H~~~I~~l~fspdg~~LaSg--s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (519)
                      +...+.+++|||||++||+|  +.|++|+|||+.+++.+..+. +...+..+.|.++...  ++              .+
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~--l~--------------s~  194 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKV--VA--------------YI  194 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSE--EE--------------EE
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCce--EE--------------ec
Confidence            34558899999999998755  478999999999999888776 4456777887765432  11              11


Q ss_pred             CCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCC----cEEEEECCCCeEE----EEe-cCCCc
Q 010037          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK----TVRLWQVGIDRCL----RVF-SHNNY  430 (519)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg----~V~lWdl~~~~~~----~~~-~h~~~  430 (519)
                      +.+..++++......   .......+|...|.+++|+|++ ++++++.|+    ++++|++......    ..+ .|...
T Consensus       195 s~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  271 (365)
T 4h5i_A          195 TGSSLEVISTVTGSC---IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG  271 (365)
T ss_dssp             CSSCEEEEETTTCCE---EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC
T ss_pred             cceeEEEEEeccCcc---eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC
Confidence            222223333221110   0112345688999999999999 899998887    6889998876543    222 38899


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~  508 (519)
                      |++++|+| ++++||+|+.|++|+|||+++++++.  ..+|...|++++|+|||++||+|+.|++|+|||+..+......
T Consensus       272 V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s  350 (365)
T 4h5i_A          272 ITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTS  350 (365)
T ss_dssp             EEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC---
T ss_pred             eEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccC
Confidence            99999999 99999999999999999999999884  3679999999999999999999999999999999765433333


Q ss_pred             ccceeEEe
Q 010037          509 TTAYLFAL  516 (519)
Q Consensus       509 ~~~~~~~l  516 (519)
                      ..+.+..|
T Consensus       351 ~~~~l~kl  358 (365)
T 4h5i_A          351 MKQKISKL  358 (365)
T ss_dssp             --------
T ss_pred             ccccceee
Confidence            33334433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-28  Score=251.22  Aligned_cols=240  Identities=21%  Similarity=0.321  Sum_probs=200.6

Q ss_pred             eEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      .|...+.+++|+|++++|++|+.+|.|++|+...        .....+.+|...|.+++|+|++++|++++.||.|++||
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG--------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN  177 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEE
Confidence            3566888899999999999999999999999331        12235678999999999999999999999999999999


Q ss_pred             cccCeeeceeeccCCC---------------CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc
Q 010037          313 VIEHERLDGFDVQDTD---------------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL  377 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  377 (519)
                      +.+++....+..+...               +.++.+.+..                 ..+.++.++.+.+|+...    
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~g~i~~~d~~~----  236 (425)
T 1r5m_A          178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-----------------KFVIPGPKGAIFVYQITE----  236 (425)
T ss_dssp             TTTTEEEEEECCC---------------CCCBSCCEEEETT-----------------EEEEECGGGCEEEEETTC----
T ss_pred             CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-----------------EEEEEcCCCeEEEEEcCC----
Confidence            9999988877666554               3344443321                 123445566777777654    


Q ss_pred             ccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037          378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (519)
Q Consensus       378 ~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i  455 (519)
                      .+++..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|++++|+| ++ +|++++.|+.|++
T Consensus       237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i  314 (425)
T 1r5m_A          237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRL  314 (425)
T ss_dssp             SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEE
T ss_pred             CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEE
Confidence            35567788999999999999999 99999999999999999998888886 999999999999 77 9999999999999


Q ss_pred             EEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          456 WEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       456 wd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ||+++++.+ .+..|...|++++|+|++++|++++.||.|++||+.+++
T Consensus       315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            999998877 466788999999999999999999999999999998765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-28  Score=239.13  Aligned_cols=258  Identities=20%  Similarity=0.243  Sum_probs=200.7

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      ..+.+|.+.+.+++| |++.+|++|+.||.|+||++....       ....+..|...|.+++|+|++++|++|+.||.|
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   83 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI   83 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-------EEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-------EEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence            446677888889999 999999999999999999986433       234567899999999999999999999999999


Q ss_pred             EEEecccC---eeeceeeccCCCCceEEEeecCCCCeEEeeccC------------------Ccee--------eeeeec
Q 010037          309 RVWKVIEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK------------------EKID--------KTKSLR  359 (519)
Q Consensus       309 ~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~--------~~~~~~  359 (519)
                      ++|++...   +....+..+...+.++.+.   ...++....+.                  ..+.        ....+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            99998664   4455555566666555552   11122111110                  0000        011223


Q ss_pred             cCCCeeEEEeCCccccccccceeEeec-cCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEe
Q 010037          360 KSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN  437 (519)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fs  437 (519)
                      ++.++.+.+|+      ..+....+.. |...|.+++|+|++.|++++.|+.|++||+++++++..+. |...|++++|+
T Consensus       161 ~~~d~~i~i~d------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  234 (313)
T 3odt_A          161 ASADKTIKLWQ------NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL  234 (313)
T ss_dssp             EETTSCEEEEE------TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EECCCCEEEEe------cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence            34455555554      2345566666 9999999999999999999999999999999999998886 99999999999


Q ss_pred             eCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          438 PVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       438 p~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      | ++ .|++++.||.|++||+++++.+ .+..|...|++++|+|+|+ +++++.||.|++||+.++++..
T Consensus       235 ~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          235 P-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             T-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             c-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence            9 77 5889999999999999999877 4677888999999999998 6679999999999999877654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-29  Score=261.46  Aligned_cols=265  Identities=10%  Similarity=0.145  Sum_probs=196.2

Q ss_pred             eeEeecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          232 ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       232 ~~~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      .+|.+.+.+++|+| ++.+|++|+.||+|+||++....... ....... .+|.+.|.+++|+|++++|++|+.||.|++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v  137 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLT-YDCSSTVTQITMIPNFDAFAVSSKDGQIIV  137 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEE-EECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeee-ccCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence            44567788899999 99999999999999999987522111 1111122 259999999999999999999999999999


Q ss_pred             Eecc---cCeeeceeeccCCCCceEEEeec-CCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          311 WKVI---EHERLDGFDVQDTDPSCLYFTIN-HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       311 Wd~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      ||+.   +++....+..+  .+..+.+.+. ....+..+.... .......+.++.++.+.+|+...    .+++..+.+
T Consensus       138 wd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~  210 (437)
T 3gre_A          138 LKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRMRAFV-NEEKSLLVALTNLSRVIIFDIRT----LERLQIIEN  210 (437)
T ss_dssp             EEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEE-CSSCEEEEEEETTSEEEEEETTT----CCEEEEEEC
T ss_pred             EEeccccCCceeeccccc--eeEEEEccCcccccCceEEEEEE-cCCCCEEEEEeCCCeEEEEeCCC----CeeeEEEcc
Confidence            9995   55444333322  1111111111 111111111000 00122345667788888888765    345777777


Q ss_pred             --cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeC---CCCEEEEEeCCCeEEEEEc
Q 010037          387 --HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV---DDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       387 --h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~---d~~~l~sgs~Dg~V~iwd~  458 (519)
                        |...|++++|+|++ +|++|+.|++|++||+++++++..+  .|...|++++|+|.   ++.+|++|+.||.|+|||+
T Consensus       211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence              89999999999999 9999999999999999999999987  57889999977762   5779999999999999999


Q ss_pred             CCCcEEe-ecc--------------------------CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          459 RRCQVVD-YTD--------------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       459 ~~~~~~~-~~~--------------------------~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ++++.+. +..                          |...|++++|+ ++++|++|+.||.|++||+.+++...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence            9887653 221                          56678999999 88999999999999999999877543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=3.5e-28  Score=245.08  Aligned_cols=245  Identities=14%  Similarity=0.146  Sum_probs=194.4

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      |...+.+++|+|++++|++|+.++.|+||++.....     .....+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            567788899999999999999999999999875431     133467899999999999999999999999999999999


Q ss_pred             ccCeeeceee--ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          314 IEHERLDGFD--VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       314 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      .+++....+.  .+...+.++.|.+...  .+              +.++.++.+.+|+...............+|...|
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l--------------~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i  145 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEK--KF--------------AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  145 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSS--EE--------------EEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCC--EE--------------EEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence            8887554443  3444455555554431  11              2223344555554433221111122335689999


Q ss_pred             eEEEEcCCC-eEEEEeCCCcEEEEEC------------------CCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 010037          392 LDLSWSKNG-FLLSSSADKTVRLWQV------------------GIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG  451 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs~Dg~V~lWdl------------------~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (519)
                      .+++|+|++ +|++++.|+.|++||+                  ..++++..+. |...|++++|+| ++++|++++.|+
T Consensus       146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  224 (372)
T 1k8k_C          146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDS  224 (372)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTT
T ss_pred             eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCC
Confidence            999999999 9999999999999995                  4678888885 899999999999 899999999999


Q ss_pred             eEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          452 KVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       452 ~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .|++||+++++.+ .+..|...|++++|+|++++|++| .||.|++|++.+
T Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          225 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999999988877 567788899999999999988877 899999999988

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.3e-28  Score=249.04  Aligned_cols=260  Identities=14%  Similarity=0.118  Sum_probs=206.3

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC----C---CEEE
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----G---QYLA  300 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g---~~La  300 (519)
                      ...+.+|.+.+.+++|+|  ++|++|+.||.|+||++...... ........+.+|..+|.+++|+|+    +   ++|+
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            344567788889999999  89999999999999999865421 122344567899999999999999    9   9999


Q ss_pred             EEeCCCcEEEEecccCee-----eceeecc-----CCCCceEEEe----ecCCCCeEEeeccCCceeeeeeeccCCCeeE
Q 010037          301 SGGEDGTVRVWKVIEHER-----LDGFDVQ-----DTDPSCLYFT----INHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (519)
Q Consensus       301 Sgs~Dg~I~iWd~~~~~~-----~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  366 (519)
                      +++.||.|++|++.+++.     ...+..+     ...+.++.+.    +....               ..+.++.++.+
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------------~l~~~~~dg~i  150 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH---------------RLVATDVKGTT  150 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE---------------EEEEEETTSCE
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCce---------------EEEEEeCCCcE
Confidence            999999999999998876     6666665     3566666666    33321               02233445566


Q ss_pred             EEeCCcc------cccc-ccceeEe-------eccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec----C-
Q 010037          367 VVLPPKV------FRLL-EKPLHEF-------QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----H-  427 (519)
Q Consensus       367 ~~~~~~~------~~~~-~~~~~~~-------~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~----h-  427 (519)
                      .+|+...      .... ..+...+       ..|...|.+++|+|+++|++++.|+.|++||+++++++..+.    | 
T Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~  230 (397)
T 1sq9_A          151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMI  230 (397)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred             EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence            6666544      2111 1122255       448999999999998888899999999999999999998886    5 


Q ss_pred             --CCcEEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCcEE-eecc-------------CCCceEEEEEeeCCCEEEEE
Q 010037          428 --NNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVV-DYTD-------------IREIVSAVCYCPDGKGGIVG  488 (519)
Q Consensus       428 --~~~V~~v~fsp~d~~~l~sgs~D---g~V~iwd~~~~~~~-~~~~-------------~~~~V~~v~~spdg~~l~sg  488 (519)
                        ...|++++|+| ++.+|++++.|   |.|++||+++++.+ .+..             |...|++++|+|++++|+++
T Consensus       231 ~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          231 NNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence              89999999999 89999999999   99999999998877 4555             88999999999999999999


Q ss_pred             ecCCeEEEEECCCCeeee
Q 010037          489 TMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       489 s~dg~v~iwdl~~~~l~~  506 (519)
                      +.||.|++||+.+++.+.
T Consensus       310 ~~dg~i~iwd~~~~~~~~  327 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERIT  327 (397)
T ss_dssp             ETTSEEEEEETTTTEEEE
T ss_pred             eCCCeEEEEEcCCCceeE
Confidence            999999999999887654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1.2e-28  Score=251.20  Aligned_cols=249  Identities=14%  Similarity=0.192  Sum_probs=199.1

Q ss_pred             eeeEeecccceeecCC----C---CeEEeeecCCeEEEeeCCccccccccccccceeecC-----CCCEEEEEEc----c
Q 010037          231 MARIIDRHGSATLKPG----D---HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-----EGSILTMKFS----L  294 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~----g---~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-----~~~I~~l~fs----p  294 (519)
                      +..|...+.+++|+|+    +   .+|++++.||.|++|++......  .......+..|     ...|.+++|+    |
T Consensus        58 ~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  135 (397)
T 1sq9_A           58 HFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET--KKVIFEKLDLLDSDMKKHSFWALKWGASNDR  135 (397)
T ss_dssp             EECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT--CCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred             EecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc--ccccceeecccccccCCCcEEEEEEeeccCC
Confidence            4456677788999999    9   99999999999999998754421  01113456778     5999999999    9


Q ss_pred             CCCE-EEEEeCCCcEEEEeccc------Ceeec-----eee-------ccCCCCceEEEeecCCCCeEEeeccCCceeee
Q 010037          295 DGQY-LASGGEDGTVRVWKVIE------HERLD-----GFD-------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (519)
Q Consensus       295 dg~~-LaSgs~Dg~I~iWd~~~------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (519)
                      ++++ |++++.||.|++||+.+      ++.+.     .+.       .+...+.++.+.+..                 
T Consensus       136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------  198 (397)
T 1sq9_A          136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-----------------  198 (397)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-----------------
T ss_pred             CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-----------------
Confidence            9999 99999999999999988      65555     442       244455566555433                 


Q ss_pred             eeeccCCCeeEEEeCCccccccccceeEeec---c---CCCeeEEEEcCCC-eEEEEeCC---CcEEEEECCCCeEEEEe
Q 010037          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG---H---SSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVF  425 (519)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~V~~l~~sp~~-~L~sgs~D---g~V~lWdl~~~~~~~~~  425 (519)
                      ..+.++.++.+.+|+...    .+++..+..   |   ...|.+++|+|++ +|++++.|   +.|++||+++++++..+
T Consensus       199 ~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~  274 (397)
T 1sq9_A          199 LIATGFNNGTVQISELST----LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL  274 (397)
T ss_dssp             EEEEECTTSEEEEEETTT----TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             eEEEEeCCCcEEEEECCC----CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccccee
Confidence            223445667777877654    345677788   9   9999999999999 99999999   99999999999988888


Q ss_pred             c--------------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-ec------cC---------------
Q 010037          426 S--------------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT------DI---------------  469 (519)
Q Consensus       426 ~--------------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~------~~---------------  469 (519)
                      .              |...|++++|+| ++++|++++.||.|+|||+++++.+. +.      .|               
T Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (397)
T 1sq9_A          275 SVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  353 (397)
T ss_dssp             CBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             ccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccccc
Confidence            5              889999999999 99999999999999999999998774 44      56               


Q ss_pred             CCceEEEEEeeCC----------CEEEEEecCCeEEEEECCCCe
Q 010037          470 REIVSAVCYCPDG----------KGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       470 ~~~V~~v~~spdg----------~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ...|++++|+|+|          ++|++++.||.|++|++.+++
T Consensus       354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            8999999999999          799999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=1.1e-27  Score=249.79  Aligned_cols=260  Identities=18%  Similarity=0.302  Sum_probs=208.8

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+.+|.+.+.. ++.+++++|++|+.||.|++|++....       ....+.+|.+.|++++|+|++ +|++|+.||+|+
T Consensus       116 ~l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~-------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          116 TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             EEcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCc-------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            34555555432 455577899999999999999987544       234578999999999999988 999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeE-E---------eeccCCce---------------------------
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI-P---------IDVDKEKI---------------------------  352 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~---------------------------  352 (519)
                      +||+.+++....+..+...+.++.+.+......+ .         +.......                           
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            9999999999888888888888887764332222 2         11111110                           


Q ss_pred             ------------eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC
Q 010037          353 ------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID  419 (519)
Q Consensus       353 ------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~  419 (519)
                                  .....+.++.++.+.+|+...    .+++..+.+|...|.+++|+|++ +|++|+.|++|++||++++
T Consensus       267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             cCccceEEEEcCCCCEEEEEeCCCeEEEEECCC----CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence                        001234455566777776653    35577888999999999999999 9999999999999999999


Q ss_pred             eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       420 ~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      +++..+. |...|++++|+   +.+|++|+.||.|++||++++.......+...+..++|+|++++|++|+ ||.|++||
T Consensus       343 ~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          343 ELMYTLQGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             cEEEEEeCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            9999986 99999999996   4799999999999999999988776666778889999999999999998 99999999


Q ss_pred             CCCCeeee
Q 010037          499 IKGMQIFD  506 (519)
Q Consensus       499 l~~~~l~~  506 (519)
                      +.+++++.
T Consensus       419 ~~~g~~~~  426 (464)
T 3v7d_B          419 LRSGKLVH  426 (464)
T ss_dssp             TTTCCEEE
T ss_pred             CCCCcEEe
Confidence            99998875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=8.2e-28  Score=238.49  Aligned_cols=239  Identities=16%  Similarity=0.231  Sum_probs=201.4

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      +...+.+++|+|++++|++++.+|.|++|++......     ....+..|...|.+++|+|++++|++++.||.|++||+
T Consensus        96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A           96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-----EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-----eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            3456677999999999999999999999999865421     22356789999999999999999999999999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .+++....+..+...+.++.+.++...                .+.++.++.+.+|+.....    .+.. ..|...+.+
T Consensus       171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------l~~~~~dg~i~~~d~~~~~----~~~~-~~~~~~v~~  229 (337)
T 1gxr_A          171 HNQTLVRQFQGHTDGASCIDISNDGTK----------------LWTGGLDNTVRSWDLREGR----QLQQ-HDFTSQIFS  229 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSE----------------EEEEETTSEEEEEETTTTE----EEEE-EECSSCEEE
T ss_pred             CCCceeeeeecccCceEEEEECCCCCE----------------EEEEecCCcEEEEECCCCc----eEee-ecCCCceEE
Confidence            999988888777777777776654321                1233456667777765432    2333 347889999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCc
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI  472 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~  472 (519)
                      ++|+|++ +|++++.|+.|++||+.+++......|...|++++|+| ++++|++++.||.|++||+.+++.+....+...
T Consensus       230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  308 (337)
T 1gxr_A          230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS  308 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEecCCCc
Confidence            9999999 99999999999999999998877777999999999999 999999999999999999999998877788999


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          473 VSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      |++++|+|++++|++++.||.|++|++
T Consensus       309 v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          309 VLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            999999999999999999999999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=2.5e-29  Score=254.82  Aligned_cols=242  Identities=11%  Similarity=0.075  Sum_probs=186.2

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~  314 (519)
                      ...+.+++|+|++++|++|+.|+.|+||++.....     .....+.+|.+.|.+++|+|++++|++|+.||.|++||+.
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            45788899999999999999999999999875421     2234577899999999999999999999999999999998


Q ss_pred             cCe---eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec-cCCC
Q 010037          315 EHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSE  390 (519)
Q Consensus       315 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~  390 (519)
                      ++.   ....+..+...+.++.|.++...                .+.++.++.+.+|+...... ......+.+ |...
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~h~~~  148 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDK----------------FAVGSGARVISVCYFEQEND-WWVSKHLKRPLRST  148 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSC----------------CEEEESSSCEEECCC------CCCCEEECSSCCSC
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCE----------------EEEEecCCeEEEEEECCccc-ceeeeEeecccCCC
Confidence            877   44444455555666666554321                22344566677777654321 113556677 9999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECC------------------CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVG------------------IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG  451 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~------------------~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (519)
                      |.+++|+|++ +|++++.|++|++||+.                  .++++..+.|...|++++|+| ++++|++++.||
T Consensus       149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~  227 (377)
T 3dwl_C          149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP-SGNALAYAGHDS  227 (377)
T ss_dssp             EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT-TSSCEEEEETTT
T ss_pred             eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC-CCCEEEEEeCCC
Confidence            9999999999 99999999999999985                  355666668999999999999 999999999999


Q ss_pred             eEEEEEcCCCcE----E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          452 KVRIWEVRRCQV----V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       452 ~V~iwd~~~~~~----~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .|+|||+++++.    + .+..|...|++++|+|+|++|++|+.++.+ +|+..
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            999999999875    3 577899999999999999999998866665 67665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=6.6e-28  Score=245.70  Aligned_cols=257  Identities=18%  Similarity=0.216  Sum_probs=197.3

Q ss_pred             eeeEeecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccc------cceeecCCCCEEEEEEcc-CCCEEEEE
Q 010037          231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYT------GQEFLAHEGSILTMKFSL-DGQYLASG  302 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~------~~~l~~H~~~I~~l~fsp-dg~~LaSg  302 (519)
                      +..|.+.+.+++|+| ++++|++|+.||.|+||++............      .....+|...|.+++|+| ++++|+++
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS  118 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence            455778888999999 9999999999999999999865432211000      001135999999999999 77899999


Q ss_pred             eCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037          303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (519)
Q Consensus       303 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (519)
                      +.||.|++||+.+++....+.. ......+.+.+.....             ...+.++.++.+.+|+...    .+.+.
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~d~~~----~~~~~  180 (408)
T 4a11_B          119 SFDKTLKVWDTNTLQTADVFNF-EETVYSHHMSPVSTKH-------------CLVAVGTRGPKVQLCDLKS----GSCSH  180 (408)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSSCSSC-------------CEEEEEESSSSEEEEESSS----SCCCE
T ss_pred             eCCCeEEEeeCCCCccceeccC-CCceeeeEeecCCCCC-------------cEEEEEcCCCeEEEEeCCC----cceee
Confidence            9999999999999987776653 3334444444433211             1223445566677776654    34567


Q ss_pred             EeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe-EEEEe----------------cCCCcEEEEEEeeCCCCE
Q 010037          383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-CLRVF----------------SHNNYVTSVAFNPVDDNY  443 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~-~~~~~----------------~h~~~V~~v~fsp~d~~~  443 (519)
                      .+.+|...|.+++|+|++  .|++++.|+.|++||++++. ++..+                .|...|++++|+| ++++
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  259 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLH  259 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSE
T ss_pred             eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCE
Confidence            888999999999999998  58999999999999998765 34433                3888999999999 9999


Q ss_pred             EEEEeCCCeEEEEEcCCCcE-----------------------------------------------E-eeccCCCceEE
Q 010037          444 FISGSIDGKVRIWEVRRCQV-----------------------------------------------V-DYTDIREIVSA  475 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~-----------------------------------------------~-~~~~~~~~V~~  475 (519)
                      |++++.||.|++||+++++.                                               + .+..|...|++
T Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~  339 (408)
T 4a11_B          260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC  339 (408)
T ss_dssp             EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEE
Confidence            99999999999999876432                                               1 24568889999


Q ss_pred             EEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          476 VCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       476 v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ++|+|++++|++|+.||.|++||+.+++...
T Consensus       340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          340 CVFQSNFQELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred             EEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence            9999999999999999999999999887653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=6.6e-28  Score=247.36  Aligned_cols=242  Identities=16%  Similarity=0.254  Sum_probs=197.9

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~  314 (519)
                      ...+.+++|+|++.+|++|+.||.|+||++....       ....+.+|...|.+++|  ++++|++|+.||.|++||+.
T Consensus       134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence            3456779999999999999999999999987543       23456789999999999  46799999999999999998


Q ss_pred             -cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          315 -EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       315 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                       .......+..+...+.++.+.++..                ..+.++.++.+.+|+...    .+++..+.+|...|.+
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          205 IANHQIGTLQGHSSEVCGLAWRSDGL----------------QLASGGNDNVVQIWDARS----SIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTC----SSEEEEECCCSSCCCE
T ss_pred             cCcceeeEEcCCCCCeeEEEEcCCCC----------------EEEEEeCCCeEEEccCCC----CCccEEecCCcceEEE
Confidence             4555666666666666776665331                123445566777787664    4556778899999999


Q ss_pred             EEEcCCC--eEEEEe--CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE--eCCCeEEEEEcCCCcEE---
Q 010037          394 LSWSKNG--FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG--SIDGKVRIWEVRRCQVV---  464 (519)
Q Consensus       394 l~~sp~~--~L~sgs--~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg--s~Dg~V~iwd~~~~~~~---  464 (519)
                      ++|+|++  ++++++  .|+.|++||+.+++++..+.+...|++++|+| ++.+|+++  +.||.|+|||+.+++..   
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~  343 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQV  343 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence            9999977  666665  79999999999999999999999999999999 89999984  48999999999987654   


Q ss_pred             eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .+..|...|++++|+|+|++|++++.||.|++|++.+++...
T Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence            366899999999999999999999999999999999887654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-27  Score=244.98  Aligned_cols=252  Identities=10%  Similarity=0.202  Sum_probs=201.8

Q ss_pred             eecccceeecCCCC-eEEee----------ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe
Q 010037          235 IDRHGSATLKPGDH-ELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG  303 (519)
Q Consensus       235 ~~~~~~~~~sp~g~-~lasg----------s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs  303 (519)
                      ...+.+++|+|++. +|++|          +.|+.|+||++......    .... ...|...|.+++|+|++++|++|+
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----~~~~-~~~~~~~v~~~~~s~~~~~l~~~~   86 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----KPIA-SLQVDSKFNDLDWSHNNKIIAGAL   86 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----SCSC-CCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----cEEE-EEecCCceEEEEECCCCCeEEEEc
Confidence            35677899999997 89999          88999999999865422    0111 235889999999999999999999


Q ss_pred             CCCcEEEEeccc----CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc--
Q 010037          304 EDGTVRVWKVIE----HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL--  377 (519)
Q Consensus       304 ~Dg~I~iWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--  377 (519)
                      .||.|++|++.+    .+....+..+...+.++.|.+.....++               .++.++.+.+|+.......  
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~---------------s~~~dg~v~iwd~~~~~~~~~  151 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLA---------------SGGNNGEIFIWDMNKCTESPS  151 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEE---------------EECSSSCEEBCBTTTTSSCTT
T ss_pred             cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEE---------------EEcCCCeEEEEECCCCccccc
Confidence            999999999987    3466677777788888888776333332               3445667777776554310  


Q ss_pred             ---ccceeEeeccCCCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEec-C------CCcEEEEEEeeCCCCEEE
Q 010037          378 ---EKPLHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-H------NNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       378 ---~~~~~~~~~h~~~V~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h------~~~V~~v~fsp~d~~~l~  445 (519)
                         ...+..+.+|...|.+++|+|+ + +|++++.|+.|++||+++++++..+. +      ...|++++|+|.+..+|+
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence               1112334679999999999998 4 99999999999999999999998886 3      789999999994347999


Q ss_pred             EEeCCC---eEEEEEcCCC-cEE-eec-cCCCceEEEEEee-CCCEEEEEecCCeEEEEECCCCeeee
Q 010037          446 SGSIDG---KVRIWEVRRC-QVV-DYT-DIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       446 sgs~Dg---~V~iwd~~~~-~~~-~~~-~~~~~V~~v~~sp-dg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +++.|+   .|++||++++ +.+ .+. .|...|++++|+| ++++|++++.||.|++||+.+++...
T Consensus       232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~  299 (416)
T 2pm9_A          232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS  299 (416)
T ss_dssp             EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE
T ss_pred             EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce
Confidence            999999   9999999986 444 355 6899999999999 99999999999999999998876543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=3.1e-27  Score=238.62  Aligned_cols=213  Identities=23%  Similarity=0.392  Sum_probs=180.4

Q ss_pred             cceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeee
Q 010037          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (519)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (519)
                      ..++.+|.+.|++++|+|++++||||+.||+|+|||..+++....+..+...+.++.|.+....                
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~----------------  120 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA----------------  120 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSE----------------
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCE----------------
Confidence            3568899999999999999999999999999999999999888888877777777777765421                


Q ss_pred             eeccCCCeeEEEeCCcccc--ccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEE
Q 010037          357 SLRKSSDLTCVVLPPKVFR--LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT  432 (519)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~  432 (519)
                      .+.++.++.+.+|+.....  ........+.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+. |...|+
T Consensus       121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~  200 (354)
T 2pbi_B          121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL  200 (354)
T ss_dssp             EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE
Confidence            2344556666666543221  1123456778899999999999999 99999999999999999999998886 999999


Q ss_pred             EEEEeeC-CCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          433 SVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       433 ~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +++|+|. ++++|++|+.||+|++||+++++++ .+..|...|++++|+|++++|++|+.||.|++||+++++..
T Consensus       201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~  275 (354)
T 2pbi_B          201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV  275 (354)
T ss_dssp             EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            9999883 3689999999999999999999877 46789999999999999999999999999999999876543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=5.2e-28  Score=245.91  Aligned_cols=249  Identities=14%  Similarity=0.174  Sum_probs=194.4

Q ss_pred             CCeeeEeecccceeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCC
Q 010037          229 GAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG  306 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg  306 (519)
                      ..+..|...+.+++|+|++ .+|++|+.||.|+||++........     ..+.+|...|.+++|+| ++++|++++.|+
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----IQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----ECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----eecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            3456677888899999999 9999999999999999985443211     12247999999999999 789999999999


Q ss_pred             cEEEEecccCeeeceeeccC---CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          307 TVRVWKVIEHERLDGFDVQD---TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      .|++||+.+ .....+..+.   ..+.++.+.++..                ..+.++.++.+.+|+..     .+++..
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~i~d~~-----~~~~~~  199 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ----------------MLATGDSTGRLLLLGLD-----GHEIFK  199 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT----------------EEEEEETTSEEEEEETT-----SCEEEE
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC----------------EEEEECCCCCEEEEECC-----CCEEEE
Confidence            999999986 3344443332   3345555554332                12344566777777763     567888


Q ss_pred             eeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC----CeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 010037          384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI----DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~----~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd  457 (519)
                      +.+|...|.+++|+|++  +|++++.|++|++||+++    +.++..+.|...|++++|+|.++.+|++++.|+.|++||
T Consensus       200 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd  279 (383)
T 3ei3_B          200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS  279 (383)
T ss_dssp             EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred             eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence            99999999999999998  799999999999999998    778888899999999999997789999999999999999


Q ss_pred             cCCCcEE-eeccC-------C----------CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          458 VRRCQVV-DYTDI-------R----------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       458 ~~~~~~~-~~~~~-------~----------~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +++++.. .+..|       .          ..+..++|+|+|++  +|+.||.|+|||+.+++++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~  344 (383)
T 3ei3_B          280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH  344 (383)
T ss_dssp             TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE
T ss_pred             CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee
Confidence            9987654 22211       2          33445667777766  77789999999999887644

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=3.7e-28  Score=251.60  Aligned_cols=267  Identities=15%  Similarity=0.230  Sum_probs=187.8

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCcccc----ccccccccceeecCC------------CCEEEEEEccCC--
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR----ELSSLYTGQEFLAHE------------GSILTMKFSLDG--  296 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~----~~~~~~~~~~l~~H~------------~~I~~l~fspdg--  296 (519)
                      .+.+.+++|+|+|.+||+|+.||.|+||++.....    ..........+.+|.            +.|.+++|+|++  
T Consensus        28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~  107 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA  107 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence            46777899999999999999999999999886542    111222345678998            899999999998  


Q ss_pred             CEEEEEeCCCcEEEEecccCeeeceeeccCC--------------CCc-------------eEEEeecCCCCeEEeeccC
Q 010037          297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDT--------------DPS-------------CLYFTINHLSQLIPIDVDK  349 (519)
Q Consensus       297 ~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~--------------~~~-------------~~~~~~~~~~~~~~~~~~~  349 (519)
                      .+|++++.||+|++|++.++...........              ...             ...+...+...+..+.+..
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            7999999999999999987554211000000              000             0001112222232322222


Q ss_pred             CceeeeeeeccCCCeeEEEeCCcccccccc----ceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE--
Q 010037          350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEK----PLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC--  421 (519)
Q Consensus       350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~--  421 (519)
                      ...   ..+.+ .++.+.+|+.........    ....+.+|...|.+++|+|++  +|++|+.|++|++||+++++.  
T Consensus       188 ~~~---~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          188 DYE---TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             TSS---EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             CCC---EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            111   11233 577788887763211000    011356899999999999986  999999999999999999886  


Q ss_pred             --EEEec-CCC------------cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-CcEE-eeccCCCc------------
Q 010037          422 --LRVFS-HNN------------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVV-DYTDIREI------------  472 (519)
Q Consensus       422 --~~~~~-h~~------------~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~-~~~~-~~~~~~~~------------  472 (519)
                        +..+. |..            .|++++|+| ++.+|++++. +.|+|||+++ ++.+ .+..|...            
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence              66665 544            899999999 9999999999 9999999997 6655 34444321            


Q ss_pred             ---eEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          473 ---VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       473 ---V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                         +..++|+|+|++|++|+.||.|++||+.+++.+.+
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  379 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL  379 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred             cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee
Confidence               33499999999999999999999999999887653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.7e-28  Score=249.93  Aligned_cols=249  Identities=11%  Similarity=0.208  Sum_probs=200.6

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEe
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWK  312 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~iWd  312 (519)
                      +...+.+++|+|++.+|++|+.||.|+||++......   ......+.+|...|.+++|+|+ +++|++++.||.|++||
T Consensus        66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA---INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred             cCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc---ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence            3456778999999999999999999999999852211   1123456789999999999998 89999999999999999


Q ss_pred             cccCe------eece---eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          313 VIEHE------RLDG---FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       313 ~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      +.+++      ....   +..+...+.++.|.+.....+               +.++.++.+.+|+....    +.+..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l---------------~~~~~dg~v~iwd~~~~----~~~~~  203 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF---------------ASAGSSNFASIWDLKAK----KEVIH  203 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE---------------EEESSSSCEEEEETTTT----EEEEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE---------------EEEcCCCCEEEEECCCC----CcceE
Confidence            98876      2222   234555666777765532222               33455667777776542    33455


Q ss_pred             eecc------CCCeeEEEEcCCC--eEEEEeCCC---cEEEEECCCC-eEEEEec--CCCcEEEEEEeeCCCCEEEEEeC
Q 010037          384 FQGH------SSEVLDLSWSKNG--FLLSSSADK---TVRLWQVGID-RCLRVFS--HNNYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       384 ~~~h------~~~V~~l~~sp~~--~L~sgs~Dg---~V~lWdl~~~-~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~  449 (519)
                      +..|      ...|.+++|+|++  +|++++.|+   .|++||++++ .++..+.  |...|++++|+|.++.+|++++.
T Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  283 (416)
T 2pm9_A          204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR  283 (416)
T ss_dssp             ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred             EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC
Confidence            5554      7899999999997  899999998   9999999986 6666665  89999999999977899999999


Q ss_pred             CCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCCee
Q 010037          450 DGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       450 Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ||.|++||+++++.+ .+..|...|++++|+|++ .+|++++.||.|++||+.+.+.
T Consensus       284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            999999999998877 577889999999999999 8999999999999999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=3.4e-28  Score=244.16  Aligned_cols=240  Identities=15%  Similarity=0.188  Sum_probs=190.9

Q ss_pred             ecccceeecCC----CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEE
Q 010037          236 DRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRV  310 (519)
Q Consensus       236 ~~~~~~~~sp~----g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~i  310 (519)
                      ..+.+++|+|+    +.+|++|+.||.|+||++....       ....+.+|...|.+++|+| ++++|++|+.||.|++
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i  142 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL  142 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            45667899999    6799999999999999987543       2345788999999999999 9999999999999999


Q ss_pred             EecccCeeecee---eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc----------
Q 010037          311 WKVIEHERLDGF---DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL----------  377 (519)
Q Consensus       311 Wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~----------  377 (519)
                      ||+.+++....+   ..+...+.++.|.+...                ..+.++.++.+.+|+.......          
T Consensus       143 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  206 (366)
T 3k26_A          143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE----------------KIMSCGMDHSLKLWRINSKRMMNAIKESYDYN  206 (366)
T ss_dssp             EETTTTEEEEEECSTTSCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEESCSHHHHHHHHHHHTCC
T ss_pred             EEeecCeEEEEecccccccCceeEEEECCCCC----------------EEEEecCCCCEEEEECCCCccccccceeEEec
Confidence            999999887777   45566666666655432                1223344556666665433221          


Q ss_pred             --------------ccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE--------------EEEec-CC
Q 010037          378 --------------EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC--------------LRVFS-HN  428 (519)
Q Consensus       378 --------------~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~--------------~~~~~-h~  428 (519)
                                    ........+|...|.+++|+ ..+|++++.|+.|++||+.+...              +..+. |.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (366)
T 3k26_A          207 PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ  285 (366)
T ss_dssp             GGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred             CCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence                          11233445599999999999 33999999999999999987643              55554 88


Q ss_pred             CcEEEEEEeeCC--CCEEEEEeCCCeEEEEEcCCCcEE-----eeccC--CCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          429 NYVTSVAFNPVD--DNYFISGSIDGKVRIWEVRRCQVV-----DYTDI--REIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       429 ~~V~~v~fsp~d--~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~--~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      ..|++++|+| +  +++|++|+.||.|++||+.+++..     .+..|  ...|++++|+|+|++|++++.||.|++||+
T Consensus       286 ~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          286 CDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             CCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            8999999999 8  999999999999999999987532     45555  789999999999999999999999999998


Q ss_pred             C
Q 010037          500 K  500 (519)
Q Consensus       500 ~  500 (519)
                      .
T Consensus       365 ~  365 (366)
T 3k26_A          365 L  365 (366)
T ss_dssp             -
T ss_pred             c
Confidence            5

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=5.2e-28  Score=243.77  Aligned_cols=250  Identities=12%  Similarity=0.141  Sum_probs=194.5

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +..|...+.+++|+|++++|++|+.||.|++|++......     ....+..|...|.+++|+|++++|++++.||.|++
T Consensus        48 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  122 (372)
T 1k8k_C           48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK-----PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI  122 (372)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-----EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred             ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee-----eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence            4456677888999999999999999999999998654321     11234679999999999999999999999999999


Q ss_pred             EecccCee---ecee-eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc-----------
Q 010037          311 WKVIEHER---LDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-----------  375 (519)
Q Consensus       311 Wd~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-----------  375 (519)
                      ||+..+..   ...+ ..+...+.++.+.+...                ..+.++.++.+.+|+.....           
T Consensus       123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  186 (372)
T 1k8k_C          123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV----------------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWG  186 (372)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSS----------------EEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred             EEecCCCcceeeeeeecccCCCeeEEEEcCCCC----------------EEEEEcCCCCEEEEEcccccccccccccccc
Confidence            99988763   2222 22344455555554321                12234455666677643211           


Q ss_pred             ---ccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 010037          376 ---LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID  450 (519)
Q Consensus       376 ---~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D  450 (519)
                         ...+.+..+.+|...|.+++|+|++ +|++++.|+.|++||+++++++..+. |...|++++|+| ++.+|++| .|
T Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d  264 (372)
T 1k8k_C          187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAG-HD  264 (372)
T ss_dssp             SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEE-TT
T ss_pred             cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec-CCCEEEEE-eC
Confidence               1245677788999999999999999 99999999999999999999998886 888999999999 88888887 89


Q ss_pred             CeEEEEEcCC--CcE---------------------------------------Eee-ccCCCceEEEEEe-eCC---CE
Q 010037          451 GKVRIWEVRR--CQV---------------------------------------VDY-TDIREIVSAVCYC-PDG---KG  484 (519)
Q Consensus       451 g~V~iwd~~~--~~~---------------------------------------~~~-~~~~~~V~~v~~s-pdg---~~  484 (519)
                      +.|++|++++  ++.                                       ... ..|...|++++|. ++|   ++
T Consensus       265 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~  344 (372)
T 1k8k_C          265 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ  344 (372)
T ss_dssp             SSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSE
T ss_pred             CeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceee
Confidence            9999999987  421                                       112 4789999999977 566   99


Q ss_pred             EEEEecCCeEEEEECCCCe
Q 010037          485 GIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       485 l~sgs~dg~v~iwdl~~~~  503 (519)
                      |++|+.||.|++||+.+++
T Consensus       345 l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          345 FCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEETTSEEEEEEHHHHH
T ss_pred             EEEecCCCceEEEEecChh
Confidence            9999999999999997643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=1.9e-27  Score=265.40  Aligned_cols=252  Identities=19%  Similarity=0.248  Sum_probs=214.0

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      ..+.+|.+.+.+++|+|++.+||+|+.+|.|+||++..+.       ..+.+.+|.++|.+++|+|++++|++|+.||.|
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            3467788899999999999999999999999999987543       234578899999999999999999999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      ++||+.+++.+..+..+...+.++.|.+....                .+.++.++.+.+|+....   ......+.+|.
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----------------l~~~~~dg~i~vw~~~~~---~~~~~~~~~~~  140 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY----------------VLSGSDDLTVKLWNWENN---WALEQTFEGHE  140 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSE----------------EEEEETTSEEEEEEGGGT---SEEEEEEECCS
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCE----------------EEEEcCCCEEEEEECCCC---ceEEEEEcCCC
Confidence            99999999998888888888888888765532                223445667777765432   23466788999


Q ss_pred             CCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCcE
Q 010037          389 SEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQV  463 (519)
Q Consensus       389 ~~V~~l~~sp-~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~iwd~~~~~~  463 (519)
                      ..|.+++|+| ++ .|++++.|++|++||+.++.....+.  +...+++++|+|. ++.+|++|+.||.|++||+++++.
T Consensus       141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  220 (814)
T 3mkq_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC  220 (814)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred             CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            9999999999 66 99999999999999999887776664  5588999999983 578999999999999999999887


Q ss_pred             E-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       464 ~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      + .+..|...|++++|+|+|++|++++.||.|++||+.+++...
T Consensus       221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  264 (814)
T 3mkq_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK  264 (814)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            7 466789999999999999999999999999999999876543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=2.9e-27  Score=236.70  Aligned_cols=253  Identities=13%  Similarity=0.164  Sum_probs=197.2

Q ss_pred             eeEeecccceeecCCCCeE-Eeeec---CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC---CCEEEEEeC
Q 010037          232 ARIIDRHGSATLKPGDHEL-TLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE  304 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~~l-asgs~---dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~LaSgs~  304 (519)
                      .+|...+.+++|+|++..+ ++|+.   ||.|+||++.......      ....+|..+|.+++|+|+   +++|++|+.
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~   88 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------LREIEKAKPIKCGTFGATSLQQRYLATGDF   88 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------EEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------eeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence            4567788899999999655 56665   9999999998644321      123479999999999998   699999999


Q ss_pred             CCcEEEEecccCe-eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          305 DGTVRVWKVIEHE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       305 Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      ||.|++||+.+++ ....+..+...+.++.+.+.-       .+.   ......+.++.++.+.+|+.....   .++..
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~s---~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~  155 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL-------GIG---EGAPEIVTGSRDGTVKVWDPRQKD---DPVAN  155 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG-------GCC----CCCEEEEEETTSCEEEECTTSCS---SCSEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeecccc-------ccC---CCccEEEEEeCCCeEEEEeCCCCC---Cccee
Confidence            9999999999887 677777777766666554310       000   001123445667788888876532   24556


Q ss_pred             eeccCC----CeeEEE----EcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeC--CCCEEEEEeCCCe
Q 010037          384 FQGHSS----EVLDLS----WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--DDNYFISGSIDGK  452 (519)
Q Consensus       384 ~~~h~~----~V~~l~----~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~--d~~~l~sgs~Dg~  452 (519)
                      +..|.+    .|.+++    |+|++ +|++++.|+.|++||+++++.+....|...|++++|+|.  ++.+|++|+.||.
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  235 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK  235 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence            655554    899998    67888 999999999999999999999888889999999999995  6889999999999


Q ss_pred             EEEEEcCCCcEE------eeccCCCceEEEEEeeCCC-EEEEEecCCeEEEEECCCCe
Q 010037          453 VRIWEVRRCQVV------DYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       453 V~iwd~~~~~~~------~~~~~~~~V~~v~~spdg~-~l~sgs~dg~v~iwdl~~~~  503 (519)
                      |++||+++++..      ....|...|++++|+|+++ +|++++.||.|++||+..+.
T Consensus       236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            999999876543      2337999999999999998 89999999999999998643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=8.4e-28  Score=240.64  Aligned_cols=248  Identities=13%  Similarity=0.188  Sum_probs=189.3

Q ss_pred             eEeecccceeecCC---CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEE------ccCCCEEEEEe
Q 010037          233 RIIDRHGSATLKPG---DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF------SLDGQYLASGG  303 (519)
Q Consensus       233 ~~~~~~~~~~~sp~---g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f------spdg~~LaSgs  303 (519)
                      .|...+.+++|+|+   +.+|++|+.||.|++|++.....      ....+.+|...|.++.|      +|++++|++++
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~  136 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS  136 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc------cEEEEEecccceEEEeeccccccCCCccEEEEEe
Confidence            35567788999999   69999999999999999985441      23457899999999955      68999999999


Q ss_pred             CCCcEEEEecccCe-eeceeeccCC----CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037          304 EDGTVRVWKVIEHE-RLDGFDVQDT----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (519)
Q Consensus       304 ~Dg~I~iWd~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (519)
                      .||.|++||+.++. ....+..+..    .+.++.+...         +.   ......+.++.++.+.+|+.....   
T Consensus       137 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~---~~~~~l~~~~~d~~i~i~d~~~~~---  201 (357)
T 3i2n_A          137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA---------YN---QEERVVCAGYDNGDIKLFDLRNMA---  201 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC---------CC----CCCEEEEEETTSEEEEEETTTTE---
T ss_pred             CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec---------cC---CCCCEEEEEccCCeEEEEECccCc---
Confidence            99999999999876 4555544333    2223332110         00   011122344556777777766533   


Q ss_pred             cceeEeeccCCCeeEEEEcC---CC-eEEEEeCCCcEEEEECCCCeEEEEe------cCCCcEEEEEEeeCCCC-EEEEE
Q 010037          379 KPLHEFQGHSSEVLDLSWSK---NG-FLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDN-YFISG  447 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp---~~-~L~sgs~Dg~V~lWdl~~~~~~~~~------~h~~~V~~v~fsp~d~~-~l~sg  447 (519)
                        ......|...|.+++|+|   ++ +|++++.|+.|++||+++++++..+      .|...|++++|+| ++. +|++|
T Consensus       202 --~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~  278 (357)
T 3i2n_A          202 --LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTA  278 (357)
T ss_dssp             --EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEE
T ss_pred             --eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEE
Confidence              234567899999999999   77 9999999999999999876654333      4999999999999 777 89999


Q ss_pred             eCCCeEEEEEcCCCc--------------------EEeeccCCCceEEEEEeeCCCEEE-EEecCCeEEEEECCCCee
Q 010037          448 SIDGKVRIWEVRRCQ--------------------VVDYTDIREIVSAVCYCPDGKGGI-VGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       448 s~Dg~V~iwd~~~~~--------------------~~~~~~~~~~V~~v~~spdg~~l~-sgs~dg~v~iwdl~~~~l  504 (519)
                      +.||.|++||++++.                    +..+..|...|++++|+|+|++|+ +++.||.|+|||+.+.++
T Consensus       279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            999999999998632                    225778899999999999999998 799999999999987654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=2.6e-27  Score=245.43  Aligned_cols=258  Identities=17%  Similarity=0.231  Sum_probs=201.7

Q ss_pred             eeeEeecccceeecCC-CCeEEeeecCCeEEEeeCCccccccc---cccccceeecCCCCEEEEEEccCCC-EEEEEeCC
Q 010037          231 MARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGED  305 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~D  305 (519)
                      ...|...+.+++|+|+ +.+||+|+.+|.|+||++........   .......+.+|...|.+|+|+|++. +|++|+.|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            4557778889999997 78999999999999999975321110   1334456789999999999999988 99999999


Q ss_pred             CcEEEEecccCee-------eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037          306 GTVRVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (519)
Q Consensus       306 g~I~iWd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (519)
                      |.|++|++.++..       ...+..+...+.++.|.+.....+               +.++.++.+.+|+.+... ..
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l---------------~s~~~dg~i~i~d~~~~~-~~  267 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF---------------GSVADDQKLMIWDTRNNN-TS  267 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE---------------EEEETTSEEEEEETTCSC-SS
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE---------------EEEeCCCeEEEEECCCCC-CC
Confidence            9999999987432       223334455556666655433222               234456677777776432 12


Q ss_pred             cceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                      +++..+..|...|++++|+|++  +|++|+.|++|++||+++ ..++..+. |...|++++|+|.+..+|++++.|+.|+
T Consensus       268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred             cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence            4567788999999999999988  688999999999999998 56677775 9999999999994346899999999999


Q ss_pred             EEEcCC--------------CcEE-eeccCCCceEEEEEeeCCC-EEEEEecCCeEEEEECCCCee
Q 010037          455 IWEVRR--------------CQVV-DYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       455 iwd~~~--------------~~~~-~~~~~~~~V~~v~~spdg~-~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      |||+..              .+++ ....|...|++++|+|+++ +|++++.||.|+||++....+
T Consensus       348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~  413 (430)
T 2xyi_A          348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY  413 (430)
T ss_dssp             EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred             EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence            999987              2333 5667888999999999999 899999999999999976543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.9e-28  Score=268.02  Aligned_cols=252  Identities=18%  Similarity=0.252  Sum_probs=202.8

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC--CCEEEEEeCCCc
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGT  307 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~  307 (519)
                      .+.+|.+.+.+++|+|++++|++|+.||.|+||++.....     .....+.+|.++|++++|+|+  +++|++|+.||.
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-----~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-----ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            4567888999999999999999999999999999874322     223467899999999999988  999999999999


Q ss_pred             EEEEecccCe--eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          308 VRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       308 I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      |++||+.+++  ....+..+...+.++.+.+......              .+.++.++.+.+|+......  .....+.
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~--------------l~sgs~dg~I~vwdl~~~~~--~~~~~~~  142 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--------------LLVASSDGKVSVVEFKENGT--TSPIIID  142 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--------------EEEEETTSEEEEEECCSSSC--CCCEEEE
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCE--------------EEEEeCCCcEEEEEeecCCC--cceeEee
Confidence            9999999887  5556666667777777766531211              23445666777777654321  2345678


Q ss_pred             ccCCCeeEEEEcCC-------------C-eEEEEeCCCcEEEEECCCC----eEEEEec-CCCcEEEEEEeeCC---CCE
Q 010037          386 GHSSEVLDLSWSKN-------------G-FLLSSSADKTVRLWQVGID----RCLRVFS-HNNYVTSVAFNPVD---DNY  443 (519)
Q Consensus       386 ~h~~~V~~l~~sp~-------------~-~L~sgs~Dg~V~lWdl~~~----~~~~~~~-h~~~V~~v~fsp~d---~~~  443 (519)
                      +|...|.+++|+|.             + .|++|+.||+|++||++++    .++..+. |...|++++|+| +   +.+
T Consensus       143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~~~  221 (753)
T 3jro_A          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSY  221 (753)
T ss_dssp             CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEE
T ss_pred             cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-CCCCCCE
Confidence            89999999999993             6 9999999999999999877    4555554 899999999999 7   899


Q ss_pred             EEEEeCCCeEEEEEcCCCc------EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          444 FISGSIDGKVRIWEVRRCQ------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~------~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      |++|+.||.|++||+++++      ......|...|++++|+|+|++|++|+.||.|++|++.++.
T Consensus       222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9999999999999999863      22455688899999999999999999999999999998543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.1e-28  Score=259.50  Aligned_cols=246  Identities=11%  Similarity=0.025  Sum_probs=174.2

Q ss_pred             cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC------CCEEEEEeCCCcEEEEecccCe
Q 010037          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      +|++..+++++.|++|+||++.......   .....+.+|.+.|++|+|+|+      +.+||+|+.||+|+|||+.++.
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~  246 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA  246 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence            3444455556788999999986543211   112346778899999999996      5799999999999999998764


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE--E
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL--S  395 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~  395 (519)
                      ...........  .......+...+..+.+....    ..+.++.++.+.+|+....   ..+...+.+|...|.++  +
T Consensus       247 ~~~~~~~~~~~--p~~~l~~h~~~v~sv~~s~~~----~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~  317 (524)
T 2j04_B          247 TDVHVFKMCEK--PSLTLSLADSLITTFDFLSPT----TVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTA  317 (524)
T ss_dssp             SSSSEEECCCS--CSEEECCTTTCEEEEEESSSS----EEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEE
T ss_pred             cccccceeecC--ceEEEEcCCCCEEEEEecCCC----eEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEE
Confidence            32100000000  000011122233333332211    3467788899999987643   23556788999999999  5


Q ss_pred             EcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CC--CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccC
Q 010037          396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI  469 (519)
Q Consensus       396 ~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~  469 (519)
                      |+|++  +|+||+.|++|+|||+++++++..+. |.  ..|++|+|+| ++..|++++.|++|++||++++.++ .+.+|
T Consensus       318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH  396 (524)
T 2j04_B          318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSR  396 (524)
T ss_dssp             CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred             cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence            78875  88999999999999999887766553 43  3589999999 8999999999999999999998764 57789


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      ...|++++|+|+|++|++|+.||+|++||+..+
T Consensus       397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          397 ETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             SSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             CCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            999999999999999999999999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=3.7e-27  Score=242.15  Aligned_cols=238  Identities=16%  Similarity=0.163  Sum_probs=195.5

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      ...+++|+|++++|++|+.||.|++|+.......       ..+..| ..+....|+|++++|++|+.||.|++||+.++
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  129 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-------KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN  129 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-------TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccccee-------eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc
Confidence            3456899999999999999999999998754432       123344 44555678999999999999999999999999


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      +....+..+...+.++.|.++..                ..+.++.++.+.+|+...    .+.+..+.+|...|.+++|
T Consensus       130 ~~~~~~~~h~~~v~~~~~~~~~~----------------~l~s~s~d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~~  189 (420)
T 3vl1_A          130 LQREIDQAHVSEITKLKFFPSGE----------------ALISSSQDMQLKIWSVKD----GSNPRTLIGHRATVTDIAI  189 (420)
T ss_dssp             EEEEETTSSSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTT----CCCCEEEECCSSCEEEEEE
T ss_pred             ceeeecccccCccEEEEECCCCC----------------EEEEEeCCCeEEEEeCCC----CcCceEEcCCCCcEEEEEE
Confidence            88777777777777777766532                123445667788887654    3456788999999999999


Q ss_pred             cCCC-eEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEE---------------------eeCCCCEEEEEeCC
Q 010037          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAF---------------------NPVDDNYFISGSID  450 (519)
Q Consensus       397 sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~f---------------------sp~d~~~l~sgs~D  450 (519)
                      +|++ +|++++.|++|++||+++++++..+.    +...|.+++|                     +| ++++|++|+.|
T Consensus       190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  268 (420)
T 3vl1_A          190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVS  268 (420)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETT
T ss_pred             cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCC
Confidence            9999 99999999999999999999998885    5556666665                     56 78899999999


Q ss_pred             CeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCC-EEEEEecCCeEEEEECCCCe
Q 010037          451 GKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       451 g~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~-~l~sgs~dg~v~iwdl~~~~  503 (519)
                      |.|++||+++++.+.  ...|...|++++|+|+++ +|++|+.||.|++||+++++
T Consensus       269 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          269 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             SCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             CeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            999999999987663  345788999999999999 99999999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.4e-27  Score=241.56  Aligned_cols=250  Identities=15%  Similarity=0.276  Sum_probs=194.5

Q ss_pred             EeecccceeecCCCC-eEEeeecCCeEEEeeC----Ccccc-----cccc----ccccceeecCCCCEEEEEEccCCCEE
Q 010037          234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPV----KKQSR-----ELSS----LYTGQEFLAHEGSILTMKFSLDGQYL  299 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~----~~~~~-----~~~~----~~~~~~l~~H~~~I~~l~fspdg~~L  299 (519)
                      |.+.+.+++|+|++. +||+|+.||.|+||++    .....     ....    ........+|.+.|.+++|+|++++|
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  123 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI  123 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred             ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence            447888999999999 9999999999999999    65441     0100    00001122378899999999999999


Q ss_pred             EEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       300 aSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                      ++|+.||.|++|+ .+++....+..+...+.++.|.+....                .+.++.++.+.+|+....    +
T Consensus       124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------l~~~~~d~~i~iwd~~~~----~  182 (425)
T 1r5m_A          124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTH----------------IISMDVENVTILWNVISG----T  182 (425)
T ss_dssp             EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSE----------------EEEEETTCCEEEEETTTT----E
T ss_pred             EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCE----------------EEEEecCCeEEEEECCCC----c
Confidence            9999999999999 667777777777777777777654321                122334556666665432    3


Q ss_pred             ceeEeeccCCC---------------eeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCE
Q 010037          380 PLHEFQGHSSE---------------VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY  443 (519)
Q Consensus       380 ~~~~~~~h~~~---------------V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~  443 (519)
                      .+..+..|...               +.+++|+|++.+++++.|+.|++||+.+++.+..+. |...|++++|+| ++++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  261 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKL  261 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTE
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCE
Confidence            34555555555               999999999999999999999999999998888775 899999999999 8999


Q ss_pred             EEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      |++++.|+.|++||+++++.+ .+..|...|.+++|+|++ +|++++.||.|++||+.+++...
T Consensus       262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  324 (425)
T 1r5m_A          262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA  324 (425)
T ss_dssp             EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE
Confidence            999999999999999998766 466789999999999999 99999999999999999887654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=1.6e-26  Score=248.86  Aligned_cols=249  Identities=18%  Similarity=0.237  Sum_probs=204.6

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCC-EEEEEEcc--CCCEEEEEeCCCcEEE
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSL--DGQYLASGGEDGTVRV  310 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fsp--dg~~LaSgs~Dg~I~i  310 (519)
                      +...+.+++|+|++++|++++ ++.|+||++......   ......+.+|.+. |.+++|+|  ++++||+|+.||.|++
T Consensus        17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV   92 (615)
T ss_dssp             CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred             ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence            456677899999999999998 889999998854111   1234567899999 99999999  9999999999999999


Q ss_pred             EecccC--------eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037          311 WKVIEH--------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (519)
Q Consensus       311 Wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (519)
                      ||+.++        .....+..+...+.++.|.++....+. ....           ....+.+.+|+.      .+.+.
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~-----------~~~~~~v~~~d~------~~~~~  154 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV-VGEG-----------RDNFGVFISWDS------GNSLG  154 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE-EECC-----------SSCSEEEEETTT------CCEEE
T ss_pred             EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE-eccC-----------CCCccEEEEEEC------CCcce
Confidence            999755        556666666777777777665432111 1111           011256666662      34677


Q ss_pred             EeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCC---cEEEEEEeeCC-CCEEEEEeCCCeEEE
Q 010037          383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---YVTSVAFNPVD-DNYFISGSIDGKVRI  455 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~---~V~~v~fsp~d-~~~l~sgs~Dg~V~i  455 (519)
                      .+.+|...|.+++|+|++  .|++++.|+.|++||+.+++++..+. |..   .|++++|+| + +++|++++.||.|++
T Consensus       155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~v  233 (615)
T 1pgu_A          155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISC  233 (615)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEE
T ss_pred             eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEE
Confidence            888999999999999998  79999999999999999999999887 888   899999999 7 999999999999999


Q ss_pred             EEcCCCcEEeec-----cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          456 WEVRRCQVVDYT-----DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       456 wd~~~~~~~~~~-----~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ||+++++.+...     .|...|++++|+ ++++|++++.||.|++||+.+++...
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~  288 (615)
T 1pgu_A          234 FDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ  288 (615)
T ss_dssp             EETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence            999999888654     899999999999 99999999999999999999877544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=7.5e-27  Score=239.50  Aligned_cols=245  Identities=21%  Similarity=0.296  Sum_probs=199.9

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceee-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      +.+.+...++++++..+++++.||.|++|++..+...       ..+. .|...|.+++|+|++++|++|+.||.|++||
T Consensus        90 ~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           90 IIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS-------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             CCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE-------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence            3444444455555677889999999999999765432       1223 3899999999999999999999999999999


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      +.+++.+..+..+...+.++.+..   .               ..+.++.++.+.+|+....   ...+..+.+|...|.
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~~---~---------------~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~  221 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSWNR---H---------------VLSSGSRSGAIHHHDVRIA---NHQIGTLQGHSSEVC  221 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEEET---T---------------EEEEEETTSEEEEEETTSS---SCEEEEEECCSSCEE
T ss_pred             CcCCeEEEEecCCCCceEEEEECC---C---------------EEEEEcCCCCEEEEecccC---cceeeEEcCCCCCee
Confidence            999988888877766666666521   1               2234556677778776532   345777889999999


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe--CCCeEEEEEcCCCcEEeecc
Q 010037          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTD  468 (519)
Q Consensus       393 ~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~  468 (519)
                      +++|+|++ +|++++.|+.|++||+++++++..+. |...|++++|+|.+..++++|+  .|+.|++||+++++.+....
T Consensus       222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~  301 (401)
T 4aez_A          222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD  301 (401)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence            99999999 99999999999999999999988885 9999999999995567777766  79999999999999887777


Q ss_pred             CCCceEEEEEeeCCCEEEEEe--cCCeEEEEECCCCeeee
Q 010037          469 IREIVSAVCYCPDGKGGIVGT--MTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       469 ~~~~V~~v~~spdg~~l~sgs--~dg~v~iwdl~~~~l~~  506 (519)
                      +...|++++|+|++++|++++  .||.|++||+.+++...
T Consensus       302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~  341 (401)
T 4aez_A          302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK  341 (401)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred             CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence            888999999999999999954  89999999998865543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=4.7e-27  Score=274.47  Aligned_cols=245  Identities=21%  Similarity=0.316  Sum_probs=210.2

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +.+|.+.+.+++|+|+++++++|+.||+|+||++.....       ...+.+|.+.|.+++|+|++++|++|+.||.|+|
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-------LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI  683 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-------EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence            456778888999999999999999999999999975442       3457899999999999999999999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ||+.+++.+..+..+...+.++.|.+.....++              +.++.++.+.+|+...    .+.+..+.+|...
T Consensus       684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l--------------~sg~~d~~v~vwd~~~----~~~~~~~~~h~~~  745 (1249)
T 3sfz_A          684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL--------------ATGSNDFFLKLWDLNQ----KECRNTMFGHTNS  745 (1249)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSCCEE--------------EEEETTSCEEEEETTS----SSEEEEECCCSSC
T ss_pred             EECCCCceEEEEcCCCCcEEEEEEecCCCceEE--------------EEEeCCCeEEEEECCC----cchhheecCCCCC
Confidence            999999999999888888888888765433332              3445666777787654    3457778899999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--------------------------------------------
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--------------------------------------------  425 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--------------------------------------------  425 (519)
                      |.+++|+|++ +|++++.|++|++||+.+++....+                                            
T Consensus       746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            9999999999 9999999999999999876554332                                            


Q ss_pred             ------------cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCC
Q 010037          426 ------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTG  492 (519)
Q Consensus       426 ------------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg  492 (519)
                                  .|...|++++|+| ++.++++++.||.|++||+.++..+ .+..|...|++++|+|+|++|++++.||
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg  904 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ  904 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence                        3667889999999 9999999999999999999998877 5788999999999999999999999999


Q ss_pred             eEEEEECCC
Q 010037          493 NCRFYDIKG  501 (519)
Q Consensus       493 ~v~iwdl~~  501 (519)
                      .|++|++.+
T Consensus       905 ~v~vw~~~~  913 (1249)
T 3sfz_A          905 TIRVWETKK  913 (1249)
T ss_dssp             CEEEEEHHH
T ss_pred             eEEEEEccc
Confidence            999999753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=2.5e-27  Score=236.18  Aligned_cols=251  Identities=12%  Similarity=0.102  Sum_probs=195.0

Q ss_pred             eeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC-EEEEEeCCCcEEE
Q 010037          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRV  310 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~I~i  310 (519)
                      ..|.+.+.+++|+|++.+|++|+.||.|+||++.......    ....+.+|...|.+++|+|+++ +|++|+.||.|++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc----cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            3567788899999999999999999999999987544211    1234568999999999999999 9999999999999


Q ss_pred             Eec-ccCeeeceeec--cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc-----cccee
Q 010037          311 WKV-IEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-----EKPLH  382 (519)
Q Consensus       311 Wd~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-----~~~~~  382 (519)
                      |++ .+++. ..+..  +...+.++.+.+  ...+               +.++.++.+.+|+.......     .+++.
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l---------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  145 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG--DDKL---------------IAASWDGLIEVIDPRNYGDGVIAVKNLNSN  145 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET--TTEE---------------EEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC--CCEE---------------EEEcCCCeEEEEcccccccccccccCCeee
Confidence            999 77754 44555  555666666655  2222               23455667777776541100     22344


Q ss_pred             EeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCC-CeE---EEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRC---LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~-~~~---~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      .+. |...|.+++|+|++ |++++.|+.|++||+++ +..   .....|...|++++|+|.++++|++|+.||.|++|++
T Consensus       146 ~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          146 NTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             SSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred             EEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence            444 88999999999987 99999999999999998 443   2333588899999999845789999999999999999


Q ss_pred             CCC------cEE-eeccCCC---------ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          459 RRC------QVV-DYTDIRE---------IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       459 ~~~------~~~-~~~~~~~---------~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +..      +.. .+..|..         .|++++|+|++++|++++.||.|++||+.++++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  287 (342)
T 1yfq_A          224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh
Confidence            875      333 4555544         99999999999999999999999999999887654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=3.9e-27  Score=242.02  Aligned_cols=233  Identities=16%  Similarity=0.201  Sum_probs=186.8

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~  319 (519)
                      ...++|++.+|++|+.||.|+||++.....       ...+.+|.+.|.+++|+|++++|++|+.|+.|++||+.+++..
T Consensus       102 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  174 (420)
T 3vl1_A          102 VDTAKLQMRRFILGTTEGDIKVLDSNFNLQ-------REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP  174 (420)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEECTTSCEE-------EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred             EEEEecCCCEEEEEECCCCEEEEeCCCcce-------eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence            357899999999999999999999874432       2345689999999999999999999999999999999999988


Q ss_pred             ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec-------------
Q 010037          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-------------  386 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-------------  386 (519)
                      ..+..+...+.++.|.++... +               +.++.++.+.+|+....    +.+..+..             
T Consensus       175 ~~~~~h~~~v~~~~~~~~~~~-l---------------~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          175 RTLIGHRATVTDIAIIDRGRN-V---------------LSASLDGTIRLWECGTG----TTIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             EEEECCSSCEEEEEEETTTTE-E---------------EEEETTSCEEEEETTTT----EEEEEECBTTBTTCCEEEEEE
T ss_pred             eEEcCCCCcEEEEEEcCCCCE-E---------------EEEcCCCcEEEeECCCC----ceeEEeecCCCCCCCccEEEE
Confidence            888888888888888765421 1               23344555666655432    22233322             


Q ss_pred             -----------cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCC-EEEEEeCCC
Q 010037          387 -----------HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDN-YFISGSIDG  451 (519)
Q Consensus       387 -----------h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~-~l~sgs~Dg  451 (519)
                                 |...+.+++|+|++ +|++++.|+.|++||+++++.+..+.  |...|++++|+| ++. +|++|+.||
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~g~~dg  313 (420)
T 3vl1_A          235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG-NNANYIYAGYENG  313 (420)
T ss_dssp             EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECS-SCTTEEEEEETTS
T ss_pred             ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeC-CCCCEEEEEeCCC
Confidence                       34667777788999 99999999999999999998887775  788999999999 777 999999999


Q ss_pred             eEEEEEcCCCcE-E-eecc-CCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          452 KVRIWEVRRCQV-V-DYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       452 ~V~iwd~~~~~~-~-~~~~-~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .|++||+++++. + .+.. +...|+++ +.|++++|++++.||.|++|++.+
T Consensus       314 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          314 MLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECC
T ss_pred             eEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccC
Confidence            999999998753 3 4444 66778877 556888999999999999999876

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=1.2e-27  Score=243.21  Aligned_cols=242  Identities=13%  Similarity=0.081  Sum_probs=187.2

Q ss_pred             EeecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          234 IIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       234 ~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      |...+.+++|+| ++.+|++++.|+.|++|++.....  .   ......+|...|.+++|+|++++|++|+.||.|++||
T Consensus       117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  191 (383)
T 3ei3_B          117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI--Q---VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG  191 (383)
T ss_dssp             TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE--E---EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred             cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce--E---EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence            456777899999 789999999999999999984221  1   1111234568999999999999999999999999999


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      + +++.+..+..+...+.++.|.+.....+               +.++.++.+.+|+..........+..+ +|...|.
T Consensus       192 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l---------------~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~  254 (383)
T 3ei3_B          192 L-DGHEIFKEKLHKAKVTHAEFNPRCDWLM---------------ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVN  254 (383)
T ss_dssp             T-TSCEEEEEECSSSCEEEEEECSSCTTEE---------------EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEE
T ss_pred             C-CCCEEEEeccCCCcEEEEEECCCCCCEE---------------EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceE
Confidence            9 5677777777777777777776553222               334556677788776644444455555 7999999


Q ss_pred             EEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEec-C-------C----------CcEEEEEEeeCCCCEEEEEeCCCe
Q 010037          393 DLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-H-------N----------NYVTSVAFNPVDDNYFISGSIDGK  452 (519)
Q Consensus       393 ~l~~sp-~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h-------~----------~~V~~v~fsp~d~~~l~sgs~Dg~  452 (519)
                      +++|+| ++ +|++++.|+.|++||+++++.+..+. |       .          ..+..++|+| ++.+  +|+.|+.
T Consensus       255 ~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~  331 (383)
T 3ei3_B          255 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRT  331 (383)
T ss_dssp             EEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCC
T ss_pred             EEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCe
Confidence            999999 88 99999999999999999876655443 2       2          3444566666 5555  7778999


Q ss_pred             EEEEEcCCCcEEe-ecc--CCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          453 VRIWEVRRCQVVD-YTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       453 V~iwd~~~~~~~~-~~~--~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      |+|||+.+++.+. +..  +...+..++|+|+|++|++|+ ||.|+|||+++
T Consensus       332 i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          332 IDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            9999999998874 433  567788889999999999997 99999999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=6.9e-27  Score=239.62  Aligned_cols=211  Identities=17%  Similarity=0.251  Sum_probs=178.9

Q ss_pred             CeeeEeecccceeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCc
Q 010037          230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGT  307 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~  307 (519)
                      .+.+|...+.+++|+| ++.+|++|+.||.|+||++...............+.+|...|.+++|+|++ ++|++|+.||.
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            4556778888999999 999999999999999999986543222223445788999999999999998 69999999999


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe--e
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--Q  385 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~  385 (519)
                      |++||+.+++..                                                              ..+  .
T Consensus       156 i~iwd~~~~~~~--------------------------------------------------------------~~~~~~  173 (402)
T 2aq5_A          156 ILVWDVGTGAAV--------------------------------------------------------------LTLGPD  173 (402)
T ss_dssp             EEEEETTTTEEE--------------------------------------------------------------EEECTT
T ss_pred             EEEEECCCCCcc--------------------------------------------------------------EEEecC
Confidence            999999876542                                                              233  5


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--cCCCc-EEEEEEeeCCCCEEEEE---eCCCeEEEEEc
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNY-VTSVAFNPVDDNYFISG---SIDGKVRIWEV  458 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~h~~~-V~~v~fsp~d~~~l~sg---s~Dg~V~iwd~  458 (519)
                      +|...|.+++|+|++ +|++++.|+.|++||+++++++..+  .|... +.+++|+| ++.+|++|   +.|+.|++||+
T Consensus       174 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEET
T ss_pred             CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcC
Confidence            688999999999999 9999999999999999999999888  36665 89999999 89999999   78999999999


Q ss_pred             CCCcE---EeeccCCCceEEEEEeeCCCEEEE-EecCCeEEEEECCCCe
Q 010037          459 RRCQV---VDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       459 ~~~~~---~~~~~~~~~V~~v~~spdg~~l~s-gs~dg~v~iwdl~~~~  503 (519)
                      ++.+.   .....+...+.+++|+|++++|++ |+.||.|++||+.+++
T Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          253 KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             TBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             ccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            98654   234467788999999999999875 5579999999999876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=3.5e-27  Score=236.76  Aligned_cols=248  Identities=18%  Similarity=0.226  Sum_probs=196.4

Q ss_pred             eEeecccceeecCC----CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC----CCEEEEEeC
Q 010037          233 RIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQYLASGGE  304 (519)
Q Consensus       233 ~~~~~~~~~~~sp~----g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~LaSgs~  304 (519)
                      +|...+.+++|+|+    ...+++++.++.|+||++...... ..+ .......|...|.+++|+|+    +++|++|+.
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-RLL-QSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-EEE-EEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-Eee-eeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            56778888999994    566777778889999999854321 111 00111237788999999998    679999999


Q ss_pred             CCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe
Q 010037          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (519)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (519)
                      ||.|++||+.+++.+..+..+...+.++.|.+.....+               +.++.++.+.+|+....    +.+..+
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l---------------~s~~~dg~i~iwd~~~~----~~~~~~  154 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL---------------LSVSKDHALRLWNIQTD----TLVAIF  154 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEE---------------EEEETTSCEEEEETTTT----EEEEEE
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEE---------------EEEeCCCeEEEEEeecC----eEEEEe
Confidence            99999999999999888888888888888876332222               23445667777776542    334555


Q ss_pred             ---eccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-----------------------------CCCcE
Q 010037          385 ---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----------------------------HNNYV  431 (519)
Q Consensus       385 ---~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-----------------------------h~~~V  431 (519)
                         .+|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.                             |...|
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  234 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV  234 (366)
T ss_dssp             CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred             cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence               6899999999999999 99999999999999999876543322                             88999


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE--------------E-eeccCCCceEEEEEeeC--CCEEEEEecCCeE
Q 010037          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--------------V-DYTDIREIVSAVCYCPD--GKGGIVGTMTGNC  494 (519)
Q Consensus       432 ~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~--------------~-~~~~~~~~V~~v~~spd--g~~l~sgs~dg~v  494 (519)
                      ++++|+   +++|++++.|+.|++||+++...              + .+..|...|++++|+|+  |++|++|+.||.|
T Consensus       235 ~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i  311 (366)
T 3k26_A          235 DCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL  311 (366)
T ss_dssp             CEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred             EEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence            999998   56999999999999999987642              2 46678889999999999  9999999999999


Q ss_pred             EEEECCCCee
Q 010037          495 RFYDIKGMQI  504 (519)
Q Consensus       495 ~iwdl~~~~l  504 (519)
                      ++||+.+++.
T Consensus       312 ~vwd~~~~~~  321 (366)
T 3k26_A          312 YVWDLEVEDP  321 (366)
T ss_dssp             EEEECCSSSG
T ss_pred             EEEECCCCCC
Confidence            9999998753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.4e-27  Score=247.19  Aligned_cols=251  Identities=10%  Similarity=0.057  Sum_probs=188.3

Q ss_pred             eeEeecccceeecCC------CCeEEeeecCCeEEEeeCCcccccc----ccccccceeecCCCCEEEEEEccCCCEEEE
Q 010037          232 ARIIDRHGSATLKPG------DHELTLGQRMRRVRVHPVKKQSREL----SSLYTGQEFLAHEGSILTMKFSLDGQYLAS  301 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~------g~~lasgs~dg~I~vw~~~~~~~~~----~~~~~~~~l~~H~~~I~~l~fspdg~~LaS  301 (519)
                      .++...+.+++|+|+      +.+||+|+.||+|+||++.......    ........+.+|...|++++|++++ .|++
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las  282 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC  282 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE
Confidence            344566778999997      5799999999999999997543210    0111223678999999999999864 8999


Q ss_pred             EeCCCcEEEEecccCee-eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037          302 GGEDGTVRVWKVIEHER-LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (519)
Q Consensus       302 gs~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (519)
                      |+.||+|++||+.++.. ...+..+...+.++.+......             ....++++.++.+.+|+.+...    .
T Consensus       283 gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g-------------~~~laS~S~D~tvklWD~~~~~----~  345 (524)
T 2j04_B          283 GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE-------------DTVVSTVAVDGYFYIFNPKDIA----T  345 (524)
T ss_dssp             EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS-------------CCEEEEEETTSEEEEECGGGHH----H
T ss_pred             EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC-------------CeEEEEeccCCeEEEEECCCCC----c
Confidence            99999999999987643 3345566665555532111111             0123466778899999876543    3


Q ss_pred             eeEeeccCC--CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          381 LHEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       381 ~~~~~~h~~--~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      ...+.+|..  .|.+++|+|++ .|++++.|++|+|||++++.++..+ .|...|++|+|+| ++.+|++|+.||+|+||
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lw  424 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLAGSADGSLIIT  424 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBCEEEETTTEEECC
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeEEEEECCCEEEEE
Confidence            445566653  58999999998 9999999999999999999887666 4999999999999 99999999999999999


Q ss_pred             EcCCC---------------cE------------------------------EeeccCCCceEEEEEeeCCC---EEEEE
Q 010037          457 EVRRC---------------QV------------------------------VDYTDIREIVSAVCYCPDGK---GGIVG  488 (519)
Q Consensus       457 d~~~~---------------~~------------------------------~~~~~~~~~V~~v~~spdg~---~l~sg  488 (519)
                      |+..+               .+                              ..+.+|...|++++|+|+++   .|++|
T Consensus       425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg  504 (524)
T 2j04_B          425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS  504 (524)
T ss_dssp             BSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred             echHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence            85321               01                              01234667799999999964   89999


Q ss_pred             ecCCeEEEEECCC
Q 010037          489 TMTGNCRFYDIKG  501 (519)
Q Consensus       489 s~dg~v~iwdl~~  501 (519)
                      +.+|.|+||++..
T Consensus       505 ~~~g~vrlw~l~~  517 (524)
T 2j04_B          505 NSAGLLTLEYLSL  517 (524)
T ss_dssp             CTTSEEEEEECSC
T ss_pred             ccCceEEEEEccc
Confidence            9999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=1.4e-27  Score=241.91  Aligned_cols=247  Identities=11%  Similarity=0.079  Sum_probs=177.1

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+..|...+.+++|+|++++|++|+.||.|+||++....    .......+.+|...|.+++|+|++++|++|+.|+.|+
T Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS  125 (377)
T ss_dssp             CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred             EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence            345567788889999999999999999999999998654    1122335678999999999999999999999999999


Q ss_pred             EEecccCee---eceeec-cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc---------
Q 010037          310 VWKVIEHER---LDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL---------  376 (519)
Q Consensus       310 iWd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---------  376 (519)
                      +||+.+++.   ...+.. +...+.++.+.++..  .              .+.++.++.+.+|+......         
T Consensus       126 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~--------------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  189 (377)
T 3dwl_C          126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV--L--------------LAAGCADRKAYVLSAYVRDVDAKPEASVW  189 (377)
T ss_dssp             ECCC-----CCCCEEECSSCCSCEEEEEECTTSS--E--------------EEEEESSSCEEEEEECCSSCC-CCCSCSS
T ss_pred             EEEECCcccceeeeEeecccCCCeEEEEEcCCCC--E--------------EEEEeCCCEEEEEEEEecccCCCcccccc
Confidence            999988773   455555 555666666665432  1              22334455566665432111         


Q ss_pred             -----cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE----EEEec-CCCcEEEEEEeeCCCCEEE
Q 010037          377 -----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC----LRVFS-HNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       377 -----~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~----~~~~~-h~~~V~~v~fsp~d~~~l~  445 (519)
                           ..+++..+ +|...|.+++|+|++ +|++++.|++|++||+.++++    +..+. |...|++++|+| ++.+|+
T Consensus       190 ~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  267 (377)
T 3dwl_C          190 GSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN-ESAIVA  267 (377)
T ss_dssp             CSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE-TTEEEE
T ss_pred             ccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC-CCCEEE
Confidence                 12345555 899999999999999 999999999999999999876    55554 899999999999 899999


Q ss_pred             EEeCCCeEEEEEcCCCc---------------------------------------EE--------------eeccCCCc
Q 010037          446 SGSIDGKVRIWEVRRCQ---------------------------------------VV--------------DYTDIREI  472 (519)
Q Consensus       446 sgs~Dg~V~iwd~~~~~---------------------------------------~~--------------~~~~~~~~  472 (519)
                      +|+.++.+ +|+.....                                       ..              ....|...
T Consensus       268 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~  346 (377)
T 3dwl_C          268 AGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNM  346 (377)
T ss_dssp             EESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSC
T ss_pred             EEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccce
Confidence            98866655 66654211                                       00              01128889


Q ss_pred             eEEEEEeeCC-C---EEEEEecCCeEEEEEC
Q 010037          473 VSAVCYCPDG-K---GGIVGTMTGNCRFYDI  499 (519)
Q Consensus       473 V~~v~~spdg-~---~l~sgs~dg~v~iwdl  499 (519)
                      |+++++.+.. .   .|++|+.||.|+|||+
T Consensus       347 i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          347 IATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             eEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            9999977654 3   5999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.7e-26  Score=256.95  Aligned_cols=117  Identities=15%  Similarity=0.167  Sum_probs=103.2

Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC---------------------------------------------
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---------------------------------------------  419 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~---------------------------------------------  419 (519)
                      +|...|++++|+|++ +|++|+.|++|+|||+.++                                             
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            788999999999999 9999999999999999765                                             


Q ss_pred             eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe------ec-cCCCceEEEEEe-----eCC---C
Q 010037          420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD------YT-DIREIVSAVCYC-----PDG---K  483 (519)
Q Consensus       420 ~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~------~~-~~~~~V~~v~~s-----pdg---~  483 (519)
                      +++.++. |...|++|+|+| ++ +||+|+.|++|+|||+++..++.      +. +|...|++++|+     |||   +
T Consensus       566 ~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~  643 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI  643 (902)
T ss_dssp             EEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred             ceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence            2455665 999999999999 89 99999999999999999887652      22 788899999999     886   8


Q ss_pred             EEEEEecCCeEEEEEC---CCCee
Q 010037          484 GGIVGTMTGNCRFYDI---KGMQI  504 (519)
Q Consensus       484 ~l~sgs~dg~v~iwdl---~~~~l  504 (519)
                      +|++|+.||+|++||+   .+++.
T Consensus       644 ~l~sgs~D~tv~~wd~~p~~~g~~  667 (902)
T 2oaj_A          644 LMVCGTDMGEVITYKILPASGGKF  667 (902)
T ss_dssp             EEEEEETTSEEEEEEEEECGGGCE
T ss_pred             EEEEEecCCcEEEEEEecCCCCcE
Confidence            9999999999999998   55543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=1.5e-26  Score=232.02  Aligned_cols=260  Identities=13%  Similarity=0.170  Sum_probs=182.9

Q ss_pred             CeeeEeecccceeecCC---CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          230 AMARIIDRHGSATLKPG---DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~---g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      .+..|.+.+.+++|+|+   |.+|++|+.||.|+||++......     ....+.+|.+.|.+++|+|++++|++|+.||
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----IPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----EEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----eEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            45667888999999999   699999999999999999852221     1135788999999999999999999999999


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeee-------------------------eeccC
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK-------------------------SLRKS  361 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~s  361 (519)
                      .|++||+.+++... +..+...+.++.|.+......+........+..+.                         .+...
T Consensus       109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVAT  187 (368)
T ss_dssp             EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEE
T ss_pred             cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEe
Confidence            99999999988765 44466667777774433332222211111110000                         01111


Q ss_pred             CCeeEEEeCCccccccccceeE-eeccCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECCCC---eEEEEec-CCC--
Q 010037          362 SDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGID---RCLRVFS-HNN--  429 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~-----~L~sgs~Dg~V~lWdl~~~---~~~~~~~-h~~--  429 (519)
                      .++.+.+|+......   .... ...+...+.++++.++.     .+++++.|+.|++||++..   ..+..+. |..  
T Consensus       188 ~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          188 AERGLIVYQLENQPS---EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             GGGCEEEEECSSSCE---EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             CCCcEEEEEeccccc---hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence            122222222221100   0111 11233445566655544     3999999999999999987   4455554 443  


Q ss_pred             ----------cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          430 ----------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       430 ----------~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                                .|++++|+| ++++|++|+.||.|+|||+++++.+ .+..|...|++++|+|+|++|++++.|+..+.|+
T Consensus       265 ~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             ---CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             ccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence                      799999999 9999999999999999999998877 5677899999999999999999999988655544


Q ss_pred             C
Q 010037          499 I  499 (519)
Q Consensus       499 l  499 (519)
                      +
T Consensus       344 ~  344 (368)
T 3mmy_A          344 F  344 (368)
T ss_dssp             G
T ss_pred             c
Confidence            3

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=3.1e-26  Score=231.52  Aligned_cols=237  Identities=19%  Similarity=0.227  Sum_probs=160.5

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC------CCcEEEEecc
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE------DGTVRVWKVI  314 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~------Dg~I~iWd~~  314 (519)
                      +.+.+++.++ .+..+.....|++...           ...+|+..|++++|+|||++||+|+.      |+.|++|+..
T Consensus        11 ~d~g~~~~~~-~~~g~~~~~~w~~p~~-----------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~   78 (357)
T 4g56_B           11 VDLGTENLYF-QSNGSSKGSAWGRPVT-----------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP   78 (357)
T ss_dssp             -----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC
T ss_pred             CCCCccceEE-ecCCCccccccCCCCC-----------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC
Confidence            4445555443 4445677788886521           13469999999999999999999997      7789999987


Q ss_pred             cCeeecee----eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          315 EHERLDGF----DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       315 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ++.....+    ..+...+.++.|.+..  .               .+.++.++.+.+|+...............+|...
T Consensus        79 ~~~~~~~~~~~~~~~~~~V~~~~~s~d~--~---------------~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~  141 (357)
T 4g56_B           79 EGAPNESLCTAGVQTEAGVTDVAWVSEK--G---------------ILVASDSGAVELWEILEKESLLVNKFAKYEHDDI  141 (357)
T ss_dssp             C---CGGGCSEEEECSSCEEEEEEETTT--E---------------EEEEETTSCEEEC--------CCCCEEECCCSSC
T ss_pred             CCCcceeEecccCCCCCCEEEEEEcCCC--C---------------EEEEECCCEEEEeeccccceeEEEeeccCCCCCC
Confidence            76543332    2344455566665542  1               1234456678888766544333334456689999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe---
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---  465 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~---  465 (519)
                      |++++|+|++ +|++|+.|++|++||+++++++..+. |...|++++|+|....+|++++.||+|+|||+++++...   
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~  221 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID  221 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee
Confidence            9999999999 99999999999999999999999986 999999999999445689999999999999999987663   


Q ss_pred             eccCCCceEEEEEeeCC-CEEEEEecCCeEEEEECCCCeeee
Q 010037          466 YTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg-~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ...+...+++++|+|++ .+|++|+.|+.|++||+++++...
T Consensus       222 ~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~  263 (357)
T 4g56_B          222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ  263 (357)
T ss_dssp             CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE
T ss_pred             eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE
Confidence            44567789999999974 678899999999999999876543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=1.4e-25  Score=225.13  Aligned_cols=204  Identities=23%  Similarity=0.350  Sum_probs=165.8

Q ss_pred             cceeecCCCCEEEEEE-----cc-CCCEEEEEeCCCcEEEEecccCe-------eeceeeccCCCCceEEEeecCCCCeE
Q 010037          277 GQEFLAHEGSILTMKF-----SL-DGQYLASGGEDGTVRVWKVIEHE-------RLDGFDVQDTDPSCLYFTINHLSQLI  343 (519)
Q Consensus       277 ~~~l~~H~~~I~~l~f-----sp-dg~~LaSgs~Dg~I~iWd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (519)
                      ...+.+|.+.|++++|     ++ ++++|+||+.|++|++||+.+.+       ....+..+...+.++.+.+..     
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-----   88 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-----   88 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-----
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-----
Confidence            4568899999999999     77 89999999999999999997543       333444555555555554432     


Q ss_pred             EeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE
Q 010037          344 PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL  422 (519)
Q Consensus       344 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~  422 (519)
                                 ...+.++.++.+.+|+...    .+.+..+.+|...|.+++|+|++ +|++++.|++|++||+......
T Consensus        89 -----------~~l~s~s~D~~v~lwd~~~----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~  153 (343)
T 2xzm_R           89 -----------CFAISSSWDKTLRLWDLRT----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF  153 (343)
T ss_dssp             -----------TEEEEEETTSEEEEEETTS----SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE
T ss_pred             -----------CEEEEEcCCCcEEEEECCC----CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee
Confidence                       1234566788888888765    34577889999999999999999 9999999999999999855444


Q ss_pred             EEe---cCCCcEEEEEEeeCCC----------CEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEe
Q 010037          423 RVF---SHNNYVTSVAFNPVDD----------NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       423 ~~~---~h~~~V~~v~fsp~d~----------~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs  489 (519)
                      ...   .|...|.+++|+| ++          .+|++++.|+.|++||........+..|...|++++|+|+|++|++|+
T Consensus       154 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          154 SSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG  232 (343)
T ss_dssp             ECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence            333   4888999999999 55          799999999999999965544456788999999999999999999999


Q ss_pred             cCCeEEEEECCC
Q 010037          490 MTGNCRFYDIKG  501 (519)
Q Consensus       490 ~dg~v~iwdl~~  501 (519)
                      .||.|++||+.+
T Consensus       233 ~dg~v~iwd~~~  244 (343)
T 2xzm_R          233 KDKKLLIWDILN  244 (343)
T ss_dssp             TTCEEEEEESSC
T ss_pred             CCCeEEEEECCC
Confidence            999999999943

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=8.6e-26  Score=222.07  Aligned_cols=208  Identities=17%  Similarity=0.227  Sum_probs=166.5

Q ss_pred             eeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC--eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeee
Q 010037          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH--ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (519)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (519)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+||++...  +.+..+..+...+.++.|.+.....              .
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~--------------~   69 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT--------------I   69 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCS--------------E
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCC--------------E
Confidence            46789999999999999999999999999999999743  5566677777777777765432111              2


Q ss_pred             eeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCe---EEEEecCCCc
Q 010037          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR---CLRVFSHNNY  430 (519)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~-~L~sgs~Dg~V~lWdl~~~~---~~~~~~h~~~  430 (519)
                      .+.++.++.+.+|+.....  ...+..+.+|...|.+++|+|+  + +|++++.|++|++||++++.   ......|...
T Consensus        70 l~s~s~D~~v~iWd~~~~~--~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~  147 (297)
T 2pm7_B           70 LASCSYDGKVMIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (297)
T ss_dssp             EEEEETTTEEEEEEBSSSC--BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred             EEEEcCCCEEEEEEcCCCc--eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCc
Confidence            3455667788888765321  1345667889999999999997  6 99999999999999998763   2223359999


Q ss_pred             EEEEEEeeC------------CCCEEEEEeCCCeEEEEEcCCCc----EE-eeccCCCceEEEEEeeCC---CEEEEEec
Q 010037          431 VTSVAFNPV------------DDNYFISGSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPDG---KGGIVGTM  490 (519)
Q Consensus       431 V~~v~fsp~------------d~~~l~sgs~Dg~V~iwd~~~~~----~~-~~~~~~~~V~~v~~spdg---~~l~sgs~  490 (519)
                      |++++|+|.            ++++|++|+.|++|+|||+++++    .. .+..|...|++++|+|++   ++|++++.
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~  227 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ  227 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence            999999993            15799999999999999998765    33 577899999999999995   89999999


Q ss_pred             CCeEEEEECCCC
Q 010037          491 TGNCRFYDIKGM  502 (519)
Q Consensus       491 dg~v~iwdl~~~  502 (519)
                      ||.|+|||+.+.
T Consensus       228 D~~v~iWd~~~~  239 (297)
T 2pm7_B          228 DRTCIIWTQDNE  239 (297)
T ss_dssp             TSCEEEEEESST
T ss_pred             CCcEEEEEeCCC
Confidence            999999999764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=9.5e-26  Score=227.74  Aligned_cols=259  Identities=10%  Similarity=0.074  Sum_probs=186.1

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVR  309 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~  309 (519)
                      ...|.+.+.+++|+|+|++|++|+.++ ++||+.......         ...+...+..+++.++++++ ++++.|++|+
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~   84 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH   84 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE---------EEEECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee---------eeeecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence            355778889999999999999998776 789997743321         11222358888999988877 5677889999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecC-----CCCeEEeeccCC-ce-e-------------eeeeec-cCCCeeEEE
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINH-----LSQLIPIDVDKE-KI-D-------------KTKSLR-KSSDLTCVV  368 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~-~-------------~~~~~~-~s~~~~~~~  368 (519)
                      |||+.+++.+..+... ..+..+.+....     ...+..+..... .. .             ....+. +..++.+.+
T Consensus        85 iWd~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           85 IWDDVKKQDVSRIKVD-APVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             EEETTTTEEEEEEECS-SCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             EEECCCCcEEEEEECC-CceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence            9999999988877643 334444443221     111222222221 00 0             011112 567778888


Q ss_pred             eCCccccc-----------cccc-eeEeeccCCCeeEEEEcCCC-eEEEEeCCCc-EEEEECCCCeEEEEec---CCCcE
Q 010037          369 LPPKVFRL-----------LEKP-LHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VRLWQVGIDRCLRVFS---HNNYV  431 (519)
Q Consensus       369 ~~~~~~~~-----------~~~~-~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~-V~lWdl~~~~~~~~~~---h~~~V  431 (519)
                      |+......           ...+ +..+.+|...|.+++|+|++ +|++|+.|++ |+|||+++++++..+.   |...|
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v  243 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADV  243 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence            87764320           0123 67889999999999999999 9999999999 9999999999999996   99999


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe---e---------------------ccCCCceEEEEEeeCCCEEEE
Q 010037          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---Y---------------------TDIREIVSAVCYCPDGKGGIV  487 (519)
Q Consensus       432 ~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~---~---------------------~~~~~~V~~v~~spdg~~l~s  487 (519)
                      ++++|+| ++++|++++.|++|+|||++......   +                     .........++|+|||+.|++
T Consensus       244 ~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~  322 (355)
T 3vu4_A          244 VDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVV  322 (355)
T ss_dssp             EEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEE
T ss_pred             EEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEE
Confidence            9999999 99999999999999999997653211   0                     001122467899999999999


Q ss_pred             EecCCeEEEEECCC
Q 010037          488 GTMTGNCRFYDIKG  501 (519)
Q Consensus       488 gs~dg~v~iwdl~~  501 (519)
                      ++.||.+++|++..
T Consensus       323 ~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          323 WPHTRMIETFKVVF  336 (355)
T ss_dssp             ETTTTEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEc
Confidence            99999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=2.2e-26  Score=238.21  Aligned_cols=246  Identities=14%  Similarity=0.245  Sum_probs=184.3

Q ss_pred             ecccceeecCCC--CeEEeeecCCeEEEeeCCccccccc------------------cc--------------cccce-e
Q 010037          236 DRHGSATLKPGD--HELTLGQRMRRVRVHPVKKQSRELS------------------SL--------------YTGQE-F  280 (519)
Q Consensus       236 ~~~~~~~~sp~g--~~lasgs~dg~I~vw~~~~~~~~~~------------------~~--------------~~~~~-l  280 (519)
                      ..+.+++|+|++  .+|++++.|+.|++|++........                  .+              ..... +
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            678889999998  7999999999999999875332100                  00              00012 3


Q ss_pred             ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc-Ceeece-------eeccCCCCceEEEeecCCCCeEEeeccCCce
Q 010037          281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDG-------FDVQDTDPSCLYFTINHLSQLIPIDVDKEKI  352 (519)
Q Consensus       281 ~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (519)
                      .+|...|++++|+|++++|++| .|+.|++||+.+ +.....       +..+...+.++.|.+.....           
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-----------  241 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT-----------  241 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE-----------
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE-----------
Confidence            5799999999999999999998 799999999984 333332       33445556666665543222           


Q ss_pred             eeeeeeccCCCeeEEEeCCccccccccceeEeeccCC------------CeeEEEEcCCC-eEEEEeCCCcEEEEECCC-
Q 010037          353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS------------EVLDLSWSKNG-FLLSSSADKTVRLWQVGI-  418 (519)
Q Consensus       353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~-  418 (519)
                          .+.++.++.+.+|+..........+..+.+|..            .|.+++|+|++ +|++++. +.|+|||+++ 
T Consensus       242 ----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~  316 (447)
T 3dw8_B          242 ----FVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME  316 (447)
T ss_dssp             ----EEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC
T ss_pred             ----EEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC
Confidence                234456677888887765544444677777776            99999999999 8999988 9999999997 


Q ss_pred             CeEEEEec-CCCc---------------EEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec---------------
Q 010037          419 DRCLRVFS-HNNY---------------VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---------------  467 (519)
Q Consensus       419 ~~~~~~~~-h~~~---------------V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~---------------  467 (519)
                      ++++..+. |...               +..++|+| ++.+|++|+.||.|+|||+.+++.+.+.               
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  395 (447)
T 3dw8_B          317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPR  395 (447)
T ss_dssp             SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCC
T ss_pred             ccccceeeccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCc
Confidence            78777775 4321               33499999 9999999999999999999998876533               


Q ss_pred             ------------------cCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          468 ------------------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       468 ------------------~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                                        .+...|..++|+|+|++||+++.++ +++|..+
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          396 KVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                              2345688999999999999998775 7788654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.3e-25  Score=232.03  Aligned_cols=245  Identities=12%  Similarity=0.081  Sum_probs=185.3

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCcccc--cccccc--------------------------------------
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--ELSSLY--------------------------------------  275 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~--~~~~~~--------------------------------------  275 (519)
                      .++.+++|+|+|++|+++ .++.|++|++..+..  .+..+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            456778999999966655 678999999876551  000000                                      


Q ss_pred             ----------ccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecc--cCeeeceeec--cCCCCceEEEeecCCC
Q 010037          276 ----------TGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVI--EHERLDGFDV--QDTDPSCLYFTINHLS  340 (519)
Q Consensus       276 ----------~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~  340 (519)
                                ......+|.+.|++++|+|++++| ++|+.||.|+|||+.  +++.+..+..  +...+.++.|.++...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                      011123567789999999999996 899999999999998  7877777653  3344556666554321


Q ss_pred             CeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC---C-eEEEEeCCCcEEEEEC
Q 010037          341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQV  416 (519)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~-~L~sgs~Dg~V~lWdl  416 (519)
                        +              +.++.++.+..|+.........+...+.+|...|.+++|+|+   + +|++++.|++|++||+
T Consensus       164 --l--------------~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~  227 (450)
T 2vdu_B          164 --V--------------IIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY  227 (450)
T ss_dssp             --E--------------EEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred             --E--------------EEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence              1              222335556666554433222244567889999999999999   8 9999999999999999


Q ss_pred             CCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec--------------------------c
Q 010037          417 GIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--------------------------D  468 (519)
Q Consensus       417 ~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~--------------------------~  468 (519)
                      .+++++..+  .|...|++++|+  ++.+|++|+.|++|+|||+++++++...                          .
T Consensus       228 ~~~~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (450)
T 2vdu_B          228 PQCFIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI  305 (450)
T ss_dssp             SCTTCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred             CCCceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence            999888774  499999999999  8999999999999999999998876422                          2


Q ss_pred             CCCceEEEEEeeCCCEEEEEe-cCCeEEEEEC
Q 010037          469 IREIVSAVCYCPDGKGGIVGT-MTGNCRFYDI  499 (519)
Q Consensus       469 ~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl  499 (519)
                      ....|.+++|+|++++|++++ .++.|+||++
T Consensus       306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             BCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            235689999999999999999 8999999999

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5e-26  Score=256.78  Aligned_cols=204  Identities=13%  Similarity=0.127  Sum_probs=170.3

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      ...+|...+.+++|+|++.+||+|+.||.|+||+.......        ....|..+|.+|+|+| |++|++++.|++|+
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--------~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~   82 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--------IKLEDRSAIKEMRFVK-GIYLVVINAKDTVY   82 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--------EECSSCCCEEEEEEET-TTEEEEEETTCEEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--------EEcCCCCCEEEEEEcC-CCEEEEEECcCeEE
Confidence            34466778889999999999999999999999997643221        1234788999999999 88999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      |||+.+++++.                                                              .+. |..
T Consensus        83 lWd~~~~~~~~--------------------------------------------------------------~~~-~~~   99 (902)
T 2oaj_A           83 VLSLYSQKVLT--------------------------------------------------------------TVF-VPG   99 (902)
T ss_dssp             EEETTTCSEEE--------------------------------------------------------------EEE-CSS
T ss_pred             EEECCCCcEEE--------------------------------------------------------------EEc-CCC
Confidence            99998765321                                                              222 557


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE-----------Ee-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR-----------VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~-----------~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      .|++++|+|++ +|++|+.||+|++||+.++++..           .+ .|...|++|+|+|.++.+|++|+.||.| +|
T Consensus       100 ~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lW  178 (902)
T 2oaj_A          100 KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TY  178 (902)
T ss_dssp             CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EE
T ss_pred             CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EE
Confidence            89999999999 99999999999999999987641           11 2888999999999546799999999999 99


Q ss_pred             EcCCCcEEe-eccC------------------CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          457 EVRRCQVVD-YTDI------------------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       457 d~~~~~~~~-~~~~------------------~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      |+++++.+. +..+                  ...|++++|+|+|++|++|+.||.|++||+++++++.
T Consensus       179 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          179 SLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             ETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             ECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            999988774 3322                  4679999999999999999999999999999887654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.94  E-value=3e-25  Score=230.06  Aligned_cols=227  Identities=21%  Similarity=0.396  Sum_probs=187.5

Q ss_pred             eecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeece
Q 010037          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG  321 (519)
Q Consensus       242 ~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~  321 (519)
                      ++.++++++++|+.||.|++|+.....       ....+.+|.+.|.+++|  ++++|++|+.||.|++||+.+++....
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~  208 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT  208 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCe-------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            566699999999999999999987543       23457899999999999  788999999999999999999998887


Q ss_pred             eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-
Q 010037          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-  400 (519)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-  400 (519)
                      +..+...+.++.+..   .               ..+.++.++.+.+|+....... .....+.+|...|.+++|  ++ 
T Consensus       209 ~~~h~~~v~~l~~~~---~---------------~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~  267 (435)
T 1p22_A          209 LIHHCEAVLHLRFNN---G---------------MMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDF--DDK  267 (435)
T ss_dssp             ECCCCSCEEEEECCT---T---------------EEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEE--ETT
T ss_pred             EcCCCCcEEEEEEcC---C---------------EEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEe--CCC
Confidence            776665555554421   1               2345556777777776543211 123567889999999999  44 


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY  478 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~  478 (519)
                      +|++|+.|++|++||+++++++..+. |...|.+++|+   ++++++|+.||.|++||+++++.+ .+..|...|++++|
T Consensus       268 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  344 (435)
T 1p22_A          268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF  344 (435)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence            99999999999999999999998887 99999999994   579999999999999999998877 57779999999999


Q ss_pred             eeCCCEEEEEecCCeEEEEECCCCe
Q 010037          479 CPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       479 spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                        ++++|++|+.||.|++||+.+++
T Consensus       345 --~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          345 --DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             --CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             --cCCEEEEEeCCCcEEEEECCCCC
Confidence              78899999999999999987554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=1.6e-25  Score=229.44  Aligned_cols=205  Identities=22%  Similarity=0.347  Sum_probs=173.1

Q ss_pred             ceeecCCCCeEE-eeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCe
Q 010037          240 SATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       240 ~~~~sp~g~~la-sgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      .++++|+...++ +|+.+|.|+||++.......   .....+.+|.+.|++++|+| ++++|++|+.||.|+||++.++.
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            367888876554 47899999999997543321   12335688999999999999 99999999999999999998765


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      .....                                                       ..++..+.+|...|.+++|+
T Consensus       116 ~~~~~-------------------------------------------------------~~~~~~~~~h~~~v~~~~~~  140 (402)
T 2aq5_A          116 LVLPL-------------------------------------------------------REPVITLEGHTKRVGIVAWH  140 (402)
T ss_dssp             CSSCB-------------------------------------------------------CSCSEEEECCSSCEEEEEEC
T ss_pred             Ccccc-------------------------------------------------------CCceEEecCCCCeEEEEEEC
Confidence            32110                                                       13456778999999999999


Q ss_pred             CCC--eEEEEeCCCcEEEEECCCCeEEEEe--c-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-e-ccCC
Q 010037          398 KNG--FLLSSSADKTVRLWQVGIDRCLRVF--S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y-TDIR  470 (519)
Q Consensus       398 p~~--~L~sgs~Dg~V~lWdl~~~~~~~~~--~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~-~~~~  470 (519)
                      |++  +|++++.|++|++||+.+++++..+  . |...|++++|+| ++.+|++++.||.|++||+++++.+. + ..|.
T Consensus       141 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  219 (402)
T 2aq5_A          141 PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE  219 (402)
T ss_dssp             SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCC
Confidence            996  8999999999999999999999988  4 999999999999 99999999999999999999998874 3 4666


Q ss_pred             Cc-eEEEEEeeCCCEEEEE---ecCCeEEEEECCCCe
Q 010037          471 EI-VSAVCYCPDGKGGIVG---TMTGNCRFYDIKGMQ  503 (519)
Q Consensus       471 ~~-V~~v~~spdg~~l~sg---s~dg~v~iwdl~~~~  503 (519)
                      .. +..++|+|+|++|++|   +.||.|++||+.+++
T Consensus       220 ~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          220 GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            55 8999999999999999   789999999998754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.94  E-value=6e-25  Score=218.48  Aligned_cols=224  Identities=20%  Similarity=0.302  Sum_probs=171.9

Q ss_pred             ceeecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEecccCe-----eeceeeccCCCCceEEEeecCCCCeE--------
Q 010037          278 QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHE-----RLDGFDVQDTDPSCLYFTINHLSQLI--------  343 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~iWd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--------  343 (519)
                      .+|+||.+.|++|+|+|+ +++||||+.||+|+|||+.+.+     ....+..+...+.++.|.++....+.        
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~  111 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR  111 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence            468999999999999997 6899999999999999997654     34455666777777777665432111        


Q ss_pred             EeeccCCcee------------------eeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC---eE
Q 010037          344 PIDVDKEKID------------------KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FL  402 (519)
Q Consensus       344 ~~~~~~~~~~------------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~L  402 (519)
                      .+........                  ....+.++.++.+.+|+.....   .....+.+|...+.+++|++++   ++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~  188 (340)
T 4aow_A          112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSNPII  188 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---EEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred             EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc---eEEEEeccccCcccceEEccCCCCcEE
Confidence            1111111100                  0111334455566666553321   2234456799999999999875   78


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeC
Q 010037          403 LSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD  481 (519)
Q Consensus       403 ~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spd  481 (519)
                      ++++.|++|++||+++++++..+. |...|++++|+| ++++|++|+.||.|++||+++.+.+....+...|.+++|+|+
T Consensus       189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  267 (340)
T 4aow_A          189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN  267 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSS
T ss_pred             EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCC
Confidence            899999999999999999998886 999999999999 999999999999999999999999877777889999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCeeee
Q 010037          482 GKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       482 g~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +. +++++.|+.|++||++++.+..
T Consensus       268 ~~-~~~~~~d~~i~iwd~~~~~~~~  291 (340)
T 4aow_A          268 RY-WLCAATGPSIKIWDLEGKIIVD  291 (340)
T ss_dssp             SS-EEEEEETTEEEEEETTTTEEEE
T ss_pred             Cc-eeeccCCCEEEEEECCCCeEEE
Confidence            86 4566679999999999877654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=3.8e-26  Score=233.97  Aligned_cols=242  Identities=13%  Similarity=0.090  Sum_probs=166.6

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--------CCCEEEEEeCCCcEEEE
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--------DGQYLASGGEDGTVRVW  311 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------dg~~LaSgs~Dg~I~iW  311 (519)
                      ...+.+++.+||+|+.|++|+||+........  ......+.+|.+.|++|+|+|        |+++||||+.|++|+||
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~--~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIIT--QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEE--EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccce--eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            35678888999999999999999987654321  122234679999999999998        88999999999999999


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc-------------
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-------------  378 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-------------  378 (519)
                      |+.++.....+..+...+.++.|.+.....+               +.++.++.+.+|+........             
T Consensus       172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l---------------~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQL---------------IVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEETTEEEEE---------------EEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             ECCCCceeeeecCCCCCcEEEEECCCCCceE---------------EecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            9998888777777777777888776543322               234445555555543322110             


Q ss_pred             --------cceeEeeccCCCeeEEEEc-CCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEE--------------
Q 010037          379 --------KPLHEFQGHSSEVLDLSWS-KNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS--------------  433 (519)
Q Consensus       379 --------~~~~~~~~h~~~V~~l~~s-p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~--------------  433 (519)
                              .......+|...|.++.|+ |++ .|++++.|+++++||+.+++....+. |...+..              
T Consensus       237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T 4gq1_A          237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP  316 (393)
T ss_dssp             EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred             EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence                    1122345788999999997 677 99999999999999998877655543 3333333              


Q ss_pred             ----EEEeeC-CCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          434 ----VAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       434 ----v~fsp~-d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                          ..|+|. ++.++++|+.||+|+|||+.+++.+ ....|...|++++|+|||++||+++.+| +.+|.+
T Consensus       317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence                233332 3446677889999999999988766 4677888999999999999999998765 566655

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.94  E-value=2e-24  Score=224.32  Aligned_cols=237  Identities=21%  Similarity=0.361  Sum_probs=195.3

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +.+|.+.+.. ++++++++|++|+.||.|++|++.....       ...+.+|.+.|+++.|+  +++|++|+.||+|++
T Consensus       114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v  183 (445)
T 2ovr_B          114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-------LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV  183 (445)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-------EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE-------EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence            4455554432 5777899999999999999999875442       24577899999999997  669999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ||+.+++....+..+...+.++.+..                  ...+.++.++.+.+|+...    .+.+..+.+|...
T Consensus       184 wd~~~~~~~~~~~~h~~~v~~~~~~~------------------~~l~s~s~dg~i~~wd~~~----~~~~~~~~~~~~~  241 (445)
T 2ovr_B          184 WNAETGECIHTLYGHTSTVRCMHLHE------------------KRVVSGSRDATLRVWDIET----GQCLHVLMGHVAA  241 (445)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEET------------------TEEEEEETTSEEEEEESSS----CCEEEEEECCSSC
T ss_pred             EECCcCcEEEEECCCCCcEEEEEecC------------------CEEEEEeCCCEEEEEECCC----CcEEEEEcCCccc
Confidence            99999998888877766666655521                  1134556677888887664    3557788899999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eec
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYT  467 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~  467 (519)
                      |.+++|  ++ +|++++.|+.|++||+++++++..+. |...|++++|   ++.++++|+.||.|++||+++++.+ .+.
T Consensus       242 v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  316 (445)
T 2ovr_B          242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLT  316 (445)
T ss_dssp             EEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEc
Confidence            999999  45 99999999999999999999999886 8999999999   6789999999999999999999877 467


Q ss_pred             cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       468 ~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .|...+.++.+  ++++|++|+.||.|++||+.+++...
T Consensus       317 ~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~  353 (445)
T 2ovr_B          317 GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQ  353 (445)
T ss_dssp             CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            78888887776  57799999999999999998876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.94  E-value=1e-24  Score=234.78  Aligned_cols=250  Identities=17%  Similarity=0.257  Sum_probs=201.8

Q ss_pred             eeEeec-ccceeecC--CCCeEEeeecCCeEEEeeCCccccc-cccccccceeecCCCCEEEEEEccCCCEEEEEeCC--
Q 010037          232 ARIIDR-HGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--  305 (519)
Q Consensus       232 ~~~~~~-~~~~~~sp--~g~~lasgs~dg~I~vw~~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D--  305 (519)
                      ..|... +.+++|+|  ++++|++|+.||.|+||++...... .........+.+|..+|.+++|+|++++|++++.+  
T Consensus        60 ~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  139 (615)
T 1pgu_A           60 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD  139 (615)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred             ecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC
Confidence            445566 78899999  9999999999999999999643100 00112234677899999999999999999999988  


Q ss_pred             --CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          306 --GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       306 --g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                        +.|++||  .++....+..+...+.++.|.+.....+               +.++.++.+.+|+....    +.+..
T Consensus       140 ~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l---------------~~~~~d~~v~vwd~~~~----~~~~~  198 (615)
T 1pgu_A          140 NFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRS---------------MTVGDDGSVVFYQGPPF----KFSAS  198 (615)
T ss_dssp             CSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEE---------------EEEETTTEEEEEETTTB----EEEEE
T ss_pred             CccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEE---------------EEEeCCCcEEEEeCCCc----ceeee
Confidence              6888888  5666667777777777777766553222               33455667777775543    44677


Q ss_pred             eeccCC---CeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEe-----cCCCcEEEEEEeeCCCCEEEEEeCCCeE
Q 010037          384 FQGHSS---EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-----SHNNYVTSVAFNPVDDNYFISGSIDGKV  453 (519)
Q Consensus       384 ~~~h~~---~V~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~~~~~~~-----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (519)
                      +.+|..   .|.+++|+|+ + +|++++.|+.|++||+.+++++..+     .|...|++++|+  ++.+|++++.|+.|
T Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i  276 (615)
T 1pgu_A          199 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATI  276 (615)
T ss_dssp             ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEE
T ss_pred             ecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcE
Confidence            888999   9999999999 8 9999999999999999999999999     799999999999  78999999999999


Q ss_pred             EEEEcCCCcEEe-eccC----CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          454 RIWEVRRCQVVD-YTDI----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       454 ~iwd~~~~~~~~-~~~~----~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ++||+++++.+. +..+    ...+.++.|. +++++++++.||.|++||+.+++..
T Consensus       277 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~  332 (615)
T 1pgu_A          277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVL  332 (615)
T ss_dssp             EEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEE
Confidence            999999988774 3333    3678888885 8999999999999999999876554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=1.7e-25  Score=222.02  Aligned_cols=205  Identities=17%  Similarity=0.217  Sum_probs=161.0

Q ss_pred             eeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe--eeceeeccCCCCceEEEeecC-CCCeEEeeccCCceeee
Q 010037          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINH-LSQLIPIDVDKEKIDKT  355 (519)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  355 (519)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.  .+..+..+...+.++.|.+.. ...              
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~--------------   73 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNI--------------   73 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSC--------------
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCE--------------
Confidence            457899999999999999999999999999999998775  345666777777777765431 222              


Q ss_pred             eeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeEE---EEe-cCC
Q 010037          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCL---RVF-SHN  428 (519)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~-~L~sgs~Dg~V~lWdl~~~~~~---~~~-~h~  428 (519)
                       .+.++.++.+.+|+.....  ......+.+|...|.+++|+|+  + +|++|+.|++|++||++.+...   ..+ .|.
T Consensus        74 -l~s~s~D~~v~iWd~~~~~--~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~  150 (316)
T 3bg1_A           74 -LASCSYDRKVIIWREENGT--WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT  150 (316)
T ss_dssp             -EEEEETTSCEEEECCSSSC--CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS
T ss_pred             -EEEEECCCEEEEEECCCCc--ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc
Confidence             2345667788888875421  1345677899999999999997  6 8999999999999999876322   222 388


Q ss_pred             CcEEEEEEeeCC-----------------CCEEEEEeCCCeEEEEEcCCC---cEE-eeccCCCceEEEEEeeCC----C
Q 010037          429 NYVTSVAFNPVD-----------------DNYFISGSIDGKVRIWEVRRC---QVV-DYTDIREIVSAVCYCPDG----K  483 (519)
Q Consensus       429 ~~V~~v~fsp~d-----------------~~~l~sgs~Dg~V~iwd~~~~---~~~-~~~~~~~~V~~v~~spdg----~  483 (519)
                      ..|++++|+| +                 +.+|++|+.|++|+|||++..   +.+ .+..|...|++++|+|++    +
T Consensus       151 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~  229 (316)
T 3bg1_A          151 IGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS  229 (316)
T ss_dssp             SCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred             CCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence            8999999999 5                 478999999999999999864   233 577899999999999987    8


Q ss_pred             EEEEEecCCeEEEEECCC
Q 010037          484 GGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       484 ~l~sgs~dg~v~iwdl~~  501 (519)
                      +|++|+.||+|+||++.+
T Consensus       230 ~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          230 TIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             EEEEEETTCEEEEEECSS
T ss_pred             eEEEEcCCCeEEEEEccC
Confidence            899999999999999876

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.3e-25  Score=230.41  Aligned_cols=244  Identities=9%  Similarity=0.153  Sum_probs=188.2

Q ss_pred             eEeecccceeecCCCCeEEeeecCCeEEEeeCCc---ccccc-ccccccceee--c--CCCCEEEEE--EccCCCEEEEE
Q 010037          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK---QSREL-SSLYTGQEFL--A--HEGSILTMK--FSLDGQYLASG  302 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~---~~~~~-~~~~~~~~l~--~--H~~~I~~l~--fspdg~~LaSg  302 (519)
                      .|...+.+++|+|++.+|++|+.||.|++|++..   ..... ........+.  .  |...+.++.  +++++.+|++|
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            3567788899999999999999999999999852   11110 0001111121  2  567788888  56889999999


Q ss_pred             eCCCcEEEEecccCeeeceeec--cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037          303 GEDGTVRVWKVIEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (519)
Q Consensus       303 s~Dg~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (519)
                      +.||.|++||+.+++.+..+..  +...+.++.+.+...                ..+.++.++.+.+|+.+.    .++
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~----------------~l~s~~~dg~i~iwd~~~----~~~  248 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC----------------VLILGTTRGIIDIWDIRF----NVL  248 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC----------------EEEEEETTSCEEEEETTT----TEE
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC----------------EEEEEcCCCeEEEEEcCC----ccE
Confidence            9999999999999998888876  566666776655421                223456677788887764    344


Q ss_pred             eeEee-ccCCCeeEEEEcC----CC-eEEEEeCCCcEEEEECCCCeEEEEec---------------------------C
Q 010037          381 LHEFQ-GHSSEVLDLSWSK----NG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------------------H  427 (519)
Q Consensus       381 ~~~~~-~h~~~V~~l~~sp----~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---------------------------h  427 (519)
                      +..+. .|...|.+++|+|    ++ +|++++.|++|++||+++++++..+.                           |
T Consensus       249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (437)
T 3gre_A          249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS  328 (437)
T ss_dssp             EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred             EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence            56665 7888999996665    56 99999999999999999999888775                           5


Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-ecc-------------------------------------C
Q 010037          428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTD-------------------------------------I  469 (519)
Q Consensus       428 ~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~-------------------------------------~  469 (519)
                      ...|++++|++  +++|++|+.|+.|++||+.+++... +..                                     |
T Consensus       329 ~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  406 (437)
T 3gre_A          329 LNALSTISVSN--DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH  406 (437)
T ss_dssp             GGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred             CCceEEEEECC--ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence            56688999984  6899999999999999999876442 222                                     8


Q ss_pred             CCceEEEEEeeC--CCEEEEEecCCeEEEEE
Q 010037          470 REIVSAVCYCPD--GKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       470 ~~~V~~v~~spd--g~~l~sgs~dg~v~iwd  498 (519)
                      ...|++++|+++  +.+|++|+.||.|+||+
T Consensus       407 ~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          407 HDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            899999999998  78999999999999995

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3e-25  Score=222.62  Aligned_cols=201  Identities=12%  Similarity=0.081  Sum_probs=155.6

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccc--ccccccccee-ecCCCCEEEEEEcc--CCCEEEEEeCCCcEEE
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--LSSLYTGQEF-LAHEGSILTMKFSL--DGQYLASGGEDGTVRV  310 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~--~~~~~~~~~l-~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I~i  310 (519)
                      ..+.++.++|+   +++|+.|++|++|+.......  .......+.+ .+|.+.|.+++|+|  ++++|++|+.||+|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            55667889998   999999999999988743211  1111111122 26778999999999  9999999999999999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ||+.+++.....                                                             ...|...
T Consensus       154 wd~~~~~~~~~~-------------------------------------------------------------~~~~~~~  172 (343)
T 3lrv_A          154 QSYEDDSQYIVH-------------------------------------------------------------SAKSDVE  172 (343)
T ss_dssp             EESSSSCEEEEE-------------------------------------------------------------CCCSSCC
T ss_pred             EECCCCcEEEEE-------------------------------------------------------------ecCCCCc
Confidence            999877642111                                                             1224557


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE-EEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL-RVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-  465 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~-~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-  465 (519)
                      |.+++|+|++ +|++|+.|+.|+|||+++++.+ ..+.  |...|++++|+| ++.+|++++ |+.|+|||+++.+.+. 
T Consensus       173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~  250 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLA  250 (343)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCccee
Confidence            9999999999 9999999999999999999877 5564  899999999999 999999999 5599999999886652 


Q ss_pred             ec---cCCCce--EEEEEeeCCCEEEEEec-CCeEEEEECCCC
Q 010037          466 YT---DIREIV--SAVCYCPDGKGGIVGTM-TGNCRFYDIKGM  502 (519)
Q Consensus       466 ~~---~~~~~V--~~v~~spdg~~l~sgs~-dg~v~iwdl~~~  502 (519)
                      +.   .+...+  .+++|+|+|++|++++. |+.|+||++.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          251 YPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             SCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            21   122333  46999999999999998 999999998543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=8.2e-25  Score=221.82  Aligned_cols=202  Identities=13%  Similarity=0.147  Sum_probs=148.9

Q ss_pred             ccceeecCCCCeEEe--eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          238 HGSATLKPGDHELTL--GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       238 ~~~~~~sp~g~~las--gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      +.+++|+|||+++++  ++.|++|+|||+......       ..+ .|.+.|++|+|+|||++|++++.| .+++|+..+
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~-------~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~  206 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK-------FEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVT  206 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE-------EEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTT
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE-------EEe-CCCCceEEEEEccCCceEEeccce-eEEEEEecc
Confidence            456899999999865  557899999998854432       223 478899999999999999999865 566777766


Q ss_pred             Ceeecee--eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          316 HERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       316 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      +......  ..+...+..+.|.++....+.. ..+           ......+..|+.............+.+|...|++
T Consensus       207 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~-s~d-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~  274 (365)
T 4h5i_A          207 GSCIARKTDFDKNWSLSKINFIADDTVLIAA-SLK-----------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS  274 (365)
T ss_dssp             CCEEEEECCCCTTEEEEEEEEEETTEEEEEE-EES-----------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred             CcceeeeecCCCCCCEEEEEEcCCCCEEEEE-ecC-----------CcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence            6654332  2233345566666654322221 111           1112233444433322222335667889999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-c-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      ++|+|+| +|++|+.|++|+|||+.+++++..+ . |...|++|+|+| ++++||+||.|++|+|||+...
T Consensus       275 ~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          275 MDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred             EEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999 9999999999999999999999886 3 999999999999 9999999999999999999653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=7.2e-25  Score=215.50  Aligned_cols=177  Identities=12%  Similarity=0.134  Sum_probs=130.7

Q ss_pred             cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCce
Q 010037          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC  331 (519)
Q Consensus       255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~  331 (519)
                      .|+.|++|++....+.      ...+.+|...+..++|++   ++.+||+|+.|++|+|||+.+++++..+..+..    
T Consensus       155 ~d~~V~~~~~s~dG~~------~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~----  224 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGG------KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS----  224 (356)
T ss_dssp             TTCEEEEEEECTTSCE------EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----
T ss_pred             CCCcEEEEEECCCCce------eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc----
Confidence            4788888887432211      124568888899999999   779999999999999999999987666542211    


Q ss_pred             EEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-e---------
Q 010037          332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F---------  401 (519)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~---------  401 (519)
                                                                             |...+.+++|+|++ +         
T Consensus       225 -------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~~~  249 (356)
T 2w18_A          225 -------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHPCA  249 (356)
T ss_dssp             ---------------------------------------------------------CCCEEEEEEETTEEEEEEC----
T ss_pred             -------------------------------------------------------ceeeeEEEEECCCCCEEEEeccCCC
Confidence                                                                   11245555666665 3         


Q ss_pred             ---EEEEeCCCcEEEEECCCCeEEEEe------cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCC
Q 010037          402 ---LLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIRE  471 (519)
Q Consensus       402 ---L~sgs~Dg~V~lWdl~~~~~~~~~------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~  471 (519)
                         +++|+.|++|++||..+++++.++      .|...+.+..+   ++.++++|+.|++|+|||+.+++++. +.+|..
T Consensus       250 ~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~  326 (356)
T 2w18_A          250 KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD  326 (356)
T ss_dssp             --------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--
T ss_pred             cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC
Confidence               477899999999999999988776      25444444333   47899999999999999999999885 556766


Q ss_pred             ceE-EEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          472 IVS-AVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       472 ~V~-~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      .+. .++|+|||++|++|+.|++|+|||+
T Consensus       327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            554 6899999999999999999999995

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=1.2e-24  Score=216.69  Aligned_cols=233  Identities=12%  Similarity=0.060  Sum_probs=185.6

Q ss_pred             eEeecccceeecCCCC-eEEeeecCCeEEEeeC-Cccccccccccccceeec--CCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          233 RIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPV-KKQSRELSSLYTGQEFLA--HEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~-~lasgs~dg~I~vw~~-~~~~~~~~~~~~~~~l~~--H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      .|...+.+++|+|++. +|++|+.||.|++|++ .....        ..+.+  |...|.+++|+| +++|++++.|+.|
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i  124 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--------QALTNNEANLGICRICKYG-DDKLIAASWDGLI  124 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE--------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEE
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce--------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeE
Confidence            5566778899999999 9999999999999998 65432        35677  999999999999 9999999999999


Q ss_pred             EEEeccc---------CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc-ccccc
Q 010037          309 RVWKVIE---------HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLLE  378 (519)
Q Consensus       309 ~iWd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~  378 (519)
                      ++||+.+         ++.+..+. +...+.++.+.+..                  .+.++.++.+.+|+... ...  
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~------------------l~~~~~d~~i~i~d~~~~~~~--  183 (342)
T 1yfq_A          125 EVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR------------------LIVGMNNSQVQWFRLPLCEDD--  183 (342)
T ss_dssp             EEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE------------------EEEEESTTEEEEEESSCCTTC--
T ss_pred             EEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc------------------EEEEeCCCeEEEEECCccccc--
Confidence            9999987         66555554 34444444443221                  23345566677776654 221  


Q ss_pred             cceeEeeccCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCC------eEEEEec-CCC---------cEEEEEEeeCC
Q 010037          379 KPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGID------RCLRVFS-HNN---------YVTSVAFNPVD  440 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp-~~-~L~sgs~Dg~V~lWdl~~~------~~~~~~~-h~~---------~V~~v~fsp~d  440 (519)
                      ........|...|.+++|+| ++ +|++++.|+.|++|++...      +.+..+. |..         .|++++|+| +
T Consensus       184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~  262 (342)
T 1yfq_A          184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-R  262 (342)
T ss_dssp             CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-T
T ss_pred             cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-C
Confidence            12334456888999999999 88 9999999999999999876      6666665 544         999999999 9


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCcEE-eeccC-CCceEEEEEeeCCCEEEEEecCCe-EEEEE
Q 010037          441 DNYFISGSIDGKVRIWEVRRCQVV-DYTDI-REIVSAVCYCPDGKGGIVGTMTGN-CRFYD  498 (519)
Q Consensus       441 ~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~-~~~V~~v~~spdg~~l~sgs~dg~-v~iwd  498 (519)
                      +++|++|+.||.|++||+.+++.+ .+..| ...|++++  |+|++|++++.||. .+.|.
T Consensus       263 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            999999999999999999999877 46667 89999999  99999999999998 55444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.93  E-value=2.4e-24  Score=240.33  Aligned_cols=245  Identities=19%  Similarity=0.279  Sum_probs=199.6

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +..|...+.+++|+|++++|++|+.||.|+||++....       ....+.+|.+.|++++|+|++++|++++.||.|++
T Consensus        51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  123 (814)
T 3mkq_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL  123 (814)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence            34456678889999999999999999999999987543       23457889999999999999999999999999999


Q ss_pred             EecccC-eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc-C
Q 010037          311 WKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-S  388 (519)
Q Consensus       311 Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~  388 (519)
                      |++.++ .....+..+...+.++.|.+....               ..+.++.++.+.+|+...    ..+...+..| .
T Consensus       124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---------------~l~~~~~dg~v~vwd~~~----~~~~~~~~~~~~  184 (814)
T 3mkq_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPS---------------TFASGCLDRTVKVWSLGQ----STPNFTLTTGQE  184 (814)
T ss_dssp             EEGGGTSEEEEEEECCSSCEEEEEEETTEEE---------------EEEEEETTSEEEEEETTC----SSCSEEEECCCT
T ss_pred             EECCCCceEEEEEcCCCCcEEEEEEEcCCCC---------------EEEEEeCCCeEEEEECCC----CcceeEEecCCC
Confidence            999887 566666667777777777652211               223455566777777643    2334445544 4


Q ss_pred             CCeeEEEEcC--CC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          389 SEVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       389 ~~V~~l~~sp--~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      ..+.+++|+|  ++ +|++++.|+.|++||+.+++++..+. |...|++++|+| ++.+|++++.||.|++||+.+++.+
T Consensus       185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVE  263 (814)
T ss_dssp             TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            8999999999  77 99999999999999999999998887 899999999999 9999999999999999999998877


Q ss_pred             -eeccCCCceEEEEEeeCCCE-EEEEecCCeEEEEECCCC
Q 010037          465 -DYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       465 -~~~~~~~~V~~v~~spdg~~-l~sgs~dg~v~iwdl~~~  502 (519)
                       .+..+...+.+++|+|+|.. +++++.++.+.+|++...
T Consensus       264 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          264 KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             EEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred             EEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence             46777889999999999974 355555778899998643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.93  E-value=1.4e-24  Score=224.90  Aligned_cols=234  Identities=19%  Similarity=0.341  Sum_probs=183.4

Q ss_pred             eEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      +|...+.+++|  ++.+|++|+.||.|++|++.....       ...+.+|...|.+++|+  +.+|++|+.||.|++||
T Consensus       171 ~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~-------~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd  239 (435)
T 1p22_A          171 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM-------LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWD  239 (435)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE-------EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE-------EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEe
Confidence            45556666666  889999999999999999985442       34577899999999997  45999999999999999


Q ss_pred             cccCeee---ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          313 VIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       313 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +.++...   ..+..+...+.++.+             .     ....+.++.++.+.+|+...    .+.+..+.+|..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~-------------~-----~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~  297 (435)
T 1p22_A          240 MASPTDITLRRVLVGHRAAVNVVDF-------------D-----DKYIVSASGDRTIKVWNTST----CEFVRTLNGHKR  297 (435)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEE-------------E-----TTEEEEEETTSEEEEEETTT----CCEEEEEECCSS
T ss_pred             CCCCCCceeeeEecCCCCcEEEEEe-------------C-----CCEEEEEeCCCeEEEEECCc----CcEEEEEcCCCC
Confidence            9887654   233333333333333             1     11234556678888888765    355778899999


Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc------
Q 010037          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ------  462 (519)
Q Consensus       390 ~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~------  462 (519)
                      .|.+++|++ .+|++|+.|++|++||+++++++..+. |...|++++|   ++.+|++|+.||.|++||++++.      
T Consensus       298 ~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  373 (435)
T 1p22_A          298 GIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPA  373 (435)
T ss_dssp             CEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred             cEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccc
Confidence            999999953 399999999999999999999999887 9999999999   57899999999999999997654      


Q ss_pred             ---EE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          463 ---VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       463 ---~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                         .+ .+..|...|++++|  ++++|++|+.||.|++||+.+....
T Consensus       374 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          374 GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             TTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred             cchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence               44 57889999999999  7889999999999999999876543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=2e-24  Score=252.23  Aligned_cols=264  Identities=16%  Similarity=0.231  Sum_probs=201.8

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~I  308 (519)
                      +.+|...+.+++|+|++++|++|+.||.|+||++..+.       ....+.+|...|.+++|+|  ++.++++|+.||.|
T Consensus       653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v  725 (1249)
T 3sfz_A          653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL  725 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCE
T ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeE
Confidence            44567788889999999999999999999999988543       2346789999999999999  55699999999999


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCC--------eEEeeccCCceeeeee---------------------e-
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ--------LIPIDVDKEKIDKTKS---------------------L-  358 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---------------------~-  358 (519)
                      ++||+.++++...+..+...+.++.+.++....        +..+............                     + 
T Consensus       726 ~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  805 (1249)
T 3sfz_A          726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS  805 (1249)
T ss_dssp             EEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred             EEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence            999999999998888888888888887754321        1112211111100000                     0 


Q ss_pred             --------ccCCCeeEEEeCCccccccccceeEe-eccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-C
Q 010037          359 --------RKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-H  427 (519)
Q Consensus       359 --------~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h  427 (519)
                              ....++.+.+|+...    ...+..+ .+|...|.+++|+|++ ++++++.|+.|++||+.++..+..+. |
T Consensus       806 ~s~dg~~l~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  881 (1249)
T 3sfz_A          806 WSADGDKIIVAAKNKVLLFDIHT----SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH  881 (1249)
T ss_dssp             BCTTSSEEEEEETTEEEEEETTT----CCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred             ECCCCCEEEEEcCCcEEEEEecC----CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC
Confidence                    000122233333322    1223333 3799999999999999 99999999999999999999988886 9


Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-----------------------------------------------
Q 010037          428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-----------------------------------------------  460 (519)
Q Consensus       428 ~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~-----------------------------------------------  460 (519)
                      ...|++++|+| ++.+|++++.||.|++||+.+                                               
T Consensus       882 ~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  960 (1249)
T 3sfz_A          882 LSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP  960 (1249)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC
T ss_pred             ccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcc
Confidence            99999999999 999999999999999998532                                               


Q ss_pred             --------------------------------CcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          461 --------------------------------CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       461 --------------------------------~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                                                      ++.+ ....|...|++++|+|+|++|++++.||.|++||+.+++...
T Consensus       961 ~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A          961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred             cCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence                                            1111 234577889999999999999999999999999999887654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.93  E-value=1.1e-23  Score=218.87  Aligned_cols=235  Identities=21%  Similarity=0.436  Sum_probs=191.4

Q ss_pred             eeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 010037          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iW  311 (519)
                      .+|...+.+++|+  +.++++|+.||.|++|++....       ....+.+|...|.++.|+  +++|++|+.||.|++|
T Consensus       156 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~w  224 (445)
T 2ovr_B          156 VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-------CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVW  224 (445)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred             cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-------EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEE
Confidence            3455666677776  6799999999999999987543       234577899999999995  5689999999999999


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      |+.+++....+..+...+.++.+   ...               ..+.++.++.+.+|+...    .+++..+.+|...|
T Consensus       225 d~~~~~~~~~~~~~~~~v~~~~~---~~~---------------~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v  282 (445)
T 2ovr_B          225 DIETGQCLHVLMGHVAAVRCVQY---DGR---------------RVVSGAYDFMVKVWDPET----ETCLHTLQGHTNRV  282 (445)
T ss_dssp             ESSSCCEEEEEECCSSCEEEEEE---CSS---------------CEEEEETTSCEEEEEGGG----TEEEEEECCCSSCE
T ss_pred             ECCCCcEEEEEcCCcccEEEEEE---CCC---------------EEEEEcCCCEEEEEECCC----CcEeEEecCCCCce
Confidence            99999888888777666666555   111               123445566777777554    34577888999999


Q ss_pred             eEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-ecc
Q 010037          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTD  468 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~  468 (519)
                      .+++|  ++ +|++++.|+.|++||+++++++..+. |...+.++.++   +++|++|+.||.|++||+++++.+. +..
T Consensus       283 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             EEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             EEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence            99999  45 99999999999999999999998886 88899988874   5799999999999999999988774 333


Q ss_pred             ---CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          469 ---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       469 ---~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                         |...|++++|+  +++|++|+.||.|++||+.+++...
T Consensus       358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          358 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceee
Confidence               78889999995  6799999999999999999887654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.93  E-value=8e-25  Score=227.01  Aligned_cols=207  Identities=19%  Similarity=0.229  Sum_probs=163.3

Q ss_pred             ceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeeece--eeccCCCCceEEEeecCCCCeEEeeccCCceee
Q 010037          278 QEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDG--FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK  354 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (519)
                      ....+|...|+||+|+| ++++||+|+.||.|+|||+.+++....  +..|...+.++.|.+.....+            
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l------------  180 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQF------------  180 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEE------------
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEE------------
Confidence            35677999999999999 567999999999999999987764433  345677788888876443333            


Q ss_pred             eeeeccCCCeeEEEeCCccccccccceeEee---ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCc
Q 010037          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNY  430 (519)
Q Consensus       355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~  430 (519)
                         +.++.++.+.+|+...     ..+..+.   .+...+.+++|+|++ +|++|+.|++|++||++.........|...
T Consensus       181 ---~s~s~D~~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~  252 (435)
T 4e54_B          181 ---YASSMEGTTRLQDFKG-----NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKK  252 (435)
T ss_dssp             ---EEECSSSCEEEEETTS-----CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSC
T ss_pred             ---EEEeCCCEEEEeeccC-----CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccce
Confidence               3456677777776543     2222222   344568899999999 999999999999999976543333349999


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE----eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~----~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      |++++|+|....+|++|+.|+.|+|||+++.+..    ....|...|++++|+|+|++|++++.||.|+|||+.+++.
T Consensus       253 v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          253 VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred             EEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence            9999999955568999999999999999886533    3467889999999999999999999999999999987654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.7e-24  Score=224.36  Aligned_cols=238  Identities=12%  Similarity=0.035  Sum_probs=181.2

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccc----------------------cccccccceee-cCCCCEEEEEE
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE----------------------LSSLYTGQEFL-AHEGSILTMKF  292 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~----------------------~~~~~~~~~l~-~H~~~I~~l~f  292 (519)
                      +.+.+++|+|||+++|+++.|++|+  +.......                      +........+. .|...|.+++|
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vaw   93 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKP   93 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEE
Confidence            5677899999999999999999996  32221100                      00011111222 56889999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEecccCeeeceeeccCC-----CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE
Q 010037          293 SLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV  367 (519)
Q Consensus       293 spdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  367 (519)
                      ||+|++||+++.||.|+||+...  ++..+. +..     .+.++.|++++..                ...++.++.+.
T Consensus        94 SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~----------------LAsgs~DGtVk  154 (588)
T 2j04_A           94 SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESS----------------IVVGNEDGELQ  154 (588)
T ss_dssp             CSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSC----------------EEEEETTSEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCE----------------EEEEcCCCEEE
Confidence            99999999999999999999644  444444 333     2556666665432                23456677888


Q ss_pred             EeCCcccccccc---ceeEe----eccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE---EEEe--cCCCcEEEEE
Q 010037          368 VLPPKVFRLLEK---PLHEF----QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRVF--SHNNYVTSVA  435 (519)
Q Consensus       368 ~~~~~~~~~~~~---~~~~~----~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~---~~~~--~h~~~V~~v~  435 (519)
                      +|+.....+.+.   .+.++    .+|...|.+++|+|+| |++++.|++|++||+..+..   .+++  .|...|.+++
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            888765432111   24565    6688899999999999 99999999999999988773   3455  3778999999


Q ss_pred             EeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE--eeCCCEEEEEecCCeEEEEECC
Q 010037          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY--CPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~--spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      |+   +++||+++ +++|++||+.+++.. ...+|...|..++|  +||++.|++++.+|. ++|...
T Consensus       234 Fs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          234 IV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            98   48899887 799999999999884 44489999999999  999999999999999 999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.5e-24  Score=213.87  Aligned_cols=209  Identities=18%  Similarity=0.250  Sum_probs=169.3

Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc--cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeee
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (519)
                      +.+.+|.+.|++++|+|++++||+|+.||.|+||++.  +++....+..+...+.++.|.+......             
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-------------   71 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI-------------   71 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE-------------
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCE-------------
Confidence            4578999999999999999999999999999999998  5566666777777777777765432222             


Q ss_pred             eeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeE---EEEecCCC
Q 010037          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRC---LRVFSHNN  429 (519)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~-~L~sgs~Dg~V~lWdl~~~~~---~~~~~h~~  429 (519)
                       .+.++.++.+.+|+.....  ...+..+.+|...|.+++|+|+  + +|++++.|+.|++||+.++..   .....|..
T Consensus        72 -l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           72 -LASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             -EEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             -EEEeccCCEEEEEEcCCCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence             2334455666676654321  1246677889999999999998  7 999999999999999988732   23335999


Q ss_pred             cEEEEEEeeC------------CCCEEEEEeCCCeEEEEEcCCCc----EE-eeccCCCceEEEEEeeC---CCEEEEEe
Q 010037          430 YVTSVAFNPV------------DDNYFISGSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPD---GKGGIVGT  489 (519)
Q Consensus       430 ~V~~v~fsp~------------d~~~l~sgs~Dg~V~iwd~~~~~----~~-~~~~~~~~V~~v~~spd---g~~l~sgs  489 (519)
                      .|++++|+|.            ++.+|++|+.||.|++||++++.    +. .+..|...|++++|+|+   +++|++++
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            9999999995            58999999999999999998754    22 46778999999999999   89999999


Q ss_pred             cCCeEEEEECCCC
Q 010037          490 MTGNCRFYDIKGM  502 (519)
Q Consensus       490 ~dg~v~iwdl~~~  502 (519)
                      .||.|++||+.++
T Consensus       229 ~dg~i~iwd~~~~  241 (379)
T 3jrp_A          229 QDRTCIIWTQDNE  241 (379)
T ss_dssp             TTSCEEEEEESST
T ss_pred             CCCEEEEEeCCCC
Confidence            9999999999876

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.92  E-value=4.3e-24  Score=211.63  Aligned_cols=211  Identities=13%  Similarity=0.187  Sum_probs=168.3

Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC----eeeceeeccCCCCceEEEeecCCCCeEEeeccCCcee
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID  353 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (519)
                      +.+.+|.+.|++++|+|++++||+|+.||.|++||+.++    +....+..+...+.++.|.+.....            
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~------------   72 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR------------   72 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS------------
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC------------
Confidence            356799999999999999999999999999999999876    3455556677777777776542111            


Q ss_pred             eeeeeccCCCeeEEEeCCccccccc-----cceeEeeccCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeEEEEe
Q 010037          354 KTKSLRKSSDLTCVVLPPKVFRLLE-----KPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVF  425 (519)
Q Consensus       354 ~~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~V~~l~~sp~--~-~L~sgs~Dg~V~lWdl~~~~~~~~~  425 (519)
                        ..+.++.++.+.+|+........     +++..+.+|...|.+++|+|+  + +|++++.|+.|++||+++++.+..+
T Consensus        73 --~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  150 (351)
T 3f3f_A           73 --IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW  150 (351)
T ss_dssp             --EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred             --EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence              12334456667777655432211     456778899999999999998  8 9999999999999999887644322


Q ss_pred             --------------cCCCcEEEEEEeeC--CCCEEEEEeCCCeEEEEEcCCCcE---EeeccCCCceEEEEEeeCC----
Q 010037          426 --------------SHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDG----  482 (519)
Q Consensus       426 --------------~h~~~V~~v~fsp~--d~~~l~sgs~Dg~V~iwd~~~~~~---~~~~~~~~~V~~v~~spdg----  482 (519)
                                    .|...+.+++|+|.  ++.+|++++.|+.+.+|+...++.   ..+..|...|++++|+|++    
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~  230 (351)
T 3f3f_A          151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY  230 (351)
T ss_dssp             EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred             cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence                          37788999999993  389999999999998888888764   2566789999999999998    


Q ss_pred             CEEEEEecCCeEEEEECCCC
Q 010037          483 KGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       483 ~~l~sgs~dg~v~iwdl~~~  502 (519)
                      ++|++|+.||.|++||+.++
T Consensus       231 ~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEEC
T ss_pred             eEEEEEcCCCeEEEEeCCCC
Confidence            89999999999999999865

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.6e-24  Score=217.27  Aligned_cols=197  Identities=12%  Similarity=0.056  Sum_probs=157.9

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~  320 (519)
                      ..+.+++.++++|+.||.|++|++.......       .+.  ...|.++.|+|+   +++++.|++|++|+......+.
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~-------~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTIT-------TIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEE-------EEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEE-------EEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence            3566788999999999999999998654321       122  467888889988   9999999999999985421110


Q ss_pred             eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-eccCCCeeEEEEcC-
Q 010037          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSK-  398 (519)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp-  398 (519)
                        ..                                               ..    .+.+..+ .+|...|.+++|+| 
T Consensus       110 --~~-----------------------------------------------~~----~~~~~~~~~~~~~~v~~~~~~~~  136 (343)
T 3lrv_A          110 --DS-----------------------------------------------KT----NKVLREIEVDSANEIIYMYGHNE  136 (343)
T ss_dssp             --ET-----------------------------------------------TT----CCEEEEEECCCSSCEEEEECCC-
T ss_pred             --ec-----------------------------------------------CC----cceeEEeecCCCCCEEEEEcCCC
Confidence              00                                               00    0112222 35778999999999 


Q ss_pred             -CC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eecc-CCC
Q 010037          399 -NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTD-IRE  471 (519)
Q Consensus       399 -~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~-~~~  471 (519)
                       ++ +|++++.|++|++||+++++++..+.  +...|++++|+| ++.+|++|+.||.|+|||+++++.+  .+.. |..
T Consensus       137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~  215 (343)
T 3lrv_A          137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA  215 (343)
T ss_dssp             --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC
Confidence             88 99999999999999999999977763  566899999999 9999999999999999999998866  5666 899


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      .|++++|+|+|.+|++++ ++.|++||+++++.
T Consensus       216 ~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          216 KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG  247 (343)
T ss_dssp             CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred             CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence            999999999999999999 55999999998754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.92  E-value=6.8e-23  Score=213.59  Aligned_cols=295  Identities=18%  Similarity=0.142  Sum_probs=218.8

Q ss_pred             ceeeeecCCCceeEEccCCCchhhhhhcccccCC--CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccc
Q 010037          146 ACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS--SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRG  223 (519)
Q Consensus       146 ~~~~~~~d~g~~~~~~~~~~~~~~~~~~l~~v~~--~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~  223 (519)
                      .-+++|+..|+....-.    +|...  +..+.+  +..+.....++++.     +|.+...+                 
T Consensus       143 ~i~vwd~~~~~~~~~~~----~h~~~--V~~l~~~~~~~l~s~s~dg~i~-----vwd~~~~~-----------------  194 (464)
T 3v7d_B          143 MIRVYDSINKKFLLQLS----GHDGG--VWALKYAHGGILVSGSTDRTVR-----VWDIKKGC-----------------  194 (464)
T ss_dssp             CEEEEETTTTEEEEEEC----CCSSC--EEEEEECSTTEEEEEETTSCEE-----EEETTTTE-----------------
T ss_pred             cEEEEECCCCcEEEEEe----CCCcC--EEEEEEcCCCEEEEEeCCCCEE-----EEECCCCc-----------------
Confidence            35677877776433211    23332  444443  23566666666666     77653221                 


Q ss_pred             cccccCCeeeEeecccceeec--CCCCeEEeeecCCeEEEeeCCccccccc----------------cccccceeecCCC
Q 010037          224 WLKKLGAMARIIDRHGSATLK--PGDHELTLGQRMRRVRVHPVKKQSRELS----------------SLYTGQEFLAHEG  285 (519)
Q Consensus       224 w~~~~~~~~~~~~~~~~~~~s--p~g~~lasgs~dg~I~vw~~~~~~~~~~----------------~~~~~~~l~~H~~  285 (519)
                         ....+.+|...+.+++|+  |++.++++|+.||.|++|++........                .......+.+|..
T Consensus       195 ---~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (464)
T 3v7d_B          195 ---CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  271 (464)
T ss_dssp             ---EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred             ---EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence               111233456677778887  6889999999999999999986543211                0112345788999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCee
Q 010037          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (519)
                      .|.++  ++++++|++|+.||.|++||+.+++.+..+..+...+.++.+.+...                ..+.++.++.
T Consensus       272 ~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~sg~~dg~  333 (464)
T 3v7d_B          272 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK----------------RCISASMDTT  333 (464)
T ss_dssp             CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT----------------EEEEEETTSC
T ss_pred             eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC----------------EEEEEeCCCc
Confidence            99887  57789999999999999999999999888887777777777766432                1234556677


Q ss_pred             EEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE
Q 010037          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~  445 (519)
                      +.+|+...    ++++..+.+|...|.+++|++ .+|++++.|++|++||+.++.......+...+..++|+| ++.+++
T Consensus       334 i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  407 (464)
T 3v7d_B          334 IRIWDLEN----GELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV-SDNILV  407 (464)
T ss_dssp             EEEEETTT----TEEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEE-CSSEEE
T ss_pred             EEEEECCC----CcEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEe-CCCEEE
Confidence            88887654    356788899999999999984 499999999999999999999888888888999999999 999999


Q ss_pred             EEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037          446 SGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (519)
Q Consensus       446 sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw  497 (519)
                      +|+ ||.|++||+++++++.  ...+...|++++|+ +..++++++.+|.+.+|
T Consensus       408 ~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          408 SGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             Eec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            999 9999999999999885  57788999999997 34455556667765544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=2e-23  Score=216.12  Aligned_cols=208  Identities=17%  Similarity=0.253  Sum_probs=167.2

Q ss_pred             eeecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeccc----------CeeeceeeccCCCCceEEEeecCCCCeEEeec
Q 010037          279 EFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIE----------HERLDGFDVQDTDPSCLYFTINHLSQLIPIDV  347 (519)
Q Consensus       279 ~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~iWd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (519)
                      ....|.+.|++++|+|+ +.+||+++.||.|++|++.+          ......+..+...+.++.|.+.....      
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~------  196 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY------  196 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE------
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe------
Confidence            45689999999999997 68999999999999999987          45556666677777777776654332      


Q ss_pred             cCCceeeeeeeccCCCeeEEEeCCcccccc---ccceeEeeccCCCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCC---
Q 010037          348 DKEKIDKTKSLRKSSDLTCVVLPPKVFRLL---EKPLHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGID---  419 (519)
Q Consensus       348 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~---  419 (519)
                               .+.++.++.+.+|+.......   ..+...+.+|...|.+++|+|+ + +|++++.|+.|++||++++   
T Consensus       197 ---------l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~  267 (430)
T 2xyi_A          197 ---------LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS  267 (430)
T ss_dssp             ---------EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred             ---------EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence                     234556677778877652211   1235667789999999999994 4 9999999999999999987   


Q ss_pred             eEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC-cEE-eeccCCCceEEEEEeeCCC-EEEEEecCCeEE
Q 010037          420 RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-DYTDIREIVSAVCYCPDGK-GGIVGTMTGNCR  495 (519)
Q Consensus       420 ~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~-~~~-~~~~~~~~V~~v~~spdg~-~l~sgs~dg~v~  495 (519)
                      +++..+ .|...|++++|+|....+|++|+.||.|++||+++. +.+ .+..|...|++++|+|+++ +|++++.||.|+
T Consensus       268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred             cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence            456666 599999999999943448999999999999999983 333 5677999999999999995 689999999999


Q ss_pred             EEECCC
Q 010037          496 FYDIKG  501 (519)
Q Consensus       496 iwdl~~  501 (519)
                      |||+..
T Consensus       348 iwd~~~  353 (430)
T 2xyi_A          348 VWDLSK  353 (430)
T ss_dssp             EEEGGG
T ss_pred             EEeCCC
Confidence            999986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.4e-23  Score=201.10  Aligned_cols=220  Identities=22%  Similarity=0.291  Sum_probs=175.2

Q ss_pred             cccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEE--------ee
Q 010037          275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP--------ID  346 (519)
Q Consensus       275 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  346 (519)
                      ...+.+.+|.+.|++++| |++++|++|+.||.|++||+.++.....+..+...+.++.+.++....+..        +.
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            344578899999999999 999999999999999999999998888888888888888887754322111        11


Q ss_pred             ccCCc----e---------------eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC-CC-eEEEE
Q 010037          347 VDKEK----I---------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSS  405 (519)
Q Consensus       347 ~~~~~----~---------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~-~L~sg  405 (519)
                      .....    .               .....+.++.++.+.+|+      ....+..+..|...|.+++|.| ++ +|+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK------EGSLVYNLQAHNASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE------TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred             eeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc------CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence            11100    0               001123445566666665      3456778889999999999998 66 99999


Q ss_pred             eCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCC
Q 010037          406 SADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG  482 (519)
Q Consensus       406 s~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg  482 (519)
                      +.|+.|++||  ..+.+..+.  |...|++++|+| ++. +++++.||.|++||+++++.+ .+..|...|++++|+|++
T Consensus       162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG  237 (313)
T ss_dssp             ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence            9999999999  455565654  899999999999 776 999999999999999998877 567799999999999999


Q ss_pred             CEEEEEecCCeEEEEECCCCeeee
Q 010037          483 KGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       483 ~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                       .|++++.||.|++||+.++++..
T Consensus       238 -~l~~~~~dg~v~iwd~~~~~~~~  260 (313)
T 3odt_A          238 -DIVSCGEDRTVRIWSKENGSLKQ  260 (313)
T ss_dssp             -CEEEEETTSEEEEECTTTCCEEE
T ss_pred             -CEEEEecCCEEEEEECCCCceeE
Confidence             58999999999999999887654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.2e-23  Score=205.66  Aligned_cols=208  Identities=18%  Similarity=0.304  Sum_probs=171.5

Q ss_pred             cceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeee
Q 010037          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (519)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (519)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++....+..+...+.++.|.++..                .
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~   88 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK----------------Y   88 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS----------------E
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCC----------------E
Confidence            346889999999999999999999999999999999999999888887777777777765432                1


Q ss_pred             eeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCC-----CcEEEEECCCCeE---------
Q 010037          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRC---------  421 (519)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D-----g~V~lWdl~~~~~---------  421 (519)
                      .+.++.++.+.+|+....    +.+..+. |...|.+++|+|++ +|++++.+     +.|++||+.....         
T Consensus        89 l~s~~~dg~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~  163 (369)
T 3zwl_B           89 CVTGSADYSIKLWDVSNG----QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE  163 (369)
T ss_dssp             EEEEETTTEEEEEETTTC----CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS
T ss_pred             EEEEeCCCeEEEEECCCC----cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc
Confidence            123445667777776542    3445555 88999999999999 99999998     9999999876532         


Q ss_pred             --EEEe-cCCC--cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-CcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeE
Q 010037          422 --LRVF-SHNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNC  494 (519)
Q Consensus       422 --~~~~-~h~~--~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~-~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v  494 (519)
                        +..+ .|..  .+++++|+| ++++|++++.||.|++||+++ .+.+ .+..|...|.+++|+|++++|++++.||.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  242 (369)
T 3zwl_B          164 EPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNS  242 (369)
T ss_dssp             SCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceE
Confidence              2222 2444  899999999 999999999999999999998 5555 567789999999999999999999999999


Q ss_pred             EEEECCCCeeee
Q 010037          495 RFYDIKGMQIFD  506 (519)
Q Consensus       495 ~iwdl~~~~l~~  506 (519)
                      ++||+.++++..
T Consensus       243 ~v~d~~~~~~~~  254 (369)
T 3zwl_B          243 FLVDVSTLQVLK  254 (369)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEECCCCceee
Confidence            999999876554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=2.2e-23  Score=212.21  Aligned_cols=222  Identities=18%  Similarity=0.313  Sum_probs=173.1

Q ss_pred             cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEecccCeeeceee----------
Q 010037          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFD----------  323 (519)
Q Consensus       255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~----------  323 (519)
                      .++.+++|++....       ....+.+|.+.|++++|+| ++++||+|+.||.|++||+.++.....+.          
T Consensus        21 ~~~~~~v~~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   93 (408)
T 4a11_B           21 AESTRRVLGLELNK-------DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD   93 (408)
T ss_dssp             HHHHHHHHTEEECT-------TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTT
T ss_pred             ccCcceeeccccCc-------ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccc
Confidence            45567777765332       2234678999999999999 99999999999999999999887665553          


Q ss_pred             ---ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC-
Q 010037          324 ---VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN-  399 (519)
Q Consensus       324 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-  399 (519)
                         .+...+.++.|.+.....+               +.++.++.+.+|+.....    .+..+ .+...+.+++|+|. 
T Consensus        94 ~~~~~~~~v~~~~~~~~~~~~l---------------~s~~~d~~i~iwd~~~~~----~~~~~-~~~~~~~~~~~~~~~  153 (408)
T 4a11_B           94 HPDVHRYSVETVQWYPHDTGMF---------------TSSSFDKTLKVWDTNTLQ----TADVF-NFEETVYSHHMSPVS  153 (408)
T ss_dssp             CTTCCSSCEEEEEECTTCTTCE---------------EEEETTSEEEEEETTTTE----EEEEE-ECSSCEEEEEECSSC
T ss_pred             ccccCCCcEEEEEEccCCCcEE---------------EEEeCCCeEEEeeCCCCc----cceec-cCCCceeeeEeecCC
Confidence               2445555666655333322               234456677777665422    23333 37788999999984 


Q ss_pred             --C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCC-EEEEEeCCCeEEEEEcCCCcE-E-ee------
Q 010037          400 --G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQV-V-DY------  466 (519)
Q Consensus       400 --~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~iwd~~~~~~-~-~~------  466 (519)
                        + ++++++.|+.|++||+++++++..+. |...|++++|+| ++. +|++|+.||.|++||+++... + .+      
T Consensus       154 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  232 (408)
T 4a11_B          154 TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGK  232 (408)
T ss_dssp             SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC
T ss_pred             CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccc
Confidence              3 89999999999999999999888886 999999999999 666 699999999999999987642 1 11      


Q ss_pred             ---------ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          467 ---------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       467 ---------~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                               ..|...|++++|+|+|++|++++.||.|++||+.+++.
T Consensus       233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred             cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence                     56888999999999999999999999999999988654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.4e-23  Score=212.65  Aligned_cols=245  Identities=11%  Similarity=0.026  Sum_probs=185.1

Q ss_pred             eeEeecccceeecCCCCeE-EeeecCCeEEEeeCC--ccccccccccccceee--cCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          232 ARIIDRHGSATLKPGDHEL-TLGQRMRRVRVHPVK--KQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~~l-asgs~dg~I~vw~~~--~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      ..+...+.+++|+|++++| ++|+.||.|+||++.  ....       .+.+.  .|...|.+++|+|++++|++|+.||
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g  171 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-------LKLRKRFCFSKRPNAISIAEDDTTVIIADKFG  171 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-------EEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-------eeeeecccCCCCceEEEEcCCCCEEEEEeCCC
Confidence            3455678889999999996 889999999999987  3321       12333  6789999999999999999999999


Q ss_pred             cEEEEecccCeeec----eeeccCCCCceEEEeecC-CCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037          307 TVRVWKVIEHERLD----GFDVQDTDPSCLYFTINH-LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (519)
Q Consensus       307 ~I~iWd~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (519)
                      .|++|++.++....    .+..+...+.++.|.++. ...              ..+.++.++.+.+|+...    .+.+
T Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~--------------~l~s~~~d~~i~vwd~~~----~~~~  233 (450)
T 2vdu_B          172 DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ--------------FIITSDRDEHIKISHYPQ----CFIV  233 (450)
T ss_dssp             EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE--------------EEEEEETTSCEEEEEESC----TTCE
T ss_pred             cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc--------------EEEEEcCCCcEEEEECCC----Ccee
Confidence            99999998877554    566667777778777761 111              122344556677776543    2334


Q ss_pred             eE-eeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecC--------------------------CCcEEE
Q 010037          382 HE-FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--------------------------NNYVTS  433 (519)
Q Consensus       382 ~~-~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h--------------------------~~~V~~  433 (519)
                      .. +.+|...|.+++|+ ++ +|++++.|++|+|||+.+++++..+..                          ...|.+
T Consensus       234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            44 56899999999999 88 999999999999999999998888751                          356899


Q ss_pred             EEEeeCCCCEEEEEe-CCCeEEEEEc--CCC---cEEe-eccCCCceEEEEEeeCCCEEEEEec------CCeEEEEECC
Q 010037          434 VAFNPVDDNYFISGS-IDGKVRIWEV--RRC---QVVD-YTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIK  500 (519)
Q Consensus       434 v~fsp~d~~~l~sgs-~Dg~V~iwd~--~~~---~~~~-~~~~~~~V~~v~~spdg~~l~sgs~------dg~v~iwdl~  500 (519)
                      ++|+| ++++|++++ .|+.|+||++  .++   +.+. +..+ ..|.+++|+|++.++++++.      +..|.+|.+.
T Consensus       313 i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          313 IIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            99999 999999999 8999999999  554   4443 3444 88999999996544433333      4457888654


Q ss_pred             --CCee
Q 010037          501 --GMQI  504 (519)
Q Consensus       501 --~~~l  504 (519)
                        ++++
T Consensus       391 ~~~~~~  396 (450)
T 2vdu_B          391 LNENSF  396 (450)
T ss_dssp             TTTTEE
T ss_pred             cCCCeE
Confidence              4444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.91  E-value=5.1e-22  Score=201.89  Aligned_cols=240  Identities=11%  Similarity=0.097  Sum_probs=183.3

Q ss_pred             cccceeecCCCCeE-EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEecc
Q 010037          237 RHGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVI  314 (519)
Q Consensus       237 ~~~~~~~sp~g~~l-asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg~I~iWd~~  314 (519)
                      .+.+++|+|+++++ ++++.++.|++|+......       .+.+..|. .|.+++|+|++++|+. ++.|+.|++||+.
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            34578999999987 6777999999999875442       22344444 8999999999998855 4567999999999


Q ss_pred             cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (519)
                      +++....+..+. .+..+.+.++... +              .+....++.+.+|+....    +.+..+..| ..+.++
T Consensus       105 ~~~~~~~~~~~~-~~~~~~~s~dg~~-l--------------~~~~~~~~~v~~~d~~~~----~~~~~~~~~-~~~~~~  163 (391)
T 1l0q_A          105 SNTVAGTVKTGK-SPLGLALSPDGKK-L--------------YVTNNGDKTVSVINTVTK----AVINTVSVG-RSPKGI  163 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTTSSE-E--------------EEEETTTTEEEEEETTTT----EEEEEEECC-SSEEEE
T ss_pred             CCeEEEEEeCCC-CcceEEECCCCCE-E--------------EEEeCCCCEEEEEECCCC----cEEEEEecC-CCcceE
Confidence            998877665433 3344444443321 1              122344566777766542    334445544 557999


Q ss_pred             EEcCCC-eE-EEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe---CCCeEEEEEcCCCcEEeeccC
Q 010037          395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQVVDYTDI  469 (519)
Q Consensus       395 ~~sp~~-~L-~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~iwd~~~~~~~~~~~~  469 (519)
                      +|+|++ +| ++++.++.|++||+++++++..+.+...+.+++|+| ++++|++++   .++.|++||+.+++.+.....
T Consensus       164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~  242 (391)
T 1l0q_A          164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence            999999 55 677889999999999999999998888999999999 888888887   689999999999988865555


Q ss_pred             CCceEEEEEeeCCCEE-EEEecCCeEEEEECCCCeeee
Q 010037          470 REIVSAVCYCPDGKGG-IVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l-~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ...+.+++|+|+|++| ++++.|+.|++||+.++++..
T Consensus       243 ~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          243 GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence            5678999999999987 566889999999999988754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=1e-22  Score=210.06  Aligned_cols=246  Identities=11%  Similarity=0.094  Sum_probs=193.8

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      +.+++|+|++.++++++.++.|++|+.......  .......+.+|.+.|.+++|+++++++++++.|+.|++||+.+++
T Consensus       125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            446899998888888999999999998865432  111122356899999999999999999999999999999999988


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      ....+..+...+.++.+.+.....+               +....++.+.+|+....    +.+..+.. ...+.+++|+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~i~~~d~~~~----~~~~~~~~-~~~~~~~~~~  262 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVY---------------CSNWISEDISVIDRKTK----LEIRKTDK-IGLPRGLLLS  262 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEE---------------EEETTTTEEEEEETTTT----EEEEECCC-CSEEEEEEEC
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEE---------------EEecCCCcEEEEECCCC----cEEEEecC-CCCceEEEEc
Confidence            8887776666666676665442211               12233456666665432    22344443 3459999999


Q ss_pred             CCC-eEEEEe--------CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCC-EEEEEeCCCeEEEEEcCCCcEEeec
Q 010037          398 KNG-FLLSSS--------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVVDYT  467 (519)
Q Consensus       398 p~~-~L~sgs--------~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~iwd~~~~~~~~~~  467 (519)
                      |++ +|++++        .|+.|++||+.+++.+..+.|...+.+++|+| +++ ++++++.|+.|++||+.+++++...
T Consensus       263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~~  341 (433)
T 3bws_A          263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKSI  341 (433)
T ss_dssp             TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence            999 888877        58899999999999998888888999999999 775 5567789999999999999888766


Q ss_pred             cCCCceEEEEEeeCCCEEEEEec---------------CCeEEEEECCCCeeee
Q 010037          468 DIREIVSAVCYCPDGKGGIVGTM---------------TGNCRFYDIKGMQIFD  506 (519)
Q Consensus       468 ~~~~~V~~v~~spdg~~l~sgs~---------------dg~v~iwdl~~~~l~~  506 (519)
                      .+...+.+++|+|+|++|++++.               ||.|++||+.++++..
T Consensus       342 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~  395 (433)
T 3bws_A          342 PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE  395 (433)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred             cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence            78888999999999999988876               5799999999887654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=4.4e-22  Score=205.26  Aligned_cols=246  Identities=10%  Similarity=0.084  Sum_probs=187.4

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCCcEEEEe
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWK  312 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~I~iWd  312 (519)
                      |...+.+++|+|++.++++++.++.|++|++.....       ...+..|...+.+++|+|++++|+ +++.|+.|++||
T Consensus       168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d  240 (433)
T 3bws_A          168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY-------KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID  240 (433)
T ss_dssp             TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-------EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-------EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence            445666789999999999999999999999875332       234667899999999999999885 455899999999


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      +.+++....+.... .+..+.+.+... .++.........       ...++.+.+|+.....    .+. ...|...+.
T Consensus       241 ~~~~~~~~~~~~~~-~~~~~~~~~~g~-~l~~~~~~~~~~-------~~~dg~i~~~d~~~~~----~~~-~~~~~~~~~  306 (433)
T 3bws_A          241 RKTKLEIRKTDKIG-LPRGLLLSKDGK-ELYIAQFSASNQ-------ESGGGRLGIYSMDKEK----LID-TIGPPGNKR  306 (433)
T ss_dssp             TTTTEEEEECCCCS-EEEEEEECTTSS-EEEEEEEESCTT-------CSCCEEEEEEETTTTE----EEE-EEEEEECEE
T ss_pred             CCCCcEEEEecCCC-CceEEEEcCCCC-EEEEEECCCCcc-------ccCCCeEEEEECCCCc----EEe-eccCCCCcc
Confidence            99988776665432 234444444332 122221111110       0246677777765432    222 235666899


Q ss_pred             EEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---------------CCeEEE
Q 010037          393 DLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---------------DGKVRI  455 (519)
Q Consensus       393 ~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---------------Dg~V~i  455 (519)
                      +++|+|++  .+++++.|+.|++||+.+++.+..+.+...+.+++|+| +++++++++.               ||.|++
T Consensus       307 ~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~  385 (433)
T 3bws_A          307 HIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYV  385 (433)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEE
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEE
Confidence            99999998  55677899999999999999999999999999999999 8998888876               579999


Q ss_pred             EEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEec-CCeEEEEECCC
Q 010037          456 WEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKG  501 (519)
Q Consensus       456 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~  501 (519)
                      ||+.+++.+........+.+++|+|+|++|++++. |+.|++|++.+
T Consensus       386 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          386 IDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            99999998876666778999999999999998875 99999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=4.3e-22  Score=200.93  Aligned_cols=214  Identities=14%  Similarity=0.058  Sum_probs=135.6

Q ss_pred             eeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecC---------CCCeEEeeccC
Q 010037          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINH---------LSQLIPIDVDK  349 (519)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  349 (519)
                      .+.+|...|++++|+|||++||+|+.|+ ++||++.+++........  ....+.+....         ...+..++...
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            4578999999999999999999998775 789999877665444322  23333332221         11222222221


Q ss_pred             Cceeeeee-------eccC-------CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEE--EeCCCcEEE
Q 010037          350 EKIDKTKS-------LRKS-------SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLS--SSADKTVRL  413 (519)
Q Consensus       350 ~~~~~~~~-------~~~s-------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~s--gs~Dg~V~l  413 (519)
                      ........       +...       .+..+.+|+....   .+.+..+..   ....+++++ .+++.  |+.||.|++
T Consensus        91 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~---~~~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           91 KQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP---WKRITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             TEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTT---CCBSSCCEE---EEEEEEEET-TEEEEEESSCTTCEEE
T ss_pred             CcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCC---ceeeEEecc---CCceEEEEc-cEEEEeCCCcCcEEEE
Confidence            11110000       0000       1111222222111   011222221   223344455 44444  688999999


Q ss_pred             EECCCCe---------------E-EEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCcEEe-ec-c-CCCc
Q 010037          414 WQVGIDR---------------C-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVD-YT-D-IREI  472 (519)
Q Consensus       414 Wdl~~~~---------------~-~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~iwd~~~~~~~~-~~-~-~~~~  472 (519)
                      ||+.++.               + +..+ .|...|++++|+| ++.+|++|+.|++ |+|||+++++.+. +. + |...
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~  242 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD  242 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc
Confidence            9999865               1 4455 4999999999999 9999999999998 9999999998875 44 3 8999


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      |++++|+|+|++|++++.||.|+|||+..+.
T Consensus       243 v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9999999999999999999999999998653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.90  E-value=8.6e-22  Score=193.67  Aligned_cols=208  Identities=19%  Similarity=0.223  Sum_probs=155.2

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccc----------------------------------ccccccee
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------SLYTGQEF  280 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~----------------------------------~~~~~~~l  280 (519)
                      ...+.+++|+|++++|++|+.||+|+||++........                                  .......+
T Consensus        67 ~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~  146 (318)
T 4ggc_A           67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL  146 (318)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEE
Confidence            34567899999999999999999999999876442110                                  01112346


Q ss_pred             ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeece----eeccCCCCceEEEeecCCCCeEEeeccCCceeeee
Q 010037          281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG----FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (519)
Q Consensus       281 ~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (519)
                      .+|...+.++.|++++++|++++.||.|++||+.+++....    ...+...+..+.+.+.....             ..
T Consensus       147 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------~~  213 (318)
T 4ggc_A          147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV-------------LA  213 (318)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE-------------EE
T ss_pred             cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE-------------EE
Confidence            78999999999999999999999999999999987654322    12222223333333332222             22


Q ss_pred             eeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe--CCCcEEEEECCCCeEEEEec-CCCcEE
Q 010037          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYVT  432 (519)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs--~Dg~V~lWdl~~~~~~~~~~-h~~~V~  432 (519)
                      ...++.+..+.+|+....     .......|...+..+.|+|.+ .+++++  .|++|+|||+++++++..+. |...|+
T Consensus       214 ~~~~~~~~~i~lwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~  288 (318)
T 4ggc_A          214 TGGGTSDRHIRIWNVCSG-----ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL  288 (318)
T ss_dssp             EEECTTTCEEEEEETTTC-----CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EEecCCCCEEEEEecccc-----cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence            234555666777765442     234445678889999999998 665544  79999999999999999997 999999


Q ss_pred             EEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          433 SVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       433 ~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      +|+|+| ++++|++|+.||+|+|||+.+.
T Consensus       289 ~l~~sp-dg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          289 SLTMSP-DGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEECT-TSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEEcC-CCCEEEEEecCCeEEEEECCCC
Confidence            999999 9999999999999999999764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.90  E-value=2.8e-21  Score=196.45  Aligned_cols=229  Identities=13%  Similarity=0.153  Sum_probs=178.6

Q ss_pred             CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCeeeceeeccC
Q 010037          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQD  326 (519)
Q Consensus       248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~~~~~~~~~  326 (519)
                      .++++++.++.|++|++.....       .+.+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++....+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-------TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-------EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence            4678899999999999875432       22455554 58999999999977 677799999999999999887776654


Q ss_pred             CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE-EE
Q 010037          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LS  404 (519)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L-~s  404 (519)
                       .+..+.+.++....+               +.+..++.+.+|+....    +.+..+. +...+.+++|+|++ .| ++
T Consensus        75 -~v~~~~~spdg~~l~---------------~~~~~~~~v~v~d~~~~----~~~~~~~-~~~~~~~~~~s~dg~~l~~~  133 (391)
T 1l0q_A           75 -SPQGVAVSPDGKQVY---------------VTNMASSTLSVIDTTSN----TVAGTVK-TGKSPLGLALSPDGKKLYVT  133 (391)
T ss_dssp             -SEEEEEECTTSSEEE---------------EEETTTTEEEEEETTTT----EEEEEEE-CSSSEEEEEECTTSSEEEEE
T ss_pred             -CccceEECCCCCEEE---------------EEECCCCEEEEEECCCC----eEEEEEe-CCCCcceEEECCCCCEEEEE
Confidence             455555555432111               12333456666765542    2234444 34578999999999 55 78


Q ss_pred             EeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC
Q 010037          405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (519)
Q Consensus       405 gs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~  483 (519)
                      ++.|+.|++||+.+++.+..+.....+.+++|+| +++++ ++++.++.|++||+++++.+....+...+.+++|+|+|+
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~  212 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT  212 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS
T ss_pred             eCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCC
Confidence            8889999999999999999998777889999999 78776 677889999999999999887777788899999999999


Q ss_pred             EEEEEe---cCCeEEEEECCCCeeee
Q 010037          484 GGIVGT---MTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       484 ~l~sgs---~dg~v~iwdl~~~~l~~  506 (519)
                      +|++++   .++.|++||+.+++...
T Consensus       213 ~l~~~~~~~~~~~v~~~d~~~~~~~~  238 (391)
T 1l0q_A          213 KAYVTNVDKYFNTVSMIDTGTNKITA  238 (391)
T ss_dssp             EEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred             EEEEEecCcCCCcEEEEECCCCeEEE
Confidence            999988   68999999999886543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.90  E-value=5.2e-22  Score=198.86  Aligned_cols=209  Identities=20%  Similarity=0.275  Sum_probs=161.2

Q ss_pred             cceeecCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeccc-Ceee-ceeeccCCCCceEEEeecCCCCeEEeeccCCc
Q 010037          277 GQEFLAHEGSILTMKFSLD---GQYLASGGEDGTVRVWKVIE-HERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK  351 (519)
Q Consensus       277 ~~~l~~H~~~I~~l~fspd---g~~LaSgs~Dg~I~iWd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (519)
                      .+.+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+ ..+..+...+.++.|.++..            
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------------   99 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS------------   99 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS------------
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC------------
Confidence            3456789999999999998   69999999999999999987 4444 56666777777777766432            


Q ss_pred             eeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE--cCCC-eEEEEeCCCcEEEEECCCCeEEEEecCC
Q 010037          352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW--SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN  428 (519)
Q Consensus       352 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~  428 (519)
                          ..+.++.++.+.+|+.....     ...+.+|...|.+++|  +|++ +|++++.|+.|++||+++++++..+...
T Consensus       100 ----~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  170 (368)
T 3mmy_A          100 ----KVFTASCDKTAKMWDLSSNQ-----AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP  170 (368)
T ss_dssp             ----EEEEEETTSEEEEEETTTTE-----EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred             ----EEEEEcCCCcEEEEEcCCCC-----ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence                12334556777788765432     3346779999999999  8888 8999999999999999988776665422


Q ss_pred             ------------------------------------------CcEEEEEEeeCCCCE----EEEEeCCCeEEEEEcCCCc
Q 010037          429 ------------------------------------------NYVTSVAFNPVDDNY----FISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       429 ------------------------------------------~~V~~v~fsp~d~~~----l~sgs~Dg~V~iwd~~~~~  462 (519)
                                                                ..+.++++.+ +...    +++|+.||.|++||++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~  249 (368)
T 3mmy_A          171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPN  249 (368)
T ss_dssp             SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred             CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCC
Confidence                                                      3345555555 3333    9999999999999998863


Q ss_pred             ---E-EeeccCCC------------ceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          463 ---V-VDYTDIRE------------IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       463 ---~-~~~~~~~~------------~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                         . ..+..|..            .|++++|+|++++|++|+.||.|++||+.++++...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  310 (368)
T 3mmy_A          250 PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT  310 (368)
T ss_dssp             HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence               2 23444544            799999999999999999999999999998876543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.89  E-value=8.4e-22  Score=203.20  Aligned_cols=212  Identities=20%  Similarity=0.246  Sum_probs=161.2

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccc----------------------------------cccccce
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------SLYTGQE  279 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~----------------------------------~~~~~~~  279 (519)
                      |.+.|.+++|+|+|++||+|+.||.|+||++........                                  .......
T Consensus       146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~  225 (420)
T 4gga_A          146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT  225 (420)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEE
Confidence            345577899999999999999999999999875432110                                  0111235


Q ss_pred             eecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee----ceeeccCCCCceEEEeecCCCCeEEeeccCCceeee
Q 010037          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (519)
Q Consensus       280 l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (519)
                      +.+|...+..+.|+|++++|++++.|+.|++|++.+++..    .....+...+..+.+.+.....++            
T Consensus       226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la------------  293 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA------------  293 (420)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE------------
T ss_pred             ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE------------
Confidence            6789999999999999999999999999999999876532    233344444555555554443332            


Q ss_pred             eeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe--CCCcEEEEECCCCeEEEEec-CCCcE
Q 010037          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYV  431 (519)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs--~Dg~V~lWdl~~~~~~~~~~-h~~~V  431 (519)
                       ...++.++.+.+|+....    +.+..+. +...+.++.|+|++ .|++++  .|++|+|||+.+++++..+. |...|
T Consensus       294 -~~~gs~D~~I~iwd~~t~----~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V  367 (420)
T 4gga_A          294 -TGGGTSDRHIRIWNVCSG----ACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV  367 (420)
T ss_dssp             -EEECTTTCEEEEEETTTT----EEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred             -EEeecCCCEEEEEeCCcc----ccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence             234566778888877653    3344444 44678999999998 666654  79999999999999999987 99999


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       432 ~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      ++|+|+| ++.+|++|+.|++|+|||+......
T Consensus       368 ~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          368 LSLTMSP-DGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             EEEEECT-TSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             EEEEEcC-CCCEEEEEecCCeEEEEECCCCCcc
Confidence            9999999 9999999999999999999875544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.9e-22  Score=223.66  Aligned_cols=209  Identities=18%  Similarity=0.246  Sum_probs=167.0

Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc--cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeee
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (519)
                      ..+.+|.++|++++|+|++++|++|+.||.|+||++.  ++.....+..+...+.++.|.+......             
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~-------------   69 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI-------------   69 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSE-------------
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCE-------------
Confidence            3578999999999999999999999999999999998  5566667777777777777765532222             


Q ss_pred             eeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCe---EEEEecCCC
Q 010037          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR---CLRVFSHNN  429 (519)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~-~L~sgs~Dg~V~lWdl~~~~---~~~~~~h~~  429 (519)
                       .+.++.++.+.+|+.....  ...+..+.+|...|.+++|+|+  + .|++|+.||+|++||++++.   ......|..
T Consensus        70 -l~s~s~Dg~I~vwd~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~  146 (753)
T 3jro_A           70 -LASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (753)
T ss_dssp             -EEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred             -EEEEeCCCeEEEEECCCCc--ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence             2344556667777654321  1246677889999999999998  7 99999999999999998873   233335999


Q ss_pred             cEEEEEEeeC------------CCCEEEEEeCCCeEEEEEcCCCc----EE-eeccCCCceEEEEEeeC---CCEEEEEe
Q 010037          430 YVTSVAFNPV------------DDNYFISGSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPD---GKGGIVGT  489 (519)
Q Consensus       430 ~V~~v~fsp~------------d~~~l~sgs~Dg~V~iwd~~~~~----~~-~~~~~~~~V~~v~~spd---g~~l~sgs  489 (519)
                      .|++++|+|.            ++.+|++|+.||.|++||++++.    +. .+..|...|++++|+|+   +++|++|+
T Consensus       147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            9999999994            48899999999999999998763    33 46789999999999999   89999999


Q ss_pred             cCCeEEEEECCCC
Q 010037          490 MTGNCRFYDIKGM  502 (519)
Q Consensus       490 ~dg~v~iwdl~~~  502 (519)
                      .||.|++||+.++
T Consensus       227 ~Dg~I~iwd~~~~  239 (753)
T 3jro_A          227 QDRTCIIWTQDNE  239 (753)
T ss_dssp             SSSCEEEEEESSS
T ss_pred             cCCEEEEecCCCC
Confidence            9999999999876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.9e-22  Score=209.05  Aligned_cols=223  Identities=8%  Similarity=0.052  Sum_probs=167.1

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCC-----CEEEEEEccCCCEEEEEeCCCcEE
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-----SILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~-----~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+.+.+++|+|+|.+||+++.||.|+||+...         ....+. |..     .|.+++|||||++||+|+.||+|+
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE---------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            46677899999999999999999999999543         112234 554     599999999999999999999999


Q ss_pred             EEecccCee-------eceee----ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037          310 VWKVIEHER-------LDGFD----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (519)
Q Consensus       310 iWd~~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (519)
                      |||+.++..       +..+.    .+...+.++.|.+++   +               +.++.+..+.+|+....... 
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---L---------------aass~D~tVrlWd~~~~~~~-  215 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---L---------------VAALSNNSVFSMTVSASSHQ-  215 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---E---------------EEEETTCCEEEECCCSSSSC-
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---E---------------EEEeCCCeEEEEECCCCccc-
Confidence            999988753       34442    233455566666543   2               23445677888876543311 


Q ss_pred             cceeEe-eccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE-EEEecCCCcEEEEEE--eeCCCCEEEEEeCCCeEE
Q 010037          379 KPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC-LRVFSHNNYVTSVAF--NPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       379 ~~~~~~-~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~-~~~~~h~~~V~~v~f--sp~d~~~l~sgs~Dg~V~  454 (519)
                      ...+++ .+|...|.+++|+ ++.|++++ +++|++||+.+++. ...+.|...|+.++|  +| ++..+++++.||+ +
T Consensus       216 ~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-k  291 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-K  291 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-E
T ss_pred             cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-E
Confidence            123456 4788999999999 44888887 69999999999988 444489999999999  99 8999999999999 9


Q ss_pred             EEEcCCCc------E-----------------EeeccCCCceEEEEEeeCCCEEEEEec
Q 010037          455 IWEVRRCQ------V-----------------VDYTDIREIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       455 iwd~~~~~------~-----------------~~~~~~~~~V~~v~~spdg~~l~sgs~  490 (519)
                      +|....-.      .                 +....+...|++++|+|||+.+|+++.
T Consensus       292 lw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          292 VLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence            99874211      0                 111112335899999999999998873

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=6.8e-22  Score=202.26  Aligned_cols=162  Identities=19%  Similarity=0.233  Sum_probs=123.3

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCee
Q 010037          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (519)
                      .+....+.+++.+||+|+.|++|+|||+.++.....                                            
T Consensus        91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~--------------------------------------------  126 (393)
T 4gq1_A           91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ--------------------------------------------  126 (393)
T ss_dssp             ------CCEEEEEEEEEETTSCEEEEEEETTEEEEE--------------------------------------------
T ss_pred             CcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee--------------------------------------------
Confidence            333344445667899999999999999987764221                                            


Q ss_pred             EEEeCCccccccccceeEeeccCCCeeEEEEcC--------CC-eEEEEeCCCcEEEEECCCCeEEE-EecCCCcEEEEE
Q 010037          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK--------NG-FLLSSSADKTVRLWQVGIDRCLR-VFSHNNYVTSVA  435 (519)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--------~~-~L~sgs~Dg~V~lWdl~~~~~~~-~~~h~~~V~~v~  435 (519)
                                   .++..+.+|.+.|++++|+|        ++ +|++++.|++|+|||+.++.++. .+.|...|.+++
T Consensus       127 -------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~  193 (393)
T 4gq1_A          127 -------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQ  193 (393)
T ss_dssp             -------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEE
T ss_pred             -------------eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEE
Confidence                         11334678999999999998        56 99999999999999998876654 456999999999


Q ss_pred             EeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--------------------------eccCCCceEEEEEe-eCCCEEEEE
Q 010037          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------------------------YTDIREIVSAVCYC-PDGKGGIVG  488 (519)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--------------------------~~~~~~~V~~v~~s-pdg~~l~sg  488 (519)
                      |+|.+.++|++|+.|++|++||+++++...                          ...|...+.++.|+ |||+.|+++
T Consensus       194 ~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~  273 (393)
T 4gq1_A          194 FRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM  273 (393)
T ss_dssp             EETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE
T ss_pred             ECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE
Confidence            999444689999999999999998865321                          23466778899987 799999999


Q ss_pred             ecCCeEEEEECCCCee
Q 010037          489 TMTGNCRFYDIKGMQI  504 (519)
Q Consensus       489 s~dg~v~iwdl~~~~l  504 (519)
                      +.|+.+++||+.+++.
T Consensus       274 s~d~~i~vwd~~~~~~  289 (393)
T 4gq1_A          274 CKSGAWLRWNLFANND  289 (393)
T ss_dssp             CTTSEEEEEEC-----
T ss_pred             eCCCCEEEEECccCCC
Confidence            9999999999987653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=2.8e-20  Score=191.81  Aligned_cols=207  Identities=13%  Similarity=0.109  Sum_probs=166.2

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCC---eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCC
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGED  305 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg---~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~D  305 (519)
                      .+..+...+.+++|+|+|++|++++.++   .|++|++..+..        ..+..|.+.+.+++|+|||++|+ +++.|
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--------~~l~~~~~~~~~~~~spdg~~la~~~~~~  244 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAFSPDGSKLAFALSKT  244 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------EEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--------EEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence            3455666777899999999999998875   999999975432        23567888999999999999888 66666


Q ss_pred             Cc--EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          306 GT--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       306 g~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      +.  |++||+.+++.                                                               ..
T Consensus       245 g~~~i~~~d~~~~~~---------------------------------------------------------------~~  261 (415)
T 2hqs_A          245 GSLNLYVMDLASGQI---------------------------------------------------------------RQ  261 (415)
T ss_dssp             SSCEEEEEETTTCCE---------------------------------------------------------------EE
T ss_pred             CCceEEEEECCCCCE---------------------------------------------------------------Ee
Confidence            65  88899876542                                                               22


Q ss_pred             eeccCCCeeEEEEcCCC-eEEEEeC-CC--cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CeEEEE
Q 010037          384 FQGHSSEVLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIW  456 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp~~-~L~sgs~-Dg--~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~iw  456 (519)
                      +..|...+.+++|+|+| +|++++. ++  .|.+||+.+++......+...+.+++|+| ++++|++++.+   ..|++|
T Consensus       262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEE
T ss_pred             CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEE
Confidence            34567789999999999 7887776 44  68888999887655445778999999999 99999888764   589999


Q ss_pred             EcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCC---eEEEEECCCCeeeeccc
Q 010037          457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKGMQIFDLST  509 (519)
Q Consensus       457 d~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg---~v~iwdl~~~~l~~~~~  509 (519)
                      |+.+++...+..+. .+.+++|+|||++|++++.++   .|++||+.++.+..+..
T Consensus       341 d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          341 DLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             ETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             ECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence            99999887666654 899999999999999988877   79999998877766643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.86  E-value=4.6e-20  Score=181.38  Aligned_cols=178  Identities=13%  Similarity=0.037  Sum_probs=124.9

Q ss_pred             CCEEEEEEccC----CCEEEEEeCCCcEEEEecccCeeecee-eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeec
Q 010037          285 GSILTMKFSLD----GQYLASGGEDGTVRVWKVIEHERLDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (519)
Q Consensus       285 ~~I~~l~fspd----g~~LaSgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (519)
                      ..|+.|+|+||    ++++++++.+  +++|++.+++.+... ..+.                                 
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d---------------------------------  156 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSD---------------------------------  156 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTT---------------------------------
T ss_pred             cceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCC---------------------------------
Confidence            36777788888    8888888754  788888766644331 1112                                 


Q ss_pred             cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC---CC-eEEEEeCCCcEEEEECCCCeEEEEec-C---CCcE
Q 010037          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK---NG-FLLSSSADKTVRLWQVGIDRCLRVFS-H---NNYV  431 (519)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h---~~~V  431 (519)
                          ..+.+|...   ..++.+..+.+|...+..++|++   ++ +|++++.|++|+|||+.++++++++. |   ...+
T Consensus       157 ----~~V~~~~~s---~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v  229 (356)
T 2w18_A          157 ----QQVEVMTFA---EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASV  229 (356)
T ss_dssp             ----CEEEEEEEC---TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCC
T ss_pred             ----CcEEEEEEC---CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeee
Confidence                122222110   01233556778999999999999   55 99999999999999999999999996 3   3467


Q ss_pred             EEEEEeeCCCCEE------------EEEeCCCeEEEEEcCCCcEEee------ccCCCceEEEEEeeCCCEEEEEecCCe
Q 010037          432 TSVAFNPVDDNYF------------ISGSIDGKVRIWEVRRCQVVDY------TDIREIVSAVCYCPDGKGGIVGTMTGN  493 (519)
Q Consensus       432 ~~v~fsp~d~~~l------------~sgs~Dg~V~iwd~~~~~~~~~------~~~~~~V~~v~~spdg~~l~sgs~dg~  493 (519)
                      .+++|+| ++.++            ++|+.|++|++||..+++.+..      .+|...+.  ..+.++.++++|+.||+
T Consensus       230 ~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgT  306 (356)
T 2w18_A          230 CHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGT  306 (356)
T ss_dssp             EEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSC
T ss_pred             EEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCc
Confidence            8889999 88876            6688999999999999987642      24444444  33445889999999999


Q ss_pred             EEEEECCCCeeeec
Q 010037          494 CRFYDIKGMQIFDL  507 (519)
Q Consensus       494 v~iwdl~~~~l~~~  507 (519)
                      |+|||+.++++.+.
T Consensus       307 IkIWDl~tGk~l~t  320 (356)
T 2w18_A          307 IAIWDLLLGQCTAL  320 (356)
T ss_dssp             EEEEETTTCSEEEE
T ss_pred             EEEEECCCCcEEEE
Confidence            99999999886553

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=1.2e-20  Score=195.60  Aligned_cols=211  Identities=15%  Similarity=0.090  Sum_probs=154.3

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccc---------cccccccceeecCCCCEEEEEEccCCCEEE----EEe
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE---------LSSLYTGQEFLAHEGSILTMKFSLDGQYLA----SGG  303 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~---------~~~~~~~~~l~~H~~~I~~l~fspdg~~La----Sgs  303 (519)
                      ..+.+++++++.++++|+.++ |+||+.......         .... .......|...|.+++|+|+|++||    +|+
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDK-VQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEEC-CCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCccccccc-CccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            456689999999999999888 899876422110         0000 1111234677899999999999999    788


Q ss_pred             CCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      .|+.|+|||+.++.....     .....                                              ...+..
T Consensus       116 ~d~~v~iwd~~~~~~~~~-----~~~~~----------------------------------------------~~~~~~  144 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAK-----QQKRP----------------------------------------------FAYHKL  144 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTC-----SSCCC----------------------------------------------SEEEEC
T ss_pred             CCceEEEEEccccccCCc-----CCcce----------------------------------------------eeeeec
Confidence            999999999865411000     00000                                              001234


Q ss_pred             eeccCCCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          384 FQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      +.+|...|.+++|+|+ + +|++++.|++|++||++++..+... .|...|++++|+| ++++|++|+.||+|++||++ 
T Consensus       145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-  222 (434)
T 2oit_A          145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-  222 (434)
T ss_dssp             CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-
T ss_pred             cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-
Confidence            5679999999999998 5 9999999999999999998765443 4889999999999 89999999999999999998 


Q ss_pred             CcEE-eecc-------CCCceEEEEEeeCCCEEEEE-ecCC------eEEEEECCCC
Q 010037          461 CQVV-DYTD-------IREIVSAVCYCPDGKGGIVG-TMTG------NCRFYDIKGM  502 (519)
Q Consensus       461 ~~~~-~~~~-------~~~~V~~v~~spdg~~l~sg-s~dg------~v~iwdl~~~  502 (519)
                      ++.. ....       |...|.+++|++++.++++. ..+|      .+++|++...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          223 LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            3333 2222       23379999999998877653 3443      3899999854

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.84  E-value=2.6e-19  Score=184.53  Aligned_cols=190  Identities=13%  Similarity=0.040  Sum_probs=153.6

Q ss_pred             CCeEEeeecC------CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEecccCe
Q 010037          247 DHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIEHE  317 (519)
Q Consensus       247 g~~lasgs~d------g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg---~I~iWd~~~~~  317 (519)
                      +..++.++.+      ++|++||+....        .+.+.+|...|.+++|+|||++|++++.|+   .|++||+.+++
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~  214 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA  214 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence            5566665554      799999986322        245778999999999999999999999885   99999998765


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      ..                                                               .+..|...+.+++|+
T Consensus       215 ~~---------------------------------------------------------------~l~~~~~~~~~~~~s  231 (415)
T 2hqs_A          215 VR---------------------------------------------------------------QVASFPRHNGAPAFS  231 (415)
T ss_dssp             EE---------------------------------------------------------------EEECCSSCEEEEEEC
T ss_pred             EE---------------------------------------------------------------EeecCCCcccCEEEc
Confidence            31                                                               234566789999999


Q ss_pred             CCC-eEE-EEeCCCc--EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCcEEeeccCC
Q 010037          398 KNG-FLL-SSSADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIR  470 (519)
Q Consensus       398 p~~-~L~-sgs~Dg~--V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~  470 (519)
                      |+| .|+ +++.++.  |++||+.++++.....|...+.+++|+| ++++|++++. ++  .|++||+.+++...+..+.
T Consensus       232 pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~  310 (415)
T 2hqs_A          232 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG  310 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred             CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC
Confidence            999 666 6666655  9999999998866666888999999999 9999988886 44  7888899988877666777


Q ss_pred             CceEEEEEeeCCCEEEEEecC---CeEEEEECCCCeeeecc
Q 010037          471 EIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       471 ~~V~~v~~spdg~~l~sgs~d---g~v~iwdl~~~~l~~~~  508 (519)
                      ..+..++|+|||++|++++.+   +.|++||+.++++..+.
T Consensus       311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~  351 (415)
T 2hqs_A          311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS  351 (415)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC
T ss_pred             CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEec
Confidence            889999999999999988865   58999999988776554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.80  E-value=9.3e-18  Score=178.79  Aligned_cols=259  Identities=10%  Similarity=0.039  Sum_probs=180.1

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeC--CccccccccccccceeecCCCCEEEEEEcc----CCCEEEEEeC-CCcEEE
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPV--KKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGGE-DGTVRV  310 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~--~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~LaSgs~-Dg~I~i  310 (519)
                      +..++|+|+|++|++++.++.|++||+  ....       ...++. +...+..++|+|    ||++|++++. +++|.|
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v  252 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI  252 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence            346889999999999999999999999  4322       223444 345679999999    9999999885 899999


Q ss_pred             EecccCeeeceeeccC----------C-CCceEEEeecC---------CCCeEEeeccCCceee----------------
Q 010037          311 WKVIEHERLDGFDVQD----------T-DPSCLYFTINH---------LSQLIPIDVDKEKIDK----------------  354 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~----------~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~~----------------  354 (519)
                      ||..+++.+..+....          . .+..+.+.+..         ...+..+.........                
T Consensus       253 ~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~s  332 (543)
T 1nir_A          253 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWD  332 (543)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEEC
T ss_pred             EeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceEC
Confidence            9999998887776421          1 22333443322         2223333322211000                


Q ss_pred             ----eeeeccCCCeeEEEeCCccccccccceeEeec----cCCCeeEEEEcCCC--eEEEEe-CCCcEEEEECCC-----
Q 010037          355 ----TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG----HSSEVLDLSWSKNG--FLLSSS-ADKTVRLWQVGI-----  418 (519)
Q Consensus       355 ----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~l~~sp~~--~L~sgs-~Dg~V~lWdl~~-----  418 (519)
                          ........+..+.+|+.....    .+..+..    |.+....+ ++|++  .++++. .|++|.|||+.+     
T Consensus       333 pdg~~l~va~~~~~~v~v~D~~tg~----l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~  407 (543)
T 1nir_A          333 SSHRYFMTAANNSNKVAVIDSKDRR----LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ  407 (543)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred             CCCCEEEEEecCCCeEEEEECCCCe----EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence                011122234455555554432    3344442    55443333 46774  666665 689999999998     


Q ss_pred             --CeEEEEec-CCCcEEEEEEeeCCCCEEEEEe-------CCCeEEEEEcCCCcEE-ee---------ccCCCceEEEEE
Q 010037          419 --DRCLRVFS-HNNYVTSVAFNPVDDNYFISGS-------IDGKVRIWEVRRCQVV-DY---------TDIREIVSAVCY  478 (519)
Q Consensus       419 --~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs-------~Dg~V~iwd~~~~~~~-~~---------~~~~~~V~~v~~  478 (519)
                        .++++++. |...+..|+|+| ++++|++++       .+++|.|||+.+.+.. ..         ..+...+..+.|
T Consensus       408 ~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  486 (543)
T 1nir_A          408 YAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY  486 (543)
T ss_dssp             TBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred             hcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence              88999987 778889999999 999999987       2679999999988765 32         245678999999


Q ss_pred             eeCCCEEEEEe-----cCCeEEEEECCCCeeeecccc
Q 010037          479 CPDGKGGIVGT-----MTGNCRFYDIKGMQIFDLSTT  510 (519)
Q Consensus       479 spdg~~l~sgs-----~dg~v~iwdl~~~~l~~~~~~  510 (519)
                      +|+|+.|+++.     .++.|.|||.+++++...-..
T Consensus       487 ~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  523 (543)
T 1nir_A          487 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  523 (543)
T ss_dssp             CSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             CCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence            99999999774     379999999999998765443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=3.8e-17  Score=157.74  Aligned_cols=226  Identities=13%  Similarity=0.111  Sum_probs=158.2

Q ss_pred             eeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc-CeeeceeeccC-CCC
Q 010037          252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDVQD-TDP  329 (519)
Q Consensus       252 sgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~-~~~~~~~~~~~-~~~  329 (519)
                      .++.++.|++|++......        .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+. ..+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~--------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~   87 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR--------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICN   87 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE--------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred             CCCcceeEEEEeCCCCcee--------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccc
Confidence            3567899999998754421        3556889999999999999999986 78999999988 76554443332 344


Q ss_pred             ceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEE-EEeC
Q 010037          330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSA  407 (519)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~-sgs~  407 (519)
                      ..+.|.++....++.. ...           .....+..++...     .....+..+ ..+..++|+|++ +|+ ++..
T Consensus        88 ~~~~~spdg~~l~~~~-~~~-----------~~~~~l~~~~~~~-----~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~  149 (297)
T 2ojh_A           88 NDHGISPDGALYAISD-KVE-----------FGKSAIYLLPSTG-----GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIR  149 (297)
T ss_dssp             SCCEECTTSSEEEEEE-CTT-----------TSSCEEEEEETTC-----CCCEECCSS-SSEEEEEECTTSSEEEEEEEE
T ss_pred             cceEECCCCCEEEEEE-eCC-----------CCcceEEEEECCC-----CceEEeecC-CCccceEECCCCCEEEEEECC
Confidence            5566666543222211 111           0122233332211     112333333 348899999999 555 7888


Q ss_pred             CCcEEEEEC--CCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcC--CCcEEeeccCCCceEEEEEeeCC
Q 010037          408 DKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDG  482 (519)
Q Consensus       408 Dg~V~lWdl--~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~--~~~~~~~~~~~~~V~~v~~spdg  482 (519)
                      ++.++||++  .++.......+...+.+++|+| ++++|+.++ .++.++||++.  .+....+..+...+..++|+|+|
T Consensus       150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  228 (297)
T 2ojh_A          150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG  228 (297)
T ss_dssp             TTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred             CCceEEEEEECCCCcceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence            999999985  4556555556888999999999 888877666 58999999875  44555666777889999999999


Q ss_pred             CEEEEEecC-----------CeEEEEECCCCeee
Q 010037          483 KGGIVGTMT-----------GNCRFYDIKGMQIF  505 (519)
Q Consensus       483 ~~l~sgs~d-----------g~v~iwdl~~~~l~  505 (519)
                      ++|++++.+           +.|++||+.+++..
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  262 (297)
T 2ojh_A          229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE  262 (297)
T ss_dssp             SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred             CEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence            999988876           56999999987653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.78  E-value=6.6e-17  Score=160.18  Aligned_cols=248  Identities=12%  Similarity=0.135  Sum_probs=156.0

Q ss_pred             ecccceeecCCCCeEEeeecC-CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEec
Q 010037          236 DRHGSATLKPGDHELTLGQRM-RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKV  313 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~d-g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~  313 (519)
                      ..+.+++|+|++++|++++.+ +.|++|++......+.   ....+..+. .+..++|+|+|++|++++. ++.|.+||+
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            345568999999999888876 9999999872211111   112233333 7889999999998877665 889999999


Q ss_pred             c---cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc-cccccccee--Eeec-
Q 010037          314 I---EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLLEKPLH--EFQG-  386 (519)
Q Consensus       314 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~--~~~~-  386 (519)
                      .   ..+....+... ..+..+.+.++... ++...              ..+..+.+|+... ..+.  .+.  .+.. 
T Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~-l~~~~--------------~~~~~v~~~d~~~~~~~~--~~~~~~~~~~  175 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGL-DGCHSANISPDNRT-LWVPA--------------LKQDRICLFTVSDDGHLV--AQDPAEVTTV  175 (343)
T ss_dssp             ETTEEEEEEEEECCC-TTBCCCEECTTSSE-EEEEE--------------GGGTEEEEEEECTTSCEE--EEEEEEEECS
T ss_pred             CCCccccccccccCC-CCceEEEECCCCCE-EEEec--------------CCCCEEEEEEecCCCcee--eecccccccC
Confidence            4   33333333322 22444555544322 22111              1223344443322 1110  011  2222 


Q ss_pred             cCCCeeEEEEcCCC-eEEEE-eCCCcEEEEECCC--CeE--EEEec-------CCCcEEEEEEeeCCCCEEE-EEeCCCe
Q 010037          387 HSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGI--DRC--LRVFS-------HNNYVTSVAFNPVDDNYFI-SGSIDGK  452 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sg-s~Dg~V~lWdl~~--~~~--~~~~~-------h~~~V~~v~fsp~d~~~l~-sgs~Dg~  452 (519)
                      ....+.+++|+|++ +|+.+ ..++.|.+|++..  ++.  +..+.       ....+..++|+| ++++|+ ++..++.
T Consensus       176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~  254 (343)
T 1ri6_A          176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASL  254 (343)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTE
T ss_pred             CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCE
Confidence            34578899999999 56544 5889999999953  332  22222       134677899999 887776 4557999


Q ss_pred             EEEEEcC--CC--cEEeeccCCCceEEEEEeeCCCEEEEEe-cCCeEEEE--ECCCCeeee
Q 010037          453 VRIWEVR--RC--QVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFY--DIKGMQIFD  506 (519)
Q Consensus       453 V~iwd~~--~~--~~~~~~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iw--dl~~~~l~~  506 (519)
                      |++||+.  ++  +.+........+..++|+|+|++|++++ .++.|.+|  |..++++..
T Consensus       255 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~  315 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE  315 (343)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence            9999998  33  3333333334488999999999988887 57999999  555665543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.78  E-value=1.6e-16  Score=158.43  Aligned_cols=242  Identities=12%  Similarity=0.074  Sum_probs=172.4

Q ss_pred             cccceeecCCCCeEEeeec-------CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCCcE
Q 010037          237 RHGSATLKPGDHELTLGQR-------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTV  308 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~-------dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~I  308 (519)
                      ....++++|+++++++++.       ++.|.+||.......       ..+. +...+..++|+|+|++|+ +...++.|
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-------~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-------QAIH-NDLKPFGATINNTTQTLWFGNTVNSAV  113 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-------EEEE-ESSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-------EEEe-cCCCcceEEECCCCCEEEEEecCCCEE
Confidence            3446899999998888763       678999998754421       1222 234477899999999655 45557999


Q ss_pred             EEEecccCeeeceeeccCCC---------CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          309 RVWKVIEHERLDGFDVQDTD---------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                      .+||+.+++....+..+...         +..+.+.++... ++...             ...+..+.+|+....    +
T Consensus       114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~-------------~~~~~~i~~~d~~~~----~  175 (353)
T 3vgz_A          114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT-VYISG-------------IGKESVIWVVDGGNI----K  175 (353)
T ss_dssp             EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE-EEEEE-------------ESSSCEEEEEETTTT----E
T ss_pred             EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE-EEEEe-------------cCCCceEEEEcCCCC----c
Confidence            99999999887777664322         233444443321 11111             122445566655432    2


Q ss_pred             ceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeC-CCe
Q 010037          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSI-DGK  452 (519)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~-Dg~  452 (519)
                      .+..+..+...+.+++|+|++ +|++++.++.|.+||+.+++.+..+.     +...+..++|+| +++++++++. ++.
T Consensus       176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~  254 (353)
T 3vgz_A          176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAE  254 (353)
T ss_dssp             EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSE
T ss_pred             eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCE
Confidence            344455456668899999999 89999999999999999999888775     355788999999 8887666654 599


Q ss_pred             EEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCCeeee
Q 010037          453 VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       453 V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~~l~~  506 (519)
                      |.+||+.+++.+........ ..++|+|+|++++++. .++.|.+||+.++++..
T Consensus       255 v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          255 VLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK  308 (353)
T ss_dssp             EEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            99999999988754443333 5699999999766655 68999999999888654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=1.3e-17  Score=172.74  Aligned_cols=201  Identities=15%  Similarity=0.139  Sum_probs=145.3

Q ss_pred             ecccceeecCCCCeEE----eeecCCeEEEeeCCcccc----ccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCC
Q 010037          236 DRHGSATLKPGDHELT----LGQRMRRVRVHPVKKQSR----ELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDG  306 (519)
Q Consensus       236 ~~~~~~~~sp~g~~la----sgs~dg~I~vw~~~~~~~----~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg  306 (519)
                      ..+.+++|+|++++|+    +|+.|+.|+||++.....    ....+.....+.+|...|.+++|+|+ +.+|++++.||
T Consensus        93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence            4567799999999999    789999999999865310    00111223456789999999999997 88999999999


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      +|++||+.++..                                                              +....+
T Consensus       173 ~v~iwD~~~~~~--------------------------------------------------------------~~~~~~  190 (434)
T 2oit_A          173 SIAVLQVTETVK--------------------------------------------------------------VCATLP  190 (434)
T ss_dssp             CEEEEEESSSEE--------------------------------------------------------------EEEEEC
T ss_pred             eEEEEEcCCCcc--------------------------------------------------------------eeeccC
Confidence            999999976632                                                              112345


Q ss_pred             cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-C-------CCcEEEEEEeeCCCCEEEE-EeCCC-----
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-H-------NNYVTSVAFNPVDDNYFIS-GSIDG-----  451 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h-------~~~V~~v~fsp~d~~~l~s-gs~Dg-----  451 (519)
                      |...|.+++|+|+| +|++|+.|++|++||++ ++....+. |       ...|.+++|++ ++.++++ ...||     
T Consensus       191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~  268 (434)
T 2oit_A          191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETS  268 (434)
T ss_dssp             GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSC
T ss_pred             CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEEEccCCCccCCC
Confidence            78899999999999 99999999999999998 55555543 2       23899999999 7766654 33443     


Q ss_pred             -eEEEEEcCCCc-----E-Eeec-------cCCCceEEEEEeeCCCEEEEEec-CCeEEEEECC
Q 010037          452 -KVRIWEVRRCQ-----V-VDYT-------DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK  500 (519)
Q Consensus       452 -~V~iwd~~~~~-----~-~~~~-------~~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~  500 (519)
                       .+++|++++..     . ..+.       ..+.+...+.+-++.+++++++. .+.|.|....
T Consensus       269 ~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          269 PDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             CceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence             39999998652     1 1111       22333344555688888777665 3446666643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.77  E-value=6e-17  Score=160.40  Aligned_cols=245  Identities=9%  Similarity=0.123  Sum_probs=164.4

Q ss_pred             ceeecCCCCeEEeeec-CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeccc
Q 010037          240 SATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIE  315 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~-dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg---~I~iWd~~~  315 (519)
                      .++|+|+++++++++. ++.|.+|+.......      ...+..+..++.+++|+|+|++|+++..++   .|.+||+.+
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCE------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            6899999997766555 899999998754421      234556666666699999999999555553   899999999


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc-ccccceeEeeccCCCeeEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-LLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~l  394 (519)
                      ++.+..+.... .+..+.+.++... ++........             .+.+|+...-. +.... .....+...+..+
T Consensus       118 ~~~~~~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~-------------~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~  181 (331)
T 3u4y_A          118 NKFISTIPIPY-DAVGIAISPNGNG-LILIDRSSAN-------------TVRRFKIDADGVLFDTG-QEFISGGTRPFNI  181 (331)
T ss_dssp             TEEEEEEECCT-TEEEEEECTTSSC-EEEEEETTTT-------------EEEEEEECTTCCEEEEE-EEEECSSSSEEEE
T ss_pred             CCeEEEEECCC-CccceEECCCCCE-EEEEecCCCc-------------eEEEEEECCCCcEeecC-CccccCCCCccce
Confidence            98877665533 2355566555432 3332222222             02222111000 00000 1112344568999


Q ss_pred             EEcCCC-eEE-EEeCCCcEEEEECCCCeE---EEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcE--Ee-
Q 010037          395 SWSKNG-FLL-SSSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQV--VD-  465 (519)
Q Consensus       395 ~~sp~~-~L~-sgs~Dg~V~lWdl~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~--~~-  465 (519)
                      +|+|++ +|+ ++..++.|++||+.+++.   +..+.....+..++|+| ++++++++. .++.|.+||+.++++  +. 
T Consensus       182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~  260 (331)
T 3u4y_A          182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKS  260 (331)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecc
Confidence            999999 554 455789999999999887   77777778889999999 898766554 578899999999877  21 


Q ss_pred             ecc----CC---CceEEEEEeeCCCEEEEEec-CCeEEEEECCCCeeeec
Q 010037          466 YTD----IR---EIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       466 ~~~----~~---~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~~~l~~~  507 (519)
                      ...    ..   .....++|+|||++|++++. ++.|.+||+.+..+-.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~  310 (331)
T 3u4y_A          261 FGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYV  310 (331)
T ss_dssp             EECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             cccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence            111    11   12356899999998876655 56999999998776444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.77  E-value=1.7e-17  Score=160.28  Aligned_cols=231  Identities=12%  Similarity=0.017  Sum_probs=155.0

Q ss_pred             eEeecccceeecCCCCeEEeeecCCeEEEeeCCc-cccccccccccceeecC-CCCEEEEEEccCCCEEEEEe--CCCcE
Q 010037          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-QSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGG--EDGTV  308 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~-~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~LaSgs--~Dg~I  308 (519)
                      .+...+.+++|+|++++|++++ ++.|++|++.. ....       ..+..| ...|.+++|+|+|++|++++  .++.+
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  110 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-------KVDTGFATICNNDHGISPDGALYAISDKVEFGKS  110 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-------ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred             cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-------EeccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence            3455677899999999999986 88999999976 4322       112334 46789999999999999998  44566


Q ss_pred             EEEecc--cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          309 RVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       309 ~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                      +||.+.  ++. ...+.... ....+.|.++....++....               +..+.+|...   ........+..
T Consensus       111 ~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~---~~~~~~~~~~~  170 (297)
T 2ojh_A          111 AIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMD---IDSGVETRLTH  170 (297)
T ss_dssp             EEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEE---TTTCCEEECCC
T ss_pred             eEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECC---------------CCceEEEEEE---CCCCcceEccc
Confidence            666653  333 22222221 23333444433222211111               1112222211   11123445667


Q ss_pred             cCCCeeEEEEcCCC-eEEEEe-CCCcEEEEECC-CCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC-----------C
Q 010037          387 HSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVG-IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSID-----------G  451 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs-~Dg~V~lWdl~-~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~D-----------g  451 (519)
                      |...+.+++|+|++ .|+.++ .++.++||++. .+..+..+ .|...+.+++|+| ++++|++++.+           +
T Consensus       171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~  249 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDV  249 (297)
T ss_dssp             SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEE
T ss_pred             CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCce
Confidence            88899999999999 666555 58999999886 34444444 4778899999999 99999888765           5


Q ss_pred             eEEEEEcCCCcEE---eeccCCCceEEEEEeeCCCEEEEEecCC
Q 010037          452 KVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTG  492 (519)
Q Consensus       452 ~V~iwd~~~~~~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg  492 (519)
                      .|++||+.+++..   ....+...+..++|+|+|+.|++++.+.
T Consensus       250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            6999999987654   3446778899999999999999887654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.76  E-value=5.5e-17  Score=172.81  Aligned_cols=195  Identities=10%  Similarity=0.072  Sum_probs=153.9

Q ss_pred             eecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec--ccCeee
Q 010037          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV--IEHERL  319 (519)
Q Consensus       242 ~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~--~~~~~~  319 (519)
                      +++|++.++++++.+++|.+||......       .+.+..+.. +..++|+|||++|++++.|++|++||+  .+++.+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCE-------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceE-------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence            5899999999999999999999875432       234552322 899999999999999999999999999  555432


Q ss_pred             ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC-
Q 010037          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-  398 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-  398 (519)
                      ..                                                              +. +...+..++|+| 
T Consensus       216 ~~--------------------------------------------------------------i~-~g~~p~~va~sp~  232 (543)
T 1nir_A          216 AE--------------------------------------------------------------IK-IGIEARSVESSKF  232 (543)
T ss_dssp             EE--------------------------------------------------------------EE-CCSEEEEEEECCS
T ss_pred             EE--------------------------------------------------------------Ee-cCCCcceEEeCCC
Confidence            21                                                              22 234578999999 


Q ss_pred             ---CC-eEEEEe-CCCcEEEEECCCCeEEEEecC------------CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          399 ---NG-FLLSSS-ADKTVRLWQVGIDRCLRVFSH------------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       399 ---~~-~L~sgs-~Dg~V~lWdl~~~~~~~~~~h------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                         +| +|++++ .+++|.|||..++++++.+..            ...+..+.++|.+..++++...+++|.+||+.+.
T Consensus       233 ~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~  312 (543)
T 1nir_A          233 KGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI  312 (543)
T ss_dssp             TTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS
T ss_pred             cCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC
Confidence               98 787777 589999999999999988752            2378999999955556777778999999999886


Q ss_pred             cEEe--eccCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCCeeeec
Q 010037          462 QVVD--YTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       462 ~~~~--~~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~~l~~~  507 (519)
                      +.+.  ...+...+..++|+|+|++|++++ .+++|.+||+.++++...
T Consensus       313 ~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~  361 (543)
T 1nir_A          313 DNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL  361 (543)
T ss_dssp             SSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence            5432  445666788999999999877655 588999999999987653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=8.7e-16  Score=153.39  Aligned_cols=247  Identities=13%  Similarity=0.101  Sum_probs=156.7

Q ss_pred             ecccceeecCCCCeEEeeec---CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-CCCcEEEE
Q 010037          236 DRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVW  311 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~---dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~I~iW  311 (519)
                      .....++|+|+|+ |++++.   ++.|++|++......     ....+..|...+..++|+|+|++|++++ .++.|.+|
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH-----KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            3444589999999 555444   689999998543321     1123445677889999999999998888 68999999


Q ss_pred             eccc-Ce--eeceeeccCC---------CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCc-cccccc
Q 010037          312 KVIE-HE--RLDGFDVQDT---------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VFRLLE  378 (519)
Q Consensus       312 d~~~-~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~  378 (519)
                      ++.. +.  .+..+.....         .+..+.+.++..  ++.....              +..+.+|+.. ...+  
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~~--------------~~~v~~~~~~~~g~~--  175 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDLG--------------SDKVYVYNVSDAGQL--  175 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEETT--------------TTEEEEEEECTTSCE--
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeCC--------------CCEEEEEEECCCCcE--
Confidence            9963 22  2222221111         122344544443  3332222              2233333322 1000  


Q ss_pred             cceeEeecc-CCCeeEEEEcCCC-eEEE-EeCCCcEEEEECCC--CeEE--EEec-CC------CcEEEEEEeeCCCCEE
Q 010037          379 KPLHEFQGH-SSEVLDLSWSKNG-FLLS-SSADKTVRLWQVGI--DRCL--RVFS-HN------NYVTSVAFNPVDDNYF  444 (519)
Q Consensus       379 ~~~~~~~~h-~~~V~~l~~sp~~-~L~s-gs~Dg~V~lWdl~~--~~~~--~~~~-h~------~~V~~v~fsp~d~~~l  444 (519)
                      ..+..+..+ ...+..++|+|+| +|++ +..++.|.+|++..  ++..  ..+. ..      ..+..++|+| ++++|
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l  254 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFL  254 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEE
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEE
Confidence            011122222 2367889999999 5555 56789999999874  5432  2222 22      4689999999 88876


Q ss_pred             -EEEeCCCeEEEEEcCCC---cEE-eeccCCCceEEEEEeeCCCEEEEEecC-CeEEEE--ECCCCeeeec
Q 010037          445 -ISGSIDGKVRIWEVRRC---QVV-DYTDIREIVSAVCYCPDGKGGIVGTMT-GNCRFY--DIKGMQIFDL  507 (519)
Q Consensus       445 -~sgs~Dg~V~iwd~~~~---~~~-~~~~~~~~V~~v~~spdg~~l~sgs~d-g~v~iw--dl~~~~l~~~  507 (519)
                       ++...++.|.+|++...   +.+ ....+...+..++|+|||++|++++.+ +.|.+|  |..++++..+
T Consensus       255 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~  325 (347)
T 3hfq_A          255 YVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL  325 (347)
T ss_dssp             EEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             EEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence             55667899999999732   333 234445668899999999998888764 899999  6677877654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=5.2e-16  Score=154.26  Aligned_cols=249  Identities=9%  Similarity=0.063  Sum_probs=167.0

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCC-CCEEEEEEccCCCEEE-EEeCCCcEEEEecccCee
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~La-Sgs~Dg~I~iWd~~~~~~  318 (519)
                      +++++++.++++++.+++|++||.......       +.+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~   77 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVY-------KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEE-------EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEE-------EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE
Confidence            578899999999999999999998754321       1233222 2577899999998664 555789999999999987


Q ss_pred             eceeeccCC------CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          319 LDGFDVQDT------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       319 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      ...+.....      .+..+.+.++....+.. ......   ...........+.+|+...... .+.+..+. +...+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~-~~~~~~---~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~-~~~~~~  151 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYAT-VNPTQR---LNDHYVVKPPRLEVFSTADGLE-AKPVRTFP-MPRQVY  151 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEE-EEEEEE---CSSCEEECCCEEEEEEGGGGGG-BCCSEEEE-CCSSCC
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEE-cccccc---cccccccCCCeEEEEECCCccc-cceeeecc-CCCccc
Confidence            776664332      14555665554322221 110000   0000001124566666544222 12233333 334689


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCC-------------------------------------------
Q 010037          393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN-------------------------------------------  429 (519)
Q Consensus       393 ~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~-------------------------------------------  429 (519)
                      +++|+|++.+++++  +.|.+||+.+++.+..+....                                           
T Consensus       152 ~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  229 (349)
T 1jmx_B          152 LMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  229 (349)
T ss_dssp             CEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             ceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence            99999999544444  349999999988877664221                                           


Q ss_pred             --------------------------cEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC
Q 010037          430 --------------------------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (519)
Q Consensus       430 --------------------------~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~  483 (519)
                                                .+.+++|+|.++++++++  ++.|.+||+.+++.+........+..++|+|+|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  307 (349)
T 1jmx_B          230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD  307 (349)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSS
T ss_pred             ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCC
Confidence                                      234556667467777777  8899999999998876555556678999999999


Q ss_pred             EEEEEecCCeEEEEECCCCeeee
Q 010037          484 GGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       484 ~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +|++++.++.|++||+.+++++.
T Consensus       308 ~l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          308 KLYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             CEEEESBSSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCeEEEEeccccceee
Confidence            99998889999999999887654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.74  E-value=3.4e-17  Score=180.79  Aligned_cols=200  Identities=13%  Similarity=0.094  Sum_probs=152.7

Q ss_pred             cccceeecCCCCeEEeeec-CC-----eEEEeeCCccccccccccccceeecCC------------------------CC
Q 010037          237 RHGSATLKPGDHELTLGQR-MR-----RVRVHPVKKQSRELSSLYTGQEFLAHE------------------------GS  286 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~-dg-----~I~vw~~~~~~~~~~~~~~~~~l~~H~------------------------~~  286 (519)
                      .+.+++|+|||++|++++. ++     .|++|++..+....       .+..|.                        ..
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL-------LVDSKVVLPGTETLSDEEKARRERQRIAAMTG  110 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE-------EECGGGTC--------------------CCEE
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE-------ccchhhcccccccccchhhhhhhhhhhccccC
Confidence            4556899999999999988 88     99999987654321       111221                        23


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeE
Q 010037          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (519)
Q Consensus       287 I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  366 (519)
                      |.+++|+|||++|++++. +.|++||+.++...                                               
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-----------------------------------------------  142 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-----------------------------------------------  142 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-----------------------------------------------
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-----------------------------------------------
Confidence            789999999999999986 89999999766200                                               


Q ss_pred             EEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCc--------------
Q 010037          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY--------------  430 (519)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~--------------  430 (519)
                                   ....+..|...+.+++|+|+| +|+.++ ++.|++||+.+++...... +...              
T Consensus       143 -------------~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~  208 (741)
T 2ecf_A          143 -------------AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEM  208 (741)
T ss_dssp             -------------SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHS
T ss_pred             -------------eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeecc
Confidence                         011233466779999999999 788777 4699999999988776654 2222              


Q ss_pred             --EEEEEEeeCCCCEEEEEeCCC---------------------------------eEEEEEcCC-CcEEeec---cCCC
Q 010037          431 --VTSVAFNPVDDNYFISGSIDG---------------------------------KVRIWEVRR-CQVVDYT---DIRE  471 (519)
Q Consensus       431 --V~~v~fsp~d~~~l~sgs~Dg---------------------------------~V~iwd~~~-~~~~~~~---~~~~  471 (519)
                        +.+++|+| |+++|++++.|+                                 .|++||+.+ ++.....   .+..
T Consensus       209 ~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  287 (741)
T 2ecf_A          209 DRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDI  287 (741)
T ss_dssp             CCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSE
T ss_pred             ccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcce
Confidence              47899999 999999988765                                 899999998 8765433   4677


Q ss_pred             ceEEEEEeeCCCEEEEEec-----CCeEEEEECCCCeeeec
Q 010037          472 IVSAVCYCPDGKGGIVGTM-----TGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       472 ~V~~v~~spdg~~l~sgs~-----dg~v~iwdl~~~~l~~~  507 (519)
                      .+..++| |||++|++++.     ++.|++||+.++++..+
T Consensus       288 ~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~  327 (741)
T 2ecf_A          288 YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL  327 (741)
T ss_dssp             EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE
T ss_pred             EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE
Confidence            8999999 99999998764     56799999998876543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.74  E-value=6.7e-16  Score=152.52  Aligned_cols=235  Identities=11%  Similarity=0.154  Sum_probs=160.4

Q ss_pred             CeEEeeecCCeEEEeeCCccccccccccccceee-cCCC-CEEEEEEccCCCEE-EEEeCCCcEEEEecccCeeeceeec
Q 010037          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEG-SILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDV  324 (519)
Q Consensus       248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~-~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~~~~~~~  324 (519)
                      .++++++.++.|++||.......       ..+. ++.. .+..++|+|+|++| +++..++.|.+||+.+++....+..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD-------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE-------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE-------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence            47889999999999998754321       1222 2222 47889999999866 5556688999999999887766654


Q ss_pred             cC-----CCCceEEEeecCCCCeEEeeccCCceeeeeeeccC---CCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          325 QD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS---SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       325 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      ..     ..+..+.+.++....+. .....      ......   .+..+.+|+....    +.+..+.. ...+.+++|
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~------~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~-~~~~~~~~~  142 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAI-YESPV------RLELTHFEVQPTRVALYDAETL----SRRKAFEA-PRQITMLAW  142 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEE-EEEEE------EECSSCEEECCCEEEEEETTTT----EEEEEEEC-CSSCCCEEE
T ss_pred             CCcccccccccceEECCCCCEEEE-Eeccc------ccccccccccCceEEEEECCCC----cEEEEEeC-CCCcceeEE
Confidence            32     13445555544322111 11000      000000   2345566655432    22333332 446788899


Q ss_pred             cCCC-eEEEEeCCCcEEEEECCCCeEEEEecC------------------------------------------------
Q 010037          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH------------------------------------------------  427 (519)
Q Consensus       397 sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h------------------------------------------------  427 (519)
                      +|++ +|+++  ++.|.+||+.+++.+..+..                                                
T Consensus       143 s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (337)
T 1pby_B          143 ARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG  220 (337)
T ss_dssp             CTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred             CCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc
Confidence            9998 67766  68899999988877655431                                                


Q ss_pred             -------------------CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEE
Q 010037          428 -------------------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG  488 (519)
Q Consensus       428 -------------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sg  488 (519)
                                         ...+.+++|+| ++++++++  ++.|++||+.+++.+........+.+++|+|||++|+++
T Consensus       221 v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  297 (337)
T 1pby_B          221 LLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             eEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence                               12345689999 89998888  799999999999888655556678899999999999999


Q ss_pred             ecCCeEEEEECCCCeeee
Q 010037          489 TMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       489 s~dg~v~iwdl~~~~l~~  506 (519)
                      +.++.|++||+.++++..
T Consensus       298 ~~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          298 GALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             SBSSEEEEEETTTCCEEE
T ss_pred             cCCCcEEEEECcCCcEEE
Confidence            999999999999887653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=4.1e-17  Score=175.23  Aligned_cols=235  Identities=11%  Similarity=0.015  Sum_probs=163.5

Q ss_pred             cccceeecCCCCeEEeeec-CCeEEEeeCCccccccccccccceeecCC-CCEEEEEEccCCCEEEEEeC---CCcEEEE
Q 010037          237 RHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGE---DGTVRVW  311 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~-dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs~---Dg~I~iW  311 (519)
                      .+.+++|+|||+.||.++. +|+++||++..+..        +.+..|. ..|..+.|+|| +++++++.   +...+||
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCCCc--------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence            3566899999999999877 99999999743221        2234455 68999999999 77887765   5567777


Q ss_pred             eccc--CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          312 KVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       312 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      .+..  ......+... .......+.++....++.....              + ...+|+...     .....+..+..
T Consensus        94 ~~~~~~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~--------------~-~~~l~d~~~-----g~~~~l~~~~~  152 (582)
T 3o4h_A           94 KVNTSRPGEEQRLEAV-KPMRILSGVDTGEAVVFTGATE--------------D-RVALYALDG-----GGLRELARLPG  152 (582)
T ss_dssp             EEETTSTTCCEECTTS-CSBEEEEEEECSSCEEEEEECS--------------S-CEEEEEEET-----TEEEEEEEESS
T ss_pred             EEeccCCCccccccCC-CCceeeeeCCCCCeEEEEecCC--------------C-CceEEEccC-----CcEEEeecCCC
Confidence            6644  2211122111 1223445555554433322111              1 111332211     12222333333


Q ss_pred             CeeEEEEcCCC-eEEEEeCC----CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCc
Q 010037          390 EVLDLSWSKNG-FLLSSSAD----KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQ  462 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~D----g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg--~V~iwd~~~~~  462 (519)
                        .+++|+|+| +|++++.+    ..|++||+.+++......|...+..++|+| |+++|+++..++  .|++||+.+++
T Consensus       153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCc
Confidence              889999999 88877776    789999999998776666888999999999 999999888898  89999999988


Q ss_pred             EEeeccCCCceEEEE--------EeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          463 VVDYTDIREIVSAVC--------YCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       463 ~~~~~~~~~~V~~v~--------~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ......+...+..++        |+|||.++++++.+|.+++|++  +++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~  279 (582)
T 3o4h_A          230 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE  279 (582)
T ss_dssp             EEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred             EEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence            775555666666666        9999988999999999999999  55543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.73  E-value=1.4e-15  Score=150.57  Aligned_cols=236  Identities=11%  Similarity=0.110  Sum_probs=158.9

Q ss_pred             eecCCCCe-EEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEecccCee-
Q 010037          242 TLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHER-  318 (519)
Q Consensus       242 ~~sp~g~~-lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~~~~~-  318 (519)
                      .|.+++.+ ++++..++.|.+||.......       ..+..+...+ .++|+|+|++|++++. ++.|.+||+.+++. 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL-------NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEE-------EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccccee-------eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence            45555555 677888999999998754432       2234455566 9999999997776665 89999999998886 


Q ss_pred             eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (519)
                      ...+........++.+.++....+  ....           ......+.+|+.....    .+..+.. ...+.+++|+|
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~--~~~~-----------~~~~~~i~v~d~~~~~----~~~~~~~-~~~~~~~~~sp  137 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDDQFAV--TVTG-----------LNHPFNMQSYSFLKNK----FISTIPI-PYDAVGIAISP  137 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEE--ECCC-----------SSSSCEEEEEETTTTE----EEEEEEC-CTTEEEEEECT
T ss_pred             EEecccCCCCccceEECCCCCEEE--EecC-----------CCCcccEEEEECCCCC----eEEEEEC-CCCccceEECC
Confidence            555555444433355554432111  1110           0011156666654322    2333333 44568999999


Q ss_pred             CC-eEE-EEeCCCc-EEEEECCCCeEE-----EEecCCCcEEEEEEeeCCCCEEE-EEeCCCeEEEEEcCCCcE---Eee
Q 010037          399 NG-FLL-SSSADKT-VRLWQVGIDRCL-----RVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRRCQV---VDY  466 (519)
Q Consensus       399 ~~-~L~-sgs~Dg~-V~lWdl~~~~~~-----~~~~h~~~V~~v~fsp~d~~~l~-sgs~Dg~V~iwd~~~~~~---~~~  466 (519)
                      +| +|+ +...++. |.+|++.....+     ..+.....+..++|+| ++++++ ++..++.|++||+.+++.   +..
T Consensus       138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~  216 (331)
T 3u4y_A          138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNA  216 (331)
T ss_dssp             TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence            99 454 4556688 999998764332     3334566789999999 888555 455689999999998887   655


Q ss_pred             ccCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCCee
Q 010037          467 TDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGMQI  504 (519)
Q Consensus       467 ~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~~l  504 (519)
                      ......+..++|+|||++|+++. .++.|.+||+.++++
T Consensus       217 ~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          217 VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            55567788999999999777665 477899999999887

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.73  E-value=4e-17  Score=179.65  Aligned_cols=200  Identities=11%  Similarity=0.062  Sum_probs=150.9

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCC---CEEEEEEccCCCEEEEEeCC---------
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGED---------  305 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~LaSgs~D---------  305 (519)
                      ..+++|+|+|+++++ +.||+|++|+...+...       +.+.+|..   .|.+++|||||++|++++.+         
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-------VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-------EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-------EEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence            345799999998776 68999999998755432       23445554   49999999999999999875         


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      +.|.+||+.+++.. .+                                                           ....
T Consensus        91 ~~i~~~d~~~~~~~-~l-----------------------------------------------------------~~~~  110 (723)
T 1xfd_A           91 GYYVLSKIPHGDPQ-SL-----------------------------------------------------------DPPE  110 (723)
T ss_dssp             SEEEEEESSSCCCE-EC-----------------------------------------------------------CCTT
T ss_pred             eeEEEEECCCCceE-ec-----------------------------------------------------------cCCc
Confidence            67889998776531 11                                                           1112


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCc------------------EEEEEEeeCCCCEEE
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY------------------VTSVAFNPVDDNYFI  445 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~------------------V~~v~fsp~d~~~l~  445 (519)
                      +|...+..++|+|+| .|+.++. +.|++||+.+++..+... +...                  +.+++|+| ++++|+
T Consensus       111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la  188 (723)
T 1xfd_A          111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLA  188 (723)
T ss_dssp             CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEE
T ss_pred             cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEE
Confidence            355568899999999 8888876 799999999988776654 2322                  37899999 999999


Q ss_pred             EEeCCC----------------------------------eEEEEEcCCCcE-EeeccC------CCceEEEEEeeCCCE
Q 010037          446 SGSIDG----------------------------------KVRIWEVRRCQV-VDYTDI------REIVSAVCYCPDGKG  484 (519)
Q Consensus       446 sgs~Dg----------------------------------~V~iwd~~~~~~-~~~~~~------~~~V~~v~~spdg~~  484 (519)
                      +++.|+                                  .|++||+.+++. ..+..+      ...+..++|+|||++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~  268 (723)
T 1xfd_A          189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV  268 (723)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred             EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence            987653                                  799999998875 334332      567899999999998


Q ss_pred             EEEEecC----CeEEEEECCCCeeeec
Q 010037          485 GIVGTMT----GNCRFYDIKGMQIFDL  507 (519)
Q Consensus       485 l~sgs~d----g~v~iwdl~~~~l~~~  507 (519)
                      |++....    ..|++||+.++++..+
T Consensus       269 l~~~~~~~~~~~~i~~~d~~~g~~~~~  295 (723)
T 1xfd_A          269 AVTWLNRAQNVSILTLCDATTGVCTKK  295 (723)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             EEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence            8776543    5799999998876543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.72  E-value=1.3e-15  Score=150.88  Aligned_cols=228  Identities=12%  Similarity=0.151  Sum_probs=147.1

Q ss_pred             eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC-CcEEEEecc--cCee--eceee
Q 010037          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GTVRVWKVI--EHER--LDGFD  323 (519)
Q Consensus       249 ~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D-g~I~iWd~~--~~~~--~~~~~  323 (519)
                      .+++++.++.|++|++..... ..   .. ....|...+.+++|+|+|++|++++.+ +.|++|++.  ++..  +..+.
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~-~~---~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGA-LT---LT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC-EE---EE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEEeCCCCCeEEEEEECCCCc-EE---Ee-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence            344457899999999863111 11   11 123477789999999999999998886 999999997  4442  23333


Q ss_pred             ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE
Q 010037          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (519)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L  402 (519)
                      ... .+..+.+.++... ++...              ..++.+.+|+... ....+.+..+.. ...+.+++|+|++ +|
T Consensus        82 ~~~-~~~~~~~s~dg~~-l~~~~--------------~~~~~i~~~d~~~-~~~~~~~~~~~~-~~~~~~~~~s~dg~~l  143 (343)
T 1ri6_A           82 LPG-SLTHISTDHQGQF-VFVGS--------------YNAGNVSVTRLED-GLPVGVVDVVEG-LDGCHSANISPDNRTL  143 (343)
T ss_dssp             CSS-CCSEEEECTTSSE-EEEEE--------------TTTTEEEEEEEET-TEEEEEEEEECC-CTTBCCCEECTTSSEE
T ss_pred             cCC-CCcEEEEcCCCCE-EEEEe--------------cCCCeEEEEECCC-CccccccccccC-CCCceEEEECCCCCEE
Confidence            323 4555555554422 21111              1233344444310 001122333333 3458999999999 77


Q ss_pred             EEEe-CCCcEEEEECCC-CeEEEE----e--cCCCcEEEEEEeeCCCCEEEEE-eCCCeEEEEEcCC--CcE--E-eec-
Q 010037          403 LSSS-ADKTVRLWQVGI-DRCLRV----F--SHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRR--CQV--V-DYT-  467 (519)
Q Consensus       403 ~sgs-~Dg~V~lWdl~~-~~~~~~----~--~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~iwd~~~--~~~--~-~~~-  467 (519)
                      ++++ .++.|++||+.+ ++....    +  .....+.+++|+| ++++++++ ..++.|++|++..  ++.  . ... 
T Consensus       144 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~  222 (343)
T 1ri6_A          144 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM  222 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred             EEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc
Confidence            7776 899999999987 654322    2  2456789999999 88866554 4789999999954  432  1 111 


Q ss_pred             -c----CCCceEEEEEeeCCCEEEEE-ecCCeEEEEECC
Q 010037          468 -D----IREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIK  500 (519)
Q Consensus       468 -~----~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~  500 (519)
                       .    ....+..++|+|+|++|+++ ..++.|++||+.
T Consensus       223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          223 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence             1    12356789999999988754 478999999998

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.72  E-value=3.1e-15  Score=148.97  Aligned_cols=226  Identities=13%  Similarity=0.087  Sum_probs=159.5

Q ss_pred             ccceeecCCCCeEEe-eecCCeEEEeeCCccccccccccccceeecCCC---------CEEEEEEccCCCEEEEEe--CC
Q 010037          238 HGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---------SILTMKFSLDGQYLASGG--ED  305 (519)
Q Consensus       238 ~~~~~~sp~g~~las-gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~---------~I~~l~fspdg~~LaSgs--~D  305 (519)
                      ...++|+|+++++++ +..++.|.+||.......       ..+..+..         .+.++.|+|+|++|++++  .+
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  163 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-------GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE  163 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE-------EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE-------EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC
Confidence            345799999996554 556799999998754421       12222221         278999999999877776  47


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      +.|.+||+.+++....+......+..+.+.++... ++.               ...++.+.+|+......    +..+.
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~---------------~~~~~~i~~~d~~~~~~----~~~~~  223 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR-LYT---------------TNADGELITIDTADNKI----LSRKK  223 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE-EEE---------------ECTTSEEEEEETTTTEE----EEEEE
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCE-EEE---------------EcCCCeEEEEECCCCeE----EEEEE
Confidence            89999999999888777644444556666554432 111               11234455555443222    22222


Q ss_pred             ----ccCCCeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEc
Q 010037          386 ----GHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEV  458 (519)
Q Consensus       386 ----~h~~~V~~l~~sp~~-~L~sgs-~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~  458 (519)
                          ++...+..++|+|++ +|+.++ .++.|.+||+.+++.+..+..... ..++|+| ++++++++. .++.|.+||+
T Consensus       224 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~-dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          224 LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNP-ARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEET-TTTEEEEEETTTTEEEEEET
T ss_pred             cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECC-CCCEEEEEECCCCeEEEEEC
Confidence                355678899999999 555554 559999999999999888874333 5799999 888555544 6899999999


Q ss_pred             CCCcEEeeccCCCceEEEEEeeCCCEEEEEecCC
Q 010037          459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG  492 (519)
Q Consensus       459 ~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg  492 (519)
                      .+++.+........+..++|+|||++|+++..++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          302 KSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             TTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred             CCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence            9999887666667889999999999888877664

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.70  E-value=1.5e-15  Score=167.68  Aligned_cols=250  Identities=9%  Similarity=0.081  Sum_probs=168.0

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      .+.+++|+|||++|++++. +.|++|++......     ....+..|...+..++|+|||++||.++ ++.|++||+.++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-----AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-----SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-----eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            4567899999999999886 99999999764100     1123566888999999999999999987 469999999888


Q ss_pred             eeeceeeccCC----------------CCceEEEeecCCCCeEEeeccCCceee---------------e-eeeccC--C
Q 010037          317 ERLDGFDVQDT----------------DPSCLYFTINHLSQLIPIDVDKEKIDK---------------T-KSLRKS--S  362 (519)
Q Consensus       317 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~s--~  362 (519)
                      +..........                ....+.|+++....++... +......               . ....+.  .
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            76543332221                1355677776654433322 1110000               0 000011  1


Q ss_pred             CeeEEEeCCcc-ccccccceeEe--eccCCCeeEEEEcCCC-eEEEEeC-----CCcEEEEECCCCeEEEEec-CC-C--
Q 010037          363 DLTCVVLPPKV-FRLLEKPLHEF--QGHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGIDRCLRVFS-HN-N--  429 (519)
Q Consensus       363 ~~~~~~~~~~~-~~~~~~~~~~~--~~h~~~V~~l~~sp~~-~L~sgs~-----Dg~V~lWdl~~~~~~~~~~-h~-~--  429 (519)
                      ...+.+|+... ..    .....  ..|...+..++| |+| +|+.++.     +..|++||+.++++...+. +. .  
T Consensus       262 ~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  336 (741)
T 2ecf_A          262 QVKLGVISPAEQAQ----TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV  336 (741)
T ss_dssp             EEEEEEECSSTTCC----CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred             eeEEEEEECCCCCc----eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence            22455555543 22    11111  147788999999 999 7776553     5789999999998887775 22 2  


Q ss_pred             -cEEEEEEeeCCCCEEEEEeCCCeEEEEEcC-CCcEEeeccCCCceEEE-EEeeCCCEEEE-EecCC--eEEEEECC
Q 010037          430 -YVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVSAV-CYCPDGKGGIV-GTMTG--NCRFYDIK  500 (519)
Q Consensus       430 -~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~~~~V~~v-~~spdg~~l~s-gs~dg--~v~iwdl~  500 (519)
                       .+..++|+| +++++++++.||.++||.+. ++....+..+...|..+ +|+|||+.|+. ++.++  .++||++.
T Consensus       337 ~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          337 PLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CcCCceEECC-CCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence             456899999 88899999999988888765 33444566777788887 59999997765 44455  88999875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.69  E-value=1.9e-14  Score=144.58  Aligned_cols=252  Identities=14%  Similarity=0.098  Sum_probs=156.5

Q ss_pred             ecccceeecCCCCeEEeeecC----CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 010037          236 DRHGSATLKPGDHELTLGQRM----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRV  310 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~d----g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~I~i  310 (519)
                      .....++|+|+|++|++++.+    +.|.+|++......+.   ....+..+......+++  ++++|++++ .++.|.+
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~---~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH---LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE---EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE---EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            344558999999999998875    8999999875321111   11223445566778888  888777776 5789999


Q ss_pred             EecccCeeeceeec---cCC-----------CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc-
Q 010037          311 WKVIEHERLDGFDV---QDT-----------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-  375 (519)
Q Consensus       311 Wd~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-  375 (519)
                      |++.....+..+..   ...           .+..+.+.++... ++...              ..+..+.+|+..... 
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~-l~~~~--------------~~~~~v~v~~~~~~~~  189 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY-LLADD--------------LGTDQIHKFNINPNAN  189 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-EEEEE--------------TTTTEEEEEEECTTCC
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-EEEEe--------------CCCCEEEEEEEcCCCC
Confidence            99975443322110   000           0122444433321 22111              112233333221110 


Q ss_pred             ------cccc--ceeEeeccCCCeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEE--EEec----CCCcEEEEEEeeC
Q 010037          376 ------LLEK--PLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCL--RVFS----HNNYVTSVAFNPV  439 (519)
Q Consensus       376 ------~~~~--~~~~~~~h~~~V~~l~~sp~~-~L~sgs-~Dg~V~lWdl~~~~~~--~~~~----h~~~V~~v~fsp~  439 (519)
                            +...  .......+...+..++|+|+| +|++++ .++.|.+|++.+++..  ..+.    +...+..++|+| 
T Consensus       190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-  268 (361)
T 3scy_A          190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-  268 (361)
T ss_dssp             TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-
T ss_pred             cccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-
Confidence                  0000  011122344567899999999 676666 6899999999877553  2222    335578999999 


Q ss_pred             CCCEEEEEeCC--CeEEEEEcC--CCc--EEeeccCCCceEEEEEeeCCCEEEEEe-cCCeEEEE--ECCCCeeeecc
Q 010037          440 DDNYFISGSID--GKVRIWEVR--RCQ--VVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFY--DIKGMQIFDLS  508 (519)
Q Consensus       440 d~~~l~sgs~D--g~V~iwd~~--~~~--~~~~~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iw--dl~~~~l~~~~  508 (519)
                      ++++|+++..+  +.|.+|++.  +++  .+........+..++|+|||++|++++ .++.|.+|  |..++++..+.
T Consensus       269 dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          269 DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred             CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence            99988776654  899999996  444  332222256788999999999988887 57889995  66678776654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.68  E-value=1.7e-15  Score=173.87  Aligned_cols=242  Identities=6%  Similarity=0.070  Sum_probs=175.3

Q ss_pred             eeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 010037          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iW  311 (519)
                      ..|...+.++.|+++ .+++++..++.++||.+.......      +.+..|. .+..++|+|||++|+.+ .++.|.+|
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~------~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~  270 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL------RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIF  270 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC------EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEE
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc------eEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEe
Confidence            445566667889988 677778888999999875322111      2234444 46678999999999887 48999999


Q ss_pred             ecccCeeeceeeccC-----------CCCceEEEe-ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          312 KVIEHERLDGFDVQD-----------TDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       312 d~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                      ++.... +..+....           ..+..+.|+ ++....++..                 ...+.+++...     .
T Consensus       271 d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-----------------~~~i~~~~~~~-----~  327 (1045)
T 1k32_A          271 NPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-----------------RGQAFIQDVSG-----T  327 (1045)
T ss_dssp             CTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-----------------TTEEEEECTTS-----S
T ss_pred             cCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-----------------cCEEEEEcCCC-----C
Confidence            994433 22332211           124455555 4432222111                 23444554432     2


Q ss_pred             ceeEeeccCC-CeeEEEEcCCC-eEEEEeCCCcEE-EEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          380 PLHEFQGHSS-EVLDLSWSKNG-FLLSSSADKTVR-LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       380 ~~~~~~~h~~-~V~~l~~sp~~-~L~sgs~Dg~V~-lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      ....+..|.. .+..++|+ +| .|+.++.+..|. +||+.+++......|...+..++|+| ++++|++++.++.|++|
T Consensus       328 ~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~  405 (1045)
T 1k32_A          328 YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTV  405 (1045)
T ss_dssp             BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECC-CCCEEEEECCCCeEEEE
Confidence            2334566777 89999999 88 888888888898 99999887665556778999999999 99999999999999999


Q ss_pred             EcCCCcEEeec-cCCCceEEEEEeeCCCEEEEEecCC----------eEEEEECCCCeeeec
Q 010037          457 EVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMTG----------NCRFYDIKGMQIFDL  507 (519)
Q Consensus       457 d~~~~~~~~~~-~~~~~V~~v~~spdg~~l~sgs~dg----------~v~iwdl~~~~l~~~  507 (519)
                      |+.+++..... .|...+..++|+|||++|++++.++          .|++||+.++++..+
T Consensus       406 d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l  467 (1045)
T 1k32_A          406 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA  467 (1045)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred             ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence            99999887654 7888899999999999999887754          899999998876554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.67  E-value=1e-14  Score=160.04  Aligned_cols=250  Identities=14%  Similarity=0.089  Sum_probs=159.3

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCc-----ccccc-cccccccee------ecCCCCEEEEEEccCCCEEEEEe
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----QSREL-SSLYTGQEF------LAHEGSILTMKFSLDGQYLASGG  303 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~-----~~~~~-~~~~~~~~l------~~H~~~I~~l~fspdg~~LaSgs  303 (519)
                      ..+.+++|+|+|++|+++ .++.|++|++..     ..... ........+      ..+...+.++.|+|||++|++++
T Consensus       121 ~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~  199 (706)
T 2z3z_A          121 EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR  199 (706)
T ss_dssp             TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred             ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE
Confidence            345668999999999995 789999999875     33211 000000000      01112258899999999999997


Q ss_pred             ---------------------------------CCCcEEEEecccCeeeceeec--cCCCCceEEEeecCCCCeEEeecc
Q 010037          304 ---------------------------------EDGTVRVWKVIEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVD  348 (519)
Q Consensus       304 ---------------------------------~Dg~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  348 (519)
                                                       .+..|++||+.+++.......  +...+..+.|+++....++. ..+
T Consensus       200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~-~~~  278 (706)
T 2z3z_A          200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVA-EVN  278 (706)
T ss_dssp             EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEE-EEC
T ss_pred             ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEE-EeC
Confidence                                             446799999988875433321  12223345555544322221 111


Q ss_pred             CCceeeeeeeccCCCeeEEEeCCccccccccceeEee--ccC---CCeeEEEEcC--CC-eEEEEeCCCcEEEEECC-CC
Q 010037          349 KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ--GHS---SEVLDLSWSK--NG-FLLSSSADKTVRLWQVG-ID  419 (519)
Q Consensus       349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~h~---~~V~~l~~sp--~~-~L~sgs~Dg~V~lWdl~-~~  419 (519)
                      .          ......+.+|+.....    ....+.  .+.   ..+.+++|+|  +| +|++++.|+.++||.+. .+
T Consensus       279 ~----------~~~~~~v~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~  344 (706)
T 2z3z_A          279 R----------AQNECKVNAYDAETGR----FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG  344 (706)
T ss_dssp             T----------TSCEEEEEEEETTTCC----EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred             C----------CCCeeEEEEEECCCCc----eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence            1          1122345555543320    111111  122   2347789999  99 88889999999999876 56


Q ss_pred             eEEEEec-CCCcEEE-EEEeeCCCCEEEEEeC-CC----eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC-
Q 010037          420 RCLRVFS-HNNYVTS-VAFNPVDDNYFISGSI-DG----KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-  491 (519)
Q Consensus       420 ~~~~~~~-h~~~V~~-v~fsp~d~~~l~sgs~-Dg----~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d-  491 (519)
                      ..+..+. +...+.. ++|+| +++.|+.++. ++    .|..||+.+++...+ .+...+..++|+|||++|+....+ 
T Consensus       345 ~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~  422 (706)
T 2z3z_A          345 RLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKTKDL-TPESGMHRTQLSPDGSAIIDIFQSP  422 (706)
T ss_dssp             CEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCCEES-CCSSSEEEEEECTTSSEEEEEEECS
T ss_pred             CEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCceec-cCCCceEEEEECCCCCEEEEEecCC
Confidence            6666664 6667876 89999 8877765544 44    677778877764433 366778999999999998876544 


Q ss_pred             ---CeEEEEECCCCe
Q 010037          492 ---GNCRFYDIKGMQ  503 (519)
Q Consensus       492 ---g~v~iwdl~~~~  503 (519)
                         +.|++||+.+++
T Consensus       423 ~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          423 TVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SCSCEEEEEESSSCE
T ss_pred             CCCcEEEEEECCCCe
Confidence               569999999887

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.67  E-value=1.4e-15  Score=174.54  Aligned_cols=195  Identities=8%  Similarity=0.058  Sum_probs=162.6

Q ss_pred             ecccceeec-CCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCC-CEEEEEEccCCCEEEEEeCCCcEE-EEe
Q 010037          236 DRHGSATLK-PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-SILTMKFSLDGQYLASGGEDGTVR-VWK  312 (519)
Q Consensus       236 ~~~~~~~~s-p~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~-~I~~l~fspdg~~LaSgs~Dg~I~-iWd  312 (519)
                      ..+.+++|+ |+|++|++++ ++.|.+|+......        ..+..|.. .+..++|+ ||+.|++++.++.|. +|+
T Consensus       296 ~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d  365 (1045)
T 1k32_A          296 PSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV--------LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD  365 (1045)
T ss_dssp             GGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE--------EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE
T ss_pred             cccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce--------EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEE
Confidence            356779999 9999999987 88999999875432        12456777 89999999 999999999887777 888


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      +.+++.                                                               ..+.+|...+.
T Consensus       366 ~~~~~~---------------------------------------------------------------~~l~~~~~~~~  382 (1045)
T 1k32_A          366 YRTGKA---------------------------------------------------------------EKFEENLGNVF  382 (1045)
T ss_dssp             TTTCCE---------------------------------------------------------------EECCCCCCSEE
T ss_pred             CCCCCc---------------------------------------------------------------eEecCCcccee
Confidence            765431                                                               11225667889


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC----------eEEEEEcCC
Q 010037          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG----------KVRIWEVRR  460 (519)
Q Consensus       393 ~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg----------~V~iwd~~~  460 (519)
                      .++|+|+| +|++++.++.|++||+.+++....+ .|...+.+++|+| ++++|++++.++          .|++||+.+
T Consensus       383 ~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          383 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            99999999 9999999999999999999988887 5888999999999 999998887654          899999999


Q ss_pred             CcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ++...+..+...+..++|+|||++|++++.++...+|+.....+
T Consensus       462 g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~  505 (1045)
T 1k32_A          462 RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  505 (1045)
T ss_dssp             TEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             CcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence            98777888888899999999999999999988888898765443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.67  E-value=6.4e-15  Score=161.98  Aligned_cols=251  Identities=8%  Similarity=0.063  Sum_probs=162.3

Q ss_pred             ccceeecCCCCeEEeeecC---------CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          238 HGSATLKPGDHELTLGQRM---------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~d---------g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      +.+++|+|||++|++++.+         +.|++|++..+...  .+   ....+|...+..++|||||++||.++. +.|
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~l---~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i  136 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ--SL---DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI  136 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE--EC---CCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE--ec---cCCccccccccccEECCCCCEEEEEEC-CeE
Confidence            5678999999999998764         78899999865431  11   112346666889999999999999886 799


Q ss_pred             EEEecccCeeeceeeccCCCC------------------ceEEEeecCCCCeEEeeccCCceeeeee-------------
Q 010037          309 RVWKVIEHERLDGFDVQDTDP------------------SCLYFTINHLSQLIPIDVDKEKIDKTKS-------------  357 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  357 (519)
                      ++|++.+++.......+....                  ..+.|++++...++... +.........             
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~  215 (723)
T 1xfd_A          137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI-NDSRVPIMELPTYTGSIYPTVKP  215 (723)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE-ECTTSCEEEECCCSSSSSCCCEE
T ss_pred             EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE-CCCccceEEeeccCCcCCCccee
Confidence            999998887655443322222                  45667766644333322 1111100000             


Q ss_pred             --e--cc--CCCeeEEEeCCccccccccceeEeec------cCCCeeEEEEcCCC-eEEEEeC----CCcEEEEECCCCe
Q 010037          358 --L--RK--SSDLTCVVLPPKVFRLLEKPLHEFQG------HSSEVLDLSWSKNG-FLLSSSA----DKTVRLWQVGIDR  420 (519)
Q Consensus       358 --~--~~--s~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~~-~L~sgs~----Dg~V~lWdl~~~~  420 (519)
                        .  .+  .....+.+|+.....    ....+..      |...+..++|+|+| +|++.+.    +..|++||+.+++
T Consensus       216 ~~~~~~G~~~~~~~l~~~d~~~~~----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~  291 (723)
T 1xfd_A          216 YHYPKAGSENPSISLHVIGLNGPT----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (723)
T ss_dssp             EECCBTTSCCCEEEEEEEESSSSC----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             ccCCCCCCCCCeeEEEEEECCCCc----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence              0  00  112355666554322    1233333      36678999999999 6655543    3679999999998


Q ss_pred             EEEEec--CCCcEE----EEEEeeCCCCEEEE--EeCCC------eEEEEE-cCCCc---EEeeccCCCceEE-EEEeeC
Q 010037          421 CLRVFS--HNNYVT----SVAFNPVDDNYFIS--GSIDG------KVRIWE-VRRCQ---VVDYTDIREIVSA-VCYCPD  481 (519)
Q Consensus       421 ~~~~~~--h~~~V~----~v~fsp~d~~~l~s--gs~Dg------~V~iwd-~~~~~---~~~~~~~~~~V~~-v~~spd  481 (519)
                      +...+.  +...+.    .++|+| +++.|+.  +..++      .|.+|| ..+++   ...+......+.. ++|+||
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd  370 (723)
T 1xfd_A          292 CTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK  370 (723)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT
T ss_pred             ceEEEEeccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC
Confidence            877654  444443    889999 8886654  55677      577777 45555   4444444444554 699999


Q ss_pred             CCEEEEEecC---CeEEEEECC
Q 010037          482 GKGGIVGTMT---GNCRFYDIK  500 (519)
Q Consensus       482 g~~l~sgs~d---g~v~iwdl~  500 (519)
                      |+.|+..+.+   +.++||++.
T Consensus       371 g~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          371 GNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             TTEEEEEESSSCTTCCEEEEEC
T ss_pred             CCEEEEEEcCCCCcceEEEEEe
Confidence            9999876655   789999875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.66  E-value=8.5e-15  Score=160.70  Aligned_cols=258  Identities=12%  Similarity=0.103  Sum_probs=168.1

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc-
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-  315 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~-  315 (519)
                      .+.+++|+|+ ..++.+ .++.|++|++.....        ..+..|...+.+++|+|||++||++ .|+.|++|++.+ 
T Consensus        83 ~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~  151 (706)
T 2z3z_A           83 PSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV--------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKL  151 (706)
T ss_dssp             CCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE--------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCT
T ss_pred             CceeEEECCC-CeEEEE-ECCEEEEEECCCCce--------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcc
Confidence            4567899999 666555 459999999875432        1244567788899999999999985 689999999988 


Q ss_pred             ----CeeeceeeccCCC--------------CceEEEeecCCCCeEEeeccCCceeeeee----------------e--c
Q 010037          316 ----HERLDGFDVQDTD--------------PSCLYFTINHLSQLIPIDVDKEKIDKTKS----------------L--R  359 (519)
Q Consensus       316 ----~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~--~  359 (519)
                          ++...........              ...+.|+++....++.. .+.........                .  .
T Consensus       152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~-~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR-MDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE-EECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE-ECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence                6654333222221              35667776654433322 11111000000                0  0


Q ss_pred             cCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCC-----cEEEEECCCC-eEEEEec--CCC-
Q 010037          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK-----TVRLWQVGID-RCLRVFS--HNN-  429 (519)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg-----~V~lWdl~~~-~~~~~~~--h~~-  429 (519)
                      ......+.+|+.......  .+.....|...+.+++|+|+| +|++++.++     .|++||+.++ .......  +.. 
T Consensus       231 ~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~  308 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTV--YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY  308 (706)
T ss_dssp             CCCEEEEEEEETTTTEEE--ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC
T ss_pred             CCCeeEEEEEECCCCceE--eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe
Confidence            113455666665432211  111112467789999999999 788877775     8999999998 4433332  322 


Q ss_pred             --cEEEEEEee-CCCCEEEEEeCCCeEEEEEcC-CCcEE-eeccCCCceEE-EEEeeCCCEEEEEec-CC----eEEEEE
Q 010037          430 --YVTSVAFNP-VDDNYFISGSIDGKVRIWEVR-RCQVV-DYTDIREIVSA-VCYCPDGKGGIVGTM-TG----NCRFYD  498 (519)
Q Consensus       430 --~V~~v~fsp-~d~~~l~sgs~Dg~V~iwd~~-~~~~~-~~~~~~~~V~~-v~~spdg~~l~sgs~-dg----~v~iwd  498 (519)
                        .+.+++|+| .+++++++++.|+.++||.+. ++..+ .+..+...+.. ++|+|||+.|+.++. ++    .|..||
T Consensus       309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence              246789998 256789999999999999876 44443 56666667776 799999998876554 44    678888


Q ss_pred             CCCCeeeecc
Q 010037          499 IKGMQIFDLS  508 (519)
Q Consensus       499 l~~~~l~~~~  508 (519)
                      +.++++..+.
T Consensus       389 ~~~~~~~~l~  398 (706)
T 2z3z_A          389 IKGGKTKDLT  398 (706)
T ss_dssp             TTCCCCEESC
T ss_pred             cCCCCceecc
Confidence            8877655443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=167.83  Aligned_cols=195  Identities=12%  Similarity=0.114  Sum_probs=143.0

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCC---CEEEEEEccCCCEEEEEeC---------CCc
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGE---------DGT  307 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~LaSgs~---------Dg~  307 (519)
                      .++|+|+|.+++++ .++.|++|+...+...       +.+.+|..   .|.+++|||||++||+++.         |+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~   91 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-------TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT   91 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-------EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-------EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence            47899999666555 6999999998765432       12333332   4889999999999999876         789


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |++||+.+++.+...                                                            .+   
T Consensus        92 i~~~d~~~g~~~~~~------------------------------------------------------------~l---  108 (719)
T 1z68_A           92 YYIYDLSNGEFVRGN------------------------------------------------------------EL---  108 (719)
T ss_dssp             EEEEETTTTEECCSS------------------------------------------------------------CC---
T ss_pred             EEEEECCCCccccce------------------------------------------------------------ec---
Confidence            999999887641100                                                            00   


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcE-----------------EEEEEeeCCCCEEEEE
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV-----------------TSVAFNPVDDNYFISG  447 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V-----------------~~v~fsp~d~~~l~sg  447 (519)
                      ...+..++|+|+| .|+.+. ++.|++|++.+++..+...  +...|                 .+++|+| |+++|+++
T Consensus       109 ~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~  186 (719)
T 1z68_A          109 PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYA  186 (719)
T ss_dssp             CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEE
T ss_pred             CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEE
Confidence            1347789999999 777775 7899999999887765432  22223                 4899999 99999998


Q ss_pred             eCCC----------------------------------eEEEEEcCCCcEE---e------eccCCCceEEEEEeeCCCE
Q 010037          448 SIDG----------------------------------KVRIWEVRRCQVV---D------YTDIREIVSAVCYCPDGKG  484 (519)
Q Consensus       448 s~Dg----------------------------------~V~iwd~~~~~~~---~------~~~~~~~V~~v~~spdg~~  484 (519)
                      +.|.                                  .|++||+.+++..   .      +..+...+..++|+||+++
T Consensus       187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~  266 (719)
T 1z68_A          187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV  266 (719)
T ss_dssp             EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE
T ss_pred             EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE
Confidence            8652                                  7899999987642   2      2357778999999999887


Q ss_pred             EEEEecC----CeEEEEE----CCCCeeeec
Q 010037          485 GIVGTMT----GNCRFYD----IKGMQIFDL  507 (519)
Q Consensus       485 l~sgs~d----g~v~iwd----l~~~~l~~~  507 (519)
                      +++....    ..|.+||    +.+++...+
T Consensus       267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~  297 (719)
T 1z68_A          267 CLQWLKRVQNVSVLSICDFREDWQTWDCPKT  297 (719)
T ss_dssp             EEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred             EEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence            7775433    2488999    887776544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.62  E-value=1.1e-14  Score=147.51  Aligned_cols=255  Identities=10%  Similarity=-0.006  Sum_probs=157.5

Q ss_pred             eeecCCCCeEEeeec-CC--eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          241 ATLKPGDHELTLGQR-MR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       241 ~~~sp~g~~lasgs~-dg--~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      .+|+|||++|+.++. +|  .|.+|+.......       +...+|...+..+.|+|||++|+.++.++.|++||+.+++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-------~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-------QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-------ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-------EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            689999999998877 67  4777787644321       1223455555567899999999999999999999999987


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEE-eeccCCceee-------eeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIP-IDVDKEKIDK-------TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      .......+........+........+. ..........       ...........+.+++....     ....+..+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-----~~~~l~~~~~  188 (388)
T 3pe7_A          114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-----ESTVILQENQ  188 (388)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-----CEEEEEEESS
T ss_pred             ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-----ceEEeecCCc
Confidence            665554443322222222222222221 1111000000       00112233455666655432     2344556777


Q ss_pred             CeeEEEEcC-CC-eEEEEeCC------CcEEEEECCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeC-CC----eEE
Q 010037          390 EVLDLSWSK-NG-FLLSSSAD------KTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSI-DG----KVR  454 (519)
Q Consensus       390 ~V~~l~~sp-~~-~L~sgs~D------g~V~lWdl~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~-Dg----~V~  454 (519)
                      .+..++|+| +| .|+.+..+      ..|.++|+..+.......+.  ..+..++|+| +++.|+..+. ++    .|+
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~  267 (388)
T 3pe7_A          189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIY  267 (388)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEE
T ss_pred             cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEE
Confidence            899999999 88 77766653      37888888776554444444  3688899999 8886655443 22    399


Q ss_pred             EEEcCCCcEEeeccCCCc------eEEEEEeeCCCEEEEE---------ecCCeEEEEECCCCeeeecc
Q 010037          455 IWEVRRCQVVDYTDIREI------VSAVCYCPDGKGGIVG---------TMTGNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       455 iwd~~~~~~~~~~~~~~~------V~~v~~spdg~~l~sg---------s~dg~v~iwdl~~~~l~~~~  508 (519)
                      +||+.+++...+......      ...++|+|||+.|+..         ..+..|++||+.++++..+.
T Consensus       268 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  336 (388)
T 3pe7_A          268 SADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA  336 (388)
T ss_dssp             EECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE
T ss_pred             EEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence            999999875433222210      1123799999988864         44668999999998876553

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.62  E-value=2e-14  Score=144.98  Aligned_cols=242  Identities=10%  Similarity=0.039  Sum_probs=152.0

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCC-ccccccccccccceeecCCCCEEEEEEccCCCE--EEEEe-----------
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVK-KQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY--LASGG-----------  303 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~-~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~--LaSgs-----------  303 (519)
                      +..++|+|+|++|++++.+ .|.+|++. .+...  ..   .....+ +.+.+++|+|+|++  ++++.           
T Consensus        42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~--~~---~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV--HE---ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--EE---EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--Ee---eEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            4458999999999988887 99999986 33211  00   011111 23556899999994  55553           


Q ss_pred             --CCCcEEEEecc-cCeeeceeec----cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCc-ccc
Q 010037          304 --EDGTVRVWKVI-EHERLDGFDV----QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VFR  375 (519)
Q Consensus       304 --~Dg~I~iWd~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~  375 (519)
                        .+|.+.+|++. .++....+..    ....+..+.+.++... ++.....              ...+.+|+.. ...
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~--------------~~~v~~~~~~~~g~  179 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LYSADLT--------------ANKLWTHRKLASGE  179 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETT--------------TTEEEEEEECTTSC
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-EEEEcCC--------------CCEEEEEEECCCCC
Confidence              68999999997 4554433332    2233444555544321 2222211              2233333332 111


Q ss_pred             ccccceeEee--ccCCCeeEEEEcCCC-eEEEEe-CCCcEEEEECC--CCeEE---EEec--------CCC------cEE
Q 010037          376 LLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVG--IDRCL---RVFS--------HNN------YVT  432 (519)
Q Consensus       376 ~~~~~~~~~~--~h~~~V~~l~~sp~~-~L~sgs-~Dg~V~lWdl~--~~~~~---~~~~--------h~~------~V~  432 (519)
                      +  ..+..+.  .|...+..++|+|+| +|++++ .+++|.+|++.  +++..   ..+.        |..      .+.
T Consensus       180 ~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  257 (365)
T 1jof_A          180 V--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA  257 (365)
T ss_dssp             E--EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred             E--EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccc
Confidence            1  1122233  245678999999999 777766 47899999865  55543   2221        121      589


Q ss_pred             EEE-EeeCCCCEEEEEeCC-C-----eEEEEEcC-CCcEEe----eccCCCceEEEEEee---CCCEEEEEecC-CeEEE
Q 010037          433 SVA-FNPVDDNYFISGSID-G-----KVRIWEVR-RCQVVD----YTDIREIVSAVCYCP---DGKGGIVGTMT-GNCRF  496 (519)
Q Consensus       433 ~v~-fsp~d~~~l~sgs~D-g-----~V~iwd~~-~~~~~~----~~~~~~~V~~v~~sp---dg~~l~sgs~d-g~v~i  496 (519)
                      .++ |+| ++++|+++..+ .     .|.+|++. ++++..    ...+...+..++|+|   ||++|++++.+ +.|.+
T Consensus       258 ~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v  336 (365)
T 1jof_A          258 DVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             cEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence            999 999 89988776643 2     89999996 566543    222445567899999   89999998875 89999


Q ss_pred             EECCCCee
Q 010037          497 YDIKGMQI  504 (519)
Q Consensus       497 wdl~~~~l  504 (519)
                      |++....+
T Consensus       337 ~~~~~~~l  344 (365)
T 1jof_A          337 YRWKDEFL  344 (365)
T ss_dssp             EEEETTEE
T ss_pred             EEEchhhC
Confidence            99977654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.61  E-value=1.7e-14  Score=154.76  Aligned_cols=203  Identities=10%  Similarity=-0.002  Sum_probs=135.6

Q ss_pred             CCCCEEEEEEccCCCEEEEEeC-CCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccC
Q 010037          283 HEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (519)
Q Consensus       283 H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  361 (519)
                      +..+|++++|+|||++||+++. ||+++||++.+++.......+...+....|+++  ..++......          +.
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~----------g~   87 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSK----------GA   87 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECST----------TS
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCC----------CC
Confidence            3568999999999999999887 999999998666543322221122333333332  1122111100          00


Q ss_pred             CCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeC
Q 010037          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV  439 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~  439 (519)
                      ....+..++.  +. .+... .+.. ...+...+|+|++  .+++.+.++.+.|||+.++++.....+..  .+++|+| 
T Consensus        88 ~~~~l~~~~~--~~-~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-  159 (582)
T 3o4h_A           88 EQHALFKVNT--SR-PGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-  159 (582)
T ss_dssp             CCEEEEEEET--TS-TTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-
T ss_pred             cceEEEEEec--cC-CCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-
Confidence            1111222211  00 00111 1111 1223456777777  44455555556699999998877766554  8999999 


Q ss_pred             CCCEEEEEeCC----CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCC--eEEEEECCCCeee
Q 010037          440 DDNYFISGSID----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG--NCRFYDIKGMQIF  505 (519)
Q Consensus       440 d~~~l~sgs~D----g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg--~v~iwdl~~~~l~  505 (519)
                      +|++|++++.+    +.|++||+.+++...+..+...+..++|+|||+.|+++..+|  .|++||+.+++..
T Consensus       160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            99999988877    789999999998888888888999999999999999888888  8999999988765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.60  E-value=1.7e-14  Score=159.44  Aligned_cols=244  Identities=11%  Similarity=0.080  Sum_probs=157.5

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCC-----CEEEEEEccCCCEEEEEeCC--------
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-----SILTMKFSLDGQYLASGGED--------  305 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~-----~I~~l~fspdg~~LaSgs~D--------  305 (519)
                      .+++|+|+|.+++++  +|.|++|++..+...       ..+.+|..     ....+.|||||++|+.++.+        
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceE-------EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            357999999999886  999999998865532       12344432     33458999999999999876        


Q ss_pred             -CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc-----ccc
Q 010037          306 -GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-----LEK  379 (519)
Q Consensus       306 -g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-----~~~  379 (519)
                       +.+.+||+.+++... +..+........|++++...++..                 +..+.+++......     .+.
T Consensus        91 ~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-----------------~~~i~~~~~~~~~~~~lt~~g~  152 (740)
T 4a5s_A           91 TASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-----------------NNDIYVKIEPNLPSYRITWTGK  152 (740)
T ss_dssp             EEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-----------------TTEEEEESSTTSCCEECCSCCB
T ss_pred             ceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-----------------CCeEEEEECCCCceEEEcCCCC
Confidence             566799999988643 333334455566666654433321                 12233333321110     011


Q ss_pred             ceeEeeccC---------CCeeEEEEcCCC-eEEEEeCCC------------------------------------cEEE
Q 010037          380 PLHEFQGHS---------SEVLDLSWSKNG-FLLSSSADK------------------------------------TVRL  413 (519)
Q Consensus       380 ~~~~~~~h~---------~~V~~l~~sp~~-~L~sgs~Dg------------------------------------~V~l  413 (519)
                      ....+.++.         +....+.|+|+| .|+.++.|.                                    +|++
T Consensus       153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v  232 (740)
T 4a5s_A          153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV  232 (740)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence            111233333         223458999999 787765332                                    4888


Q ss_pred             EECCC---C---eEEEEec------CCCcEEEEEEeeCCCCEEEEEeC----CCeEEEEEcCCCc----EE---ee--cc
Q 010037          414 WQVGI---D---RCLRVFS------HNNYVTSVAFNPVDDNYFISGSI----DGKVRIWEVRRCQ----VV---DY--TD  468 (519)
Q Consensus       414 Wdl~~---~---~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~----Dg~V~iwd~~~~~----~~---~~--~~  468 (519)
                      ||+.+   +   +......      |...+..++|+| +++.++....    +..|++||+.+++    +.   ..  ..
T Consensus       233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~  311 (740)
T 4a5s_A          233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS  311 (740)
T ss_dssp             EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC
T ss_pred             EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc
Confidence            99998   7   4444432      778899999999 8886665432    3479999999887    22   11  33


Q ss_pred             CCCceE-----EEEEeeCCCEEE-EEec-CC--eEEEEECCCCeeeecccc
Q 010037          469 IREIVS-----AVCYCPDGKGGI-VGTM-TG--NCRFYDIKGMQIFDLSTT  510 (519)
Q Consensus       469 ~~~~V~-----~v~~spdg~~l~-sgs~-dg--~v~iwdl~~~~l~~~~~~  510 (519)
                      +...|.     .++|+|||+.|+ ..+. +|  .|++||+.+++..++...
T Consensus       312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g  362 (740)
T 4a5s_A          312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG  362 (740)
T ss_dssp             SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS
T ss_pred             CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC
Confidence            444443     788999999877 6653 34  588899988877766544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.59  E-value=2.7e-13  Score=136.04  Aligned_cols=237  Identities=13%  Similarity=0.135  Sum_probs=143.6

Q ss_pred             cCCCCeEEeee----cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeccc
Q 010037          244 KPGDHELTLGQ----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWKVIE  315 (519)
Q Consensus       244 sp~g~~lasgs----~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D----g~I~iWd~~~  315 (519)
                      .+...++++|+    .++.|.+|.+......+...   ..+  |...+..++|+|+|++|++++.+    +.|.+|++..
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~---~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~   84 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPL---SDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK   84 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEE---EEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEe---ecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence            33444555653    45789999886433222211   122  66778889999999999999886    7999999876


Q ss_pred             --Ceeec--eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE--e-----
Q 010037          316 --HERLD--GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE--F-----  384 (519)
Q Consensus       316 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~-----  384 (519)
                        ++...  ........+..+.+   ....++....              .++.+.+|+.............  .     
T Consensus        85 ~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~--------------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~  147 (361)
T 3scy_A           85 EKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANY--------------SGGSITVFPIGQDGALLPASDVIEFKGSGP  147 (361)
T ss_dssp             TTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEET--------------TTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred             CCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEEC--------------CCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence              33222  22211222222222   2222222221              2233333332211110111110  0     


Q ss_pred             ---eccCCCeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCe-------E-------EEEecCCCcEEEEEEeeCCCCEEE
Q 010037          385 ---QGHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDR-------C-------LRVFSHNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       385 ---~~h~~~V~~l~~sp~~-~L~sgs-~Dg~V~lWdl~~~~-------~-------~~~~~h~~~V~~v~fsp~d~~~l~  445 (519)
                         ..+...+.+++|+|+| +|++++ .++.|++|++....       .       .....+...+..++|+| ++++++
T Consensus       148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~  226 (361)
T 3scy_A          148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAY  226 (361)
T ss_dssp             CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEE
T ss_pred             CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEE
Confidence               1123346889999999 565554 58999999887543       1       22233566789999999 898887


Q ss_pred             EEe-CCCeEEEEEcCCCcEEe---e---ccCCCceEEEEEeeCCCEEEEEecC--CeEEEEECC--CCe
Q 010037          446 SGS-IDGKVRIWEVRRCQVVD---Y---TDIREIVSAVCYCPDGKGGIVGTMT--GNCRFYDIK--GMQ  503 (519)
Q Consensus       446 sgs-~Dg~V~iwd~~~~~~~~---~---~~~~~~V~~v~~spdg~~l~sgs~d--g~v~iwdl~--~~~  503 (519)
                      +++ .++.|.+|++.++++..   .   ..+...+..++|+|||++|+++..+  +.|.+|++.  +++
T Consensus       227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~  295 (361)
T 3scy_A          227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT  295 (361)
T ss_dssp             EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred             EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence            776 68999999998775431   1   2233457899999999998776654  889999985  454

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.57  E-value=1.3e-12  Score=126.66  Aligned_cols=240  Identities=10%  Similarity=0.138  Sum_probs=155.6

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEE-ccCCCEEEEEeC-CCcEEEEe
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF-SLDGQYLASGGE-DGTVRVWK  312 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~LaSgs~-Dg~I~iWd  312 (519)
                      .....+++++|++.++++...++.|.+|+.....  ...+.....-.+|...+..+++ .++++++++... ++.|++|+
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            3445568999999988888889999999976322  1111100001235567899999 467776666643 88999999


Q ss_pred             cccCeeeceeeccC-CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee--ccCC
Q 010037          313 VIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ--GHSS  389 (519)
Q Consensus       313 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~h~~  389 (519)
                       .+++.+..+.... ..+..+.+.+.  ..++...              .....+..++..     .+.+..+.  ++..
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~--------------~~~~~i~~~~~~-----g~~~~~~~~~~~~~  164 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVE--------------CKVMRVIIFDQN-----GNVLHKFGCSKHLE  164 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEE--------------TTTTEEEEECTT-----SCEEEEEECTTTCS
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCC--CCEEEEE--------------CCCCEEEEEcCC-----CCEEEEeCCCCccC
Confidence             5566554443221 12333333332  2233222              122344444432     12233332  3456


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecC---CCcEEEEEEeeCCCCEEEEEeCCC-eEEEEEcCCCcEE
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQVV  464 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h---~~~V~~v~fsp~d~~~l~sgs~Dg-~V~iwd~~~~~~~  464 (519)
                      .+.+|++++++ ++++...++.|++||.. ++.+..+..   ...+..|+++| +++++++...++ .|.+||.....+.
T Consensus       165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~  242 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLIS  242 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEE
T ss_pred             CcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEE
Confidence            78999999999 66666778999999974 556666652   36789999999 889888888776 9999996543333


Q ss_pred             eeccC--CCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          465 DYTDI--REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       465 ~~~~~--~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .+..+  ...+.+++++|+|+++++ +.++.|++|++..
T Consensus       243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          243 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            33332  234789999999986666 6799999999854

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.56  E-value=4.5e-13  Score=132.04  Aligned_cols=211  Identities=11%  Similarity=0.085  Sum_probs=141.4

Q ss_pred             cccceeecCCCCeEEeee------------cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC
Q 010037          237 RHGSATLKPGDHELTLGQ------------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs------------~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~  304 (519)
                      .+..++|+|+|++++++.            .++.|.+|+.......       ..+.. ...+.+++|+|+|++|+++  
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~-~~~~~~~~~s~dg~~l~~~--  152 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR-------KAFEA-PRQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE-------EEEEC-CSSCCCEEECTTSSCEEEE--
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE-------EEEeC-CCCcceeEECCCCCEEEEe--
Confidence            455689999999998886            5799999998754321       12222 3457889999999988888  


Q ss_pred             CCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeecc---------CCCeeEEEeCCcccc
Q 010037          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK---------SSDLTCVVLPPKVFR  375 (519)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------s~~~~~~~~~~~~~~  375 (519)
                      ++.|.+||+.+++....+....... ...+.++.... +.................         .....+.+++.....
T Consensus       153 ~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  230 (337)
T 1pby_B          153 GRDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAV-WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             SSSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCC-CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             CCeEEEEECCCCcEeeeeeccccCC-CceeCCCccEE-eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence            6899999999998776665443111 11233332211 111111110000000000         001134555554433


Q ss_pred             ccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       376 ~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                      ..   ...+..+...+.+++|+|++ +|+++  ++.|.+||+.+++.+..+.....+.+++|+| ++++|++++.++.|+
T Consensus       231 ~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~  304 (337)
T 1pby_B          231 MA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLA  304 (337)
T ss_dssp             EE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECT-TSCEEEEESBSSEEE
T ss_pred             ce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECC-CCCEEEEEcCCCcEE
Confidence            21   23345566788899999999 77777  7999999999999998888777889999999 899999888899999


Q ss_pred             EEEcCCCcEEe
Q 010037          455 IWEVRRCQVVD  465 (519)
Q Consensus       455 iwd~~~~~~~~  465 (519)
                      +||+.+++.+.
T Consensus       305 v~d~~~~~~~~  315 (337)
T 1pby_B          305 AYDAETLEKKG  315 (337)
T ss_dssp             EEETTTCCEEE
T ss_pred             EEECcCCcEEE
Confidence            99999988774

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.53  E-value=4.9e-13  Score=133.30  Aligned_cols=181  Identities=12%  Similarity=0.192  Sum_probs=126.1

Q ss_pred             cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---CCcEEEEecccCeeeceeeccCCCCce
Q 010037          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSC  331 (519)
Q Consensus       255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~  331 (519)
                      .++.|.+|.+......+...    ....+...+..++|+|+|+ |++++.   ++.|.+|++.++...            
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------   76 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------   76 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred             CCCCEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence            45678888886433222211    2234556778899999999 555544   689999999665421            


Q ss_pred             EEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe-CCC
Q 010037          332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADK  409 (519)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs-~Dg  409 (519)
                                                                      .+..+..+...+..++|+|++ +|++++ .++
T Consensus        77 ------------------------------------------------~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~  108 (347)
T 3hfq_A           77 ------------------------------------------------KLNTVVAPGTPPAYVAVDEARQLVYSANYHKG  108 (347)
T ss_dssp             ------------------------------------------------EEEEEEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred             ------------------------------------------------EeeeeecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence                                                            022233456678899999999 777777 789


Q ss_pred             cEEEEECCC-C--eEEEEecCC----------CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC-CCcEEe----eccCCC
Q 010037          410 TVRLWQVGI-D--RCLRVFSHN----------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVD----YTDIRE  471 (519)
Q Consensus       410 ~V~lWdl~~-~--~~~~~~~h~----------~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~-~~~~~~----~~~~~~  471 (519)
                      .|.+|++.. +  ..+..+.+.          ..+.+++|+| +++++++...++.|++|++. ++++..    ......
T Consensus       109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  187 (347)
T 3hfq_A          109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF  187 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred             EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence            999999963 2  333443322          2488999999 88877777778999999998 555432    122334


Q ss_pred             ceEEEEEeeCCCEEEE-EecCCeEEEEECCC
Q 010037          472 IVSAVCYCPDGKGGIV-GTMTGNCRFYDIKG  501 (519)
Q Consensus       472 ~V~~v~~spdg~~l~s-gs~dg~v~iwdl~~  501 (519)
                      .+..++|+|||++|++ +..++.|++|++..
T Consensus       188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            6788999999996666 55688999999873

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.52  E-value=2.6e-13  Score=149.18  Aligned_cols=251  Identities=10%  Similarity=0.032  Sum_probs=158.7

Q ss_pred             ccceeecCCCCeEEeeec---------CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          238 HGSATLKPGDHELTLGQR---------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~---------dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      +.+++|+|||++|++++.         ++.|++|++..+.....     ..+   ...+..++|||||++||.+. |+.|
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-----~~l---~~~~~~~~~SPDG~~la~~~-~~~i  132 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-----NEL---PRPIQYLCWSPVGSKLAYVY-QNNI  132 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----SCC---CSSBCCEEECSSTTCEEEEE-TTEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-----eec---CcccccceECCCCCEEEEEE-CCeE
Confidence            456899999999998876         78999999976543100     011   24688899999999999886 7899


Q ss_pred             EEEecccCeeeceeeccCC------------------CCceEEEeecCCCCeEEeeccCCceeeee--------------
Q 010037          309 RVWKVIEHERLDGFDVQDT------------------DPSCLYFTINHLSQLIPIDVDKEKIDKTK--------------  356 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  356 (519)
                      ++|++.+++..........                  ....+.|++++...++... +........              
T Consensus       133 ~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~-d~~~~~~~~~~~~~~~~~~~~~~  211 (719)
T 1z68_A          133 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF-NDTDIPVIAYSYYGDEQYPRTIN  211 (719)
T ss_dssp             EEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE-ECTTSCEEEEEECCSSSSCEEEE
T ss_pred             EEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE-CCCCCceEEeeccCCCCCcccee
Confidence            9999988775432211111                  1135667766544333222 111100000              


Q ss_pred             ---ee--ccCCCeeEEEeCCcccccc----ccceeEeeccCCCeeEEEEcCCC-eEEEEeCC----CcEEEEE----CCC
Q 010037          357 ---SL--RKSSDLTCVVLPPKVFRLL----EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----KTVRLWQ----VGI  418 (519)
Q Consensus       357 ---~~--~~s~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D----g~V~lWd----l~~  418 (519)
                         ..  .......+.+|+.......    -.....+.+|...+..++|+|++ ++++....    ..|.+||    +.+
T Consensus       212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~  291 (719)
T 1z68_A          212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT  291 (719)
T ss_dssp             EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS
T ss_pred             ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC
Confidence               00  0112235556665443221    00002234688889999999999 55554332    2488999    888


Q ss_pred             CeEEEEe-----cCCCcEE-----EEEEeeCCCCEEE--EEeCCC--eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCE
Q 010037          419 DRCLRVF-----SHNNYVT-----SVAFNPVDDNYFI--SGSIDG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG  484 (519)
Q Consensus       419 ~~~~~~~-----~h~~~V~-----~v~fsp~d~~~l~--sgs~Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~  484 (519)
                      +++...+     .|...+.     .+.|+| +++.|+  +...+|  .|.+||+.+++...+..+...+..+.+. +++.
T Consensus       292 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~  369 (719)
T 1z68_A          292 WDCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDS  369 (719)
T ss_dssp             EECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSE
T ss_pred             CceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCE
Confidence            7766554     3666666     889999 777544  344555  5777888887766666666678888777 8888


Q ss_pred             EEEEecC-----CeEEEEECC
Q 010037          485 GIVGTMT-----GNCRFYDIK  500 (519)
Q Consensus       485 l~sgs~d-----g~v~iwdl~  500 (519)
                      |+..+.+     +.+++|.+.
T Consensus       370 i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          370 LFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             EEEEESCGGGCTTCBEEEEEE
T ss_pred             EEEEEecCCCCCceEEEEEEe
Confidence            7776665     778888765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.51  E-value=1.3e-12  Score=131.97  Aligned_cols=252  Identities=9%  Similarity=-0.007  Sum_probs=151.7

Q ss_pred             ccceeecCCCCeEEeeecC---CeEEEeeCCccccccccccccceeecCCCC-EEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          238 HGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~d---g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      +..++|+|+|++|+.....   ..|.+|+.......        .+..+... +..+.|+|||++|+.++.++.|++|++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~  109 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDL  109 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEET
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------EeecCCCCccccceECCCCCEEEEEEcCCcEEEEEC
Confidence            5568999999998876443   46888887654321        11222222 233789999999999999999999999


Q ss_pred             ccCeeeceeeccCCCCce-EEEeecCCCCeEEe-----eccCCceeeeeee----ccCCCeeEEEeCCccccccccceeE
Q 010037          314 IEHERLDGFDVQDTDPSC-LYFTINHLSQLIPI-----DVDKEKIDKTKSL----RKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      .+++.......+...... ..+...........     ......  ....+    .......+.+++....     ....
T Consensus       110 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~l~~~d~~~g-----~~~~  182 (396)
T 3c5m_A          110 ETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT--SWEKFAEFYHTNPTCRLIKVDIETG-----ELEV  182 (396)
T ss_dssp             TTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC--SHHHHHHHHHTCCCEEEEEEETTTC-----CEEE
T ss_pred             CCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC--cceeeeeeccCCCcceEEEEECCCC-----cEEe
Confidence            887754444322220000 00000000000000     000000  00000    1133445556654432     1233


Q ss_pred             eeccCCCeeEEEEcC-CC-eEEEEeCC------CcEEEEECCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCC---
Q 010037          384 FQGHSSEVLDLSWSK-NG-FLLSSSAD------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSID---  450 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp-~~-~L~sgs~D------g~V~lWdl~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~D---  450 (519)
                      +..+...+..+.|+| ++ .|+..+.+      ..|.+||+.+++......+  ...+..++|+| ++++|+.++.+   
T Consensus       183 ~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~  261 (396)
T 3c5m_A          183 IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQ  261 (396)
T ss_dssp             EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTT
T ss_pred             eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCC
Confidence            345677899999999 67 66665543      4688999877654444333  23688899999 88877766543   


Q ss_pred             --CeEEEEEcCCCcEEeeccCCCceEEEEEee-CCCEEEEEe----------------cCCeEEEEECCCCeeeec
Q 010037          451 --GKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGT----------------MTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       451 --g~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~sgs----------------~dg~v~iwdl~~~~l~~~  507 (519)
                        +.|++||+.+++......... .. +.|+| ||++|++++                .++.|++||+.++++..+
T Consensus       262 ~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  335 (396)
T 3c5m_A          262 TDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL  335 (396)
T ss_dssp             CCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred             ccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence              459999999887654433322 33 89999 999888765                347899999988876544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.51  E-value=7.4e-12  Score=124.30  Aligned_cols=238  Identities=11%  Similarity=0.076  Sum_probs=160.1

Q ss_pred             ecccceeecCCCCeEEeeecC------------------------CeEEEeeCCcccccccccccccee-ecCCCCEEEE
Q 010037          236 DRHGSATLKPGDHELTLGQRM------------------------RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTM  290 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~d------------------------g~I~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l  290 (519)
                      ..+..++++|+|+++++...+                        ++|.+|+.......       ..+ .++-.....|
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~p~gi   96 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------QSSGKNLFYLPHGL   96 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------EEECTTTCSSEEEE
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------eccCCCccCCceEE
Confidence            445678999999999888777                        47899987644321       111 1345678999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEecccCe-eeceeec---------cCCCCceEEEeecCCCCeEEeeccCCceeeeeeecc
Q 010037          291 KFSLDGQYLASGGEDGTVRVWKVIEHE-RLDGFDV---------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (519)
Q Consensus       291 ~fspdg~~LaSgs~Dg~I~iWd~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (519)
                      +++|+|+++++...++.|++|+..... .+..+..         ....+..+.+.+. ...++....             
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~-------------  162 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDG-------------  162 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEEC-------------
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeC-------------
Confidence            999999988888889999999985442 2333311         1112223333321 122222221             


Q ss_pred             CCCeeEEEeCCccccccccceeEee----------ccCCCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEec--
Q 010037          361 SSDLTCVVLPPKVFRLLEKPLHEFQ----------GHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS--  426 (519)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--  426 (519)
                      .....+..++..     +..+..+.          ++......|+++|+ + ++++...++.|++|+..+++.+..+.  
T Consensus       163 ~~~~~I~~~~~~-----g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          163 YCNSRIVQFSPS-----GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             SSCCEEEEECTT-----SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             CCCCeEEEEcCC-----CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            022334444321     12222222          22345889999998 6 66777788999999999899988884  


Q ss_pred             -CCCcEEEEEEeeCCCCEEEEE-------eCCCeEEEEEcCCCcEEeec----cCCCceEEEEEeeCCCEEEEEecCCeE
Q 010037          427 -HNNYVTSVAFNPVDDNYFISG-------SIDGKVRIWEVRRCQVVDYT----DIREIVSAVCYCPDGKGGIVGTMTGNC  494 (519)
Q Consensus       427 -h~~~V~~v~fsp~d~~~l~sg-------s~Dg~V~iwd~~~~~~~~~~----~~~~~V~~v~~spdg~~l~sgs~dg~v  494 (519)
                       +...+..++|+|  +..+++.       ..+..|++||+.+++++...    .+...+..++++|+|.++++...++.|
T Consensus       238 ~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I  315 (329)
T 3fvz_A          238 SFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV  315 (329)
T ss_dssp             TTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred             ccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence             567789999998  3333333       23458999999999988653    456678999999999888888889999


Q ss_pred             EEEECCC
Q 010037          495 RFYDIKG  501 (519)
Q Consensus       495 ~iwdl~~  501 (519)
                      ++|++..
T Consensus       316 ~~~~~~~  322 (329)
T 3fvz_A          316 WKFTLTE  322 (329)
T ss_dssp             EEEEEEE
T ss_pred             EEEeCCc
Confidence            9999864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.48  E-value=1.2e-12  Score=129.80  Aligned_cols=193  Identities=10%  Similarity=0.083  Sum_probs=132.4

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCC-CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE
Q 010037          289 TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV  367 (519)
Q Consensus       289 ~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  367 (519)
                      .+++++++.++++++.++.|++||+.+++....+..+.. .+..+.+.++.. .++..              ...+..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~--------------~~~~~~i~   68 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR-TAYVL--------------NNHYGDIY   68 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS-EEEEE--------------ETTTTEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCC-EEEEE--------------eCCCCcEE
Confidence            356788889999999999999999999988777765431 344555544432 12211              12334455


Q ss_pred             EeCCccccccccceeEeecc------CCCeeEEEEcCCC-eEEEEeCC------------CcEEEEECCCC---eEEEEe
Q 010037          368 VLPPKVFRLLEKPLHEFQGH------SSEVLDLSWSKNG-FLLSSSAD------------KTVRLWQVGID---RCLRVF  425 (519)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~h------~~~V~~l~~sp~~-~L~sgs~D------------g~V~lWdl~~~---~~~~~~  425 (519)
                      +|+....    +.+..+..+      ...+.+++|+|+| +|++++.+            +.|.+||+.++   +.+..+
T Consensus        69 ~~d~~t~----~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  144 (349)
T 1jmx_B           69 GIDLDTC----KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF  144 (349)
T ss_dssp             EEETTTT----EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred             EEeCCCC----cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence            5554432    222233322      2347899999999 88887755            89999999884   444556


Q ss_pred             cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC-----------------------------------
Q 010037          426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-----------------------------------  470 (519)
Q Consensus       426 ~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-----------------------------------  470 (519)
                      .+...+.+++|+| +++ +++++  +.|++||+.+++.+......                                   
T Consensus       145 ~~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (349)
T 1jmx_B          145 PMPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK  220 (349)
T ss_dssp             ECCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred             cCCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC
Confidence            6666799999999 888 55554  34999999988766322111                                   


Q ss_pred             ----------------------------------CceEEEEEee-CCCEEEEEecCCeEEEEECCCCeeee
Q 010037          471 ----------------------------------EIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       471 ----------------------------------~~V~~v~~sp-dg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                                                        ..+..++|+| ||++|+++  ++.|.+||+.++++..
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~  289 (349)
T 1jmx_B          221 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK  289 (349)
T ss_dssp             ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred             CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence                                              1345677889 99999888  8899999999987654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.47  E-value=1.2e-12  Score=142.29  Aligned_cols=191  Identities=10%  Similarity=0.044  Sum_probs=136.6

Q ss_pred             cCCCCe-EEeeec-CCeEEEeeCC--c-cccccccccccceeec-----CCCCEEEEEEccCCCEEEEEeCC--------
Q 010037          244 KPGDHE-LTLGQR-MRRVRVHPVK--K-QSRELSSLYTGQEFLA-----HEGSILTMKFSLDGQYLASGGED--------  305 (519)
Q Consensus       244 sp~g~~-lasgs~-dg~I~vw~~~--~-~~~~~~~~~~~~~l~~-----H~~~I~~l~fspdg~~LaSgs~D--------  305 (519)
                      +|||+. |+.+.. +..|.+++..  . ..  .      +.+..     |...+..++|+|||++|++++.|        
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~--~------~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV--P------RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCC--C------EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCC--C------EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence            499998 766543 5667777764  1 11  1      12223     66778999999999999998876        


Q ss_pred             --CcEEEEeccc------CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccc
Q 010037          306 --GTVRVWKVIE------HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL  377 (519)
Q Consensus       306 --g~I~iWd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  377 (519)
                        ..|++|++.+      ++.                                                           
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~~-----------------------------------------------------------  179 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSAV-----------------------------------------------------------  179 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGGS-----------------------------------------------------------
T ss_pred             ceeEEEEEECCCCccccCCce-----------------------------------------------------------
Confidence              4788888765      221                                                           


Q ss_pred             ccceeEee-ccCCCeeEEEEcCCC-eEEEEeCC--------CcEEEEECC-CC---eEEEEec-CCCcEEEEEEeeCCCC
Q 010037          378 EKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSAD--------KTVRLWQVG-ID---RCLRVFS-HNNYVTSVAFNPVDDN  442 (519)
Q Consensus       378 ~~~~~~~~-~h~~~V~~l~~sp~~-~L~sgs~D--------g~V~lWdl~-~~---~~~~~~~-h~~~V~~v~fsp~d~~  442 (519)
                          ..+. .+...+..++|+|+| +|+.++.+        ..|++||+. ++   +...... +...+..+.|+| +++
T Consensus       180 ----~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~  254 (662)
T 3azo_A          180 ----RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGS  254 (662)
T ss_dssp             ----EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSC
T ss_pred             ----eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCe
Confidence                1122 334567788999999 78777654        379999999 56   4444444 578899999999 888


Q ss_pred             EEEEEeCCC--eEEEEEcCCCcEEeeccCCCc---------eEEEEEeeCCCEEEEEecCCeEEEE--ECCCCeeeec
Q 010037          443 YFISGSIDG--KVRIWEVRRCQVVDYTDIREI---------VSAVCYCPDGKGGIVGTMTGNCRFY--DIKGMQIFDL  507 (519)
Q Consensus       443 ~l~sgs~Dg--~V~iwd~~~~~~~~~~~~~~~---------V~~v~~spdg~~l~sgs~dg~v~iw--dl~~~~l~~~  507 (519)
                      +++++..++  .|.+||+.+++...+..+...         +..++|+|+++++++++. +.++||  |+.++++..+
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l  331 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA  331 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence            888888888  677777767776654433222         467899999999999998 998888  7777766554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.46  E-value=1.8e-11  Score=119.15  Aligned_cols=244  Identities=11%  Similarity=0.053  Sum_probs=158.2

Q ss_pred             ceeecCCCC-eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037          240 SATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       240 ~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      +++|+|+++ +++++..++.|.+|+.... .        +.+..+...+.+++++++|+++++...++.|.+||..+++.
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~--------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L--------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC-E--------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC-e--------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence            479999998 7888889999999998754 1        23455677899999999999888777778999999977765


Q ss_pred             eceeeccC----CCCceEEEeecCCCCeEEeeccCCcee---eeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          319 LDGFDVQD----TDPSCLYFTINHLSQLIPIDVDKEKID---KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       319 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      ........    ..+..+.+.+.  ..++..........   ............+..++..      ..+..+..+....
T Consensus       103 ~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------g~~~~~~~~~~~~  174 (296)
T 3e5z_A          103 ESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------GTLSAPIRDRVKP  174 (296)
T ss_dssp             EEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------SCEEEEECCCSSE
T ss_pred             EEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCC------CCEEEeecCCCCC
Confidence            33221111    11223333332  22222111000000   0000000112244444432      1123344566678


Q ss_pred             eEEEEcCCC-eEEEEeCCCcEEEEECC-CCeE---EEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-
Q 010037          392 LDLSWSKNG-FLLSSSADKTVRLWQVG-IDRC---LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs~Dg~V~lWdl~-~~~~---~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-  464 (519)
                      ..++|+|++ .|++.+.++.|.+|++. .++.   ...+. +...+.++++++ +++++++.  ++.|.+||.. ++.+ 
T Consensus       175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~~~~  250 (296)
T 3e5z_A          175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD-GDELG  250 (296)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT-SCEEE
T ss_pred             ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC-CCEEE
Confidence            899999999 66777888999999997 4544   33332 455677899999 88877666  8899999997 5554 


Q ss_pred             eeccCCCceEEEEE-eeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          465 DYTDIREIVSAVCY-CPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       465 ~~~~~~~~V~~v~~-spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .+..+.. +++++| .|+++.|++++.+ .+.-+++.+.+++.
T Consensus       251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLEH  291 (296)
T ss_dssp             EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCCC
T ss_pred             EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccccc
Confidence            4554555 899999 5899989988875 56667787777654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.46  E-value=1.6e-11  Score=123.65  Aligned_cols=246  Identities=11%  Similarity=0.097  Sum_probs=141.3

Q ss_pred             eEEeeecC--CeEEEeeCCcccccccccccccee-ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc-cCeeeceeec
Q 010037          249 ELTLGQRM--RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDV  324 (519)
Q Consensus       249 ~lasgs~d--g~I~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~-~~~~~~~~~~  324 (519)
                      .+++|+..  +.|.+|++......+...   ... .++...+..++|+|+|++|++++.+ .|.+|++. +++.......
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~---~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~   79 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLI---KRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH   79 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEE---EEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEe---eEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe
Confidence            34555543  568888764322222111   111 1234467889999999999999888 99999997 6765432221


Q ss_pred             cC-CCCceEEEeecCCCCeEEeeccCCceeeeeeeccC----CCeeEEEeCCcc-ccccccceeEee-ccCCCeeEEEEc
Q 010037          325 QD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS----SDLTCVVLPPKV-FRLLEKPLHEFQ-GHSSEVLDLSWS  397 (519)
Q Consensus       325 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~~-~~~~~~~~~~~~-~h~~~V~~l~~s  397 (519)
                      .. ..+..+.+.++... ++.+........   . ...    .++.+.+|+... ..+. ..+..+. .+...+.+++|+
T Consensus        80 ~~~g~~~~~~~spdg~~-l~~~~~~~~~~~---~-~~~~~~~~~g~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~s  153 (365)
T 1jof_A           80 PIGGHPRANDADTNTRA-IFLLAAKQPPYA---V-YANPFYKFAGYGNVFSVSETGKLE-KNVQNYEYQENTGIHGMVFD  153 (365)
T ss_dssp             ECCSSGGGGCTTSCCEE-EEEEECSSTTCC---E-EEEEESSSCCEEEEEEECTTCCEE-EEEEEEECCTTCCEEEEEEC
T ss_pred             ecCCCCccEEECCCCCE-EEEEEecCCcce---e-ccceeecCCceEEEEccCCCCcCc-ceEeeEEeCCCCcceEEEEC
Confidence            10 11222222222211 011111000000   0 000    233344443321 1110 1111111 255679999999


Q ss_pred             CCC-eEEEEe-CCCcEEEEECC-CCeEE--EEec---CCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEEcC--CCcEE--
Q 010037          398 KNG-FLLSSS-ADKTVRLWQVG-IDRCL--RVFS---HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVR--RCQVV--  464 (519)
Q Consensus       398 p~~-~L~sgs-~Dg~V~lWdl~-~~~~~--~~~~---h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~--~~~~~--  464 (519)
                      |+| +|+++. .++.|++|++. +++..  ..+.   |...+..++|+| +++++++++. ++.|.+|++.  +++..  
T Consensus       154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~  232 (365)
T 1jof_A          154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYT  232 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence            999 777665 46899999998 67653  2332   366799999999 8988887775 7899999875  45432  


Q ss_pred             --ee--c-----cCCC------ceEEEE-EeeCCCEEEEEecCC------eEEEEECC-CCeee
Q 010037          465 --DY--T-----DIRE------IVSAVC-YCPDGKGGIVGTMTG------NCRFYDIK-GMQIF  505 (519)
Q Consensus       465 --~~--~-----~~~~------~V~~v~-~spdg~~l~sgs~dg------~v~iwdl~-~~~l~  505 (519)
                        ..  .     ++..      .+..++ |+|||++|+++..+.      .|.+|++. ++++.
T Consensus       233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence              11  1     1121      588999 999999988776432      89999996 56654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.43  E-value=3.1e-11  Score=119.94  Aligned_cols=233  Identities=8%  Similarity=0.088  Sum_probs=146.5

Q ss_pred             cccceeecCCCCeEEeeecC---C--eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC------
Q 010037          237 RHGSATLKPGDHELTLGQRM---R--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------  305 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~d---g--~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D------  305 (519)
                      .+...+|+|+|++||..+.+   +  .|.+|++..+...        .+..+.. +..+.|+|||+.|+.++.+      
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~--------~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~  130 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK--------KILEAKN-IRSLEWNEDSRKLLIVGFKRREDED  130 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE--------EEEEESE-EEEEEECTTSSEEEEEEECCCC---
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE--------EEEcCCC-ccceeECCCCCEEEEEEccCCCcCC
Confidence            44567999999999887654   3  3677776543211        1222334 9999999999999888642      


Q ss_pred             ---------------------CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCe
Q 010037          306 ---------------------GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (519)
Q Consensus       306 ---------------------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (519)
                                           ..|.+|++.+++.+..+.. . ....+.|.++.  .++.........      ......
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~------~~~~~~  200 (347)
T 2gop_A          131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIP------QYFKFW  200 (347)
T ss_dssp             ------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSC------CSSCCE
T ss_pred             cEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccc------cccccc
Confidence                                 5789999988876444444 2 55566666554  222222111000      000012


Q ss_pred             eEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCC--------CcEEEEECCCCeEEEEec-CCCcEEE-
Q 010037          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD--------KTVRLWQVGIDRCLRVFS-HNNYVTS-  433 (519)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D--------g~V~lWdl~~~~~~~~~~-h~~~V~~-  433 (519)
                      .+..++  .     .....+..+ ..+..+  +|+| +|+.++.+        ..|.+||  +++...... +...+.. 
T Consensus       201 ~l~~~d--~-----~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~  268 (347)
T 2gop_A          201 DIYIWE--D-----GKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQA  268 (347)
T ss_dssp             EEEEEE--T-----TEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEE
T ss_pred             cEEEeC--C-----CceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCc
Confidence            233332  0     112223333 444444  8999 77766644        3688888  565544444 5677886 


Q ss_pred             EEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeE-EEEECCCCeeeec
Q 010037          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC-RFYDIKGMQIFDL  507 (519)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v-~iwdl~~~~l~~~  507 (519)
                      +.|+  ++ ++++++.++.++|| +.+++......+...|.+++|+|  .++++++.++.. .||.+. ++..++
T Consensus       269 ~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~l  336 (347)
T 2gop_A          269 KIKD--GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQL  336 (347)
T ss_dssp             EEET--TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEEC
T ss_pred             cEEc--Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEe
Confidence            8997  56 88899999999999 88777666666678899999999  677777777664 777665 544443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.43  E-value=1.3e-12  Score=142.17  Aligned_cols=207  Identities=11%  Similarity=0.010  Sum_probs=141.3

Q ss_pred             eecccceeecCCCCeEEee--ecCCeEEEeeCCccccccccccccceeecCCCCEE---------EEEEc--cCCCE-EE
Q 010037          235 IDRHGSATLKPGDHELTLG--QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL---------TMKFS--LDGQY-LA  300 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasg--s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~---------~l~fs--pdg~~-La  300 (519)
                      ...+..+++++++-+++..  ..+++..||.......       .+.+..|...+.         ...|+  |||++ |+
T Consensus        23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-------EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-------EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             CCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-------cceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            3455567888876666666  5588999998632211       123444555555         56666  99998 77


Q ss_pred             EEeC-CCcEEEEecc--c-CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc
Q 010037          301 SGGE-DGTVRVWKVI--E-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (519)
Q Consensus       301 Sgs~-Dg~I~iWd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (519)
                      .++. +..|.+|++.  . +.. ..+..                                                    
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~-~~l~~----------------------------------------------------  122 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVP-RPLTP----------------------------------------------------  122 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCC-EECSC----------------------------------------------------
T ss_pred             EEECCCCeEEEEcCCCCCCCCC-EeccC----------------------------------------------------
Confidence            6654 4455555553  1 221 00000                                                    


Q ss_pred             cccceeEeeccCCCeeEEEEcCCC-eEEEEeCC----------CcEEEEECCC------CeEEEEe-cCCCcEEEEEEee
Q 010037          377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----------KTVRLWQVGI------DRCLRVF-SHNNYVTSVAFNP  438 (519)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D----------g~V~lWdl~~------~~~~~~~-~h~~~V~~v~fsp  438 (519)
                           .....|...+..++|+|+| .|++++.+          ..|++||+.+      ++..... .+...+..++|+|
T Consensus       123 -----~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp  197 (662)
T 3azo_A          123 -----VSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP  197 (662)
T ss_dssp             -----CCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT
T ss_pred             -----CccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC
Confidence                 0000145668899999999 88888776          5899999998      6665555 5667889999999


Q ss_pred             CCCCEEEEEeCC--------CeEEEEEcC-CC---cEEeecc-CCCceEEEEEeeCCCEEEEEecCC--eEEEEECCCCe
Q 010037          439 VDDNYFISGSID--------GKVRIWEVR-RC---QVVDYTD-IREIVSAVCYCPDGKGGIVGTMTG--NCRFYDIKGMQ  503 (519)
Q Consensus       439 ~d~~~l~sgs~D--------g~V~iwd~~-~~---~~~~~~~-~~~~V~~v~~spdg~~l~sgs~dg--~v~iwdl~~~~  503 (519)
                       |+++|+.++.+        ..|++||+. ++   +...+.. +...+..++|+|||++++++..+|  .|.+||+.+++
T Consensus       198 -DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~  276 (662)
T 3azo_A          198 -DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA  276 (662)
T ss_dssp             -TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred             -CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence             99999887755        379999999 56   4444443 467899999999999888888888  67778877776


Q ss_pred             eeec
Q 010037          504 IFDL  507 (519)
Q Consensus       504 l~~~  507 (519)
                      +.++
T Consensus       277 ~~~l  280 (662)
T 3azo_A          277 ATQL  280 (662)
T ss_dssp             EEES
T ss_pred             eeec
Confidence            6554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.43  E-value=1.9e-11  Score=123.10  Aligned_cols=232  Identities=10%  Similarity=0.082  Sum_probs=141.7

Q ss_pred             ceeecCCCCeEEeee----------cCCeEEEeeCCccccccccccccceeec------CCCCEEEEEEccCCCEEEEEe
Q 010037          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLA------HEGSILTMKFSLDGQYLASGG  303 (519)
Q Consensus       240 ~~~~sp~g~~lasgs----------~dg~I~vw~~~~~~~~~~~~~~~~~l~~------H~~~I~~l~fspdg~~LaSgs  303 (519)
                      .++|+|+|++++++.          .++.|.+||......       .+++..      +......++|+|||++|+++.
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-------~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n  126 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-------EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN  126 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-------EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-------EEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence            579999999999876          367899999864332       112221      224466799999999999886


Q ss_pred             C--CCcEEEEecccCeeece-eeccCC------C-CceEEEeecCCCCeEEeeccC-Ccee-ee----------------
Q 010037          304 E--DGTVRVWKVIEHERLDG-FDVQDT------D-PSCLYFTINHLSQLIPIDVDK-EKID-KT----------------  355 (519)
Q Consensus       304 ~--Dg~I~iWd~~~~~~~~~-~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----------------  355 (519)
                      .  ++.|.+||+.+++.+.. +.....      + .....+.......+..+.... .+.. ..                
T Consensus       127 ~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~  206 (361)
T 2oiz_A          127 ASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIA  206 (361)
T ss_dssp             ESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSC
T ss_pred             CCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEE
Confidence            4  58999999999987766 443211      0 001111111122222222211 1111 00                


Q ss_pred             ------eeeccCCCeeEEEeCCccccccccceeEeec------c----CCCeeEEEEcCCC-eEEEEeC-----------
Q 010037          356 ------KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG------H----SSEVLDLSWSKNG-FLLSSSA-----------  407 (519)
Q Consensus       356 ------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------h----~~~V~~l~~sp~~-~L~sgs~-----------  407 (519)
                            ..+..+.++.+.+++...-..  ..+..+..      +    ......++++|++ +++.+..           
T Consensus       207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~  284 (361)
T 2oiz_A          207 PALDKDKAHFVSYYGNVYSADFSGDEV--KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFP  284 (361)
T ss_dssp             CEECSSEEEEEBTTSEEEEEECSSSSC--EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCC
T ss_pred             ecccCCEEEEEeCCCeEEEEEecCCCc--eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCC
Confidence                  000001112233332211000  00001100      0    0112237899997 5555432           


Q ss_pred             CCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC--cEEee-ccCCCceEEEEEeeCCC
Q 010037          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVVDY-TDIREIVSAVCYCPDGK  483 (519)
Q Consensus       408 Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~--~~~~~-~~~~~~V~~v~~spdg~  483 (519)
                      ..+|.+||+.+++.+..+.-.. +.+|+|+| ++++|++++. +.|.+||..++  +++.. .........++++|+|.
T Consensus       285 ~~~v~viD~~t~~~v~~i~~~~-p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          285 AAEIWVMDTKTKQRVARIPGRD-ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CSEEEEEETTTTEEEEEEECTT-CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CceEEEEECCCCcEEEEEecCC-eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            3589999999999999988444 99999999 8999998886 99999999999  88866 57788889999999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.40  E-value=6e-10  Score=110.04  Aligned_cols=231  Identities=10%  Similarity=0.043  Sum_probs=144.1

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC----CcEEEEec
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWKV  313 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D----g~I~iWd~  313 (519)
                      ..+++|+|+|.+++++..++.|.+|+........       ....+...+.+++|+|+|+++++...+    +.|.+||.
T Consensus        47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-------~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-------PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-------EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-------EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            3457899999988888889999999986443211       122456789999999999988877666    68999998


Q ss_pred             ccCeeeceeecc--CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          314 IEHERLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       314 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      .++.....+...  ...+..+.+.+.  ..++.......        .......+..++....     .+..+..+...+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~--------~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~  184 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGY--------STNPLGGVYYVSPDFR-----TVTPIIQNISVA  184 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTT--SCEEEEECCCB--------TTBCCEEEEEECTTSC-----CEEEEEEEESSE
T ss_pred             CCCEEEEEEccCccCCcccceEECCC--CCEEEEecccc--------ccCCCceEEEEeCCCC-----EEEEeecCCCcc
Confidence            877643222211  112222333322  22222211100        0011234444443221     122222334457


Q ss_pred             eEEEEcCCC-eEE-EEeCCCcEEEEECCC-CeEEEE-----e---cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          392 LDLSWSKNG-FLL-SSSADKTVRLWQVGI-DRCLRV-----F---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       392 ~~l~~sp~~-~L~-sgs~Dg~V~lWdl~~-~~~~~~-----~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      ..++|+|++ .|+ +.+.++.|.+||+.+ +..+..     +   .....+..+++++ +++++++...++.|.+||.. 
T Consensus       185 ~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~-  262 (333)
T 2dg1_A          185 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKR-  262 (333)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTT-
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECC-CCCEEEEEcCCCEEEEECCC-
Confidence            899999998 554 445678999999964 322211     1   1124788999999 89988888888999999985 


Q ss_pred             CcEE-eeccCCC------ceEEEEEeeCCCEEEEEecCC
Q 010037          461 CQVV-DYTDIRE------IVSAVCYCPDGKGGIVGTMTG  492 (519)
Q Consensus       461 ~~~~-~~~~~~~------~V~~v~~spdg~~l~sgs~dg  492 (519)
                      ++.+ .+.....      .+.+++|+|||+.|++++.+|
T Consensus       263 g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          263 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            4444 3332222      688999999988887776664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=1.7e-11  Score=123.72  Aligned_cols=178  Identities=9%  Similarity=0.017  Sum_probs=131.2

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccc----cccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~----~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      .++.+++++...++++|+.++ ++||+.........    .+.. .....+.+ |+.|+|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            456689999999999999875 56698764331110    0111 12345677 999999  89999999 889999999


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      +.+.....                                                              ....|...+.
T Consensus       113 v~sl~~~~--------------------------------------------------------------~~~~~~~~v~  130 (388)
T 1xip_A          113 LEELSEFR--------------------------------------------------------------TVTSFEKPVF  130 (388)
T ss_dssp             SSSTTCEE--------------------------------------------------------------EEEECSSCEE
T ss_pred             chhhhccC--------------------------------------------------------------ccceeeccee
Confidence            87654211                                                              1122344456


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE--E-ee---
Q 010037          393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V-DY---  466 (519)
Q Consensus       393 ~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~--~-~~---  466 (519)
                      ++.+.+. .+++++.||.|.+||+..+....   +...|+|++|+| +|  ++.|..||+|++|+....++  . .+   
T Consensus       131 ~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P  203 (388)
T 1xip_A          131 QLKNVNN-TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP  203 (388)
T ss_dssp             EEEECSS-EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred             eEEecCC-CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCC
Confidence            6666554 38889999999999999887654   456899999999 77  78899999999999988774  2 22   


Q ss_pred             ---c---cCCCceEEEEEeeCCCEEEEEe
Q 010037          467 ---T---DIREIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       467 ---~---~~~~~V~~v~~spdg~~l~sgs  489 (519)
                         .   ++...|.+|+|.+++.++++-.
T Consensus       204 p~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          204 SELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             HHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cccccccCCCeeEEEEEEecCCeEEEEEc
Confidence               2   3678899999999999888733

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.36  E-value=4.1e-11  Score=118.47  Aligned_cols=193  Identities=10%  Similarity=0.057  Sum_probs=140.4

Q ss_pred             ecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      ..+.+++|+|++..++....++.+++|.-.          ....+..+...+.+++|+++|++++++..++.|.+||..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~   75 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE----------PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET   75 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE----------EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             cccceeeecCCccceeEEeecccCcccccc----------eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence            345678899999888887888888888321          1123456667789999999999888888899999999876


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      ++....                                                              ...+...+.+++
T Consensus        76 ~~~~~~--------------------------------------------------------------~~~~~~~~~~i~   93 (333)
T 2dg1_A           76 KEIKRP--------------------------------------------------------------FVSHKANPAAIK   93 (333)
T ss_dssp             CCEEEE--------------------------------------------------------------EECSSSSEEEEE
T ss_pred             CcEEEE--------------------------------------------------------------eeCCCCCcceEE
Confidence            642110                                                              112345689999


Q ss_pred             EcCCC-eEEEEeCC----CcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeC------CCeEEEEEcCCC
Q 010037          396 WSKNG-FLLSSSAD----KTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEVRRC  461 (519)
Q Consensus       396 ~sp~~-~L~sgs~D----g~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~------Dg~V~iwd~~~~  461 (519)
                      ++|++ ++++...+    +.|.+||..++.....+.   +...+++++++| +++++++...      .+.|..||..++
T Consensus        94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~  172 (333)
T 2dg1_A           94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR  172 (333)
T ss_dssp             ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCC
Confidence            99999 55555555    689999998877654442   456799999999 8888877654      356777777666


Q ss_pred             cEEeeccCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECCC
Q 010037          462 QVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKG  501 (519)
Q Consensus       462 ~~~~~~~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~~  501 (519)
                      +...+......+..++|+|+|+.|+++ +.++.|.+||+.+
T Consensus       173 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          173 TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            655444444567899999999866554 5678999999963

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.36  E-value=4e-11  Score=121.00  Aligned_cols=236  Identities=9%  Similarity=0.009  Sum_probs=142.7

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEE--EccCCCEEEEE---------------
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK--FSLDGQYLASG---------------  302 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~--fspdg~~LaSg---------------  302 (519)
                      ..+|+|+|+.|+.+..++.|++|++.......       .+..+...+....  ++|++++|+..               
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-------~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~  157 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV-------VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK  157 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEE-------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCccee-------eeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence            46899999999999999999999998654321       2334444454444  48999988743               


Q ss_pred             -------eCCCcEEEEecccCeeeceeeccCCCCceEEEee-cCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccc
Q 010037          303 -------GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI-NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (519)
Q Consensus       303 -------s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (519)
                             ..+..|.+||+.+++..... ..........+++ +....++... ...         ......+.+++..  
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~-~~~---------~~~~~~l~~~d~~--  224 (388)
T 3pe7_A          158 FHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHE-GPH---------DLVDARMWLINED--  224 (388)
T ss_dssp             HHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEEC-SCT---------TTSSCSEEEEETT--
T ss_pred             hhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEe-cCC---------CCCcceEEEEeCC--
Confidence                   24467999999888654332 2233334455555 3322212111 100         0012233333322  


Q ss_pred             cccccceeEeeccC--CCeeEEEEcCCC-eEEEEeC-C-C---cEEEEECCCCeEEEEecCCCc------EEEEEEeeCC
Q 010037          375 RLLEKPLHEFQGHS--SEVLDLSWSKNG-FLLSSSA-D-K---TVRLWQVGIDRCLRVFSHNNY------VTSVAFNPVD  440 (519)
Q Consensus       375 ~~~~~~~~~~~~h~--~~V~~l~~sp~~-~L~sgs~-D-g---~V~lWdl~~~~~~~~~~h~~~------V~~v~fsp~d  440 (519)
                         ......+..+.  ..+..++|+|+| .|+..+. + +   .|.+||+.+++..........      ...+.|+| +
T Consensus       225 ---~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-d  300 (388)
T 3pe7_A          225 ---GTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-D  300 (388)
T ss_dssp             ---SCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-E
T ss_pred             ---CCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-C
Confidence               12223333343  357788999999 5654432 2 2   399999999875443332221      11237999 7


Q ss_pred             CCEEEEE---------eCCCeEEEEEcCCCcEEeeccCCC-----------ceEEEEEeeCCCEEEEEe-cCCeEEEEEC
Q 010037          441 DNYFISG---------SIDGKVRIWEVRRCQVVDYTDIRE-----------IVSAVCYCPDGKGGIVGT-MTGNCRFYDI  499 (519)
Q Consensus       441 ~~~l~sg---------s~Dg~V~iwd~~~~~~~~~~~~~~-----------~V~~v~~spdg~~l~sgs-~dg~v~iwdl  499 (519)
                      ++.|+..         ..+..|++||+.+++...+..+..           .+..++|+|||+.|+..+ .+|...||.+
T Consensus       301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             ECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            8777653         456789999999988776666655           578899999999888766 4666666644

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.36  E-value=1e-10  Score=111.73  Aligned_cols=236  Identities=7%  Similarity=-0.063  Sum_probs=150.6

Q ss_pred             ccceeecCCCCeEE-eeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          238 HGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       238 ~~~~~~sp~g~~la-sgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      ...++++|+|.+++ +...++.|.+|+.........       ...+...+.+|+++++|+++++.. ++.|.+|+....
T Consensus        26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~   97 (270)
T 1rwi_B           26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN   97 (270)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS
T ss_pred             ccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc
Confidence            34578999999777 557789999998654332111       012335678899999999666665 889999998665


Q ss_pred             eeeceeeccC-CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          317 ERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       317 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      ... .+.... ..+..+.+.+.  ..++.....              ...+..++......    ......+...+.+|+
T Consensus        98 ~~~-~~~~~~~~~p~~i~~~~~--g~l~v~~~~--------------~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~  156 (270)
T 1rwi_B           98 NQT-VLPFDGLNYPEGLAVDTQ--GAVYVADRG--------------NNRVVKLAAGSKTQ----TVLPFTGLNDPDGVA  156 (270)
T ss_dssp             CCE-ECCCCSCSSEEEEEECTT--CCEEEEEGG--------------GTEEEEECTTCCSC----EECCCCSCCSCCCEE
T ss_pred             eEe-eeecCCcCCCcceEECCC--CCEEEEECC--------------CCEEEEEECCCcee----EeeccccCCCceeEE
Confidence            432 121111 22233333322  223322221              22333333222110    111112334678999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec-cCCCc
Q 010037          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIREI  472 (519)
Q Consensus       396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~  472 (519)
                      +++++ ++++...++.|.+||........... +...+.+|+++| ++.++++...++.|.+||.......... .+...
T Consensus       157 ~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~  235 (270)
T 1rwi_B          157 VDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT  235 (270)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSC
T ss_pred             EeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCC
Confidence            99988 56666667899999998776544332 336789999999 7888888778899999999776544332 23356


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +.+++++|+|+++++...++.|++|++...+
T Consensus       236 p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          236 PLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             ceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            8999999999988888889999999987544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.36  E-value=1.1e-11  Score=137.05  Aligned_cols=202  Identities=10%  Similarity=0.087  Sum_probs=136.1

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCc---e--EEEeecCCCCeEEeeccCCceeeeeeecc
Q 010037          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS---C--LYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (519)
                      ....+.|+|||++|+++  |+.|++||+.++++...+..+.....   .  ..++++....++....  .     .....
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~--~-----~~~r~   88 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY--V-----KQWRH   88 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE--E-----ECSSS
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECC--e-----eeEEE
Confidence            35578999999999886  99999999999987666655443211   1  3445544332222111  0     01112


Q ss_pred             CCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcE------
Q 010037          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV------  431 (519)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V------  431 (519)
                      +..+.+.+|+.....     ...+..|...+...+|||+| .|+.+ .++.|++|++.++...+...  +...+      
T Consensus        89 ~~~~~~~~~d~~~~~-----~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~  162 (740)
T 4a5s_A           89 SYTASYDIYDLNKRQ-----LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITD  162 (740)
T ss_dssp             CEEEEEEEEETTTTE-----ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCC
T ss_pred             ccceEEEEEECCCCc-----EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCccc
Confidence            223445566655432     33456677889999999999 77776 46899999999887655332  22222      


Q ss_pred             -----------EEEEEeeCCCCEEEEEeCCC------------------------------------eEEEEEcCC---C
Q 010037          432 -----------TSVAFNPVDDNYFISGSIDG------------------------------------KVRIWEVRR---C  461 (519)
Q Consensus       432 -----------~~v~fsp~d~~~l~sgs~Dg------------------------------------~V~iwd~~~---~  461 (519)
                                 ..+.|+| |+++|+.++.|.                                    +|++||+.+   +
T Consensus       163 ~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~  241 (740)
T 4a5s_A          163 WVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV  241 (740)
T ss_dssp             HHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred             ccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence                       3489999 999999876332                                    588899998   7


Q ss_pred             ---cEEeecc------CCCceEEEEEeeCCCEEEEEec----CCeEEEEECCCCe
Q 010037          462 ---QVVDYTD------IREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKGMQ  503 (519)
Q Consensus       462 ---~~~~~~~------~~~~V~~v~~spdg~~l~sgs~----dg~v~iwdl~~~~  503 (519)
                         +...+..      +...+..++|+|||+.++....    +..|++||+.+++
T Consensus       242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence               4544432      6778999999999997766543    2369999998876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.33  E-value=2.1e-10  Score=126.10  Aligned_cols=245  Identities=7%  Similarity=-0.053  Sum_probs=151.9

Q ss_pred             ccceeecCCCCeEEeeecCC-----eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc-----
Q 010037          238 HGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT-----  307 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg-----~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~-----  307 (519)
                      +...+|+|||++||.+..++     .|++|++..+.....      .+..  ..+..++|+|||+.|+.++.++.     
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------VLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------EEEE--ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------cccC--cccceEEEEeCCCEEEEEEECCcccccc
Confidence            34579999999999766543     899999986543211      1111  22667999999999999988776     


Q ss_pred             -----------EEEEecccCeeecee--eccCCC--CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCc
Q 010037          308 -----------VRVWKVIEHERLDGF--DVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (519)
Q Consensus       308 -----------I~iWd~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  372 (519)
                                 |++|++.+++....+  ......  .....++++....++.....           ......+.+++..
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-----------~~~~~~l~~~d~~  267 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG-----------CDPVNRLWYCDLQ  267 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS-----------SSSCCEEEEEEGG
T ss_pred             ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc-----------CCCccEEEEEECc
Confidence                       999999877632122  211111  22334444432222211100           0013344444432


Q ss_pred             ccc--c-cccceeEeeccCCCeeEEEEcCCC-eEEEEeCC----CcEEEEECCCCe---EEEEecCCC--cEEEEEEeeC
Q 010037          373 VFR--L-LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----KTVRLWQVGIDR---CLRVFSHNN--YVTSVAFNPV  439 (519)
Q Consensus       373 ~~~--~-~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D----g~V~lWdl~~~~---~~~~~~h~~--~V~~v~fsp~  439 (519)
                      ...  . .......+..+...+.. .|+|+| .|+..+..    ..|.+||+.++.   ....+.|..  .+..++|++ 
T Consensus       268 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-  345 (710)
T 2xdw_A          268 QESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-  345 (710)
T ss_dssp             GSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-
T ss_pred             ccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-
Confidence            200  0 00134555666666655 478887 66555543    369999998864   234445544  688899997 


Q ss_pred             CCCEEEEEeCCCe--EEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEec----CCeEEEEECCCCe
Q 010037          440 DDNYFISGSIDGK--VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKGMQ  503 (519)
Q Consensus       440 d~~~l~sgs~Dg~--V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~----dg~v~iwdl~~~~  503 (519)
                      ++.++++...|+.  |.+|++.+++.+ .+..+...+..++++|+++.|+....    .+.|++||+.+++
T Consensus       346 ~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          346 SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7788888888884  666787667654 44555677889999999987664432    4789999998876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.33  E-value=2.8e-10  Score=114.58  Aligned_cols=237  Identities=12%  Similarity=0.006  Sum_probs=137.3

Q ss_pred             cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEecccCeeeceeec
Q 010037          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVRVWKVIEHERLDGFDV  324 (519)
Q Consensus       255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs----------~Dg~I~iWd~~~~~~~~~~~~  324 (519)
                      .|+.|.+||....+..       ..+..+..+  .++|+|||++|+++.          .++.|.+||+.+.+.+..+..
T Consensus        29 ~d~~v~v~D~~t~~~~-------~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~   99 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFL-------GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL   99 (361)
T ss_dssp             GGCEEEEEETTTCCEE-------EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred             ccCeEEEEECCCCeEE-------EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence            4789999997654321       234555555  899999999999886          367899999999888877765


Q ss_pred             cC------CCCceEEEeecCCC----------CeEEeeccCCceeee-eee-----------------ccCCCeeEEEeC
Q 010037          325 QD------TDPSCLYFTINHLS----------QLIPIDVDKEKIDKT-KSL-----------------RKSSDLTCVVLP  370 (519)
Q Consensus       325 ~~------~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~~~-----------------~~s~~~~~~~~~  370 (519)
                      ..      ..+..+.+.++...          .+..++....+.... ...                 ..+.++.+..+.
T Consensus       100 ~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          100 PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTIN  179 (361)
T ss_dssp             CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred             CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence            32      23444555444321          222222222211111 000                 000111111111


Q ss_pred             Cccccccccce------eEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEec-------CC----Cc
Q 010037          371 PKVFRLLEKPL------HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFS-------HN----NY  430 (519)
Q Consensus       371 ~~~~~~~~~~~------~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~--~~~~~~-------h~----~~  430 (519)
                      ...   .++..      ..+..+..+ ..+.+++++ .++..+.++.|.++|+....  .+..+.       +.    ..
T Consensus       180 ~~~---~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g  255 (361)
T 2oiz_A          180 LGE---DGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG  255 (361)
T ss_dssp             ECT---TSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred             ECC---CCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence            000   00000      001111111 122334555 56666778889999987543  222221       00    11


Q ss_pred             EEEEEEeeCCCCEEEEEeC-----------CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          431 VTSVAFNPVDDNYFISGSI-----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~-----------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      ..-++|+| +++.++++..           .+.|.+||+.+++++....... +.+++|+|||++|++++. +.|.+||+
T Consensus       256 ~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          256 YNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             SSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             eeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            11278999 7666665532           3489999999999886444444 999999999999998887 99999999


Q ss_pred             CCC--eeeec
Q 010037          500 KGM--QIFDL  507 (519)
Q Consensus       500 ~~~--~l~~~  507 (519)
                      .++  +++..
T Consensus       333 ~t~~l~~~~~  342 (361)
T 2oiz_A          333 SQPEPKLLRT  342 (361)
T ss_dssp             SSSSCEEEEE
T ss_pred             CCCcceeeEE
Confidence            999  76543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.32  E-value=3.9e-10  Score=109.03  Aligned_cols=212  Identities=11%  Similarity=0.035  Sum_probs=143.2

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeec
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~  324 (519)
                      .++.|++++.++.|.+||...++.. .      .+..+. ..+.++.++|+|++|+  +.++.|..||. +++.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~-w------~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIV-W------EYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEE-E------EEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEE-E------EeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence            4578999999999999998655532 1      234444 4688999999999888  34778999999 8888877765


Q ss_pred             cCC-CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee------ccCCCeeEEEEc
Q 010037          325 QDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ------GHSSEVLDLSWS  397 (519)
Q Consensus       325 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~s  397 (519)
                      +.. ......+.+  ...++.....             ....+..++..     ++.+..+.      ++......++..
T Consensus        74 ~~~~~~~~~~~~~--dG~~lv~~~~-------------~~~~v~~vd~~-----Gk~l~~~~~~~~~~~~~~~~~~v~~~  133 (276)
T 3no2_A           74 PAGCEMQTARILP--DGNALVAWCG-------------HPSTILEVNMK-----GEVLSKTEFETGIERPHAQFRQINKN  133 (276)
T ss_dssp             CTTCEEEEEEECT--TSCEEEEEES-------------TTEEEEEECTT-----SCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred             CCCccccccEECC--CCCEEEEecC-------------CCCEEEEEeCC-----CCEEEEEeccCCCCcccccccCceEC
Confidence            421 111222222  1222221111             02222222221     11122211      222345567788


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccC------
Q 010037          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI------  469 (519)
Q Consensus       398 p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~------  469 (519)
                      ++| +|++...++.|..||.. ++.+..+.....+.++.+.| ++++++++..++.|..+|..+++++. +...      
T Consensus       134 ~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~  211 (276)
T 3no2_A          134 KKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ  211 (276)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred             CCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence            888 88899999999999998 99998888666677888888 89999999988999999999998873 3221      


Q ss_pred             CCceEEEEEeeCCCEEEEEe
Q 010037          470 REIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs  489 (519)
                      -..+..++..++|+.+++..
T Consensus       212 l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          212 LFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CSEEEEEEECTTSCEEEEEE
T ss_pred             ccccccceEcCCCCEEEEec
Confidence            12378899999999887764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.30  E-value=3.7e-11  Score=121.30  Aligned_cols=239  Identities=6%  Similarity=-0.033  Sum_probs=139.7

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEE-------------------EEEccCCCEEEE
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-------------------MKFSLDGQYLAS  301 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-------------------l~fspdg~~LaS  301 (519)
                      ..|+|+|++|+.++.++.|++|++.......       .+..+......                   +.|+|++++++.
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~  158 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQV-------IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKF  158 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEE-------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEE-------EEecccccCCCCCEEEeccCCccccccccccccCCCCcceee
Confidence            6799999999999999999999987544211       11222221111                   356777776665


Q ss_pred             E-----eCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc
Q 010037          302 G-----GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (519)
Q Consensus       302 g-----s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (519)
                      +     ..+..|.+||+.+++..... ........+.|.+.....++.......         ......+.+++...   
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~---------~~~~~~l~~~d~~~---  225 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPH---------DLVDARMWLVNEDG---  225 (396)
T ss_dssp             HHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCS---------SSCSCCCEEEETTS---
T ss_pred             eeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCC---------CCCCceEEEEECCC---
Confidence            4     35678999999887654333 222233344444411111111110000         00002233333211   


Q ss_pred             cccceeEeecc--CCCeeEEEEcCCC-eEEEEeCC-----CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe
Q 010037          377 LEKPLHEFQGH--SSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS  448 (519)
Q Consensus       377 ~~~~~~~~~~h--~~~V~~l~~sp~~-~L~sgs~D-----g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs  448 (519)
                        .....+..+  ...+..++|+|+| +|+.++.+     +.|++||+.+++......... .. +.|+|.+++++++++
T Consensus       226 --~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          226 --SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             --CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEE
T ss_pred             --CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEec
Confidence              112222222  2357889999999 66666543     449999999887655443333 33 889984566777654


Q ss_pred             ----------------CCCeEEEEEcCCCcEEeeccCCC-----------ceEEEEEeeCCCEEEEEec-CCeEEE--EE
Q 010037          449 ----------------IDGKVRIWEVRRCQVVDYTDIRE-----------IVSAVCYCPDGKGGIVGTM-TGNCRF--YD  498 (519)
Q Consensus       449 ----------------~Dg~V~iwd~~~~~~~~~~~~~~-----------~V~~v~~spdg~~l~sgs~-dg~v~i--wd  498 (519)
                                      .+..|++||+.+++...+..+..           .+..++|+|||+.|+.++. ++...|  ++
T Consensus       302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          302 CDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                            34789999999887655554443           2567899999998887765 454444  45


Q ss_pred             CCCCe
Q 010037          499 IKGMQ  503 (519)
Q Consensus       499 l~~~~  503 (519)
                      +.+++
T Consensus       382 ~~~~~  386 (396)
T 3c5m_A          382 VPESY  386 (396)
T ss_dssp             CCTTC
T ss_pred             Ecccc
Confidence            54443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.27  E-value=2e-10  Score=125.89  Aligned_cols=196  Identities=11%  Similarity=0.027  Sum_probs=132.6

Q ss_pred             cccceeecCCCCeEE-----eeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc----
Q 010037          237 RHGSATLKPGDHELT-----LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----  307 (519)
Q Consensus       237 ~~~~~~~sp~g~~la-----sgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~----  307 (519)
                      .+...+|+|||++||     .|+.+.+|++|++..+......     .+....  ...++|+|||+.|+.++.|..    
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-----~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-----VIEGGK--YATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-----CBSCCT--TCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-----ccCccc--ccceEEecCCCEEEEEEecCCCCCc
Confidence            345579999999999     5666679999999865532000     111111  157899999999999988776    


Q ss_pred             ---------EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037          308 ---------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (519)
Q Consensus       308 ---------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (519)
                               |++|++.++.....                                                         
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~---------------------------------------------------------  217 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDT---------------------------------------------------------  217 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCE---------------------------------------------------------
T ss_pred             cccCCCCCEEEEEECCCCchhce---------------------------------------------------------
Confidence                     88888766542100                                                         


Q ss_pred             cceeEeeccCCCeeEEEEcCCC-eEEEEeCCC----cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe---CC
Q 010037          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK----TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS---ID  450 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg----~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs---~D  450 (519)
                       .+.....|...+..+.|+|+| +|+.++.++    .|.+|+..++.......+...+....+ | ++.+++...   .+
T Consensus       218 -lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~  294 (695)
T 2bkl_A          218 -VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPR  294 (695)
T ss_dssp             -EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-E-TTEEEEEECTTCTT
T ss_pred             -EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-c-CCcEEEEECCCCCC
Confidence             011123355678899999999 777766555    677887766665555556666667767 5 455555544   25


Q ss_pred             CeEEEEEcCCCcE---EeeccC--CCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          451 GKVRIWEVRRCQV---VDYTDI--REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       451 g~V~iwd~~~~~~---~~~~~~--~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +.|.+||+.++..   ..+..+  ...+..++|+ ++.++++...|+..+||.+.
T Consensus       295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            8999999987652   333333  4567888888 77788888899987777543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.26  E-value=1.9e-09  Score=106.78  Aligned_cols=234  Identities=9%  Similarity=0.000  Sum_probs=151.6

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~  320 (519)
                      +++. ++.+.++...++.|.+||....+..       ..+. .......++++++++.+++...++.|.+||..+++...
T Consensus        49 i~~~-~~~lyv~~~~~~~v~viD~~t~~~~-------~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           49 MVIR-DGIGWIVVNNSHVIFAIDINTFKEV-------GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             EEEE-TTEEEEEEGGGTEEEEEETTTCCEE-------EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             EEEE-CCEEEEEEcCCCEEEEEECcccEEE-------EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence            4443 4455566667899999998754421       1232 34568899999998555554489999999999998777


Q ss_pred             eeeccCC-----CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          321 GFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       321 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      .+.....     .+..+.+   ....++....             ..+..+.+++......    +..+.. ......++
T Consensus       120 ~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~-------------~~~~~v~viD~~t~~~----~~~i~~-g~~p~~i~  178 (328)
T 3dsm_A          120 YIECPDMDMESGSTEQMVQ---YGKYVYVNCW-------------SYQNRILKIDTETDKV----VDELTI-GIQPTSLV  178 (328)
T ss_dssp             EEECTTCCTTTCBCCCEEE---ETTEEEEEEC-------------TTCCEEEEEETTTTEE----EEEEEC-SSCBCCCE
T ss_pred             EEEcCCccccCCCcceEEE---ECCEEEEEcC-------------CCCCEEEEEECCCCeE----EEEEEc-CCCccceE
Confidence            6665441     2223333   1122222211             1234555555544322    222322 23457889


Q ss_pred             EcCCC-eEEEEeCC----------CcEEEEECCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          396 WSKNG-FLLSSSAD----------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       396 ~sp~~-~L~sgs~D----------g~V~lWdl~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      ++|+| +++++..+          +.|.++|..+++....+..  ......++|+| ++++|+++..  .|.+||+.+++
T Consensus       179 ~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          179 MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADR  255 (328)
T ss_dssp             ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSS
T ss_pred             EcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCc
Confidence            99999 44444443          7899999999998877753  34789999999 8888877654  89999999887


Q ss_pred             EEe--eccC-CCceEEEEEee-CCCEEEEE----ecCCeEEEEECCCCeeeec
Q 010037          463 VVD--YTDI-REIVSAVCYCP-DGKGGIVG----TMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       463 ~~~--~~~~-~~~V~~v~~sp-dg~~l~sg----s~dg~v~iwdl~~~~l~~~  507 (519)
                      +..  +... ......++++| ++.++++.    ..++.|.+||.....+..+
T Consensus       256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i  308 (328)
T 3dsm_A          256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEF  308 (328)
T ss_dssp             CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEE
T ss_pred             eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEE
Confidence            652  2222 46789999999 45555555    5688999999984334433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.26  E-value=2.8e-10  Score=112.95  Aligned_cols=181  Identities=13%  Similarity=0.142  Sum_probs=118.0

Q ss_pred             eeecCCCCeEEee---------ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC---Cc-
Q 010037          241 ATLKPGDHELTLG---------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GT-  307 (519)
Q Consensus       241 ~~~sp~g~~lasg---------s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~-  307 (519)
                      .++  +|++++..         ..++.|.+|++......        .+    ..+..++|+|||++||.++.+   +. 
T Consensus        20 ~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--------~l----~~~~~~~~SpDg~~la~~~~~~~~~~~   85 (347)
T 2gop_A           20 PRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR--------FI----ENATMPRISPDGKKIAFMRANEEKKVS   85 (347)
T ss_dssp             EEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE--------EE----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred             ceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE--------Ec----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence            445  77777653         23678999998754321        12    467889999999999988754   33 


Q ss_pred             -EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec
Q 010037          308 -VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (519)
Q Consensus       308 -I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (519)
                       |.+|++.+++...                                                               +..
T Consensus        86 ~l~~~~~~~g~~~~---------------------------------------------------------------l~~  102 (347)
T 2gop_A           86 EIWVADLETLSSKK---------------------------------------------------------------ILE  102 (347)
T ss_dssp             EEEEEETTTTEEEE---------------------------------------------------------------EEE
T ss_pred             eEEEEECCCCceEE---------------------------------------------------------------EEc
Confidence             6667776554211                                                               111


Q ss_pred             cCCCeeEEEEcCCC-eEEEEeC---------------------------CCcEEEEECCCCeEEEEecCCCcEEEEEEee
Q 010037          387 HSSEVLDLSWSKNG-FLLSSSA---------------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP  438 (519)
Q Consensus       387 h~~~V~~l~~sp~~-~L~sgs~---------------------------Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp  438 (519)
                      +.. +..++|+|+| .|+.++.                           ...|.+||+.+++.+..+... .+..++|+|
T Consensus       103 ~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~sp  180 (347)
T 2gop_A          103 AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHR  180 (347)
T ss_dssp             ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEET
T ss_pred             CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCC
Confidence            122 7788888888 6666553                           257999999998874444333 788999999


Q ss_pred             CCCCEEEEEeCCC-------eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC--------CeEEEEECCCCe
Q 010037          439 VDDNYFISGSIDG-------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT--------GNCRFYDIKGMQ  503 (519)
Q Consensus       439 ~d~~~l~sgs~Dg-------~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d--------g~v~iwdl~~~~  503 (519)
                       ++ +++++..++       ...||.+.+++...+..+ ..+..+  +|||+.|+.++.+        ..|.+||  +++
T Consensus       181 -dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~  253 (347)
T 2gop_A          181 -DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE  253 (347)
T ss_dssp             -TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC
T ss_pred             -Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc
Confidence             88 777776542       334444446655554444 455544  9999999887754        3688888  555


Q ss_pred             eeec
Q 010037          504 IFDL  507 (519)
Q Consensus       504 l~~~  507 (519)
                      ...+
T Consensus       254 ~~~l  257 (347)
T 2gop_A          254 VMGI  257 (347)
T ss_dssp             EEES
T ss_pred             eEec
Confidence            4444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.26  E-value=1.4e-09  Score=104.90  Aligned_cols=204  Identities=11%  Similarity=0.121  Sum_probs=134.5

Q ss_pred             cCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccC------CCCceEEEeecCCCCeEEeeccCCceeee
Q 010037          282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD------TDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (519)
Q Consensus       282 ~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (519)
                      +|-..+.+|+++++|+++++...++.|.+||.. ++....+....      ..+..+.+. .....++....        
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~-~~~g~l~v~~~--------   96 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV-RNSGDIIVTER--------   96 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE-TTTTEEEEEEC--------
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE-cCCCeEEEEcC--------
Confidence            455678999999999988888889999999986 44444432211      112222221 11112222111        


Q ss_pred             eeeccCCCeeEEEeCCccccccccceeEee-ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCc
Q 010037          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNY  430 (519)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~  430 (519)
                           ..+..+..++..     ++.+..+. .+...+.+++++|++ ++++...++.|.+||.. ++.+..+.   +...
T Consensus        97 -----~~~~~i~~~d~~-----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~  165 (286)
T 1q7f_A           97 -----SPTHQIQIYNQY-----GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEF  165 (286)
T ss_dssp             -----GGGCEEEEECTT-----SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSS
T ss_pred             -----CCCCEEEEECCC-----CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCC
Confidence                 113344445422     12233332 244678999999999 66666778999999965 55566663   4457


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccC--CCceEEEEEeeCCCEEEEEecCC-eEEEEECCCCeeeec
Q 010037          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--REIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKGMQIFDL  507 (519)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--~~~V~~v~~spdg~~l~sgs~dg-~v~iwdl~~~~l~~~  507 (519)
                      +..|+++| +++++++...++.|++||.....+..+...  ...+..++++|+|+++++...++ .|.+||..+..+..+
T Consensus       166 p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~  244 (286)
T 1q7f_A          166 PNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL  244 (286)
T ss_dssp             EEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred             cEEEEECC-CCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEE
Confidence            89999999 888888888899999999865433344332  35789999999999888887776 999999765544333

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.24  E-value=7e-10  Score=109.91  Aligned_cols=203  Identities=16%  Similarity=0.197  Sum_probs=134.7

Q ss_pred             CCCEEEEEEccCCCEEEEEeCC------------------------CcEEEEecccCeeeceeeccC-CCCceEEEeecC
Q 010037          284 EGSILTMKFSLDGQYLASGGED------------------------GTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINH  338 (519)
Q Consensus       284 ~~~I~~l~fspdg~~LaSgs~D------------------------g~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~  338 (519)
                      -+.|.+|+++|+|+++++...+                        +.|.+||..+++....+.... ..+..+++.+..
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999888777                        479999998887655443211 223334443222


Q ss_pred             CCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe---------eccCCCeeEEEEcC-CC-eEEEEe-
Q 010037          339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF---------QGHSSEVLDLSWSK-NG-FLLSSS-  406 (519)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~V~~l~~sp-~~-~L~sgs-  406 (519)
                        .++....              ....+..++.....   ..+..+         .++......|+++| ++ ++++.+ 
T Consensus       103 --~l~v~d~--------------~~~~v~~~~~~g~~---~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~  163 (329)
T 3fvz_A          103 --NYWVTDV--------------ALHQVFKLDPHSKE---GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY  163 (329)
T ss_dssp             --CEEEEET--------------TTTEEEEECTTCSS---CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred             --CEEEEEC--------------CCCEEEEEeCCCCe---EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence              2333222              23344444432110   012222         23455789999999 67 566665 


Q ss_pred             CCCcEEEEECCCCeEEEEecC-----------CCcEEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCCcEEee---ccCCC
Q 010037          407 ADKTVRLWQVGIDRCLRVFSH-----------NNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQVVDY---TDIRE  471 (519)
Q Consensus       407 ~Dg~V~lWdl~~~~~~~~~~h-----------~~~V~~v~fsp~d-~~~l~sgs~Dg~V~iwd~~~~~~~~~---~~~~~  471 (519)
                      .++.|++|+ ..++.+..+..           -.....|+++| + ++++++...++.|++||..+++.+..   ..+..
T Consensus       164 ~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~  241 (329)
T 3fvz_A          164 CNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR  241 (329)
T ss_dssp             SCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT
T ss_pred             CCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC
Confidence            689999999 56777777641           12489999999 6 78888888899999999998877743   34556


Q ss_pred             ceEEEEEee------CCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          472 IVSAVCYCP------DGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       472 ~V~~v~~sp------dg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      .+.+++|+|      +|+.+++...+..|++|++.++++...
T Consensus       242 ~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          242 NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred             CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence            788999999      333333333455899999988877654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.23  E-value=8.2e-09  Score=104.22  Aligned_cols=243  Identities=9%  Similarity=-0.069  Sum_probs=145.4

Q ss_pred             ceeecCCCCeEEeee----------cCCeEEEeeCCcccccccccccc--ceeecCCCCEEEEEEccCCCEEEEEeC--C
Q 010037          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D  305 (519)
Q Consensus       240 ~~~~sp~g~~lasgs----------~dg~I~vw~~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~LaSgs~--D  305 (519)
                      .++++|||++++++.          .++.|.++|....... ..+...  ..+. +......+.|+|||++|+.+..  +
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~-~~i~~~~~~~~~-~g~~p~~~~~spDG~~l~v~n~~~~  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI-ADIELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE-EEEECCCccccc-cCCCccceEECCCCCEEEEEecCCC
Confidence            579999999998875          3678999998643321 111100  0000 0123457899999999998874  4


Q ss_pred             CcEEEEecccCeeece-eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce--e
Q 010037          306 GTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL--H  382 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~  382 (519)
                      +.|.++| .+++.... +....    ++.+.+.........               +.++.+..++. .........  .
T Consensus       148 ~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~---------------~~dg~~~~vd~-~g~~~~~~~~~~  206 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLL---------------CAQGGLAKTDH-AGGAAGAGLVGA  206 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEE---------------cCCCCEEEEEC-CCcEEEEEeccc
Confidence            7899999 99887666 54322    233333222211111               11222222222 111100000  0


Q ss_pred             EeeccCCC-eeEEEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEec-----------CCCcEEEEEEeeCCCCEEEEE
Q 010037          383 EFQGHSSE-VLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFS-----------HNNYVTSVAFNPVDDNYFISG  447 (519)
Q Consensus       383 ~~~~h~~~-V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~--~~~~~~-----------h~~~V~~v~fsp~d~~~l~sg  447 (519)
                      .+ ....+ .....+.+++ .++..+..+.|.+.|+.+..  .+..+.           .......+.++| +++.+++.
T Consensus       207 ~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~  284 (373)
T 2mad_H          207 ML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLL  284 (373)
T ss_pred             cc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEE
Confidence            00 11111 1234455655 44444467899999987653  233332           123345578899 77766665


Q ss_pred             eC----------CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC-EEEEEe-cCCeEEEEECCCCeeeec
Q 010037          448 SI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       448 s~----------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~sgs-~dg~v~iwdl~~~~l~~~  507 (519)
                      ..          .+.|.++|+.+.+++...........++|+|||+ +++++. .++.|.+||+.++++...
T Consensus       285 ~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          285 TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             eccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            43          3589999999999987666666789999999999 777776 489999999999987644

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.22  E-value=1.7e-09  Score=118.86  Aligned_cols=219  Identities=11%  Similarity=0.034  Sum_probs=131.3

Q ss_pred             cCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeee
Q 010037          282 AHEGSILTMKFSLDGQYLASGGEDG-----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (519)
Q Consensus       282 ~H~~~I~~l~fspdg~~LaSgs~Dg-----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (519)
                      +|...+..++|||||++||.+..++     .|++||+.+++...... .......+.|++++...++.............
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3555788999999999998776543     89999999988765321 12224456676665443333221110000000


Q ss_pred             eeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeC-----CCcEEEEECCC------C--eEE
Q 010037          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGI------D--RCL  422 (519)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~-----Dg~V~lWdl~~------~--~~~  422 (519)
                      .........+.+++..........+.....|...+..+.|+|+| +|+.++.     +..|++||+.+      +  ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence            00001122344444433221111222222355668899999999 6666554     57899999986      4  333


Q ss_pred             EEecCCCcEEEEEEeeCCCCEEEEEeCC----CeEEEEEcCCCc---EEeeccCCC--ceEEEEEeeCCCEEEEEecCCe
Q 010037          423 RVFSHNNYVTSVAFNPVDDNYFISGSID----GKVRIWEVRRCQ---VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGN  493 (519)
Q Consensus       423 ~~~~h~~~V~~v~fsp~d~~~l~sgs~D----g~V~iwd~~~~~---~~~~~~~~~--~V~~v~~spdg~~l~sgs~dg~  493 (519)
                      ....+...+.. .|+| ++..|+..+..    +.|.+||+.++.   ...+..+..  .+..++|++++.++++...++.
T Consensus       281 ~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~  358 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (710)
T ss_dssp             EEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             EeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence            33445555554 4888 77766665543    369999998764   233444433  6888999988888888888885


Q ss_pred             --EEEEECCCCe
Q 010037          494 --CRFYDIKGMQ  503 (519)
Q Consensus       494 --v~iwdl~~~~  503 (519)
                        |++|++.+++
T Consensus       359 ~~l~~~~~~~g~  370 (710)
T 2xdw_A          359 NTLQLHDLATGA  370 (710)
T ss_dssp             EEEEEEETTTCC
T ss_pred             EEEEEEECCCCC
Confidence              6677875554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.20  E-value=2e-10  Score=125.89  Aligned_cols=194  Identities=11%  Similarity=0.001  Sum_probs=128.9

Q ss_pred             ecCCCCeEEeeecCC---eEEEe--eCCccccccccccccc-eeecCCCCEEEEEEccCCCEEE-----EEeCCCcEEEE
Q 010037          243 LKPGDHELTLGQRMR---RVRVH--PVKKQSRELSSLYTGQ-EFLAHEGSILTMKFSLDGQYLA-----SGGEDGTVRVW  311 (519)
Q Consensus       243 ~sp~g~~lasgs~dg---~I~vw--~~~~~~~~~~~~~~~~-~l~~H~~~I~~l~fspdg~~La-----Sgs~Dg~I~iW  311 (519)
                      ..|+|.+++....++   .-.||  +.......  .+.... .-.+|...+..++|||||++||     .|+.+..|++|
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~  152 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEK--VLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI  152 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCE--EEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcE--EEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence            447888887765543   33444  33222111  111000 1134666799999999999998     44556789999


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      |+.+++....-                                                            .+.  ....
T Consensus       153 dl~tg~~~~~~------------------------------------------------------------~~~--~~~~  170 (695)
T 2bkl_A          153 DVDSGEWSKVD------------------------------------------------------------VIE--GGKY  170 (695)
T ss_dssp             ETTTCCBCSSC------------------------------------------------------------CBS--CCTT
T ss_pred             ECCCCCCcCCc------------------------------------------------------------ccC--cccc
Confidence            99887632000                                                            000  0112


Q ss_pred             eEEEEcCCC-eEEEEeCCCc-------------EEEEECCCCeE--EEEec---CCCcEEEEEEeeCCCCEEEEEeCCC-
Q 010037          392 LDLSWSKNG-FLLSSSADKT-------------VRLWQVGIDRC--LRVFS---HNNYVTSVAFNPVDDNYFISGSIDG-  451 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs~Dg~-------------V~lWdl~~~~~--~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg-  451 (519)
                      ..++|+|+| .|+.++.|..             |++|++.++..  ...+.   +...+..+.|+| ++++|+.++.++ 
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~  249 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGW  249 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCC
Confidence            578999999 8888888776             99999998762  23332   556899999999 899888877666 


Q ss_pred             ---eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEec----CCeEEEEECCCCe
Q 010037          452 ---KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKGMQ  503 (519)
Q Consensus       452 ---~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~----dg~v~iwdl~~~~  503 (519)
                         .|++|+..+++...+..+...+....+ ++|. |+..+.    ++.|.+||+.+++
T Consensus       250 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          250 SENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             TEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred             CceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence               788887776666666666666666666 7777 555443    5789999997764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.20  E-value=1.1e-08  Score=99.71  Aligned_cols=251  Identities=8%  Similarity=-0.001  Sum_probs=150.1

Q ss_pred             ccceeecCCCCeEEe-------eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCcEE
Q 010037          238 HGSATLKPGDHELTL-------GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVR  309 (519)
Q Consensus       238 ~~~~~~sp~g~~las-------gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~  309 (519)
                      ..+++|++++.++++       +..++.|.+|+........  +.. ....++...+.+++++++ |+++++.. .+.|.
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~--~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV--ICK-PEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL   95 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE--EEC-CEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred             ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE--EEe-cccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence            345789999988888       7888999999976544221  100 011235567999999999 76555444 44788


Q ss_pred             EEecccCeeece-eeccC----CCCceEEEeecCCCCeEEeeccCCce-eeeeeeccCCCeeEEEeCCccccccccceeE
Q 010037          310 VWKVIEHERLDG-FDVQD----TDPSCLYFTINHLSQLIPIDVDKEKI-DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (519)
Q Consensus       310 iWd~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (519)
                      +||.. ++.... .....    ..+..+.+.+.  ..++......... .............+..++.. ..     +..
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-----~~~  166 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-----MIQ  166 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-----EEE
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-CC-----EEE
Confidence            99987 654322 11111    12333433332  2232222111000 00000000112344444432 11     122


Q ss_pred             eeccCCCeeEEEEc----CCC-eEEEE-eCCCcEEEEECC-CCeE-----EEEec-CC-CcEEEEEEeeCCCCEEEEEeC
Q 010037          384 FQGHSSEVLDLSWS----KNG-FLLSS-SADKTVRLWQVG-IDRC-----LRVFS-HN-NYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       384 ~~~h~~~V~~l~~s----p~~-~L~sg-s~Dg~V~lWdl~-~~~~-----~~~~~-h~-~~V~~v~fsp~d~~~l~sgs~  449 (519)
                      +..+......++|+    |++ .|+.+ ..++.|.+||+. .++.     ...+. +. ..+..+++++ +++++++...
T Consensus       167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~  245 (314)
T 1pjx_A          167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWG  245 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEET
T ss_pred             eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcC
Confidence            22334456889999    998 55544 567899999986 4442     22222 22 6688999999 8998888888


Q ss_pred             CCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECCCC
Q 010037          450 DGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKGM  502 (519)
Q Consensus       450 Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~~~  502 (519)
                      ++.|.+||..+++.+. ...+...+.+++|+|+|+.|+++ ..++.|..|++...
T Consensus       246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            8999999998666543 44445789999999999955554 45688999998753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.20  E-value=2.9e-08  Score=95.62  Aligned_cols=237  Identities=6%  Similarity=0.004  Sum_probs=151.1

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      .+.++++.|+|.+.++...++.|.+|+.. ....  ..    .+..+...+.+|++.++|.++++...++.|..|+.. +
T Consensus        16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~--~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           16 GPYGITVSDKGKVWITQHKANMISCINLD-GKIT--EY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE--EE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CccceEECCCCCEEEEecCCCcEEEEcCC-CCeE--Ee----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            44568899999988777668999999976 3211  11    111245679999999999988887778889999975 3


Q ss_pred             eeeceeecc--CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037          317 ERLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       317 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (519)
                      + ...+...  ...+..+.+.  ....++....              ....+..++.. ....   ......+...+..+
T Consensus        88 ~-~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~--------------~~~~i~~~d~~-g~~~---~~~~~~~~~~~~~i  146 (299)
T 2z2n_A           88 I-IKEYTLPNPDSAPYGITEG--PNGDIWFTEM--------------NGNRIGRITDD-GKIR---EYELPNKGSYPSFI  146 (299)
T ss_dssp             C-EEEEECSSTTCCEEEEEEC--TTSCEEEEET--------------TTTEEEEECTT-CCEE---EEECSSTTCCEEEE
T ss_pred             c-EEEEeCCCcCCCceeeEEC--CCCCEEEEec--------------CCceEEEECCC-CCEE---EecCCCCCCCCceE
Confidence            2 2222221  1122222222  1222222211              12233334331 1000   01112244578999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee--ccC
Q 010037          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDI  469 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~--~~~  469 (519)
                      ++.+++ .+++...++.|..||. +++.... .. ....+.+++++| +++++++...++.|.+||. +++...+  ...
T Consensus       147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~  223 (299)
T 2z2n_A          147 TLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTP  223 (299)
T ss_dssp             EECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             EEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCC
Confidence            999999 5555556789999999 6665543 22 455688999999 7887777767889999999 6665543  234


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ...+.+++++++|+++++...++.|.+||. ++++..
T Consensus       224 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~  259 (299)
T 2z2n_A          224 NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEE  259 (299)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEE
T ss_pred             CCCceeEEECCCCCEEEeccCCceEEEECC-CCceEE
Confidence            467899999999996666557789999998 455443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.17  E-value=5.6e-09  Score=111.12  Aligned_cols=193  Identities=10%  Similarity=0.035  Sum_probs=139.9

Q ss_pred             ecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc--cCeeec
Q 010037          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLD  320 (519)
Q Consensus       243 ~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~--~~~~~~  320 (519)
                      .+|.+.++++...++.|.++|.......       ..+.. ...+..+.|+|||++|++++.|+.|.+||+.  +++.+.
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~-------~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~  234 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIK-------TVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA  234 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEE-------EEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEE-------EEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence            4455667777888999999998754321       12222 2356789999999999999999999999985  444322


Q ss_pred             eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc---
Q 010037          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS---  397 (519)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---  397 (519)
                      .+                                                              .. ......++|+   
T Consensus       235 ~i--------------------------------------------------------------~~-G~~P~~ia~s~~~  251 (567)
T 1qks_A          235 EI--------------------------------------------------------------KI-GSEARSIETSKME  251 (567)
T ss_dssp             EE--------------------------------------------------------------EC-CSEEEEEEECCST
T ss_pred             EE--------------------------------------------------------------ec-CCCCceeEEcccc
Confidence            11                                                              11 1234688999   


Q ss_pred             -CCC-eEEEE-eCCCcEEEEECCCCeEEEEecC------------CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          398 -KNG-FLLSS-SADKTVRLWQVGIDRCLRVFSH------------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       398 -p~~-~L~sg-s~Dg~V~lWdl~~~~~~~~~~h------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                       |+| +++++ ..+++|.|+|..+.++++.+.-            ...+..+..++....+++....+|+|.++|..+.+
T Consensus       252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~  331 (567)
T 1qks_A          252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN  331 (567)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred             CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence             688 55554 4669999999999999887752            12678899998445555666677999999998764


Q ss_pred             EE--eeccCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCCeeee
Q 010037          463 VV--DYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       463 ~~--~~~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~~l~~  506 (519)
                      .+  ...........+.|+|+|++++++. .++.|.++|+.++++..
T Consensus       332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~  378 (567)
T 1qks_A          332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  378 (567)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence            33  2333445677899999999987766 57889999999998754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.17  E-value=3.9e-09  Score=102.54  Aligned_cols=204  Identities=10%  Similarity=0.008  Sum_probs=128.9

Q ss_pred             ceeecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeee
Q 010037          278 QEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (519)
                      ..+..+.....+++|+|+|+ +++++..++.|..|+..++  ...+..+...+..+.+.+..  .++...          
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg--~l~v~~----------   86 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG--HLIACS----------   86 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC--CEEEEE----------
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC--cEEEEe----------
Confidence            34555667788999999998 7888888999999999876  44444443334444443322  222222          


Q ss_pred             eeccCCCeeEEEeCCccccccccceeEeec-cCCCeeEEEEcCCC-eEEE----Ee-------------CCCcEEEEECC
Q 010037          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNG-FLLS----SS-------------ADKTVRLWQVG  417 (519)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~-~L~s----gs-------------~Dg~V~lWdl~  417 (519)
                          .....+..++........ ......+ ....+.+++++|+| ++++    |+             ..+.|..++..
T Consensus        87 ----~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~  161 (296)
T 3e5z_A           87 ----HGLRRLERQREPGGEWES-IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD  161 (296)
T ss_dssp             ----TTTTEEEEECSTTCCEEE-EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred             ----cCCCeEEEEcCCCCcEEE-EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence                122334444442211100 0000111 12356789999999 5555    32             12455566655


Q ss_pred             CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC-CCcE---E-eeccCCCceEEEEEeeCCCEEEEEecCC
Q 010037          418 IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQV---V-DYTDIREIVSAVCYCPDGKGGIVGTMTG  492 (519)
Q Consensus       418 ~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~-~~~~---~-~~~~~~~~V~~v~~spdg~~l~sgs~dg  492 (519)
                       ++......+....+.++|+| +++++++.+.++.|.+|++. ++++   . .+..+...+..++++++|+++++.  ++
T Consensus       162 -g~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~  237 (296)
T 3e5z_A          162 -GTLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD  237 (296)
T ss_dssp             -SCEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT
T ss_pred             -CCEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC
Confidence             55555555777789999999 88888777888999999997 5554   1 122344556789999999866555  88


Q ss_pred             eEEEEECCCCee
Q 010037          493 NCRFYDIKGMQI  504 (519)
Q Consensus       493 ~v~iwdl~~~~l  504 (519)
                      .|.+||..+..+
T Consensus       238 ~v~~~~~~g~~~  249 (296)
T 3e5z_A          238 GVHVLTPDGDEL  249 (296)
T ss_dssp             EEEEECTTSCEE
T ss_pred             eEEEECCCCCEE
Confidence            999999975443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.13  E-value=4.3e-10  Score=113.41  Aligned_cols=154  Identities=10%  Similarity=0.015  Sum_probs=114.0

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCee
Q 010037          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (519)
                      +++.+++++...+|++|+.++ +++|++........  .....                                     
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~~-------------------------------------   78 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDSTP-------------------------------------   78 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSCC-------------------------------------
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--ccccc-------------------------------------
Confidence            688999999999999999985 66699765431100  00000                                     


Q ss_pred             EEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCE
Q 010037          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY  443 (519)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~  443 (519)
                                  ..+... ..+.. |+.|+|  ++ .|+++ .++.|++||+.+....... .|...+.++.+.+ .  .
T Consensus        79 ------------~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~  138 (388)
T 1xip_A           79 ------------LTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--T  138 (388)
T ss_dssp             ------------CCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--E
T ss_pred             ------------ccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--C
Confidence                        001111 22455 999999  66 88877 8899999999876544444 3777788887766 2  3


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          444 FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      +++++.||.|.+||+.+++...   +...|++++|+|+|  +++|..||++++|+..++++
T Consensus       139 ~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          139 LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred             EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence            8888999999999999887654   45689999999999  68899999999999888774

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.11  E-value=1.5e-08  Score=107.84  Aligned_cols=256  Identities=12%  Similarity=0.095  Sum_probs=157.4

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCC--ccccccccccccceeecCCCCEEEEEEc----cCCCEEEEEeC-CCcEEEEe
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVK--KQSRELSSLYTGQEFLAHEGSILTMKFS----LDGQYLASGGE-DGTVRVWK  312 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~--~~~~~~~~~~~~~~l~~H~~~I~~l~fs----pdg~~LaSgs~-Dg~I~iWd  312 (519)
                      .++|+|+|+++++++.++.|.+||+.  .... .      ..+.... ....++|+    |||++++++.. +++|.|+|
T Consensus       201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v------~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD  272 (567)
T 1qks_A          201 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-V------AEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMD  272 (567)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCCE-E------EEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred             ceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-e------EEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence            57999999999999999999999985  2221 1      2333322 35789999    69998887765 58999999


Q ss_pred             cccCeeeceeeccCC-----------CCceEEEee---------cCCCCeEEeeccCCce--------------------
Q 010037          313 VIEHERLDGFDVQDT-----------DPSCLYFTI---------NHLSQLIPIDVDKEKI--------------------  352 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~-----------~~~~~~~~~---------~~~~~~~~~~~~~~~~--------------------  352 (519)
                      ..+.+.+..+.....           .+..+..+.         .....+..++......                    
T Consensus       273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd  352 (567)
T 1qks_A          273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGS  352 (567)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTT
T ss_pred             CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCC
Confidence            999888777654321           111222221         1122222222211100                    


Q ss_pred             eeeeeeccCCCeeEEEeCCccccccccceeEee-----ccCCCeeEEEEcCCC--eEEEEe-CCCcEEEEECCC------
Q 010037          353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-----GHSSEVLDLSWSKNG--FLLSSS-ADKTVRLWQVGI------  418 (519)
Q Consensus       353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~V~~l~~sp~~--~L~sgs-~Dg~V~lWdl~~------  418 (519)
                      .+...+.......+.+++.....+    +..+.     .|.+....+ ++|++  .++++. .+++|.++|..+      
T Consensus       353 gr~~~va~~~sn~V~ViD~~t~kl----~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~  427 (567)
T 1qks_A          353 HRYFITAANARNKLVVIDTKEGKL----VAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN  427 (567)
T ss_dssp             SCEEEEEEGGGTEEEEEETTTTEE----EEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcE----EEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc
Confidence            011111222334455555544332    22222     233222122 57875  444553 568999999987      


Q ss_pred             -CeEEEEecC-CCcEEEEEEeeCCCCEEEEEeC-------CCeEEEEEcCCC---------cEEee---c---cCCCceE
Q 010037          419 -DRCLRVFSH-NNYVTSVAFNPVDDNYFISGSI-------DGKVRIWEVRRC---------QVVDY---T---DIREIVS  474 (519)
Q Consensus       419 -~~~~~~~~h-~~~V~~v~fsp~d~~~l~sgs~-------Dg~V~iwd~~~~---------~~~~~---~---~~~~~V~  474 (519)
                       .+.++.+.. ...-..|..+| +++++.+...       .++|.|+|+.+.         +.+..   .   .....+.
T Consensus       428 ~~kvv~~i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  506 (567)
T 1qks_A          428 AWKILDSFPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV  506 (567)
T ss_dssp             BTSEEEEEECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred             cCEEEEEEecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence             567777763 23334577899 8888888663       359999999876         22211   1   1245788


Q ss_pred             EEEEeeCCCEEEEEec-----CCeEEEEECCCCeeeeccc
Q 010037          475 AVCYCPDGKGGIVGTM-----TGNCRFYDIKGMQIFDLST  509 (519)
Q Consensus       475 ~v~~spdg~~l~sgs~-----dg~v~iwdl~~~~l~~~~~  509 (519)
                      .+.|+|+|+.+.++..     ++.|.|+|.+++++...-.
T Consensus       507 ~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          507 QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             EEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             eeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence            9999999999888743     7899999999999876533

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.10  E-value=1.4e-07  Score=90.85  Aligned_cols=233  Identities=5%  Similarity=-0.010  Sum_probs=143.1

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      +..++++++|.+.++...++.|..|+.....   ...    .+..+...+..+++.++|+++++...++.|.+||. +++
T Consensus        59 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~---~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           59 VMCLTISSDGEVWFTENAANKIGRITKKGII---KEY----TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTSCE---EEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             eeeEEECCCCCEEEeCCCCCeEEEECCCCcE---EEE----eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            3457889999988887778899999875211   111    11124457899999999998888777889999998 544


Q ss_pred             eeceeeccC--CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          318 RLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       318 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      .. .+....  ..+..+.+.+  ...++...              .....+..++. ...+.   ...+..+...+.+++
T Consensus       131 ~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~--------------~~~~~i~~~~~-~g~~~---~~~~~~~~~~~~~i~  189 (299)
T 2z2n_A          131 IR-EYELPNKGSYPSFITLGS--DNALWFTE--------------NQNNAIGRITE-SGDIT---EFKIPTPASGPVGIT  189 (299)
T ss_dssp             EE-EEECSSTTCCEEEEEECT--TSCEEEEE--------------TTTTEEEEECT-TCCEE---EEECSSTTCCEEEEE
T ss_pred             EE-EecCCCCCCCCceEEEcC--CCCEEEEe--------------CCCCEEEEEcC-CCcEE---EeeCCCCCCcceeEE
Confidence            32 222111  1122222221  12222221              11223333433 11110   001223445688999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee--ccCC
Q 010037          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIR  470 (519)
Q Consensus       396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~--~~~~  470 (519)
                      +.+++ ++++...++.|.+||. +++.... .. +...+.+++++| +++++++...++.|.+||. +++...+  ....
T Consensus       190 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~  266 (299)
T 2z2n_A          190 KGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKS  266 (299)
T ss_dssp             ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTEEEEEECSSSS
T ss_pred             ECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCceEEEeCCCCC
Confidence            99998 5555556789999999 6664432 22 456799999999 7887777667889999999 4554433  2344


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       471 ~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ..+.++++ ++|+++++.. .+.+..++..++++
T Consensus       267 ~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~~  298 (299)
T 2z2n_A          267 AEPHGICF-DGETIWFAME-CDKIGKLTLIKDNM  298 (299)
T ss_dssp             CCEEEEEE-CSSCEEEEET-TTEEEEEEEC----
T ss_pred             CccceEEe-cCCCEEEEec-CCcEEEEEcCcccC
Confidence            67899999 8888666544 67788888776543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.07  E-value=1.8e-08  Score=101.28  Aligned_cols=256  Identities=10%  Similarity=0.020  Sum_probs=156.4

Q ss_pred             eeecCCCCeEEeeec-----CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe----------CC
Q 010037          241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------ED  305 (519)
Q Consensus       241 ~~~sp~g~~lasgs~-----dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs----------~D  305 (519)
                      ....|+++.+++...     ++.|.+.|....+..       ..+..-..+ . +.++|||++|+.+.          .+
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~-------~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-------GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-------EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE-------EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence            466799998887655     689999998754421       233333444 4 99999999887765          36


Q ss_pred             CcEEEEecccCeeeceeeccC-------CCCceEEEeecC----------CCCeEEeeccCCceeeeeee----------
Q 010037          306 GTVRVWKVIEHERLDGFDVQD-------TDPSCLYFTINH----------LSQLIPIDVDKEKIDKTKSL----------  358 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~----------  358 (519)
                      +.|.+||..+.+.+..+....       ..+..+.++++.          .+.+..++....+......+          
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g  188 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA  188 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCC
Confidence            789999999999888876543       123334443332          23344444444433322221          


Q ss_pred             -----ccCCCeeEEEeCCcc-ccccccceeEeeccCCCee-EEEEc-CCCeEEEEeCCCcEEEEECCCCe--EEEEec--
Q 010037          359 -----RKSSDLTCVVLPPKV-FRLLEKPLHEFQGHSSEVL-DLSWS-KNGFLLSSSADKTVRLWQVGIDR--CLRVFS--  426 (519)
Q Consensus       359 -----~~s~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~-~l~~s-p~~~L~sgs~Dg~V~lWdl~~~~--~~~~~~--  426 (519)
                           ..+.++...+..... ..+.......+..-...+. ...|. ++|.++-.+.+++|.+.|+.++.  .+..+.  
T Consensus       189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~  268 (386)
T 3sjl_D          189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL  268 (386)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred             CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecc
Confidence                 222333333333322 1110000000111112221 24564 56755557778999999997664  332221  


Q ss_pred             ---------CCCcEEEEEEeeCCCCEEEEEeC----------CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC-EEE
Q 010037          427 ---------HNNYVTSVAFNPVDDNYFISGSI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGI  486 (519)
Q Consensus       427 ---------h~~~V~~v~fsp~d~~~l~sgs~----------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~  486 (519)
                               .......++++| +++.++....          ...|.+.|+.+++++........+..++++||++ +|+
T Consensus       269 ~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly  347 (386)
T 3sjl_D          269 TEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLY  347 (386)
T ss_dssp             CHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEE
T ss_pred             ccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEE
Confidence                     122334577788 6666666542          2579999999999997766667889999999997 666


Q ss_pred             EE-ecCCeEEEEECCCCeeee
Q 010037          487 VG-TMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       487 sg-s~dg~v~iwdl~~~~l~~  506 (519)
                      +. ..++.|.++|..+++++.
T Consensus       348 ~tn~~~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          348 ALSTGDKTLYIHDAESGEELR  368 (386)
T ss_dssp             EEETTTTEEEEEETTTCCEEE
T ss_pred             EEcCCCCeEEEEECCCCcEEE
Confidence            65 458999999999998764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.07  E-value=4.1e-08  Score=100.38  Aligned_cols=231  Identities=15%  Similarity=0.066  Sum_probs=145.5

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC--cEEEEecc
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVI  314 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg--~I~iWd~~  314 (519)
                      ....++++|++.++++...++.|++|+........  +     ... ..... ++|+++++.|+.+..++  .|.+|+..
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~--~-----~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT--V-----HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE--E-----EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE--e-----ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence            34458999999988888888999999987443211  1     111 22233 89999999999888766  78888876


Q ss_pred             cCeeecee----eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-----e
Q 010037          315 EHERLDGF----DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-----Q  385 (519)
Q Consensus       315 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~  385 (519)
                      .+.....+    ......+..+.+.+... .++...               ....+..++.....     ...+     .
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d---------------~~~~I~~~d~~~~~-----~~~~~~~~~~  261 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEE-WLYFVD---------------SNKNFGRFNVKTQE-----VTLIKQLELS  261 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSS-EEEEEC---------------TTCEEEEEETTTCC-----EEEEEECCCC
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCC-eEEEEE---------------CCCcEEEEECCCCC-----EEEEeccccc
Confidence            65433222    10222333444433221 122111               12233333322111     1111     1


Q ss_pred             ccCCCe--eEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEecCC---------------CcEEEEEEeeCCCCEEEE
Q 010037          386 GHSSEV--LDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFSHN---------------NYVTSVAFNPVDDNYFIS  446 (519)
Q Consensus       386 ~h~~~V--~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~---------------~~V~~v~fsp~d~~~l~s  446 (519)
                      ++...-  ..++|+|+ + ++++-..++.|+.|+.... ......+.               .....|+++| +++++++
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyva  339 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIV  339 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEE
Confidence            122222  38999995 5 5566667889999997754 32222222               4588999999 8888888


Q ss_pred             Ee-CCCeEEEEEcCCCcEEeeccC---------------CCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          447 GS-IDGKVRIWEVRRCQVVDYTDI---------------REIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       447 gs-~Dg~V~iwd~~~~~~~~~~~~---------------~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      -. .++.|+.|++.++.+..+.++               -.....++++|+|.++++-..++.|+.+++
T Consensus       340 d~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          340 DGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            87 889999999888877655443               245889999999888888788888988875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.06  E-value=3.3e-07  Score=88.19  Aligned_cols=235  Identities=5%  Similarity=-0.021  Sum_probs=149.1

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      ..++++.++|.+.++...++.|.+|+.. ....  ..    .+..+...+..|++.++|+++++...++.|..||.. ++
T Consensus        22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~--~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           22 PYGITSSEDGKVWFTQHKANKISSLDQS-GRIK--EF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cceeeECCCCCEEEEcCCCCeEEEECCC-CceE--EE----ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            3457899999988877778999999876 3221  11    112334678999999999988877768889999987 44


Q ss_pred             eeceeeccC--CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          318 RLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       318 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      . ..+....  ..+..+.+.  ....++....              ....+..++.. ....   ...+......+.+++
T Consensus        94 ~-~~~~~~~~~~~~~~i~~~--~~g~l~v~~~--------------~~~~i~~~~~~-g~~~---~~~~~~~~~~~~~i~  152 (300)
T 2qc5_A           94 F-TEYPLPQPDSGPYGITEG--LNGDIWFTQL--------------NGDRIGKLTAD-GTIY---EYDLPNKGSYPAFIT  152 (300)
T ss_dssp             E-EEEECSSTTCCEEEEEEC--STTCEEEEET--------------TTTEEEEECTT-SCEE---EEECSSTTCCEEEEE
T ss_pred             e-EEecCCCCCCCCccceEC--CCCCEEEEcc--------------CCCeEEEECCC-CCEE---EccCCCCCCCceeEE
Confidence            3 2232221  122222222  2222222221              12233333332 1110   011122345788999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee--ccCC
Q 010037          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIR  470 (519)
Q Consensus       396 ~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~--~~~~  470 (519)
                      +.+++ .+++...++.|..||. +++.....  .+...+..+++++ +++++++....+.|.+||. +++....  ....
T Consensus       153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~  229 (300)
T 2qc5_A          153 LGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTPN  229 (300)
T ss_dssp             ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred             ECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCC
Confidence            99998 5555555788999998 55544322  1445789999999 8888877777788999998 5555433  2345


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       471 ~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ..+.++++.++|+++++...++.|..||. ++++.
T Consensus       230 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  263 (300)
T 2qc5_A          230 ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ  263 (300)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE
T ss_pred             CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE
Confidence            66899999999996666656789999998 45443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.05  E-value=2.7e-07  Score=89.76  Aligned_cols=227  Identities=9%  Similarity=0.075  Sum_probs=139.5

Q ss_pred             eeecCC-CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037          241 ATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (519)
Q Consensus       241 ~~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~  319 (519)
                      ..|+|+ +.++++....+.|..|+.......         ...+...+.+++++++|+++++ . ++.|.+||..+++..
T Consensus        18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------RVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEE---------EEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCcEE---------EEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            578885 456666777899999998754321         1124567999999999995554 3 567999999877654


Q ss_pred             ceeeccCCC----CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          320 DGFDVQDTD----PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       320 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      .........    +..+.+.  ....++.........   ........+.+..++...      .+..+..+......++
T Consensus        87 ~~~~~~~~~~~~~~~di~~d--~dG~l~~~~~~~~~~---~~~~~~~~~~l~~~d~~g------~~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVD--PAGRYFAGTMAEETA---PAVLERHQGALYSLFPDH------HVKKYFDQVDISNGLD  155 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEEC--TTSCEEEEEEECCSB---TTBCCTTCEEEEEECTTS------CEEEEEEEESBEEEEE
T ss_pred             EEEecCCCCCCCCCCCEEEC--CCCCEEEecCCcccc---cccccCCCcEEEEEECCC------CEEEEeeccccccceE
Confidence            332221111    1112222  222233222111100   000001223344443321      1122233345568899


Q ss_pred             EcCCC-eE-EEEeCCCcEEEEEC--CCCeEE--EEe---c-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          396 WSKNG-FL-LSSSADKTVRLWQV--GIDRCL--RVF---S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       396 ~sp~~-~L-~sgs~Dg~V~lWdl--~~~~~~--~~~---~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      |+|++ .| ++.+.++.|.+|++  .++...  +.+   . +......+++++ ++++.++...++.|.+||..+++++.
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEE
Confidence            99998 44 56667889999997  455432  222   2 346788999999 88988888888999999999888775


Q ss_pred             -eccCCCceEEEEEe-eCCCEEEEEec
Q 010037          466 -YTDIREIVSAVCYC-PDGKGGIVGTM  490 (519)
Q Consensus       466 -~~~~~~~V~~v~~s-pdg~~l~sgs~  490 (519)
                       +..+...+++++|. |+++.|++++.
T Consensus       235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          235 TVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence             34444689999998 89887776654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.04  E-value=2.4e-08  Score=110.17  Aligned_cols=245  Identities=12%  Similarity=-0.004  Sum_probs=143.2

Q ss_pred             ccceeecCCCCeEEeeecC-----CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc-----
Q 010037          238 HGSATLKPGDHELTLGQRM-----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT-----  307 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~d-----g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~-----  307 (519)
                      +...+|+|||++||.+..+     .+|++|++..+....        ...+...+..++|+|| +.|+.++.|+.     
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~--------~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA--------DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE--------EEEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC--------ccCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence            4457999999999886654     469999998655311        1111112357899999 99988887654     


Q ss_pred             ---------EEEEecccCeeece--eeccCC--CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccc
Q 010037          308 ---------VRVWKVIEHERLDG--FDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (519)
Q Consensus       308 ---------I~iWd~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (519)
                               |++|++.++.....  +.....  ......+++++...++.....           ......+.+++....
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~-----------~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG-----------TDPVNTVHVARVTNG  304 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT-----------TCSCCEEEEEEEETT
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc-----------CCCcceEEEEECCCC
Confidence                     88999877653211  111111  122333333332222111100           001223444433211


Q ss_pred             cccccceeEeeccCCCeeEEEEcCCC-eEEEEeCC----CcEEEEECCCC--eEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 010037          375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----KTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVDDNYFIS  446 (519)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D----g~V~lWdl~~~--~~~~~~~-h~~~V~~v~fsp~d~~~l~s  446 (519)
                      .  .+....+..+...+.... +|++ .|+..+.+    +.|.+||+.++  .....+. +...+..+.|.  ++.++++
T Consensus       305 ~--~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~  379 (741)
T 1yr2_A          305 K--IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFAS  379 (741)
T ss_dssp             E--ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEE
T ss_pred             C--CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEE
Confidence            0  011344455555555553 4777 67666653    45999999884  4445554 44456677776  4678888


Q ss_pred             EeCCCeEEEEEcC-CCcEE-eecc-CCCceEEEEEeeCCCEEEEEe----cCCeEEEEECCCCeeeec
Q 010037          447 GSIDGKVRIWEVR-RCQVV-DYTD-IREIVSAVCYCPDGKGGIVGT----MTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       447 gs~Dg~V~iwd~~-~~~~~-~~~~-~~~~V~~v~~spdg~~l~sgs----~dg~v~iwdl~~~~l~~~  507 (519)
                      ...|+..+||.+. ++... .+.. ....+..++++|+++.|+...    ..+.|++||+.+++...+
T Consensus       380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence            8889987777554 34433 3332 356788999999998666432    347899999998875444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.03  E-value=2.8e-08  Score=98.36  Aligned_cols=226  Identities=8%  Similarity=0.006  Sum_probs=145.8

Q ss_pred             eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceE
Q 010037          253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL  332 (519)
Q Consensus       253 gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  332 (519)
                      |+.++.|.++|........ ..+....-.........+.+. +++.+++...++.|.+||..+++.+..+.. ...+..+
T Consensus        13 g~~~~~l~~~d~~t~~~~~-~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i   89 (328)
T 3dsm_A           13 QYSNATLSYYDPATCEVEN-EVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYI   89 (328)
T ss_dssp             TSCCBEEEEEETTTTEEEC-SHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEE
T ss_pred             CCCCceEEEEECCCCEEhh-hhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEE
Confidence            3458999999987654321 111000000112346778874 455556666689999999999998777742 2333444


Q ss_pred             EEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc-----CCCeeEEEEcCCCeEEEEe-
Q 010037          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-----SSEVLDLSWSKNGFLLSSS-  406 (519)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~sp~~~L~sgs-  406 (519)
                      .+.++.  .++....              .+..+.+++.....+    ...+...     ......|++ .++.|+.+. 
T Consensus        90 ~~~~~g--~lyv~~~--------------~~~~v~~iD~~t~~~----~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~  148 (328)
T 3dsm_A           90 HFLSDE--KAYVTQI--------------WDYRIFIINPKTYEI----TGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW  148 (328)
T ss_dssp             EEEETT--EEEEEEB--------------SCSEEEEEETTTTEE----EEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred             EEeCCC--eEEEEEC--------------CCCeEEEEECCCCeE----EEEEEcCCccccCCCcceEEE-ECCEEEEEcC
Confidence            443332  2322221              234455555543322    1222211     124567777 455555554 


Q ss_pred             -CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC----------CeEEEEEcCCCcEEeeccC--CCce
Q 010037          407 -ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID----------GKVRIWEVRRCQVVDYTDI--REIV  473 (519)
Q Consensus       407 -~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D----------g~V~iwd~~~~~~~~~~~~--~~~V  473 (519)
                       .++.|.+||+.+++.+..+........++++| ++++++++..+          +.|.++|..++++......  ....
T Consensus       149 ~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p  227 (328)
T 3dsm_A          149 SYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP  227 (328)
T ss_dssp             TTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             CCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence             48999999999999988887666678899999 88877776655          7899999999987743332  3468


Q ss_pred             EEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          474 SAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       474 ~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ..++++|+++.|.++..  .|.+||+.++++.
T Consensus       228 ~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~  257 (328)
T 3dsm_A          228 SEVQLNGTRDTLYWINN--DIWRMPVEADRVP  257 (328)
T ss_dssp             EEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred             eeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence            99999999999888765  8999999988764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.03  E-value=2.7e-08  Score=109.69  Aligned_cols=258  Identities=12%  Similarity=0.001  Sum_probs=137.7

Q ss_pred             ecCCCCeEEeeecCCe---EEEeeCCcc---ccccccccccc-eeecCCCCEEEEEEccCCCEEEEEeCC-----CcEEE
Q 010037          243 LKPGDHELTLGQRMRR---VRVHPVKKQ---SRELSSLYTGQ-EFLAHEGSILTMKFSLDGQYLASGGED-----GTVRV  310 (519)
Q Consensus       243 ~sp~g~~lasgs~dg~---I~vw~~~~~---~~~~~~~~~~~-~l~~H~~~I~~l~fspdg~~LaSgs~D-----g~I~i  310 (519)
                      ..|+|++++....++.   -.+|.....   ......+.... .-.+|...+..++|||||++||.+..+     ..|++
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            3488988877654432   445543311   11111110000 112344578899999999999887654     46999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ||+.+++.... .........+.|+++ .. ++......... ............+..++..........+.....+...
T Consensus       194 ~dl~tg~~~~~-~~~~~~~~~~~wspD-~~-l~~~~~~~~~~-~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          194 VGVADGKPLAD-ELKWVKFSGLAWLGN-DA-LLYSRFAEPKE-GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR  269 (741)
T ss_dssp             EETTTCCEEEE-EEEEEESCCCEESTT-SE-EEEEECCCC---------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             EECCCCCCCCc-cCCCceeccEEEECC-CE-EEEEEecCccc-ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence            99999886543 111111234455555 22 22222111100 0000000112234444433221111112222233446


Q ss_pred             eeEEEEcCCC-eEEEEeCC-----CcEEEEECCCC--e-EEEEecCCCcEEEEEEeeCCCCEEEEEeC----CCeEEEEE
Q 010037          391 VLDLSWSKNG-FLLSSSAD-----KTVRLWQVGID--R-CLRVFSHNNYVTSVAFNPVDDNYFISGSI----DGKVRIWE  457 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~D-----g~V~lWdl~~~--~-~~~~~~h~~~V~~v~fsp~d~~~l~sgs~----Dg~V~iwd  457 (519)
                      +..+.|+|+| +|+..+.+     ..|++||+.++  + ......+...+.... .| ++..|+..+.    ++.|.+||
T Consensus       270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d  347 (741)
T 1yr2_A          270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVD  347 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEe
Confidence            8899999999 77766644     38999999887  4 334444554555553 47 7777777665    35699999


Q ss_pred             cCCC--cEEee-ccCCCceEEEEEeeCCCEEEEEecCCeEEEE--ECCCCeeeec
Q 010037          458 VRRC--QVVDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFY--DIKGMQIFDL  507 (519)
Q Consensus       458 ~~~~--~~~~~-~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw--dl~~~~l~~~  507 (519)
                      +.++  +...+ ..+...+..++|. ++.++++...+|..+||  ++.++.+..+
T Consensus       348 ~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l  401 (741)
T 1yr2_A          348 LSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAV  401 (741)
T ss_dssp             CSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEEC
T ss_pred             CCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeec
Confidence            9874  33333 3344456677887 66677888889886666  4444444333

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.03  E-value=1.4e-08  Score=97.96  Aligned_cols=187  Identities=10%  Similarity=0.065  Sum_probs=132.5

Q ss_pred             CCCEEEEEeCCCcEEEEecccCeeeceeeccC-CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc
Q 010037          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV  373 (519)
Q Consensus       295 dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  373 (519)
                      .+++|++++.|+.|.+||..+++.+..+..+. .....+.+.++..  ++. .               .+..+..+++. 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~--ilv-s---------------~~~~V~~~d~~-   64 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE--ILF-S---------------YSKGAKMITRD-   64 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC--EEE-E---------------CBSEEEEECTT-
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC--EEE-e---------------CCCCEEEECCC-
Confidence            45789999999999999999999988887654 2445555554431  221 1               12234444431 


Q ss_pred             ccccccceeEeecc-CCCeeEEEEcCCC-eEEEEeC-CCcEEEEECCCCeEEEEecC-------CCcEEEEEEeeCCCCE
Q 010037          374 FRLLEKPLHEFQGH-SSEVLDLSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFSH-------NNYVTSVAFNPVDDNY  443 (519)
Q Consensus       374 ~~~~~~~~~~~~~h-~~~V~~l~~sp~~-~L~sgs~-Dg~V~lWdl~~~~~~~~~~h-------~~~V~~v~fsp~d~~~  443 (519)
                          ++.+..+..+ ...+.++.+.++| .+++.+. ++.|..+|. .++.+..+..       ......+++.+ ++++
T Consensus        65 ----G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~  138 (276)
T 3no2_A           65 ----GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNY  138 (276)
T ss_dssp             ----SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCE
T ss_pred             ----CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCE
Confidence                2334445543 3468889999999 7777776 777888875 6777766641       12345567888 8999


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee-eec
Q 010037          444 FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI-FDL  507 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l-~~~  507 (519)
                      +++...++.|..||.. ++.+........+.++...++|+.++++..++.|..+|..++++ +++
T Consensus       139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            9999999999999998 88774444345567788899999999988888999999996654 444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.99  E-value=2.4e-08  Score=101.97  Aligned_cols=246  Identities=9%  Similarity=-0.028  Sum_probs=147.4

Q ss_pred             ceeecCCCCeEEeee----------cCCeEEEeeCCcccccccccccc--ceeecCCCCEEEEEEccCCCEEEEEeC--C
Q 010037          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D  305 (519)
Q Consensus       240 ~~~~sp~g~~lasgs----------~dg~I~vw~~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~LaSgs~--D  305 (519)
                      .++++||+++++++.          .++.|.++|.......- .+...  ..+. .......+.|+|||++|+.+..  +
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~-~I~v~g~~r~~-~g~~P~~~~~spDGk~lyV~n~~~~  199 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA-DIELPDAPRFL-VGTYQWMNALTPDNKNLLFYQFSPA  199 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE-EEEETTCCCCC-BSCCGGGSEECTTSSEEEEEECSSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE-EEECCCccccc-cCCCcceEEEcCCCCEEEEEecCCC
Confidence            479999999998876          46789999987544321 11000  0000 0122346799999999998874  5


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      +.|.+.|+.+++.+..+.....    ....+.....++.+.. .+.......  ....... ... ..+          .
T Consensus       200 ~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~-dG~~~~V~~--~~~~v~~-~~~-~~~----------~  260 (426)
T 3c75_H          200 PAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCR-DGSLARVDF--ADGETKV-TNT-EVF----------H  260 (426)
T ss_dssp             CEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEET-TSSEEEEEC--CTTCCEE-EEC-CCC----------S
T ss_pred             CeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcC-CCCEEEEEC--CCCcEEE-Eee-eee----------c
Confidence            7899999999998888775321    1222221111111111 111111110  0000000 000 011          1


Q ss_pred             ccCCC-eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Eec-----------CCCcEEEEEEeeCCCCEEEEEeC-
Q 010037          386 GHSSE-VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFS-----------HNNYVTSVAFNPVDDNYFISGSI-  449 (519)
Q Consensus       386 ~h~~~-V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~--~~~-----------h~~~V~~v~fsp~d~~~l~sgs~-  449 (519)
                      ....+ ...+.+.+++ .++..+..+.|.+.|+.......  .+.           .......++++| ++..+++... 
T Consensus       261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~  339 (426)
T 3c75_H          261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQ  339 (426)
T ss_dssp             CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEE
T ss_pred             cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecc
Confidence            11111 1235678887 66666778899999987654321  111           011122378999 7666555432 


Q ss_pred             ---------CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC-EEEEEe-cCCeEEEEECCCCeeeec
Q 010037          450 ---------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       450 ---------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~sgs-~dg~v~iwdl~~~~l~~~  507 (519)
                               .+.|.+.|+.+.+++...........++|+|||+ ++++.. .++.|.++|+.+++++..
T Consensus       340 ~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          340 RDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             CCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             cccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence                     3579999999999997665556789999999999 888887 489999999999987643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.97  E-value=3.2e-08  Score=108.35  Aligned_cols=200  Identities=10%  Similarity=0.100  Sum_probs=126.8

Q ss_pred             ccceeecCCCCeEEe-----eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc-----
Q 010037          238 HGSATLKPGDHELTL-----GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT-----  307 (519)
Q Consensus       238 ~~~~~~sp~g~~las-----gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~-----  307 (519)
                      +..++|+|||++||.     |+....|+|||+..+.....      .+...  ....++|+ ||+.|+.++.+..     
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------EEEEE--ESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------ccCCc--eeccEEEe-CCCEEEEEEecCcccccc
Confidence            334689999999984     44456899999986542111      11111  12467899 9999998887743     


Q ss_pred             --------EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccc
Q 010037          308 --------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (519)
Q Consensus       308 --------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (519)
                              |++|++.++....                                                          .
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~----------------------------------------------------------~  223 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDD----------------------------------------------------------R  223 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGC----------------------------------------------------------E
T ss_pred             cccCCCcEEEEEECCCCcccc----------------------------------------------------------e
Confidence                    6666665443100                                                          0


Q ss_pred             ceeEeec-cCCCeeEEEEcCCC-eE-EEEeC---CCcEEEEECCCC--eEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-
Q 010037          380 PLHEFQG-HSSEVLDLSWSKNG-FL-LSSSA---DKTVRLWQVGID--RCLRVFSHNNYVTSVAFNPVDDNYFISGSID-  450 (519)
Q Consensus       380 ~~~~~~~-h~~~V~~l~~sp~~-~L-~sgs~---Dg~V~lWdl~~~--~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-  450 (519)
                      .+..... |...+..+.|+|+| +| ++.+.   ...|+++|+.++  .......+....... |++.++.+++....+ 
T Consensus       224 ~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~  302 (693)
T 3iuj_A          224 LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDA  302 (693)
T ss_dssp             EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTC
T ss_pred             EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCC
Confidence            1111222 44456788999999 55 44332   358999999876  444444455555555 566244455555443 


Q ss_pred             --CeEEEEEcCCCcE---EeeccCCCceEEEEEeeCCCEEEEEecCC---eEEEEECCCCeeeec
Q 010037          451 --GKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKGMQIFDL  507 (519)
Q Consensus       451 --g~V~iwd~~~~~~---~~~~~~~~~V~~v~~spdg~~l~sgs~dg---~v~iwdl~~~~l~~~  507 (519)
                        +.|.++|+.++..   ..+..+...+.  .|+++++.|+....++   .|++|++.++....+
T Consensus       303 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l  365 (693)
T 3iuj_A          303 PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREV  365 (693)
T ss_dssp             TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEe
Confidence              6899999988654   34555655555  8999999888766544   689999987765444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.94  E-value=1.5e-06  Score=85.75  Aligned_cols=221  Identities=8%  Similarity=0.022  Sum_probs=132.6

Q ss_pred             eeecCCC-CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037          241 ATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (519)
Q Consensus       241 ~~~sp~g-~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~  319 (519)
                      .+|+|++ .+++++...+.|.+|+.......        .+ .+...|.++.|+++|+++++. .+ .|.+||..+++..
T Consensus        54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--------~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~  122 (326)
T 2ghs_A           54 PTFDPASGTAWWFNILERELHELHLASGRKT--------VH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT  122 (326)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEE--------EE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEECCCCcEE--------EE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE
Confidence            5789974 55666777899999998754321        11 134579999999999877754 44 4999998877643


Q ss_pred             ceeeccCC----CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          320 DGFDVQDT----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       320 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      ........    .+..+.+.+  ...++........        ......+..++ .     + .+..+..+......++
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~--------~~~~~~l~~~~-~-----g-~~~~~~~~~~~~~~i~  185 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKA--------ETGAGSIYHVA-K-----G-KVTKLFADISIPNSIC  185 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTC--------CTTCEEEEEEE-T-----T-EEEEEEEEESSEEEEE
T ss_pred             EEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcC--------CCCceEEEEEe-C-----C-cEEEeeCCCcccCCeE
Confidence            22221111    111222222  2223222111000        00112233332 1     0 1112222334567899


Q ss_pred             EcCCC-eE-EEEeCCCcEEEEECC--CC-e-----EEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          396 WSKNG-FL-LSSSADKTVRLWQVG--ID-R-----CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       396 ~sp~~-~L-~sgs~Dg~V~lWdl~--~~-~-----~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      |+|++ .| ++.+.++.|.+|++.  ++ .     ....+. ....+..+++.+ +++++++...++.|.+||. +++.+
T Consensus       186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~~  263 (326)
T 2ghs_A          186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHI  263 (326)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEE
T ss_pred             EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCEE
Confidence            99999 55 444567899999986  55 2     222232 345678999999 8888888777789999998 45554


Q ss_pred             -eeccCCCceEEEEEe-eCCCEEEEEecC
Q 010037          465 -DYTDIREIVSAVCYC-PDGKGGIVGTMT  491 (519)
Q Consensus       465 -~~~~~~~~V~~v~~s-pdg~~l~sgs~d  491 (519)
                       .+..+...+++++|. |+++.|++++..
T Consensus       264 ~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          264 ARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence             444455579999998 898877666544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.90  E-value=1e-07  Score=90.57  Aligned_cols=197  Identities=12%  Similarity=-0.029  Sum_probs=125.0

Q ss_pred             CEEEEEEccCCCEEE-EEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCe
Q 010037          286 SILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (519)
Q Consensus       286 ~I~~l~fspdg~~La-Sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (519)
                      ...+++++++|++++ +...++.|.+|+..+.............+..+.+.++.  .++....               ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g--~l~v~~~---------------~~   87 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG--TVYVTDF---------------NN   87 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC--CEEEEET---------------TT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC--CEEEEcC---------------CC
Confidence            678999999999777 54778899999976554321111111233344443322  1222211               23


Q ss_pred             eEEEeCCccccccccceeEee-ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCC
Q 010037          365 TCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD  441 (519)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~  441 (519)
                      .+..++....     ....+. .....+.++++.+++ .+++...++.|.+|+..+....... .....+.+|+++| ++
T Consensus        88 ~i~~~d~~~~-----~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g  161 (270)
T 1rwi_B           88 RVVTLAAGSN-----NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SG  161 (270)
T ss_dssp             EEEEECTTCS-----CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TC
T ss_pred             EEEEEeCCCc-----eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CC
Confidence            3444443321     111121 223568899999998 6666667889999987665443222 2334678999999 88


Q ss_pred             CEEEEEeCCCeEEEEEcCCCcEEeec-cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          442 NYFISGSIDGKVRIWEVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       442 ~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +++++...++.|.+||.......... .....+..++++++|.++++...++.|.+|+..+....
T Consensus       162 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~  226 (270)
T 1rwi_B          162 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST  226 (270)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE
T ss_pred             CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce
Confidence            88888777889999999887665432 23367899999999977777777889999999876543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.90  E-value=1.4e-06  Score=83.79  Aligned_cols=228  Identities=5%  Similarity=0.007  Sum_probs=139.6

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      ..+++.+++.+.++...++.|.+++.. ....  ..    .+......+.++++.++|+++++...++.|..|+.. ++.
T Consensus        65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~--~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFT--EY----PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EE----ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             eeEEECCCCCEEEEecCCCeEEEECCC-CCeE--Ee----cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            357888999888777778899999876 3221  11    112234578999999999988877778899999986 443


Q ss_pred             eceeecc--CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          319 LDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       319 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      . .+...  ...+..+.+.+  ...++.....              ...+..++.. ....   ......+...+.++++
T Consensus       137 ~-~~~~~~~~~~~~~i~~d~--~g~l~v~~~~--------------~~~i~~~~~~-g~~~---~~~~~~~~~~~~~i~~  195 (300)
T 2qc5_A          137 Y-EYDLPNKGSYPAFITLGS--DNALWFTENQ--------------NNSIGRITNT-GKLE---EYPLPTNAAAPVGITS  195 (300)
T ss_dssp             E-EEECSSTTCCEEEEEECT--TSSEEEEETT--------------TTEEEEECTT-CCEE---EEECSSTTCCEEEEEE
T ss_pred             E-EccCCCCCCCceeEEECC--CCCEEEEecC--------------CCeEEEECCC-CcEE---EeeCCCCCCCcceEEE
Confidence            3 22222  11222222222  2223322211              2223333331 0000   0111234456889999


Q ss_pred             cCCC-eEEEEeCCCcEEEEECCCCeEEEE-ec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee--ccCCC
Q 010037          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIRE  471 (519)
Q Consensus       397 sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~--~~~~~  471 (519)
                      .+++ .+++....+.|.+||. +++.... +. +...+.+|++++ +++++++...++.|..||. +++...+  .....
T Consensus       196 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  272 (300)
T 2qc5_A          196 GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENA  272 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTC
T ss_pred             CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcEEEEECCccCC
Confidence            9988 4444455678999998 5544433 22 456789999999 7887777767789999998 4555433  22345


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .+.++++.++|+++++.. . .|..+|..
T Consensus       273 ~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          273 EPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             ccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            688999999998555544 4 77777653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.88  E-value=2e-07  Score=90.96  Aligned_cols=234  Identities=9%  Similarity=-0.029  Sum_probs=134.8

Q ss_pred             ceeecCCCC-eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037          240 SATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       240 ~~~~sp~g~-~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      ..+|+|+++ +++++..++.|..|+... ..        ..+..+...+..++++++|+++++...++.|.+|+.. ++.
T Consensus        49 gp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~--------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDLVGRRVLGWREDG-TV--------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETTS-CE--------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEeCCC-CE--------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence            368999998 667777889999998642 21        1244466778999999999976665566789999975 442


Q ss_pred             eceeeccC----CCCceEEEeecCCCCeEEeeccCCce---eeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          319 LDGFDVQD----TDPSCLYFTINHLSQLIPIDVDKEKI---DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       319 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      ........    ..+..+.+.+.  ..++..+......   .............+..++.....     +..+. +....
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-----~~~~~-~~~~p  190 (305)
T 3dr2_A          119 HLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-----LQRMA-DLDHP  190 (305)
T ss_dssp             EEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-----CEEEE-EESSE
T ss_pred             EEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-----EEEEe-cCCCC
Confidence            21111100    11222333322  2222211000000   00000000112345555543211     11122 33456


Q ss_pred             eEEEEcCCC-eEEEEeCC------CcEEEEECCCCeEE--EEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          392 LDLSWSKNG-FLLSSSAD------KTVRLWQVGIDRCL--RVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs~D------g~V~lWdl~~~~~~--~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      ..++|+|++ .|+.+...      +.|.+|++..+...  ..+.  .......+++++ ++++.++. .+ .|.+|+.. 
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~-~~-gv~~~~~~-  266 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSS-GT-GVCVFDSD-  266 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECC-SS-EEEEECTT-
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEec-CC-cEEEECCC-
Confidence            789999999 67666554      78999998765411  1221  234456789999 88855544 44 59999985 


Q ss_pred             CcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEE
Q 010037          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCR  495 (519)
Q Consensus       461 ~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~  495 (519)
                      ++.+........+.+++|.|+++.|++++.++..+
T Consensus       267 g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          267 GQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             SCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEE
Confidence            55543333334688999999999888888764433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.87  E-value=7.1e-08  Score=96.03  Aligned_cols=210  Identities=10%  Similarity=0.083  Sum_probs=131.5

Q ss_pred             cccceeecCCCCeEEeeec--CCeEEEeeCCcccccccccccc-ceeecCCCCEEEEEEccCCCEEEEEeC-----CCcE
Q 010037          237 RHGSATLKPGDHELTLGQR--MRRVRVHPVKKQSRELSSLYTG-QEFLAHEGSILTMKFSLDGQYLASGGE-----DGTV  308 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~--dg~I~vw~~~~~~~~~~~~~~~-~~l~~H~~~I~~l~fspdg~~LaSgs~-----Dg~I  308 (519)
                      ....++++|+|+.+++...  ++.++||.+....  +..+... .....|-..+..|+++++|+++++-..     ++.|
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            3445899999999888542  3435566554221  1111100 112346678999999999886665433     5789


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      .+||+.+++.+..+..+...                                                        ..+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~--------------------------------------------------------~~~~  119 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPI--------------------------------------------------------TLSN  119 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTT--------------------------------------------------------SCTT
T ss_pred             EEEECCCCeEEEEEECChhh--------------------------------------------------------cccc
Confidence            99999888755444321100                                                        0123


Q ss_pred             CCeeEEEEcCC-Ce-EEEEe---CCCcEEEEECCCCeEEEEecC------------------------------CCcEEE
Q 010037          389 SEVLDLSWSKN-GF-LLSSS---ADKTVRLWQVGIDRCLRVFSH------------------------------NNYVTS  433 (519)
Q Consensus       389 ~~V~~l~~sp~-~~-L~sgs---~Dg~V~lWdl~~~~~~~~~~h------------------------------~~~V~~  433 (519)
                      ..+..++++++ +. +++..   .++.|.+||+.+++..+.+..                              ...++.
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~g  199 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNG  199 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEE
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccce
Confidence            34577888875 43 44444   577888899887776665421                              023688


Q ss_pred             EEEeeCCCCEEEEEeCCC-eEEEEEcC---CCcE--------EeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          434 VAFNPVDDNYFISGSIDG-KVRIWEVR---RCQV--------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg-~V~iwd~~---~~~~--------~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      |+|+| +++.|+.+..++ .|..++..   .+..        +...++......++++++|+++++...++.|.+||..+
T Consensus       200 ia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~  278 (343)
T 2qe8_A          200 IVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD  278 (343)
T ss_dssp             EEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT
T ss_pred             eEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC
Confidence            99999 888888887766 55554432   1110        11112333566799999999988888899999999955


Q ss_pred             Ceee
Q 010037          502 MQIF  505 (519)
Q Consensus       502 ~~l~  505 (519)
                      +++.
T Consensus       279 G~~~  282 (343)
T 2qe8_A          279 RAYK  282 (343)
T ss_dssp             TEEE
T ss_pred             CCEE
Confidence            6543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.85  E-value=1.9e-07  Score=93.74  Aligned_cols=231  Identities=12%  Similarity=0.027  Sum_probs=138.1

Q ss_pred             eeecCCCCeEEeee----------cCCeEEEeeCCccccccccccccceeecC-------CCCEEEEEEccCCCEEEEEe
Q 010037          241 ATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASGG  303 (519)
Q Consensus       241 ~~~sp~g~~lasgs----------~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~LaSgs  303 (519)
                      ++++|+|++++++.          .++.|.+||.......       .++.-.       ...-..+.|+|||++|+.+.
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~-------~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan  155 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT-------ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ  155 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-------EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE-------EEEECCCccccccCCCCceEEEcCCCCEEEEEE
Confidence            79999999998765          3678999998754421       112110       11345689999999988886


Q ss_pred             C--CCcEEEEecccCeeeceeeccCCC-----CceEEEeecCCCCeEEeeccC-Cceeee--ee----------------
Q 010037          304 E--DGTVRVWKVIEHERLDGFDVQDTD-----PSCLYFTINHLSQLIPIDVDK-EKIDKT--KS----------------  357 (519)
Q Consensus       304 ~--Dg~I~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~----------------  357 (519)
                      .  ++.|.++|+.+++.+..+......     ....++.....+.++.+.... .+....  ..                
T Consensus       156 ~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~  235 (386)
T 3sjl_D          156 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ  235 (386)
T ss_dssp             CSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred             cCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc
Confidence            4  689999999999988888653210     000001111122233233222 111000  00                


Q ss_pred             -----eccCCCeeEEEeCCccccccccceeEee---------c-cCCCeeEEEEcCCC-eEEEEeC----------CCcE
Q 010037          358 -----LRKSSDLTCVVLPPKVFRLLEKPLHEFQ---------G-HSSEVLDLSWSKNG-FLLSSSA----------DKTV  411 (519)
Q Consensus       358 -----~~~s~~~~~~~~~~~~~~~~~~~~~~~~---------~-h~~~V~~l~~sp~~-~L~sgs~----------Dg~V  411 (519)
                           +..+..+.+.+++......  +.+..+.         + ....+..+++++++ +|+....          ...|
T Consensus       236 ~dG~~~~vs~~g~V~v~d~~~~~~--~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V  313 (386)
T 3sjl_D          236 KAGRLVWPTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  313 (386)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             CCCcEEEEeCCCEEEEEECCCCcc--eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence                 0011112222222211000  0011110         0 12234457778887 5555432          2579


Q ss_pred             EEEECCCCeEEEEecCCCcEEEEEEeeCCCC-EEEEEe-CCCeEEEEEcCCCcEEeeccCCCceEEEEEeeC
Q 010037          412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD  481 (519)
Q Consensus       412 ~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs-~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spd  481 (519)
                      .+.|+.+++.++.+.-...++.|+++| +++ +|++.. .++.|.++|..+++++.........+.+.+++|
T Consensus       314 ~viD~~t~kv~~~i~vg~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          314 VVLDAKTGERLAKFEMGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEETTTCCEEEEEEEEEEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             EEEECCCCeEEEEEECCCCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            999999999999998667899999999 775 666654 589999999999999976666666677777776

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.81  E-value=9.8e-07  Score=90.08  Aligned_cols=205  Identities=13%  Similarity=0.032  Sum_probs=126.4

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCe
Q 010037          285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (519)
Q Consensus       285 ~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (519)
                      .....|+|+++++++++...++.|++||..++......... .... +.+.+... .++.......             .
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~-~l~~~d~~~~-------------~  194 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQ-RVYSIGWEGT-------------H  194 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSS-EEEEEBSSTT-------------C
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCC-cEEEEecCCC-------------c
Confidence            45789999999998888777899999999887765443331 1122 33333221 1222221111             0


Q ss_pred             eEEEeCCccccccccceeEeec-cCCCeeEEEEcC-CCeEEEEeCCCcEEEEECCCCeEEEE----ec-CCCcE--EEEE
Q 010037          365 TCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSK-NGFLLSSSADKTVRLWQVGIDRCLRV----FS-HNNYV--TSVA  435 (519)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp-~~~L~sgs~Dg~V~lWdl~~~~~~~~----~~-h~~~V--~~v~  435 (519)
                      .+..++...... ...+..+.. +...+.+++++| ++.|+.+..++.|+.||..++.....    .. +...-  ..++
T Consensus       195 ~I~~~d~~~~~~-~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia  273 (409)
T 3hrp_A          195 TVYVYMKASGWA-PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLI  273 (409)
T ss_dssp             EEEEEEGGGTTC-EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEE
T ss_pred             eEEEEEcCCCce-eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEE
Confidence            222222211000 000111112 446678999999 56666677788999999987764332    11 11112  3999


Q ss_pred             EeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccC---------------CCceEEEEEeeCCCEEEEEe-cCCeEEEEEC
Q 010037          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI---------------REIVSAVCYCPDGKGGIVGT-MTGNCRFYDI  499 (519)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~---------------~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl  499 (519)
                      |+|.++.++++-..++.|+.|+.... ...+.+.               -.....++++|+|+++++-. .++.|+.|++
T Consensus       274 ~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          274 YYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred             EeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence            99944666677777889999998754 3322222               13478999999999777777 7889999998


Q ss_pred             CCCeeeec
Q 010037          500 KGMQIFDL  507 (519)
Q Consensus       500 ~~~~l~~~  507 (519)
                      .++++..+
T Consensus       353 ~~G~v~~~  360 (409)
T 3hrp_A          353 LDGYVSTV  360 (409)
T ss_dssp             TTTEEEEE
T ss_pred             CCCEEEEE
Confidence            88876543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.80  E-value=7.5e-10  Score=111.75  Aligned_cols=185  Identities=10%  Similarity=0.079  Sum_probs=98.6

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      ++..+++++.||.|+.||...++..-.       +..  +.+.+..+..++..+++++.||.|+.||..+++.+..+...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~-------~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWT-------LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEE-------EEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE-------ecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            577889999999999999876554211       122  34445555667777888889999999999887753322110


Q ss_pred             CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEE
Q 010037          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS  405 (519)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sg  405 (519)
                      ..                                                   ...     ...++    ...++.++++
T Consensus        79 ~~---------------------------------------------------~~~-----~~sp~----~~~~~~v~~g   98 (369)
T 2hz6_A           79 IP---------------------------------------------------ELV-----QASPC----RSSDGILYMG   98 (369)
T ss_dssp             HH---------------------------------------------------HHH-----TTCSC----C-----CCCC
T ss_pred             Cc---------------------------------------------------ccc-----ccCce----EecCCEEEEE
Confidence            00                                                   000     01111    1123467778


Q ss_pred             eCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCC---
Q 010037          406 SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDG---  482 (519)
Q Consensus       406 s~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg---  482 (519)
                      +.|+.|+.||..+++.+..+....   .+.++| ++..+++++.|+.|+.||.++++.+...... .....++.+++   
T Consensus        99 ~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~  173 (369)
T 2hz6_A           99 KKQDIWYVIDLLTGEKQQTLSSAF---ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATYF-DYAASLPEDDVDYK  173 (369)
T ss_dssp             EEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE-EECCBCCCCCTTCC
T ss_pred             eCCCEEEEEECCCCcEEEEecCCC---cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEecc-cccCccccCCcccc
Confidence            889999999999999887776333   245677 7888999999999999999998866221111 11223333432   


Q ss_pred             CEEEEEecCCeEEEEECCCCee
Q 010037          483 KGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       483 ~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ..+++++.+|.|+.||..++++
T Consensus       174 ~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          174 MSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             CCEEEEETSCEEEEECTTTCCE
T ss_pred             ceEEEECCCCEEEEEECCCCcE
Confidence            4677889999999999988765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.78  E-value=3.7e-07  Score=88.71  Aligned_cols=203  Identities=10%  Similarity=0.108  Sum_probs=120.0

Q ss_pred             cCCCCEEEEEEccCCCEEEE-------EeCCCcEEEEecccCeeeceeec-----cCCCCceEEEeecCCCCeEEeeccC
Q 010037          282 AHEGSILTMKFSLDGQYLAS-------GGEDGTVRVWKVIEHERLDGFDV-----QDTDPSCLYFTINHLSQLIPIDVDK  349 (519)
Q Consensus       282 ~H~~~I~~l~fspdg~~LaS-------gs~Dg~I~iWd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  349 (519)
                      ..-....+++|+++|+++++       +..++.|.+|+..+++... +..     ....+..+.+.+.. ..++....  
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-g~l~v~~~--   90 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDA-NQLFVADM--   90 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSS-SEEEEEET--
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCC-CcEEEEEC--
Confidence            33445689999999988877       5678899999987776432 211     11122222222210 11222111  


Q ss_pred             CceeeeeeeccCCCeeEEEeCCccccccccceeEe-eccCCCeeEEEEcCCC-eEEEEeCC---------------CcEE
Q 010037          350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKNG-FLLSSSAD---------------KTVR  412 (519)
Q Consensus       350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~L~sgs~D---------------g~V~  412 (519)
                                  . ..+..++.. ........... ..+...+.++++.++| ++++...+               +.|.
T Consensus        91 ------------~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~  156 (314)
T 1pjx_A           91 ------------R-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY  156 (314)
T ss_dssp             ------------T-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred             ------------C-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence                        1 123333332 11100000000 0122458899999999 44444443               4677


Q ss_pred             EEECCCCeEEEEecCCCcEEEEEEe----eCCCCEE-EEEeCCCeEEEEEcC-CCcEE------eeccCC-CceEEEEEe
Q 010037          413 LWQVGIDRCLRVFSHNNYVTSVAFN----PVDDNYF-ISGSIDGKVRIWEVR-RCQVV------DYTDIR-EIVSAVCYC  479 (519)
Q Consensus       413 lWdl~~~~~~~~~~h~~~V~~v~fs----p~d~~~l-~sgs~Dg~V~iwd~~-~~~~~------~~~~~~-~~V~~v~~s  479 (519)
                      .|+.. ++......+......++|+    | +++.+ ++...++.|.+||+. +++..      ....+. ..+..++++
T Consensus       157 ~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d  234 (314)
T 1pjx_A          157 CFTTD-GQMIQVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD  234 (314)
T ss_dssp             EECTT-SCEEEEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred             EECCC-CCEEEeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence            77766 5555544455567899999    9 77655 444568899999986 44421      122222 567889999


Q ss_pred             eCCCEEEEEecCCeEEEEECCCCee
Q 010037          480 PDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       480 pdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ++|+++++...++.|.+||..++++
T Consensus       235 ~~G~l~v~~~~~~~i~~~d~~~g~~  259 (314)
T 1pjx_A          235 EDNNLLVANWGSSHIEVFGPDGGQP  259 (314)
T ss_dssp             TTCCEEEEEETTTEEEEECTTCBSC
T ss_pred             CCCCEEEEEcCCCEEEEEcCCCCcE
Confidence            9999888877889999999986554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.73  E-value=7.3e-07  Score=97.47  Aligned_cols=200  Identities=13%  Similarity=0.132  Sum_probs=126.8

Q ss_pred             cceeecCCCCeEEeeecCC-------------eEEEeeCCccccccccccccceeec-CCCCEEEEEEccCCCEEEEEeC
Q 010037          239 GSATLKPGDHELTLGQRMR-------------RVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGE  304 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg-------------~I~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~LaSgs~  304 (519)
                      ..++|+ |++.|+.+..+.             .|++|++.....+-..++   .... |...+..+.|+|||++|+....
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~  253 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAA  253 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEE
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEc
Confidence            468999 999999887774             489998875443211111   1123 4556788999999998865432


Q ss_pred             ----CCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc
Q 010037          305 ----DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (519)
Q Consensus       305 ----Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (519)
                          +..|.+||+.++..                                                             .
T Consensus       254 ~~~~~~~i~~~d~~~~~~-------------------------------------------------------------~  272 (693)
T 3iuj_A          254 NSTSGNRLYVKDLSQENA-------------------------------------------------------------P  272 (693)
T ss_dssp             SSSSCCEEEEEETTSTTC-------------------------------------------------------------C
T ss_pred             cCCCCcEEEEEECCCCCC-------------------------------------------------------------c
Confidence                24788888765421                                                             0


Q ss_pred             eeEeeccCCCeeEEEEcCCC-e-EEEEeCC---CcEEEEECCCCeE---EEEecCCCcEEEEEEeeCCCCEEEEEeC-CC
Q 010037          381 LHEFQGHSSEVLDLSWSKNG-F-LLSSSAD---KTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGSI-DG  451 (519)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~~-~-L~sgs~D---g~V~lWdl~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg  451 (519)
                      ...+..+....... |++++ . ++.+..+   +.|.++|+.++..   .....|...+.  .|+| ++++|+.... ++
T Consensus       273 ~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~~~~~g  348 (693)
T 3iuj_A          273 LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFAEYMVDA  348 (693)
T ss_dssp             CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEEEEEETT
T ss_pred             eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEEEEEECC
Confidence            11122233333333 44554 3 3444333   6799999988654   33445665555  8999 6777766554 44


Q ss_pred             --eEEEEEcCCCcEEeec-cCCCceEEEEEeeCCCEEEEEecC----CeEEEEECCCCeeeec
Q 010037          452 --KVRIWEVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMT----GNCRFYDIKGMQIFDL  507 (519)
Q Consensus       452 --~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~sgs~d----g~v~iwdl~~~~l~~~  507 (519)
                        .|++||+..+....+. .....+..+.++|+++.|+....+    +.++.||+.+++...+
T Consensus       349 ~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l  411 (693)
T 3iuj_A          349 TARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY  411 (693)
T ss_dssp             EEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred             eeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence              6899999866544432 234567788888999877776555    8899999988765443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.69  E-value=1.4e-06  Score=87.41  Aligned_cols=233  Identities=10%  Similarity=-0.061  Sum_probs=132.8

Q ss_pred             eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEecccCeeeceeeccC-
Q 010037          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVRVWKVIEHERLDGFDVQD-  326 (519)
Q Consensus       258 ~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs----------~Dg~I~iWd~~~~~~~~~~~~~~-  326 (519)
                      +|.|.|....+..       .++..-..+  .+.++||+++|+.+.          .++.|.+||+.+++....+..+. 
T Consensus        47 ~vsvID~~t~~v~-------~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGCGVTL-------GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             EEEEEETTTTEEE-------EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             eEEEEECCCCeEE-------EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence            7889987754432       233333345  799999999888886          36899999999999998887651 


Q ss_pred             ------CCCceEEEeecCCCCeEEeecc-CCceee---------eee---------------eccCCCeeEEEeCCcc--
Q 010037          327 ------TDPSCLYFTINHLSQLIPIDVD-KEKIDK---------TKS---------------LRKSSDLTCVVLPPKV--  373 (519)
Q Consensus       327 ------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~---------------~~~s~~~~~~~~~~~~--  373 (519)
                            ..+..+.++++....... +.. ...+..         ...               +..+.++.+...+...  
T Consensus       118 ~~~~~g~~P~~ia~SpDGk~lyVa-n~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~  196 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCASSACLLFF-LFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEE-ECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             cccccCCCcceEEEcCCCCEEEEE-ccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence                  345566666655432222 111 110000         000               0011111111111111  


Q ss_pred             ---ccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEecC-----------CCcEEEEEE
Q 010037          374 ---FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFSH-----------NNYVTSVAF  436 (519)
Q Consensus       374 ---~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~--~~~~~~~h-----------~~~V~~v~f  436 (519)
                         ..........+.-...+.   . .+++ .++..+. +.|.+.|+.+.  +.+..+..           ......+++
T Consensus       197 ~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~  271 (368)
T 1mda_H          197 AAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             ccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence               000000000000011122   2 4444 5555555 89999998654  23332211           111122789


Q ss_pred             eeCCCCEEEEEeC---------CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCE-EEEEe-cCCeEEEEECCCCeee
Q 010037          437 NPVDDNYFISGSI---------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG-GIVGT-MTGNCRFYDIKGMQIF  505 (519)
Q Consensus       437 sp~d~~~l~sgs~---------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~-l~sgs-~dg~v~iwdl~~~~l~  505 (519)
                      +| +++.++.+..         ++.+.++|+.+.+++...........++|+|||+. +++.. .++.|.++|+.+++++
T Consensus       272 s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          272 LK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             ET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             cC-CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence            99 7776665432         23566999999998876555557899999999985 55555 4899999999999876


Q ss_pred             e
Q 010037          506 D  506 (519)
Q Consensus       506 ~  506 (519)
                      .
T Consensus       351 ~  351 (368)
T 1mda_H          351 S  351 (368)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.63  E-value=1.3e-06  Score=85.18  Aligned_cols=157  Identities=7%  Similarity=0.002  Sum_probs=109.2

Q ss_pred             eecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeee
Q 010037          280 FLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (519)
Q Consensus       280 l~~H~~~I~~l~fspdg~-~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (519)
                      +..+........|+|+|+ ++++...++.|..|+. +++.                                        
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~----------------------------------------   78 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV----------------------------------------   78 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE----------------------------------------
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE----------------------------------------
Confidence            444555677899999998 5677777889999986 3321                                        


Q ss_pred             ccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEe-CCCcEEEEECCCCeEEEEec-----CCCcEE
Q 010037          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS-ADKTVRLWQVGIDRCLRVFS-----HNNYVT  432 (519)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs-~Dg~V~lWdl~~~~~~~~~~-----h~~~V~  432 (519)
                                             ..+..+...+..++++++|.|+++. .++.|.+|+.. ++......     ....++
T Consensus        79 -----------------------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~  134 (305)
T 3dr2_A           79 -----------------------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN  134 (305)
T ss_dssp             -----------------------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred             -----------------------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence                                   1112234567889999999555554 55789999986 55433322     123467


Q ss_pred             EEEEeeCCCCEEEE----EeC-------------CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC----
Q 010037          433 SVAFNPVDDNYFIS----GSI-------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT----  491 (519)
Q Consensus       433 ~v~fsp~d~~~l~s----gs~-------------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d----  491 (519)
                      .++++| +++++++    |..             .+.|..||..+++..... .....+.++|+|||+.|+++...    
T Consensus       135 ~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~  212 (305)
T 3dr2_A          135 DLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGH  212 (305)
T ss_dssp             CEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---
T ss_pred             CEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCC
Confidence            899999 8998886    432             256888888777655444 44567889999999988887665    


Q ss_pred             --CeEEEEECCCCe
Q 010037          492 --GNCRFYDIKGMQ  503 (519)
Q Consensus       492 --g~v~iwdl~~~~  503 (519)
                        +.|++|++..+.
T Consensus       213 ~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          213 GSVEITAFAWRDGA  226 (305)
T ss_dssp             CCCEEEEEEEETTE
T ss_pred             CCCEEEEEEecCCC
Confidence              689999987544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.59  E-value=6.1e-07  Score=89.93  Aligned_cols=228  Identities=7%  Similarity=-0.066  Sum_probs=130.1

Q ss_pred             ceeecCCCCeEEeee----------cCCeEEEeeCCccccccccccccceeecC-------CCCEEEEEEccCCCEEEEE
Q 010037          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASG  302 (519)
Q Consensus       240 ~~~~sp~g~~lasgs----------~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~LaSg  302 (519)
                      .++++|++++++++.          .++.|.+||.......       .++..+       -.....+.|+|||++|+.+
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-------~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa  141 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-------ADIELPDAPRFSVGPRVHIIGNCASSACLLFF  141 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-------EEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence            479999999998886          4789999998854432       222211       0224578999999999988


Q ss_pred             eC--CCcEEE--EecccCeeeceeeccCCC-----CceEEEeecCCCCeEEeeccC-----Cceeee----eee-----c
Q 010037          303 GE--DGTVRV--WKVIEHERLDGFDVQDTD-----PSCLYFTINHLSQLIPIDVDK-----EKIDKT----KSL-----R  359 (519)
Q Consensus       303 s~--Dg~I~i--Wd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~-----~  359 (519)
                      ..  ...|.+  +|+.+   +..+......     ....++.....+.+..+....     .+....    ..+     .
T Consensus       142 n~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~  218 (368)
T 1mda_H          142 LFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ  218 (368)
T ss_dssp             ECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE
T ss_pred             ccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc
Confidence            64  457888  99877   3334322110     000111112222333333332     111000    000     0


Q ss_pred             cCCC--------eeEEEeCCccccccccceeEee-------c---cCCCeeEEEEcCCC-eEEEEeC---------CCcE
Q 010037          360 KSSD--------LTCVVLPPKVFRLLEKPLHEFQ-------G---HSSEVLDLSWSKNG-FLLSSSA---------DKTV  411 (519)
Q Consensus       360 ~s~~--------~~~~~~~~~~~~~~~~~~~~~~-------~---h~~~V~~l~~sp~~-~L~sgs~---------Dg~V  411 (519)
                      ....        +.+.+++.....  .+.+..+.       .   .......++++|++ +++.+..         +..+
T Consensus       219 ~~~~~~~~~vs~~~V~viD~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~  296 (368)
T 1mda_H          219 ANYPGMLVWAVASSILQGDIPAAG--ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             ETTTTEEEECBSSCCEEEECCSSC--CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             cccCCEEEEEcCCEEEEEECCCCc--ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence            0000        112222211000  00000000       0   01112236899998 5554432         2356


Q ss_pred             EEEECCCCeEEEEecCCCcEEEEEEeeCCCC-EEEEEe-CCCeEEEEEcCCCcEEeeccCCCceEEEEEee
Q 010037          412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP  480 (519)
Q Consensus       412 ~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs-~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp  480 (519)
                      .++|+.+.+.+..+.-......|+|+| +++ ++++.. .++.|.++|+.+.+++...........+++.+
T Consensus       297 ~ViD~~t~~vv~~i~vg~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          297 SSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EEEESSSCCEEECCEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred             EEEECCCCeEEEEEECCCCcceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeec
Confidence            699999999999887555799999999 776 666776 59999999999999997766666666676654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.57  E-value=1.7e-05  Score=79.78  Aligned_cols=191  Identities=10%  Similarity=-0.030  Sum_probs=125.6

Q ss_pred             ecCCCCeEEeeec--CC---eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe----------CCCc
Q 010037          243 LKPGDHELTLGQR--MR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGT  307 (519)
Q Consensus       243 ~sp~g~~lasgs~--dg---~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs----------~Dg~  307 (519)
                      ..|+++++.+...  ..   .|.++|....+..       ..+.....+  .+.++|||++|+.+.          .++.
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-------~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~   98 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-------GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE-------EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence            3467776666543  22   8899998754421       223333334  899999999998885          3678


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      |.+||..+.+.+..+.....                                                     .. .. +
T Consensus        99 v~viD~~t~~~~~~i~~~~~-----------------------------------------------------~~-~~-~  123 (373)
T 2mad_H           99 VEVFDPVTFLPIADIELPDA-----------------------------------------------------PR-FD-V  123 (373)
T ss_pred             EEEEECCCCcEEEEEECCCc-----------------------------------------------------cc-cc-c
Confidence            99999987765444332100                                                     00 00 1


Q ss_pred             CCCeeEEEEcCCC-eEEEEeC--CCcEEEEECCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcE
Q 010037          388 SSEVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~--Dg~V~lWdl~~~~~~~~-~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~  463 (519)
                      ......++|+|+| +|+.+..  ++.|.++| .+++.+.. +.....   +.+.|...+.+++.+.||++.++|. +++.
T Consensus       124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~  198 (373)
T 2mad_H          124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGA  198 (373)
T ss_pred             CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence            1234578999999 7777764  57899999 99999888 765443   5566745567778888999999999 8776


Q ss_pred             Eeec------cCCCc-eEEEEEeeCCCEEEEEecCCeEEEEECCCC
Q 010037          464 VDYT------DIREI-VSAVCYCPDGKGGIVGTMTGNCRFYDIKGM  502 (519)
Q Consensus       464 ~~~~------~~~~~-V~~v~~spdg~~l~sgs~dg~v~iwdl~~~  502 (519)
                      +...      ....+ .....+.+++..++..+..+.+.+.|+.+.
T Consensus       199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence            6321      11112 234567787766666567889999998754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.54  E-value=7.6e-06  Score=80.59  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=76.9

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecC-----CCcEEEEEEeeCCCCEEEEEeC------CCeEEEEE
Q 010037          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-----NNYVTSVAFNPVDDNYFISGSI------DGKVRIWE  457 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h-----~~~V~~v~fsp~d~~~l~sgs~------Dg~V~iwd  457 (519)
                      ..+.+++|++++.++.++.+ .|.+||..+++.......     ...++.++++| +++++++...      .+.|..++
T Consensus        90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence            45788999999944445544 499999988876544331     24689999999 8887766542      24566666


Q ss_pred             cCCCcEEeeccCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECC--CC
Q 010037          458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIK--GM  502 (519)
Q Consensus       458 ~~~~~~~~~~~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~--~~  502 (519)
                        +++...+.........++|+|||+.|+.+ +.++.|.+|++.  ++
T Consensus       168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G  213 (326)
T 2ghs_A          168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  213 (326)
T ss_dssp             --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence              55554443334457899999999877655 457899999985  55

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.53  E-value=6.7e-06  Score=83.37  Aligned_cols=195  Identities=16%  Similarity=0.229  Sum_probs=127.2

Q ss_pred             eec--CCCCeEEe-eecCCeEEEeeCCccccccccccccceee------c-CCCCEEEEEEccCCCEEEEEeCC------
Q 010037          242 TLK--PGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFL------A-HEGSILTMKFSLDGQYLASGGED------  305 (519)
Q Consensus       242 ~~s--p~g~~las-gs~dg~I~vw~~~~~~~~~~~~~~~~~l~------~-H~~~I~~l~fspdg~~LaSgs~D------  305 (519)
                      .++  +++++|++ |-.+++|.|+|+........   ..+++.      . -...-..+...|+| .++++..+      
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~---~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~  163 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPK---IIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP  163 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE---EEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCce---eeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence            445  77777755 77789999999864322111   112221      0 11134567888999 77776555      


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      |.|.+.|..+.+.+..+.....                                                          
T Consensus       164 g~v~vlD~~T~~v~~~~~~~~~----------------------------------------------------------  185 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEIDRG----------------------------------------------------------  185 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSBCT----------------------------------------------------------
T ss_pred             CeEEEEECCCCeEEEEEccCCC----------------------------------------------------------
Confidence            6788888887776554432110                                                          


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEe-------------------CCCcEEEEECCCCeEEEEecCC---CcEEEEEE--eeCC
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSS-------------------ADKTVRLWQVGIDRCLRVFSHN---NYVTSVAF--NPVD  440 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs-------------------~Dg~V~lWdl~~~~~~~~~~h~---~~V~~v~f--sp~d  440 (519)
                       ....-.++-|+|++ .+++..                   ...+|.+||+.+++.++++...   .....|.|  +| +
T Consensus       186 -~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-d  263 (462)
T 2ece_A          186 -DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-T  263 (462)
T ss_dssp             -TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-T
T ss_pred             -CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-C
Confidence             01122356778887 666663                   3789999999999888888743   34556666  99 8


Q ss_pred             CCEEEEEe------CCCeEEEEEcCCCc-----EEeecc----------------CCCceEEEEEeeCCCEEEEEec-CC
Q 010037          441 DNYFISGS------IDGKVRIWEVRRCQ-----VVDYTD----------------IREIVSAVCYCPDGKGGIVGTM-TG  492 (519)
Q Consensus       441 ~~~l~sgs------~Dg~V~iwd~~~~~-----~~~~~~----------------~~~~V~~v~~spdg~~l~sgs~-dg  492 (519)
                      ++++.+++      .+++|.+|....++     .+....                .......|.++|||++|.++.. .+
T Consensus       264 g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d  343 (462)
T 2ece_A          264 KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG  343 (462)
T ss_dssp             CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT
T ss_pred             CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC
Confidence            88777766      56788887765542     111111                0245788999999999988766 67


Q ss_pred             eEEEEECC
Q 010037          493 NCRFYDIK  500 (519)
Q Consensus       493 ~v~iwdl~  500 (519)
                      .|.+||+.
T Consensus       344 ~VavfdV~  351 (462)
T 2ece_A          344 EVRQYDIS  351 (462)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEec
Confidence            89999986

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.49  E-value=1.2e-06  Score=87.03  Aligned_cols=225  Identities=8%  Similarity=0.017  Sum_probs=129.7

Q ss_pred             ecccceeecCCCCeEEeeec-----CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC-EEEEEe---CCC
Q 010037          236 DRHGSATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGG---EDG  306 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasgs~-----dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs---~Dg  306 (519)
                      ..+..++++|++++.++-..     .+.|.+||....... ..+........+...+..+++++++. .+++-.   .++
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~-~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~  145 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLS-RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA  145 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEE-EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEE-EEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence            34556899999987776544     578999998754421 11111001112334578999998654 445554   678


Q ss_pred             cEEEEecccCeeeceeeccCCC-CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          307 TVRVWKVIEHERLDGFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      .|.+||+.+++....+..+... .....+....           ..     ......++.+.                  
T Consensus       146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g-----------~~-----~~~~~~~g~~~------------------  191 (343)
T 2qe8_A          146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG-----------VP-----VQIGQPDGTVI------------------  191 (343)
T ss_dssp             EEEEEETTTCCEEEECTTCTTTSCCSCCCEETT-----------EE-----CBEECTTSCEE------------------
T ss_pred             eEEEEECCCCCEEEEecCCCcccccccceeECC-----------EE-----EEeccCCCcee------------------
Confidence            9999999887754433221100 0000000000           00     00000011100                  


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC-----Ce--------EEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-----DR--------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDG  451 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~-----~~--------~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (519)
                      .....+..|+|+|++ .|+.+..++. ++|.+..     +.        .+....+......+++++ +++++++...++
T Consensus       192 ~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~  269 (343)
T 2qe8_A          192 RPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHS  269 (343)
T ss_dssp             CCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGT
T ss_pred             ceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCC
Confidence            011346789999999 7877776653 4444321     10        012223344567799999 899999998999


Q ss_pred             eEEEEEcCCCcEEeecc--CCCceEEEEEeeCCCEEEEEecCCeEEEE
Q 010037          452 KVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (519)
Q Consensus       452 ~V~iwd~~~~~~~~~~~--~~~~V~~v~~spdg~~l~sgs~dg~v~iw  497 (519)
                      .|.+||..+++......  ....++++++.++|+++++.+..+.+.+|
T Consensus       270 ~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          270 AIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             EEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             eEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence            99999995665443322  24568999999999988887755554443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.49  E-value=8.3e-06  Score=79.06  Aligned_cols=199  Identities=12%  Similarity=0.072  Sum_probs=117.1

Q ss_pred             CCEEEEEEccCC-CEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCC
Q 010037          285 GSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (519)
Q Consensus       285 ~~I~~l~fspdg-~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  363 (519)
                      .-.-+..|++++ .++++...++.|..||..++... .+.. ...+..+.+.++..  ++...                .
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~~~~i~~~~dG~--l~v~~----------------~   72 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM-DAPVSSVALRQSGG--YVATI----------------G   72 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC-SSCEEEEEEBTTSS--EEEEE----------------T
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC-CCceEEEEECCCCC--EEEEE----------------C
Confidence            345678999954 56666677899999999877542 2222 22334444443332  22211                1


Q ss_pred             eeEEEeCCccccccccceeEee--ccCCCeeEEEEcCCCeEEEEe-C---------CCcEEEEECCC-CeEEEEecCCCc
Q 010037          364 LTCVVLPPKVFRLLEKPLHEFQ--GHSSEVLDLSWSKNGFLLSSS-A---------DKTVRLWQVGI-DRCLRVFSHNNY  430 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~L~sgs-~---------Dg~V~lWdl~~-~~~~~~~~h~~~  430 (519)
                      ..+..++.....+  +.+....  .....+.+++++|+|.|+.++ .         .....||.+.. ++......+...
T Consensus        73 ~~l~~~d~~~g~~--~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~  150 (297)
T 3g4e_A           73 TKFCALNWKEQSA--VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDI  150 (297)
T ss_dssp             TEEEEEETTTTEE--EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESB
T ss_pred             CeEEEEECCCCcE--EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecccc
Confidence            1223333221110  0011111  112457899999999433333 1         23345665543 344444445556


Q ss_pred             EEEEEEeeCCCCEE-EEEeCCCeEEEEEc--CCCcEE------eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          431 VTSVAFNPVDDNYF-ISGSIDGKVRIWEV--RRCQVV------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       431 V~~v~fsp~d~~~l-~sgs~Dg~V~iwd~--~~~~~~------~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .+.++|+| +++.| ++.+.++.|.+|++  .++.+.      .+......+..+++.++|++.++....+.|..||..+
T Consensus       151 pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t  229 (297)
T 3g4e_A          151 SNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT  229 (297)
T ss_dssp             EEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred             ccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence            78999999 88765 55566789999997  455432      1222345678999999998777777788899999987


Q ss_pred             Ceeee
Q 010037          502 MQIFD  506 (519)
Q Consensus       502 ~~l~~  506 (519)
                      +++..
T Consensus       230 G~~~~  234 (297)
T 3g4e_A          230 GKRLQ  234 (297)
T ss_dssp             CCEEE
T ss_pred             ceEEE
Confidence            77643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.38  E-value=2.6e-05  Score=79.53  Aligned_cols=192  Identities=11%  Similarity=0.043  Sum_probs=128.7

Q ss_pred             CCCCeEEeeec-C----CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe----------CCCcEE
Q 010037          245 PGDHELTLGQR-M----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVR  309 (519)
Q Consensus       245 p~g~~lasgs~-d----g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs----------~Dg~I~  309 (519)
                      |+++.+++... +    +.|.+.|....+..       ..+..-..+  .+.++|||++|+.+.          .++.|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-------~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-------GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-------EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-------EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence            45555555433 2    79999998754432       223323345  799999999887775          367899


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      ++|..+++.+..+......                                                      .+ ....
T Consensus       153 viD~~t~~vv~~I~v~g~~------------------------------------------------------r~-~~g~  177 (426)
T 3c75_H          153 VFDPVTFLPIADIELPDAP------------------------------------------------------RF-LVGT  177 (426)
T ss_dssp             EECTTTCCEEEEEEETTCC------------------------------------------------------CC-CBSC
T ss_pred             EEECCCCcEEEEEECCCcc------------------------------------------------------cc-ccCC
Confidence            9999888766554331000                                                      00 0012


Q ss_pred             CeeEEEEcCCC-eEEEEeC--CCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee
Q 010037          390 EVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~--Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~  466 (519)
                      ....++++|+| +|+.+..  ++.|.+.|+.+++.+..+.-...   ....|.....+++.+.||++.+.+..++++...
T Consensus       178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~  254 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVT  254 (426)
T ss_dssp             CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence            34578899999 7777764  57899999999999998875443   344553457778888899999899866665521


Q ss_pred             ----cc-CCCc-eEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          467 ----TD-IREI-VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       467 ----~~-~~~~-V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                          .. ...+ ...+.|.+++..++..+..|.|.+.|+.+..
T Consensus       255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG  297 (426)
T ss_dssp             ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred             eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence                11 1111 1235789999988888889999999986554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.37  E-value=0.0004  Score=65.75  Aligned_cols=233  Identities=8%  Similarity=-0.031  Sum_probs=124.7

Q ss_pred             CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCCcEEEEecccCeeeceeeccC
Q 010037          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQD  326 (519)
Q Consensus       248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~I~iWd~~~~~~~~~~~~~~  326 (519)
                      .+|+.+.. +.|+.+++.......  ......+......+..++|++++..|+ +-..++.|..+++........+....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~--~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKK--TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCG--GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             cEEEEEcC-CeEEEEEecCccccc--ccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence            44555543 578888876543210  000001122234578999999765555 44457899999987654322222111


Q ss_pred             CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee-ccCCCeeEEEEcCC-CeEEE
Q 010037          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKN-GFLLS  404 (519)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~-~~L~s  404 (519)
                      ..+..+.+.+.. ..++.......              .+..++..     +.....+. ........++++|+ +.|+.
T Consensus        79 ~~p~~ia~d~~~-~~lyv~d~~~~--------------~I~~~~~~-----g~~~~~~~~~~~~~P~~i~vd~~~g~lyv  138 (267)
T 1npe_A           79 GSPEGIALDHLG-RTIFWTDSQLD--------------RIEVAKMD-----GTQRRVLFDTGLVNPRGIVTDPVRGNLYW  138 (267)
T ss_dssp             CCEEEEEEETTT-TEEEEEETTTT--------------EEEEEETT-----SCSCEEEECSSCSSEEEEEEETTTTEEEE
T ss_pred             CCccEEEEEecC-CeEEEEECCCC--------------EEEEEEcC-----CCCEEEEEECCCCCccEEEEeeCCCEEEE
Confidence            233334433221 22332222221              22222111     01111111 11245689999995 45555


Q ss_pred             EeC---CCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEe
Q 010037          405 SSA---DKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC  479 (519)
Q Consensus       405 gs~---Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s  479 (519)
                      +..   .+.|..+++......... ..-.....++++| ++..| ++-...+.|.++|+.................++. 
T Consensus       139 ~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~-  216 (267)
T 1npe_A          139 TDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS-  216 (267)
T ss_dssp             EECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE-
T ss_pred             EECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE-
Confidence            443   468888887654322222 2334688999999 65554 5555678999999986554433322334456665 


Q ss_pred             eCCCEEEEEe-cCCeEEEEECCCCeeee
Q 010037          480 PDGKGGIVGT-MTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       480 pdg~~l~sgs-~dg~v~iwdl~~~~l~~  506 (519)
                       ++..|+++. ..+.|.++|..++++..
T Consensus       217 -d~~~lyva~~~~~~v~~~d~~~g~~~~  243 (267)
T 1npe_A          217 -YGKNLYYTDWKTNSVIAMDLAISKEMD  243 (267)
T ss_dssp             -ETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -eCCEEEEEECCCCeEEEEeCCCCCceE
Confidence             345555555 56899999999887654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.32  E-value=3.9e-05  Score=83.43  Aligned_cols=91  Identities=11%  Similarity=0.162  Sum_probs=68.5

Q ss_pred             CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec--cCCCceEEEEEeeCCCEEE
Q 010037          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIREIVSAVCYCPDGKGGI  486 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~~spdg~~l~  486 (519)
                      +.|..||+.+++.+-.+.+...+....+.+ .+.+++.++.||.|++||+.+++++...  .......-+.|.++|+.++
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            789999999999998887766666667777 7788888999999999999999988432  3333334567788997554


Q ss_pred             EE-ec----------------CCeEEEEECC
Q 010037          487 VG-TM----------------TGNCRFYDIK  500 (519)
Q Consensus       487 sg-s~----------------dg~v~iwdl~  500 (519)
                      +. +.                .+.+.+|.+.
T Consensus       536 ~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          536 SVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             EEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             EEeccCCccccccccccccCCCCeEEEEecc
Confidence            42 22                3677777775

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.27  E-value=5.6e-05  Score=79.28  Aligned_cols=249  Identities=11%  Similarity=0.001  Sum_probs=149.2

Q ss_pred             CCCCeEEeeec-CCeEEEeeCCccccccccccccceee-cCCCCEEEEEE-c-cCCCEEEEEe-----------------
Q 010037          245 PGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKF-S-LDGQYLASGG-----------------  303 (519)
Q Consensus       245 p~g~~lasgs~-dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~f-s-pdg~~LaSgs-----------------  303 (519)
                      |||+++.+... +++|.+.|+...+.       .+.+. .....+..+++ + |++.+++.++                 
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~-------~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~  171 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKC-------DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  171 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEE-------EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceE-------eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence            48888877554 56799999875432       12111 11235788888 5 9999998885                 


Q ss_pred             -CCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCce-----------eeeee---------eccCC
Q 010037          304 -EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI-----------DKTKS---------LRKSS  362 (519)
Q Consensus       304 -~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---------~~~s~  362 (519)
                       .++.+.+.|..+.+...++.... .+..+...+++ ..++.........           .....         +..+.
T Consensus       172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk  249 (595)
T 1fwx_A          172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  249 (595)
T ss_dssp             GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence             34679999999998888877654 34455554442 2222222211110           00000         00000


Q ss_pred             ---CeeEEEeCCccccccccc-eeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe------------EEEE
Q 010037          363 ---DLTCVVLPPKVFRLLEKP-LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR------------CLRV  424 (519)
Q Consensus       363 ---~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~------------~~~~  424 (519)
                         -+.+.+++.....  .+. +..+.. .....++.++|+|  .++++..+.+|.++|+.+.+            ....
T Consensus       250 ~~~i~~V~VID~~~~~--~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          250 YQELNGVKVVDGRKEA--SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             SEEETTEEEEECSGGG--CCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             eeEECcEEEEeCcccC--CceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence               0123344333211  112 222221 2356789999999  45555678999999999653            4555


Q ss_pred             ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCC----------CcEEeeccCCCceE------EEEEeeCCCEEEEE
Q 010037          425 FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----------CQVVDYTDIREIVS------AVCYCPDGKGGIVG  488 (519)
Q Consensus       425 ~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~----------~~~~~~~~~~~~V~------~v~~spdg~~l~sg  488 (519)
                      ..-......++|+| +|...++...|++|.+||+.+          .+++.........-      .+.++|||++|+++
T Consensus       327 v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          327 PELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             CBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             cCCCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence            55667789999999 885556677899999999977          45554333222221      22457999999987


Q ss_pred             ecC--CeE-----------EEEECCCCeeee
Q 010037          489 TMT--GNC-----------RFYDIKGMQIFD  506 (519)
Q Consensus       489 s~d--g~v-----------~iwdl~~~~l~~  506 (519)
                      ..-  ..+           .++|+.++++..
T Consensus       406 Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l  436 (595)
T 1fwx_A          406 SKFSKDRFLNVGPLKPENDQLIDISGDKMVL  436 (595)
T ss_dssp             ESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred             CCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence            642  233           889998766543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.27  E-value=0.0002  Score=67.91  Aligned_cols=189  Identities=6%  Similarity=-0.003  Sum_probs=122.7

Q ss_pred             ceeecCCCCeEEeeec--CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCCcEEEEecccC
Q 010037          240 SATLKPGDHELTLGQR--MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEH  316 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~--dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~I~iWd~~~~  316 (519)
                      .++|+|++.+.++.+.  ++.|.+.|...++.... ..    +..+. ....+++.  ++.|. +.-.++.|.++|..+.
T Consensus        25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~-i~----l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI-HK----MDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE-EE----CCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred             cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE-Ee----cCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence            4789998754444432  68999999986553221 11    11221 12245554  44454 4446789999999888


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      +.+..+...                                                              ...-..  .
T Consensus        97 ~v~~~i~~g--------------------------------------------------------------~~~g~g--l  112 (266)
T 2iwa_A           97 SNIKNFTHQ--------------------------------------------------------------MKDGWG--L  112 (266)
T ss_dssp             EEEEEEECC--------------------------------------------------------------SSSCCE--E
T ss_pred             cEEEEEECC--------------------------------------------------------------CCCeEE--E
Confidence            765544321                                                              000112  3


Q ss_pred             cCCC-eEEEEeCCCcEEEEECCCCeEEEEecCC------CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccC
Q 010037          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI  469 (519)
Q Consensus       397 sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~------~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~  469 (519)
                      ++++ .|+.+..+++|.++|..+.+.+..+.-.      ..++.+.|.  ++..++....++.|.+.|..+++++.....
T Consensus       113 t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          113 ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             EECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence            3455 5666667899999999999988887521      246788887  465666655688999999999998854432


Q ss_pred             C--------------CceEEEEEeeCCCEEE-EEecCCeEEEEECCCC
Q 010037          470 R--------------EIVSAVCYCPDGKGGI-VGTMTGNCRFYDIKGM  502 (519)
Q Consensus       470 ~--------------~~V~~v~~spdg~~l~-sgs~dg~v~iwdl~~~  502 (519)
                      .              ...+.|+|+|+++.|+ ++...+.+.+.++...
T Consensus       191 ~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          191 PNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             HHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            1              3568999999987655 5556788888887643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.27  E-value=5.1e-05  Score=82.51  Aligned_cols=104  Identities=12%  Similarity=0.109  Sum_probs=80.2

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecCC--C----------cE------------------------EEEEEeeCCCCEE
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFSHN--N----------YV------------------------TSVAFNPVDDNYF  444 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~--~----------~V------------------------~~v~fsp~d~~~l  444 (519)
                      .++.++.+|.|+++|..+++.+..+...  .          .+                        ..++|+| +..++
T Consensus       329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~  407 (677)
T 1kb0_A          329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLV  407 (677)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEE
Confidence            6788899999999999999988766411  1          11                        1468899 67777


Q ss_pred             EEEeC-------------------------------------------CCeEEEEEcCCCcEEeeccCCCceEEEEEeeC
Q 010037          445 ISGSI-------------------------------------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD  481 (519)
Q Consensus       445 ~sgs~-------------------------------------------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spd  481 (519)
                      ++...                                           .|.|..||+.+++++-...+...+....+..+
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~  487 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA  487 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC
Confidence            76543                                           27899999999998855555555666677788


Q ss_pred             CCEEEEEecCCeEEEEECCCCeee
Q 010037          482 GKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       482 g~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +..+++++.||.+++||+.+++++
T Consensus       488 g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          488 GNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCcEEEEECCCCcee
Confidence            889999999999999999998764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.27  E-value=9.2e-08  Score=96.32  Aligned_cols=141  Identities=12%  Similarity=0.053  Sum_probs=76.5

Q ss_pred             CCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccc
Q 010037          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (519)
Q Consensus       295 dg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (519)
                      ++..|++++.||.|+.||..+++.+..+..                                                  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--------------------------------------------------   37 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--------------------------------------------------   37 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence            577899999999999999999886544322                                                  


Q ss_pred             cccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCC--CcEEE-EEEeeCCCCEEEEEeCC
Q 010037          375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTS-VAFNPVDDNYFISGSID  450 (519)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~--~~V~~-v~fsp~d~~~l~sgs~D  450 (519)
                                    +.+.+..+..++ .+++++.|+.|+.||..+++.+..+...  ..+.+ ..+.  .+..+++|+.|
T Consensus        38 --------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~d  101 (369)
T 2hz6_A           38 --------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQ  101 (369)
T ss_dssp             --------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEE
T ss_pred             --------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCC
Confidence                          111122223445 6677789999999999998877665421  11100 0111  34567888889


Q ss_pred             CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       451 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      +.|+.||..+++.+.......   ...++|++..|++++.+|.|+.||..++++
T Consensus       102 g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A          102 DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             EEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             CEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence            999999999998874332222   245677888999999999999999998875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.24  E-value=5.8e-05  Score=82.23  Aligned_cols=104  Identities=13%  Similarity=0.156  Sum_probs=76.9

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecCCC--c--------------------------------------EEEEEEeeCC
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNN--Y--------------------------------------VTSVAFNPVD  440 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~--~--------------------------------------V~~v~fsp~d  440 (519)
                      .++.++.+|.++++|..+++.+.......  .                                      -..++|+| +
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~  399 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-D  399 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-C
Confidence            57888899999999999999875432110  0                                      11268888 6


Q ss_pred             CCEEEEEeC---------------------------------------------CCeEEEEEcCCCcEEeeccCCCceEE
Q 010037          441 DNYFISGSI---------------------------------------------DGKVRIWEVRRCQVVDYTDIREIVSA  475 (519)
Q Consensus       441 ~~~l~sgs~---------------------------------------------Dg~V~iwd~~~~~~~~~~~~~~~V~~  475 (519)
                      ..++++...                                             +|.|+.||+.+++++-...+...+..
T Consensus       400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~  479 (689)
T 1yiq_A          400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG  479 (689)
T ss_dssp             TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred             CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC
Confidence            666666532                                             37899999999998854444444444


Q ss_pred             EEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          476 VCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       476 v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ..+...|.++++|+.||.++.||.++++++
T Consensus       480 g~~~tagglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          480 GTLSTAGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccceECCCEEEEECCCCcEEEEECCCCccc
Confidence            567778889999999999999999998754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.24  E-value=0.00012  Score=71.62  Aligned_cols=202  Identities=8%  Similarity=-0.002  Sum_probs=118.0

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCcccccccccccc------------ceeecCCCCEEEEEEcc-CCCEEEEEeCC
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSILTMKFSL-DGQYLASGGED  305 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~------------~~l~~H~~~I~~l~fsp-dg~~LaSgs~D  305 (519)
                      ..+++++++.++.++..++.|..|+..............            .........+..|++.+ +|+ |+.+...
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~  100 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCY  100 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETT
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECC
Confidence            357899999888888889999999876432211000000            00001123578999998 665 4445444


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      +.|..+|..++.. ..+..                                                          ...
T Consensus       101 ~~i~~~d~~~g~~-~~~~~----------------------------------------------------------~~~  121 (322)
T 2fp8_A          101 YHLSVVGSEGGHA-TQLAT----------------------------------------------------------SVD  121 (322)
T ss_dssp             TEEEEECTTCEEC-EEEES----------------------------------------------------------EET
T ss_pred             CCEEEEeCCCCEE-EEecc----------------------------------------------------------cCC
Confidence            4577777654321 11100                                                          000


Q ss_pred             -ccCCCeeEEEEcC-CCeEEEEeC------------------CCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE
Q 010037          386 -GHSSEVLDLSWSK-NGFLLSSSA------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       386 -~h~~~V~~l~~sp-~~~L~sgs~------------------Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~  445 (519)
                       ........+++.+ +|.|+.+..                  ++.|..||..+++.......-...+.|+|+| ++++|+
T Consensus       122 ~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~ly  200 (322)
T 2fp8_A          122 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DSSFVL  200 (322)
T ss_dssp             TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TSSEEE
T ss_pred             CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CCCEEE
Confidence             0112356678888 773333321                  3678888887776544333223456799999 887555


Q ss_pred             EE-eCCCeEEEEEcCCC---cEEeeccCCCceEEEEEeeCCCEEEEEec----------CCeEEEEECCCC
Q 010037          446 SG-SIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKGM  502 (519)
Q Consensus       446 sg-s~Dg~V~iwd~~~~---~~~~~~~~~~~V~~v~~spdg~~l~sgs~----------dg~v~iwdl~~~  502 (519)
                      .+ +..+.|.+|++...   ....+..... ...+++.++|+++++...          .+.|..+|..+.
T Consensus       201 v~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~  270 (322)
T 2fp8_A          201 VAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN  270 (322)
T ss_dssp             EEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC
T ss_pred             EEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCC
Confidence            44 56689999998752   2211212223 788999999986666544          466888887543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.23  E-value=7.4e-05  Score=70.94  Aligned_cols=155  Identities=8%  Similarity=0.034  Sum_probs=105.9

Q ss_pred             EEEEEEccCCCEEEEEeC--CCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCe
Q 010037          287 ILTMKFSLDGQYLASGGE--DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (519)
Q Consensus       287 I~~l~fspdg~~LaSgs~--Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (519)
                      ...|.|++++..+++.+.  ++.|++.|+.+++.+..+.....                                     
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-------------------------------------   65 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-------------------------------------   65 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-------------------------------------
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-------------------------------------
Confidence            689999998765555553  57999999999987655432110                                     


Q ss_pred             eEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCC-CcEEEEEEeeCCCCE
Q 010037          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDNY  443 (519)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~-~~V~~v~fsp~d~~~  443 (519)
                                              .....+++..+...++.-.++.|.++|..+.+.+..+... ..  ...+++ ++..
T Consensus        66 ------------------------~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~~  118 (266)
T 2iwa_A           66 ------------------------YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGKI  118 (266)
T ss_dssp             ------------------------CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSSS
T ss_pred             ------------------------cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCCE
Confidence                                    0112344443224445557889999999999999998744 22  234566 6665


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEeeccCC------CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          444 FISGSIDGKVRIWEVRRCQVVDYTDIR------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       444 l~sgs~Dg~V~iwd~~~~~~~~~~~~~------~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ++++..+++|.++|..+.+++......      ..++.+.|. +|...+....++.|.+.|+.++++..
T Consensus       119 l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~  186 (266)
T 2iwa_A          119 LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG  186 (266)
T ss_dssp             EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE
Confidence            666667889999999998877432221      236788888 77655555567899999999998754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.23  E-value=6.9e-05  Score=75.96  Aligned_cols=182  Identities=12%  Similarity=0.129  Sum_probs=112.2

Q ss_pred             eeecCCCCeEEeeecC------CeEEEeeCCccccccccccccceeecCC-CCEEEEEEccCCCEEEEEe----------
Q 010037          241 ATLKPGDHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGG----------  303 (519)
Q Consensus       241 ~~~sp~g~~lasgs~d------g~I~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs----------  303 (519)
                      +...|+| +++++..+      |.|.+.|.......- .+..    ..+. .--..+-|+|+++.+++..          
T Consensus       143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~-~~~~----~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g  216 (462)
T 2ece_A          143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG-KWEI----DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDG  216 (462)
T ss_dssp             EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE-ECCS----BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred             eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE-EEcc----CCCCccccceEEECCCCCEEEEccCcCccccccc
Confidence            4677888 66554444      789999987443211 1110    1111 1234578899999888874          


Q ss_pred             ---------CCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccc
Q 010037          304 ---------EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (519)
Q Consensus       304 ---------~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (519)
                               ...+|.+||+.+++.+..+....                                                
T Consensus       217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~------------------------------------------------  248 (462)
T 2ece_A          217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE------------------------------------------------  248 (462)
T ss_dssp             CCTTTHHHHSCCEEEEEETTTTEEEEEEESCT------------------------------------------------
T ss_pred             cchhhhhhccCCEEEEEECCCCcEeeEEecCC------------------------------------------------
Confidence                     36799999998876554443210                                                


Q ss_pred             cccccceeEeeccCCCeeEE--EEcCCC-eEEE-Ee-----CCCcEEEEECCCCeE--EEEe--cC--------------
Q 010037          375 RLLEKPLHEFQGHSSEVLDL--SWSKNG-FLLS-SS-----ADKTVRLWQVGIDRC--LRVF--SH--------------  427 (519)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l--~~sp~~-~L~s-gs-----~Dg~V~lWdl~~~~~--~~~~--~h--------------  427 (519)
                                  .......|  +|+|++ +++. +-     .+++|.+|....++.  ++.+  ..              
T Consensus       249 ------------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f  316 (462)
T 2ece_A          249 ------------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF  316 (462)
T ss_dssp             ------------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred             ------------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence                        00112233  348888 4444 44     667887766554432  1111  10              


Q ss_pred             ---CCcEEEEEEeeCCCCEEEEEeC-CCeEEEEEcCC---CcEEeeccCC---------------CceEEEEEeeCCCEE
Q 010037          428 ---NNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR---CQVVDYTDIR---------------EIVSAVCYCPDGKGG  485 (519)
Q Consensus       428 ---~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~---~~~~~~~~~~---------------~~V~~v~~spdg~~l  485 (519)
                         ......|.++| |+++|.++.. .+.|.+||+..   .+++......               .....++++|||++|
T Consensus       317 ~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L  395 (462)
T 2ece_A          317 KAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV  395 (462)
T ss_dssp             TEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred             ccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence               24578899999 8988887765 78999999863   2444322222               135789999999999


Q ss_pred             EEEe
Q 010037          486 IVGT  489 (519)
Q Consensus       486 ~sgs  489 (519)
                      +++.
T Consensus       396 yVaN  399 (462)
T 2ece_A          396 YVTN  399 (462)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9988

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.19  E-value=0.00013  Score=71.06  Aligned_cols=216  Identities=14%  Similarity=0.046  Sum_probs=130.9

Q ss_pred             CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccC
Q 010037          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD  326 (519)
Q Consensus       247 g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~  326 (519)
                      +..+.+++.++.|..++.. +... .      .+..+...+.++...+++. |..++.++.|..+|.. ++....+....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~-~------~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEK-W------RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEE-E------EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEE-E------EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence            5567778888999999876 3321 1      1222334456667777776 5567788999999988 76655554433


Q ss_pred             CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEe
Q 010037          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS  406 (519)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs  406 (519)
                      .....+...  ....++..               +  ..+..++..     ++.+..+......+.++...+++.|..++
T Consensus       177 ~~~~~~~~d--~~g~l~v~---------------t--~~l~~~d~~-----g~~~~~~~~~~~~~~~~~~~~~g~l~v~t  232 (330)
T 3hxj_A          177 AITSAASIG--KDGTIYFG---------------S--DKVYAINPD-----GTEKWNFYAGYWTVTRPAISEDGTIYVTS  232 (330)
T ss_dssp             CCCSCCEEC--TTCCEEEE---------------S--SSEEEECTT-----SCEEEEECCSSCCCSCCEECTTSCEEEEE
T ss_pred             CceeeeEEc--CCCEEEEE---------------e--CEEEEECCC-----CcEEEEEccCCcceeceEECCCCeEEEEc
Confidence            322222221  11111111               1  223333311     12223333344668888888888888888


Q ss_pred             CCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCE
Q 010037          407 ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKG  484 (519)
Q Consensus       407 ~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~  484 (519)
                      .++.|..+|. ++..+..+. ....+.++.+.+ ++ .|..++.+|.|..+|. +++.+ ........+.++...++|+ 
T Consensus       233 ~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-  307 (330)
T 3hxj_A          233 LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-  307 (330)
T ss_dssp             TTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-
T ss_pred             CCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-
Confidence            8888999974 555555554 333344455554 44 5667788889999996 56655 3333445567777778886 


Q ss_pred             EEEEecCCeEEEEECCC
Q 010037          485 GIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       485 l~sgs~dg~v~iwdl~~  501 (519)
                      |.+++.+|.+++.....
T Consensus       308 l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          308 IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             EEEECTTSCEEEEEC--
T ss_pred             EEEEcCCCeEEEEeccc
Confidence            67789999999987754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.18  E-value=0.0027  Score=63.11  Aligned_cols=248  Identities=10%  Similarity=0.056  Sum_probs=134.9

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceee-cC--CCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeecee
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF  322 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~-~H--~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~  322 (519)
                      .+..+++++.++.|..+|...++..-. ........ .+  ...+.+.- ..++..++.++.++.|..+|..+++.+...
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWS-VSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEE-EECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeee-ecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            456777788889999999875553211 11100000 00  12232221 224557778889999999999999887666


Q ss_pred             eccCCCCce------EEEeecCCCCeEEeeccCCceeeeee---------------------eccCCCeeEEEeCCcccc
Q 010037          323 DVQDTDPSC------LYFTINHLSQLIPIDVDKEKIDKTKS---------------------LRKSSDLTCVVLPPKVFR  375 (519)
Q Consensus       323 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~s~~~~~~~~~~~~~~  375 (519)
                      .........      ..+.......+..++...+.......                     +.+..++.+..++...  
T Consensus       130 ~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~t--  207 (376)
T 3q7m_A          130 KVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQ--  207 (376)
T ss_dssp             ECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTT--
T ss_pred             eCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCC--
Confidence            554322111      12222223334444443322211111                     1111122222232221  


Q ss_pred             ccccceeEeeccCC-------CeeEEEEc---CCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE
Q 010037          376 LLEKPLHEFQGHSS-------EVLDLSWS---KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       376 ~~~~~~~~~~~h~~-------~V~~l~~s---p~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~  445 (519)
                        ++.+........       .+..+.-.   .++.++.++.++.|..+|..+++.+....... ...+..   ++..++
T Consensus       208 --G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~---~~~~l~  281 (376)
T 3q7m_A          208 --GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV---DGNRIY  281 (376)
T ss_dssp             --CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE---ETTEEE
T ss_pred             --CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE---ECCEEE
Confidence              111111111100       00001111   13478888889999999999998887665333 344443   456788


Q ss_pred             EEeCCCeEEEEEcCCCcEEeecc-C-CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          446 SGSIDGKVRIWEVRRCQVVDYTD-I-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       446 sgs~Dg~V~iwd~~~~~~~~~~~-~-~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      .++.++.|..+|..+++.+.... . ...+.....  .+..|++++.+|.++++|..++++.
T Consensus       282 ~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          282 LVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             EEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence            88889999999999998873322 1 222222333  3567889999999999999988764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.15  E-value=9e-05  Score=80.73  Aligned_cols=79  Identities=14%  Similarity=0.185  Sum_probs=59.8

Q ss_pred             CCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-ec-cCCCceEEEEEeeCCCEE
Q 010037          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT-DIREIVSAVCYCPDGKGG  485 (519)
Q Consensus       408 Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~-~~~~~V~~v~~spdg~~l  485 (519)
                      ++.|+.||+.+++.+-.+.+...+..-.+.. .+.+++.|+.||.|+.||.++++++. +. .......-+.|..+|+..
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            4789999999999988887555555556666 78899999999999999999999984 32 222223457788999754


Q ss_pred             EE
Q 010037          486 IV  487 (519)
Q Consensus       486 ~s  487 (519)
                      ++
T Consensus       533 v~  534 (689)
T 1yiq_A          533 VT  534 (689)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.10  E-value=0.00018  Score=67.69  Aligned_cols=154  Identities=14%  Similarity=0.107  Sum_probs=103.6

Q ss_pred             EEEEEEccCCCEEEEEeCCC--cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCe
Q 010037          287 ILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (519)
Q Consensus       287 I~~l~fspdg~~LaSgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (519)
                      ...|.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.....                                     
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-------------------------------------   86 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-------------------------------------   86 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------------------------------------
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------------------------------------
Confidence            4789998 677777777776  899999999987655543210                                     


Q ss_pred             eEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEE
Q 010037          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF  444 (519)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l  444 (519)
                                              ...-.++...+...++.-.++.+.+||..+.+.+.++.....=..++  + ++..|
T Consensus        87 ------------------------~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L  139 (262)
T 3nol_A           87 ------------------------YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYL  139 (262)
T ss_dssp             ------------------------CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCE
T ss_pred             ------------------------cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEE
Confidence                                    00111222222233344468899999999999999998544323333  5 56666


Q ss_pred             EEEeCCCeEEEEEcCCCcEEeeccC---C---CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          445 ISGSIDGKVRIWEVRRCQVVDYTDI---R---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       445 ~sgs~Dg~V~iwd~~~~~~~~~~~~---~---~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +....+++|.++|..+.+++.....   .   ..++.+.|. +|+..+..-.++.|.+.|.+++++..
T Consensus       140 ~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~  206 (262)
T 3nol_A          140 IMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG  206 (262)
T ss_dssp             EECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE
T ss_pred             EEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE
Confidence            6655678899999999887743221   1   334567776 77655555568899999999998754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.05  E-value=0.00041  Score=65.21  Aligned_cols=174  Identities=11%  Similarity=0.095  Sum_probs=113.0

Q ss_pred             eeecCCCCeEEeeecCC--eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEecccCe
Q 010037          241 ATLKPGDHELTLGQRMR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEHE  317 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg--~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg-s~Dg~I~iWd~~~~~  317 (519)
                      +.|+ ++.+..+.+.+|  .|+++|...++....       +.- ..........++++.|..+ -.++.+.+||..+.+
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~-------~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ-------IEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE-------EEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE-------Eec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence            6777 666666666666  899999886654321       111 1222222223334444444 458899999998888


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      .+.++....                                                               .-..++  
T Consensus       119 ~~~ti~~~~---------------------------------------------------------------eG~glt--  133 (262)
T 3nol_A          119 QVRSFNYDG---------------------------------------------------------------EGWGLT--  133 (262)
T ss_dssp             EEEEEECSS---------------------------------------------------------------CCCCEE--
T ss_pred             EEEEEECCC---------------------------------------------------------------CceEEe--
Confidence            665553210                                                               112233  


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEecC---C---CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccC-
Q 010037          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---N---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-  469 (519)
Q Consensus       398 p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h---~---~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-  469 (519)
                      +++ .|+.+..++.|.++|..+.+.+..+.-   .   ..++.+.|.  ++.+++..-.+..|.+.|..+++++..... 
T Consensus       134 ~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~  211 (262)
T 3nol_A          134 HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLN  211 (262)
T ss_dssp             ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred             cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence            344 565555678899999999998888752   2   335567775  576666665788999999999998853322 


Q ss_pred             ------------CCceEEEEEeeCCCEEEEEec
Q 010037          470 ------------REIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       470 ------------~~~V~~v~~spdg~~l~sgs~  490 (519)
                                  ....+.|||+|+++.|.+.+.
T Consensus       212 ~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          212 GILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence                        235689999999988888774

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.04  E-value=0.00036  Score=65.71  Aligned_cols=153  Identities=10%  Similarity=-0.003  Sum_probs=105.6

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeE
Q 010037          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (519)
Q Consensus       287 I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  366 (519)
                      ...|.|+ ++.++.+.+.+|.|+++|+.+++.+..+ ....                                       
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~---------------------------------------   95 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN---------------------------------------   95 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT---------------------------------------
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC---------------------------------------
Confidence            4788887 4677788888999999999998865443 2110                                       


Q ss_pred             EEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEE
Q 010037          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS  446 (519)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~s  446 (519)
                                            ...-.++...+...++.-.++.+.+||..+.+.+.++.....-..++  + ++..|+.
T Consensus        96 ----------------------~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~-Dg~~L~v  150 (268)
T 3nok_A           96 ----------------------IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y-WNGKLVR  150 (268)
T ss_dssp             ----------------------CCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E-ETTEEEE
T ss_pred             ----------------------cceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c-CCCEEEE
Confidence                                  00112333333344445578999999999999999998544434444  4 5677777


Q ss_pred             EeCCCeEEEEEcCCCcEEeecc---CC---CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          447 GSIDGKVRIWEVRRCQVVDYTD---IR---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       447 gs~Dg~V~iwd~~~~~~~~~~~---~~---~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +..+++|.++|..+.+++....   ..   ..++.+.|. +|+..+..-.+..|.+.|.+++++..
T Consensus       151 SdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~  215 (268)
T 3nok_A          151 SDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG  215 (268)
T ss_dssp             ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE
T ss_pred             ECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE
Confidence            6778999999999988774322   22   235667776 77655545467899999999998764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.03  E-value=0.0041  Score=58.61  Aligned_cols=220  Identities=9%  Similarity=-0.012  Sum_probs=120.2

Q ss_pred             cccceeecCCCCeEE-eeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCCcEEEEecc
Q 010037          237 RHGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVI  314 (519)
Q Consensus       237 ~~~~~~~sp~g~~la-sgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~I~iWd~~  314 (519)
                      ....++++|++..|. +-...+.|.+++.......       ..+.........|++++++..|+ +-...+.|.++++.
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~  109 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD  109 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-------EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence            344689999765555 4455789999998643211       01112224678999999765554 44556789999986


Q ss_pred             cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee-ccCCCeeE
Q 010037          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLD  393 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~  393 (519)
                      ..............+..+.+.+.. ..++......            ....+..+...     +.....+. ........
T Consensus       110 g~~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~------------~~~~I~~~~~d-----g~~~~~~~~~~~~~P~g  171 (267)
T 1npe_A          110 GTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNR------------DNPKIETSHMD-----GTNRRILAQDNLGLPNG  171 (267)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCS------------SSCEEEEEETT-----SCCCEEEECTTCSCEEE
T ss_pred             CCCEEEEEECCCCCccEEEEeeCC-CEEEEEECCC------------CCcEEEEEecC-----CCCcEEEEECCCCCCcE
Confidence            433211111111222333333221 1222221110            01122221111     11111111 22345788


Q ss_pred             EEEcCCC-eE-EEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCC
Q 010037          394 LSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE  471 (519)
Q Consensus       394 l~~sp~~-~L-~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~  471 (519)
                      +++++++ .| ++-...+.|.++|+........+........|+..  ++.++++....+.|.++|..+++.+.......
T Consensus       172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~  249 (267)
T 1npe_A          172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK  249 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc
Confidence            9999976 44 55556789999999865544444433445666653  34445554466899999999988775443322


Q ss_pred             --ceEEEEEeeCCC
Q 010037          472 --IVSAVCYCPDGK  483 (519)
Q Consensus       472 --~V~~v~~spdg~  483 (519)
                        ....+++.|++.
T Consensus       250 ~~~p~gi~~~~~~~  263 (267)
T 1npe_A          250 QTRLYGITIALSQC  263 (267)
T ss_dssp             CCCCCCEEEECSCC
T ss_pred             ccccceeeecCccC
Confidence              467788888764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.02  E-value=0.00037  Score=65.58  Aligned_cols=173  Identities=9%  Similarity=0.019  Sum_probs=113.2

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~  320 (519)
                      +.|+ ++.+..+.+.+|.|+++|...++.....      +..+ ----.+++.. ++..+..-.++.+.+||..+.+.+.
T Consensus        60 L~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~------l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           60 LVFH-QGHFFESTGHQGTLRQLSLESAQPVWME------RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             EEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE------ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             EEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE------CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence            5665 3566677778889999999865543221      1111 1112345443 2344445578899999999888765


Q ss_pred             eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC
Q 010037          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (519)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  400 (519)
                      ++...                                                               ..-..++  +++
T Consensus       131 ti~~~---------------------------------------------------------------~eGwGLt--~Dg  145 (268)
T 3nok_A          131 TTRYS---------------------------------------------------------------GEGWGLC--YWN  145 (268)
T ss_dssp             EEECS---------------------------------------------------------------SCCCCEE--EET
T ss_pred             EEeCC---------------------------------------------------------------CceeEEe--cCC
Confidence            55321                                                               1112333  334


Q ss_pred             -eEEEEeCCCcEEEEECCCCeEEEEec---CC---CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccC----
Q 010037          401 -FLLSSSADKTVRLWQVGIDRCLRVFS---HN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI----  469 (519)
Q Consensus       401 -~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~---~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~----  469 (519)
                       .|+.+..++.|.++|..+.+.+..+.   +.   ..++.+.|.  ++.+++....+..|.+.|..+++++.....    
T Consensus       146 ~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~  223 (268)
T 3nok_A          146 GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALT  223 (268)
T ss_dssp             TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHH
T ss_pred             CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCc
Confidence             66666678999999999999988875   22   245777776  566666655788999999999998853321    


Q ss_pred             ----------CCceEEEEEeeCCCEEEEEe
Q 010037          470 ----------REIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       470 ----------~~~V~~v~~spdg~~l~sgs  489 (519)
                                ....+.|||+|+++.|++.+
T Consensus       224 ~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          224 RAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             HHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence                      24678999999887776655

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.01  E-value=0.00049  Score=66.82  Aligned_cols=182  Identities=14%  Similarity=0.057  Sum_probs=107.4

Q ss_pred             CCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc
Q 010037          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (519)
Q Consensus       296 g~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (519)
                      +..|..++.++.|..+|.. ++..............+....  ...++               .++.+..+..++.. . 
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~--~g~l~---------------vgt~~~~l~~~d~~-g-  166 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE--DGTIY---------------VGSNDNYLYAINPD-G-  166 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT--TSCEE---------------EECTTSEEEEECTT-S-
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC--CCEEE---------------EEcCCCEEEEECCC-C-
Confidence            4467778889999999987 665544443322222221111  11111               12223344444443 1 


Q ss_pred             ccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          376 LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       376 ~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                         +.+..+......+.++...+++.|+.++  +.|..|| .+++.+..+. ....+.++...+ ++. +..++.++.|.
T Consensus       167 ---~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~  238 (330)
T 3hxj_A          167 ---TEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLY  238 (330)
T ss_dssp             ---CEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEE
T ss_pred             ---CEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CCe-EEEEcCCCeEE
Confidence               2223333445567778887788666666  8899999 7776665554 445678888877 554 55567788888


Q ss_pred             EEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       455 iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .+|...............+..+...++| .|.+++.+|.|..+|..+..++.
T Consensus       239 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~g~~~~~  289 (330)
T 3hxj_A          239 AINPDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPDGTEKWN  289 (330)
T ss_dssp             EECTTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTTSCEEEE
T ss_pred             EECCCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCCCcEEEE
Confidence            8885433333444333344455665566 47788889899999974333433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.01  E-value=0.00081  Score=67.00  Aligned_cols=226  Identities=8%  Similarity=0.023  Sum_probs=120.8

Q ss_pred             CCeEEeeecCCeEEEeeCCccccccccccccc--eeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeec
Q 010037          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (519)
Q Consensus       247 g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~--~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~  324 (519)
                      +..+++++.++.|..+|...+...-.......  .+..+..+    ...  +..++.++.++.|..+|..+++.+.....
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~----~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP----TTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC----EEE--TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc----EEE--CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence            45777788899999999875543211100000  00111111    121  34677788899999999999987766554


Q ss_pred             cCCCCce-E-EEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeE
Q 010037          325 QDTDPSC-L-YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL  402 (519)
Q Consensus       325 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L  402 (519)
                      ....... + .+.......+.    ...     ..+..+.++.+..++.....    .+....  ......+... ++.|
T Consensus       217 ~~~~~~~~~~~~~~~~~~p~~----~~~-----~v~~~~~~g~l~~~d~~tG~----~~w~~~--~~~~~~~~~~-~~~l  280 (376)
T 3q7m_A          217 SQATGSTEIDRLSDVDTTPVV----VNG-----VVFALAYNGNLTALDLRSGQ----IMWKRE--LGSVNDFIVD-GNRI  280 (376)
T ss_dssp             CC-----------CCCCCCEE----ETT-----EEEEECTTSCEEEEETTTCC----EEEEEC--CCCEEEEEEE-TTEE
T ss_pred             ccCCCCcccccccccCCCcEE----ECC-----EEEEEecCcEEEEEECCCCc----EEeecc--CCCCCCceEE-CCEE
Confidence            3211000 0 00000000000    000     01111223333333332211    111111  1223334433 4488


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccC-CCceEEEEEe
Q 010037          403 LSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-REIVSAVCYC  479 (519)
Q Consensus       403 ~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V~~v~~s  479 (519)
                      +.++.++.|..+|..+++.+....  ....+.....   .+..|+.++.+|.|.++|..+++++..... ...+.+....
T Consensus       281 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~---~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~  357 (376)
T 3q7m_A          281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL---YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA  357 (376)
T ss_dssp             EEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE---ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE
Confidence            888899999999999999876664  1222333333   246788889999999999999998743322 2333221111


Q ss_pred             eCCCEEEEEecCCeEEEEE
Q 010037          480 PDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       480 pdg~~l~sgs~dg~v~iwd  498 (519)
                       .+..|++++.+|.|+.|+
T Consensus       358 -~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          358 -ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             -ETTEEEEEBTTSCEEEEE
T ss_pred             -ECCEEEEEeCCCEEEEEe
Confidence             245788899999999987

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.95  E-value=0.014  Score=64.37  Aligned_cols=245  Identities=10%  Similarity=0.016  Sum_probs=140.5

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      +.++...+++.+. .|+..+-|.+|+..................-....|.++...++|.+.+ |+.+ -|.+|+..++.
T Consensus       217 i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~  293 (795)
T 4a2l_A          217 IQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDS  293 (795)
T ss_dssp             EEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTE
T ss_pred             eEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCe
Confidence            4445556666544 4544444778886543221110000000001235799999998887544 5555 48889987765


Q ss_pred             eeceeeccCC-----CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee-------
Q 010037          318 RLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-------  385 (519)
Q Consensus       318 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-------  385 (519)
                      ..........     ......+..+....+....               ..+.+..++.....     +..+.       
T Consensus       294 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt---------------~~~Gl~~~~~~~~~-----~~~~~~~~~~~~  353 (795)
T 4a2l_A          294 FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGT---------------YFGGLNYYHPIRNR-----FKNIRNIPYKNS  353 (795)
T ss_dssp             EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEE---------------SSSCEEEECGGGGS-----SEEECCCTTSSS
T ss_pred             EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEE---------------CCCCeEEeCCCccc-----ceEEcCCCCCCC
Confidence            4322111100     0111122222222222211               11122223221110     11111       


Q ss_pred             ccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec---------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      .....|.++...++|.|..|+.++-|..|+..+++......         ....|.++...+ ++++|..|+.++-|.+|
T Consensus       354 l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~  432 (795)
T 4a2l_A          354 LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSIL  432 (795)
T ss_dssp             CSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred             CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEE
Confidence            12456999999998888889998889999988876544321         135799999987 77756677877789999


Q ss_pred             EcCCCcEEeecc-----CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeecc
Q 010037          457 EVRRCQVVDYTD-----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       457 d~~~~~~~~~~~-----~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~  508 (519)
                      |..+++...+..     ....|.++...++|.+ .+|+.+ -+.+||..+++...+.
T Consensus       433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~~-Gl~~~~~~~~~~~~~~  487 (795)
T 4a2l_A          433 HRNSGQVENFNQRNSQLVNENVYAILPDGEGNL-WLGTLS-ALVRFNPEQRSFTTIE  487 (795)
T ss_dssp             ETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE-EEEESS-CEEEEETTTTEEEECC
T ss_pred             eCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE-EEEecC-ceeEEeCCCCeEEEcc
Confidence            999887665432     3457899999888874 455554 5888999887765543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.91  E-value=0.0015  Score=60.82  Aligned_cols=156  Identities=12%  Similarity=0.039  Sum_probs=104.4

Q ss_pred             CCEEEEEEccCCCEEEEEeCCC--cEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCC
Q 010037          285 GSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (519)
Q Consensus       285 ~~I~~l~fspdg~~LaSgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  362 (519)
                      .-...+.|++ +.++.+.+.+|  .|+.+|+.+++.+..+......                                  
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~----------------------------------   65 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY----------------------------------   65 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC----------------------------------
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc----------------------------------
Confidence            3467899986 66667777754  8999999999876655432110                                  


Q ss_pred             CeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCC
Q 010037          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN  442 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~  442 (519)
                                                 .--.++...+......-.++.+.+||..+.+.+.++.....=..++  + ++.
T Consensus        66 ---------------------------fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~  115 (243)
T 3mbr_X           66 ---------------------------FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDS  115 (243)
T ss_dssp             ---------------------------CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSS
T ss_pred             ---------------------------ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCC
Confidence                                       0011222222233445578899999999999999998554434444  5 555


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEeeccC---C---CceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          443 YFISGSIDGKVRIWEVRRCQVVDYTDI---R---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       443 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~---~---~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .|+.+..+++|.++|..+.+++.....   .   ..++-+.|. +|+..+..-.+..|.+.|.+++++..
T Consensus       116 ~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~  184 (243)
T 3mbr_X          116 HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA  184 (243)
T ss_dssp             CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred             EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE
Confidence            555556688999999999887743222   1   245566665 77655555467899999999998764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.84  E-value=0.0034  Score=59.03  Aligned_cols=202  Identities=11%  Similarity=0.112  Sum_probs=124.2

Q ss_pred             ecccceeecCCCCeEE-eeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037          236 DRHGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (519)
Q Consensus       236 ~~~~~~~~sp~g~~la-sgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~  314 (519)
                      +....+++.|++..|+ +...++.|...+.. +. ....+    .+.+ ....-.|++.+++.++++.-.++.+.++++.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i----~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTI----PLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEE----ECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEE----ecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3455689999876554 57778888888876 22 12111    1122 2457788999998877776667788888875


Q ss_pred             cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (519)
                      ....+.......                                                    .++. ...++...-.|
T Consensus       100 ~~~~i~~~~~~~----------------------------------------------------~~~~-~~~~N~g~EGL  126 (255)
T 3qqz_A          100 PNSEVKILKKIK----------------------------------------------------IPLQ-ESPTNCGFEGL  126 (255)
T ss_dssp             TTCCEEEEEEEE----------------------------------------------------CCCS-SCCCSSCCEEE
T ss_pred             CCCeeeeeeeec----------------------------------------------------cccc-cccccCCcceE
Confidence            543211100000                                                    0000 01235567899


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECC---CCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          395 SWSKNG-FLLSSSADKTVRLWQVG---IDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~V~lWdl~---~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      +|+|.+ .|+++.......||.+.   ....+..+.        +-..+..++++|..+.+++.......|.++|.... 
T Consensus       127 A~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-  205 (255)
T 3qqz_A          127 AYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-  205 (255)
T ss_dssp             EEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-
T ss_pred             EEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-
Confidence            999988 77777665555666553   111222221        23457899999977888888888899999997754 


Q ss_pred             EEeeccCC----------CceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          463 VVDYTDIR----------EIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       463 ~~~~~~~~----------~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      ++......          .....|+|.++|++.++ +.-+.++.|.-
T Consensus       206 ~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          206 VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            54322111          25689999999985555 66666666643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.83  E-value=0.0091  Score=57.60  Aligned_cols=224  Identities=13%  Similarity=0.062  Sum_probs=120.8

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC-C-cEEEEecccCe
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-G-TVRVWKVIEHE  317 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D-g-~I~iWd~~~~~  317 (519)
                      .++++|++.++++-...++|..++.......         +..-...+..|++.++|+++++.... + .|..++..+++
T Consensus        36 gia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---------~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           36 NLASAPDGTIFVTNHEVGEIVSITPDGNQQI---------HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCEEE---------EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             eEEECCCCCEEEEeCCCCeEEEECCCCceEE---------EEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            4789999987777768899999987642211         11123468899999999966655433 2 36666666665


Q ss_pred             eeceeeccCCC-CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccc--ccc--cccee--EeeccCCC
Q 010037          318 RLDGFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF--RLL--EKPLH--EFQGHSSE  390 (519)
Q Consensus       318 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~--~~~~~--~~~~h~~~  390 (519)
                      ........... ...+..  .....++....              ..+.++.++....  .+.  ...+.  .....-..
T Consensus       107 ~~~~~~~~~~~~~~g~~~--~~~~~~~v~d~--------------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITP--LSDTQYLTADS--------------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEEEEECTTCSCEEEEEE--SSSSEEEEEET--------------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEEEeCCCccccCcccc--cCCCcEEEEEC--------------CCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            43222221110 011111  11111111111              1222333322110  000  00000  00011123


Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeE--EEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       391 V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~-~~~--~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      ...|  ++++  ++++-...+.|..+++.. ++.  ...+........+++++ +++++++....+.|.++|.. ++...
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~  246 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTI  246 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEE
Confidence            4445  6766  445556678999999874 321  12222223456789999 88888877778899999986 55432


Q ss_pred             ---eccCCCceEEEEEe---eCCCEEEEEecCC
Q 010037          466 ---YTDIREIVSAVCYC---PDGKGGIVGTMTG  492 (519)
Q Consensus       466 ---~~~~~~~V~~v~~s---pdg~~l~sgs~dg  492 (519)
                         ....-...++++|.   |+++.|++++..+
T Consensus       247 ~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          247 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence               22223568999998   8988877776544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.77  E-value=0.0033  Score=61.17  Aligned_cols=108  Identities=15%  Similarity=0.089  Sum_probs=69.3

Q ss_pred             CeeEEEEcCCC-eEEEE-eCCCcEEEEECCCCe--EEEEe-cCCCcEEEEEEeeCCCCEEEEEeC----------CCeEE
Q 010037          390 EVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDR--CLRVF-SHNNYVTSVAFNPVDDNYFISGSI----------DGKVR  454 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sg-s~Dg~V~lWdl~~~~--~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~----------Dg~V~  454 (519)
                      ....|+++|++ .|+.+ +..+.|.+|++....  ....+ .... ...+++.+ +++++++...          .+.|.
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~  263 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGI  263 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEE
Confidence            34678999998 55554 566899999987521  11122 1233 78899999 8887776654          46788


Q ss_pred             EEEcCCCcEEe-eccC----CCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          455 IWEVRRCQVVD-YTDI----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       455 iwd~~~~~~~~-~~~~----~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .+|.. ++.+. +...    -..++.+++ .+|+++++....+.|.++++..
T Consensus       264 ~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          264 KFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            88875 55543 3222    234666766 5666666656678899998864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.74  E-value=0.00069  Score=71.03  Aligned_cols=199  Identities=11%  Similarity=0.066  Sum_probs=117.8

Q ss_pred             CCCEEEEEeC-CCcEEEEecccCeeeceeeccC-CCCceEEEee-cCCCCeEEeecc-----CCceeeeeeeccCCCeeE
Q 010037          295 DGQYLASGGE-DGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTI-NHLSQLIPIDVD-----KEKIDKTKSLRKSSDLTC  366 (519)
Q Consensus       295 dg~~LaSgs~-Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~  366 (519)
                      ||++|+.... +..|.+-|+.+.++...+.++. ..+..+.+.. .....+++..-.     ....  ...........+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~--~l~~~~~~~~~v  177 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT--NMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS--STTCGGGEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc--ccccccccCceE
Confidence            7888777655 5569999999999888665543 2234444422 222222222100     0000  000011222233


Q ss_pred             EEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCC-------------------------------------
Q 010037          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD-------------------------------------  408 (519)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D-------------------------------------  408 (519)
                      .+++......    ...+.-- +....++.+|+| ++++++.+                                     
T Consensus       178 tvID~~t~~v----~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          178 TAVDADKWEV----AWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEETTTTEE----EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             EEEECCCCeE----EEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            3344332211    1221111 123456677777 55555533                                     


Q ss_pred             -CcEEEEECCC--CeE-EEEecCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCc------------EEeeccCCC
Q 010037          409 -KTVRLWQVGI--DRC-LRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQ------------VVDYTDIRE  471 (519)
Q Consensus       409 -g~V~lWdl~~--~~~-~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~------------~~~~~~~~~  471 (519)
                       +.|.|.|..+  ++. +..+.-.....++.++| |++++++++ .+.+|.++|+.+.+            ++.......
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred             ECcEEEEeCcccCCceeEEEEecCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence             2478888887  544 55665455667899999 888777665 57899999999653            344445566


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      ....++|+|+|...++.-.|+.|.+||+.+
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            788999999995555667799999999976

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.73  E-value=0.0034  Score=66.63  Aligned_cols=104  Identities=11%  Similarity=0.033  Sum_probs=73.4

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecCCC--------------cE--------------------------EEEEEeeCC
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNN--------------YV--------------------------TSVAFNPVD  440 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~--------------~V--------------------------~~v~fsp~d  440 (519)
                      .++.++.+|.+.++|..+++.+..+....              ++                          ..++++| +
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~  396 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-E  396 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-T
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-C
Confidence            36678889999999999999887664211              11                          2357788 5


Q ss_pred             CCEEEEEe-------------------------------------CCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC
Q 010037          441 DNYFISGS-------------------------------------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (519)
Q Consensus       441 ~~~l~sgs-------------------------------------~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~  483 (519)
                      ..+|++..                                     .+|.|..||+.+++++-.......+....+...+.
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg  476 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG  476 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTT
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCC
Confidence            55555543                                     35789999999998874333333333334445567


Q ss_pred             EEEEEecCCeEEEEECCCCeee
Q 010037          484 GGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       484 ~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      .+++++.||.|+.||.++++++
T Consensus       477 ~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          477 LVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEEEcCCCeEEEEECCCCCEE
Confidence            7888999999999999988754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.69  E-value=0.018  Score=63.62  Aligned_cols=239  Identities=9%  Similarity=0.059  Sum_probs=136.6

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      .+.++...++|.+. .|+..| |.+|+..................-....|.+|...++|. |..|+.++-|..|+..+.
T Consensus       264 ~i~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~  340 (795)
T 4a2l_A          264 YIRSLAMDSQNRLW-IGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRN  340 (795)
T ss_dssp             BEEEEEECTTSCEE-EEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGG
T ss_pred             eEEEEEEcCCCCEE-EEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcc
Confidence            34556667776644 444454 777876543321100000000011346799999999887 556777777889987655


Q ss_pred             eeeceeeccC-----CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee------
Q 010037          317 ERLDGFDVQD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ------  385 (519)
Q Consensus       317 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------  385 (519)
                      ... .+....     .......+..+....+..               ++..+.+..++.....     +..+.      
T Consensus       341 ~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWi---------------Gt~~~Gl~~~~~~~~~-----~~~~~~~~~~~  399 (795)
T 4a2l_A          341 RFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWI---------------GTNDGGLNLYNPITQR-----FTSYTLQEDES  399 (795)
T ss_dssp             SSE-EECCCTTSSSCSCSSEEEEEECTTSCEEE---------------EESSSCEEEECTTTCC-----EEEECCC----
T ss_pred             cce-EEcCCCCCCCCCCCeeEEEEECCCCCEEE---------------EECCCCeEEEcCCCCc-----EEEEecCCCCc
Confidence            422 111100     001111222222222221               1112223333332111     11111      


Q ss_pred             ---ccCCCeeEEEEcCCCe-EEEEeCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          386 ---GHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       386 ---~h~~~V~~l~~sp~~~-L~sgs~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                         .....|.++...+++. |..|+.++-|.+||..+++......     ....|.++...+ ++++.+.. . +-|.+|
T Consensus       400 ~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt-~-~Gl~~~  476 (795)
T 4a2l_A          400 ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGT-L-SALVRF  476 (795)
T ss_dssp             --CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEE-S-SCEEEE
T ss_pred             ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEe-c-CceeEE
Confidence               1245789999988886 9999998889999998877544332     346799999888 67755544 4 458899


Q ss_pred             EcCCCcEEeecc-------CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          457 EVRRCQVVDYTD-------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       457 d~~~~~~~~~~~-------~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      |..+++...+..       ....|.++...++|++. +|+. +-+..||..++++
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~-~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          477 NPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW-IGGE-EGLSVFKQEGLDI  529 (795)
T ss_dssp             ETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE-EEES-SCEEEEEEETTEE
T ss_pred             eCCCCeEEEccccccccccCCceEEEEEECCCCCEE-EEeC-CceEEEeCCCCeE
Confidence            998876654322       23578999999998754 4555 4588888877665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.67  E-value=0.0042  Score=68.20  Aligned_cols=243  Identities=7%  Similarity=0.006  Sum_probs=116.4

Q ss_pred             cceeec-CCCCeEEeeec-----CCeEEEeeCCcc-ccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC-----C
Q 010037          239 GSATLK-PGDHELTLGQR-----MRRVRVHPVKKQ-SRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-----G  306 (519)
Q Consensus       239 ~~~~~s-p~g~~lasgs~-----dg~I~vw~~~~~-~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D-----g  306 (519)
                      ...+|+ |||++||.+..     ..+|+++++..+ .. +.     ..+..   ....+.|+|||+.|+....|     .
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~-----~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IA-----DKVSG---TNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CC-----CCEEE---ECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CC-----ccccC---ceeeEEEecCCCEEEEEEECCCCCCC
Confidence            346899 99999886433     235999999865 31 11     11211   12357899999988777665     2


Q ss_pred             cEEEEecccCeeec--eeeccCCC-CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccc-ee
Q 010037          307 TVRVWKVIEHERLD--GFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP-LH  382 (519)
Q Consensus       307 ~I~iWd~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~  382 (519)
                      .|.++++.++....  .+...... .....++++....++...             ......+.+++.....  ... +.
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~-------------~~~~~~l~~~d~~~~~--~~~~~~  312 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ-------------SPETAEVHLLDLRKGN--AHNTLE  312 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE-------------CSSCEEEEEEESSSCT--TCCCEE
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec-------------CCCCceEEEEECCCCC--CCceeE
Confidence            57778876654221  11111111 112233333222222111             1112333333332210  011 01


Q ss_pred             Ee-eccCCCeeEEEEcCCCeE-EEEeCC----CcEEEEECCC-CeEEE-EecCCCcEEEEEEeeCCCCEEEEEeCCCe--
Q 010037          383 EF-QGHSSEVLDLSWSKNGFL-LSSSAD----KTVRLWQVGI-DRCLR-VFSHNNYVTSVAFNPVDDNYFISGSIDGK--  452 (519)
Q Consensus       383 ~~-~~h~~~V~~l~~sp~~~L-~sgs~D----g~V~lWdl~~-~~~~~-~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~--  452 (519)
                      .+ .........+.|+..+.| +.+..+    ..|..+++.+ +.... .+.+...+.--.+.+..+.++++...++.  
T Consensus       313 ~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~  392 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTR  392 (751)
T ss_dssp             ESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEE
T ss_pred             EeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEE
Confidence            12 223345556666555544 444333    3566777765 33333 45554433323344424456666777775  


Q ss_pred             EEEEEc-------CCCc-EEeecc-CCCceEEEEE----eeCCCE-EEEEecC---CeEEEEECCCCeee
Q 010037          453 VRIWEV-------RRCQ-VVDYTD-IREIVSAVCY----CPDGKG-GIVGTMT---GNCRFYDIKGMQIF  505 (519)
Q Consensus       453 V~iwd~-------~~~~-~~~~~~-~~~~V~~v~~----spdg~~-l~sgs~d---g~v~iwdl~~~~l~  505 (519)
                      |.++++       .+++ ...+.- ....+..+.+    ++++.. +++.+..   +.+..+|+.+++..
T Consensus       393 l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~  462 (751)
T 2xe4_A          393 IWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT  462 (751)
T ss_dssp             EEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred             EEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence            555665       3444 332211 1122333333    346654 3443332   45778888776543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.60  E-value=0.006  Score=65.87  Aligned_cols=248  Identities=11%  Similarity=0.077  Sum_probs=128.7

Q ss_pred             ceeecC-CCCeEEeeecCC-----------eEEEeeCCcccccccccccccee-ecCCCCEEEEEEccCCCEEEEEeC-C
Q 010037          240 SATLKP-GDHELTLGQRMR-----------RVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGE-D  305 (519)
Q Consensus       240 ~~~~sp-~g~~lasgs~dg-----------~I~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~LaSgs~-D  305 (519)
                      .+++.| ++++++.|+.+.           .+.+||.........     ..+ ..+.....++++..+++.++.||. +
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-----~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~  264 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-----TVTVTKHDMFCPGISMDGNGQIVVTGGNDA  264 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-----EEEECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-----cccCCCCCCccccccCCCCCCEEEeCCCCC
Confidence            356777 888888876543           578888875543211     112 123333445778889999999984 4


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc--ccccc----c
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV--FRLLE----K  379 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~----~  379 (519)
                      ..+.+||..+++-...-..+.......... .....++.+.-....        ......+.++++..  |....    .
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~-~~dg~iyv~GG~~~~--------~~~~~~~e~yd~~t~~W~~~~~~~~~  335 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSAT-MSDGRVFTIGGSWSG--------GVFEKNGEVYSPSSKTWTSLPNAKVN  335 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEE-CTTSCEEEECCCCCS--------SSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred             CceEEecCcCCceeECCCCCccccccceEE-ecCCeEEEEeCcccC--------CcccccceEeCCCCCcceeCCCcccc
Confidence            589999998765332211111111111111 111222222210000        00112344444432  22110    1


Q ss_pred             ceeEeeccCCCeeEEEEcCCC-eEEEEeC---------CCcEEEEECCCCeEEEEec-C---------CCcEEEEEEeeC
Q 010037          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSA---------DKTVRLWQVGIDRCLRVFS-H---------NNYVTSVAFNPV  439 (519)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~~-~L~sgs~---------Dg~V~lWdl~~~~~~~~~~-h---------~~~V~~v~fsp~  439 (519)
                      ++... .+.     ..+..++ .++.++.         ...+..||..+........ +         ...-.++.|...
T Consensus       336 p~~~~-~~~-----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~  409 (656)
T 1k3i_A          336 PMLTA-DKQ-----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV  409 (656)
T ss_dssp             GGCCC-CTT-----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred             ccccc-ccc-----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC
Confidence            11110 010     1112233 3344433         3457889998876554433 1         112355666554


Q ss_pred             CCCEEEEEeCCC-----------eEEEEEcCCCcEEeec----cCCCceEEEEEeeCCCEEEEEecC-----------Ce
Q 010037          440 DDNYFISGSIDG-----------KVRIWEVRRCQVVDYT----DIREIVSAVCYCPDGKGGIVGTMT-----------GN  493 (519)
Q Consensus       440 d~~~l~sgs~Dg-----------~V~iwd~~~~~~~~~~----~~~~~V~~v~~spdg~~l~sgs~d-----------g~  493 (519)
                      ++.+++.|+.++           .|.+||..+.+-....    .....-.+++..|+|+++++|+.+           ..
T Consensus       410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~  489 (656)
T 1k3i_A          410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT  489 (656)
T ss_dssp             TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred             CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence            778888887543           6888888876544332    111222345677899999999864           46


Q ss_pred             EEEEECCCCeeeec
Q 010037          494 CRFYDIKGMQIFDL  507 (519)
Q Consensus       494 v~iwdl~~~~l~~~  507 (519)
                      +.+||..+++-..+
T Consensus       490 v~~ydp~t~~W~~~  503 (656)
T 1k3i_A          490 PEIYVPEQDTFYKQ  503 (656)
T ss_dssp             CEEEEGGGTEEEEC
T ss_pred             eEEEcCCCCceeec
Confidence            89999988765443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.59  E-value=0.0066  Score=64.65  Aligned_cols=57  Identities=14%  Similarity=0.029  Sum_probs=40.1

Q ss_pred             CCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       449 ~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      .+|.|.-||+.+++++-......++..-.....|.++++++.||.++.||.++++++
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence            347899999999988743322222222223346778888999999999999998753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.56  E-value=0.0028  Score=68.63  Aligned_cols=56  Identities=13%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       450 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +|.|..||+.+++++-.......+....+...|.++++++.||.++.||.++++++
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence            48899999999998844334444444556667889999999999999999988764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.55  E-value=0.0051  Score=65.36  Aligned_cols=80  Identities=9%  Similarity=0.074  Sum_probs=55.2

Q ss_pred             CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE--EEEEeeCCCE
Q 010037          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS--AVCYCPDGKG  484 (519)
Q Consensus       407 ~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~--~v~~spdg~~  484 (519)
                      .++.|..||+.+++.+-...+...+..-.... .+.+++.|+.||.|+.||.++++++-.......+.  -+.|..+|+.
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            36889999999999887766443333322333 46778889999999999999999884333333332  3677788874


Q ss_pred             EEE
Q 010037          485 GIV  487 (519)
Q Consensus       485 l~s  487 (519)
                      .++
T Consensus       543 Yv~  545 (582)
T 1flg_A          543 YLG  545 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.52  E-value=0.043  Score=60.36  Aligned_cols=247  Identities=10%  Similarity=0.010  Sum_probs=133.4

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccc-------cccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSL-------YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~-------~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~i  310 (519)
                      +.++...++|. |..|+..+-|.+++...........       ............|.+|...++|. |..|+.++-|..
T Consensus       260 i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~  337 (781)
T 3v9f_A          260 IFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINF  337 (781)
T ss_dssp             EEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEE
T ss_pred             EEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEE
Confidence            44555666665 4456664557777765433211000       00000012346799999998887 556777777888


Q ss_pred             EecccCeeeceeecc-----C---CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccccccccee
Q 010037          311 WKVIEHERLDGFDVQ-----D---TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (519)
                      ++..+..... +...     .   .......+.......+.....               ...+..++........- ..
T Consensus       338 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~---------------~~Gl~~~~~~~~~~~~~-~~  400 (781)
T 3v9f_A          338 ISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTD---------------GGGINVFENGKRVAIYN-KE  400 (781)
T ss_dssp             ECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSCEEEEEB---------------SSCEEEEETTEEEEECC---
T ss_pred             eCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCCEEEEeC---------------CCcEEEEECCCCeEEEc-cC
Confidence            8876544221 1110     0   001111122222222221111               11122222221110000 00


Q ss_pred             EeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037          383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (519)
Q Consensus       383 ~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~  459 (519)
                      ........|.++...+++.|..|+.++-|..+|..+++......   ....|.++...+ ++. |..|+. +-|.+||..
T Consensus       401 ~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~  477 (781)
T 3v9f_A          401 NRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLA  477 (781)
T ss_dssp             ---CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESS
T ss_pred             CCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCC
Confidence            00123467999998888877778887889999988776543321   346799998887 565 444555 568999988


Q ss_pred             CCcEEeeccC------CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          460 RCQVVDYTDI------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       460 ~~~~~~~~~~------~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      +++.......      ...|.+++..++|. |.+|+..+-+..||..++++..+
T Consensus       478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~  530 (781)
T 3v9f_A          478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKF  530 (781)
T ss_dssp             SSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEE
T ss_pred             CCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEc
Confidence            7765433221      36789999999887 45566544477799887766544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.49  E-value=0.006  Score=66.03  Aligned_cols=82  Identities=6%  Similarity=0.123  Sum_probs=58.0

Q ss_pred             CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCce--EEEEEeeCCCE
Q 010037          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGKG  484 (519)
Q Consensus       407 ~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V--~~v~~spdg~~  484 (519)
                      .++.|..||+.+++.+-.+.+...+....+.. .+.+++.|+.|+.|+.||.++++++........+  .-+.+..+|+.
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccceEEEEeCCCCcEEEEccCCCCCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence            45889999999999987776555555455555 6788999999999999999999988432222222  33455678864


Q ss_pred             -EEEEe
Q 010037          485 -GIVGT  489 (519)
Q Consensus       485 -l~sgs  489 (519)
                       +++++
T Consensus       515 yva~~~  520 (668)
T 1kv9_A          515 YVAIMA  520 (668)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence             44443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.48  E-value=0.0025  Score=59.30  Aligned_cols=116  Identities=10%  Similarity=-0.041  Sum_probs=83.2

Q ss_pred             CCeeEEEEcCCCeEEEEeCC--CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee
Q 010037          389 SEVLDLSWSKNGFLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~sgs~D--g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~  466 (519)
                      .....+.|+++.++.+.+.+  ..|+.+|+.+++.+....-..........+.++.++...-.++.+.+||..+.+++..
T Consensus        21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            45778999873255566664  4899999999999998874444444434442455555666789999999999998854


Q ss_pred             ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       467 ~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ......-.  .+.+|++.|+++..++.|.++|..+.++..
T Consensus       101 i~~~~~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~  138 (243)
T 3mbr_X          101 FRYPGEGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVG  138 (243)
T ss_dssp             EECSSCCC--EEEECSSCEEEECSSSEEEEECTTTCCEEE
T ss_pred             EeCCCCce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEE
Confidence            44433333  444688888888888999999999876643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.43  E-value=0.01  Score=63.02  Aligned_cols=56  Identities=20%  Similarity=0.105  Sum_probs=39.9

Q ss_pred             CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       450 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +|.|..||+.+++++-.......+..-.....+.++++|+.||.++.||.++++++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence            68899999999998733222223322223335678888999999999999988753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.40  E-value=0.13  Score=51.33  Aligned_cols=233  Identities=7%  Similarity=-0.059  Sum_probs=125.7

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCee
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~  318 (519)
                      |.+..+. .+|+.+. ...|+..++......        .+......+..++|.+.+..| ++-...+.|..+++.....
T Consensus        81 C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~--------~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  150 (386)
T 3v65_B           81 CKALGPE-PVLLFAN-RIDIRQVLPHRSEYT--------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  150 (386)
T ss_dssp             EEECSSC-CEEEEEC-BSCEEEECTTSCCCE--------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred             ECCcccc-ceeEeec-CccceeeccCCCcEE--------EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence            3344443 3444433 356777776543211        122233457899999755544 4555678899999876543


Q ss_pred             eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE-eeccCCCeeEEEEc
Q 010037          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLSWS  397 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s  397 (519)
                      ...+......+..+++.+.. ..++.......              .+.+.+..     +..... +.........|++.
T Consensus       151 ~~~~~~~~~~p~glavd~~~-g~lY~~d~~~~--------------~I~~~~~d-----g~~~~~l~~~~l~~P~giavd  210 (386)
T 3v65_B          151 EEVVSTGLESPGGLAVDWVH-DKLYWTDSGTS--------------RIEVANLD-----GAHRKVLLWQSLEKPRAIALH  210 (386)
T ss_dssp             EEEECSSCSCCCCEEEETTT-TEEEEEETTTT--------------EEEECBTT-----SCSCEEEECSSCSCEEEEEEE
T ss_pred             EEEEeCCCCCccEEEEEeCC-CeEEEEcCCCC--------------eEEEEeCC-----CCceEEeecCCCCCCcEEEEE
Confidence            33222222233334433222 12222222111              12222111     111111 12233567899999


Q ss_pred             CCC-eEE-EEeCC-CcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCc
Q 010037          398 KNG-FLL-SSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI  472 (519)
Q Consensus       398 p~~-~L~-sgs~D-g~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~  472 (519)
                      |.+ .|+ +-... +.|..+++.......... .-...+.|+|+|..+.++++-+..+.|..+|+....... .......
T Consensus       211 p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~  290 (386)
T 3v65_B          211 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH  290 (386)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSS
T ss_pred             cCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCC
Confidence            865 444 44444 678888887554333332 344578999998455555555667889999987543332 2222345


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ...+++ ..+.++++-...+.|..++..+++
T Consensus       291 P~giav-~~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          291 PFAITV-FEDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             EEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence            677888 455566666677889999865554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.37  E-value=0.069  Score=58.68  Aligned_cols=244  Identities=12%  Similarity=0.107  Sum_probs=135.1

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCcccccccccccc--ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEeccc
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      +.++...++|. |-.|+.++-|..++..............  ..-......|.++...++|. |..|+.++-|.+|+..+
T Consensus       315 v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~  392 (781)
T 3v9f_A          315 ARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGK  392 (781)
T ss_dssp             EEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTE
T ss_pred             EEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCC
Confidence            44455666664 5567766667777765432111100000  00011235699999988887 45566666688898765


Q ss_pred             CeeeceeeccC-CCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe---eccCCCe
Q 010037          316 HERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF---QGHSSEV  391 (519)
Q Consensus       316 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~V  391 (519)
                      +.......... .......+.......+..               ++....+..++.....     +..+   ......|
T Consensus       393 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi---------------gt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~v  452 (781)
T 3v9f_A          393 RVAIYNKENRELLSNSVLCSLKDSEGNLWF---------------GTYLGNISYYNTRLKK-----FQIIELEKNELLDV  452 (781)
T ss_dssp             EEEECC-----CCCSBEEEEEECTTSCEEE---------------EETTEEEEEECSSSCE-----EEECCSTTTCCCCE
T ss_pred             CeEEEccCCCCCCCcceEEEEECCCCCEEE---------------EeccCCEEEEcCCCCc-----EEEeccCCCCCCeE
Confidence            54322110000 001111111121122211               1112233334332211     1111   1134678


Q ss_pred             eEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-C-----CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          392 LDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-H-----NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       392 ~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h-----~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      .++...+++.|..|+. +-|..||..+++...... .     ...|.++...+ ++.+.+ |+.++-|..||..+++...
T Consensus       453 ~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~  529 (781)
T 3v9f_A          453 RVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRK  529 (781)
T ss_dssp             EEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEEE
T ss_pred             EEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEE
Confidence            9999988887777777 568999988776544332 1     46799999888 676555 4543447789988776655


Q ss_pred             ecc----CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          466 YTD----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       466 ~~~----~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      +..    ....|.++...++|.+ ..|+.+|.+..||..++++..+
T Consensus       530 ~~~~~~l~~~~i~~i~~d~~g~l-Wi~T~~Glv~~~d~~~~~~~~~  574 (781)
T 3v9f_A          530 FNQYEGFCSNTINQIYRSSKGQM-WLATGEGLVCFPSARNFDYQVF  574 (781)
T ss_dssp             ECTTTTCSCSCEEEEEECTTSCE-EEEETTEEEEESCTTTCCCEEE
T ss_pred             ccCCCCCCCCeeEEEEECCCCCE-EEEECCCceEEECCCCCcEEEc
Confidence            432    2456889999888874 5555577658899887765543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.37  E-value=0.08  Score=51.82  Aligned_cols=111  Identities=15%  Similarity=0.274  Sum_probs=81.7

Q ss_pred             CCeeEEEE--cCC-C--eEEEEeCCCcEEEEEC-------CCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          389 SEVLDLSW--SKN-G--FLLSSSADKTVRLWQV-------GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       389 ~~V~~l~~--sp~-~--~L~sgs~Dg~V~lWdl-------~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      ..+..+++  +|. +  +++....++.+..|++       .+.+.++.|.....+-.++..+ ....|+.+-.+.-|..+
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~  206 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKF  206 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEE
Confidence            55666777  664 4  6888889999999998       2446778888888899999998 77888899988777777


Q ss_pred             EcC-----CCcEEeecc---CCCceEEEEE--eeCCC-EEEEEe-cCCeEEEEECC
Q 010037          457 EVR-----RCQVVDYTD---IREIVSAVCY--CPDGK-GGIVGT-MTGNCRFYDIK  500 (519)
Q Consensus       457 d~~-----~~~~~~~~~---~~~~V~~v~~--spdg~-~l~sgs-~dg~v~iwdl~  500 (519)
                      +.+     +.+++....   ....+..|++  .++|+ +|++++ .++...+||..
T Consensus       207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            755     345554332   2346888887  45666 566666 56789999996

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.36  E-value=0.011  Score=57.43  Aligned_cols=110  Identities=11%  Similarity=0.091  Sum_probs=80.2

Q ss_pred             eeEEEE---cCCC-eEEEEe-------------CCCcEEEEECC---CCeEEEEecC-------------C-CcEEEEEE
Q 010037          391 VLDLSW---SKNG-FLLSSS-------------ADKTVRLWQVG---IDRCLRVFSH-------------N-NYVTSVAF  436 (519)
Q Consensus       391 V~~l~~---sp~~-~L~sgs-------------~Dg~V~lWdl~---~~~~~~~~~h-------------~-~~V~~v~f  436 (519)
                      +..|.|   .|++ ++++..             .+..|..||+.   +++.+.....             . ...+.++.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            467888   5778 444332             26779999999   7776655531             1 25889999


Q ss_pred             eeCCCCEEEEEeCC-CeEEEEEcCCCcEEeec------cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          437 NPVDDNYFISGSID-GKVRIWEVRRCQVVDYT------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       437 sp~d~~~l~sgs~D-g~V~iwd~~~~~~~~~~------~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                      .+ +|+..++++.. +.|...+........+.      ......+.|+++|+|+.|++....|.+..+|+..
T Consensus       145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            99 99999999988 88888877755444221      1122367999999999999987799999999874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.32  E-value=0.0036  Score=68.74  Aligned_cols=108  Identities=12%  Similarity=0.083  Sum_probs=66.6

Q ss_pred             eEEEEcCCC-eEEEEeCC-----CcEEEEECCCCeE--EEEe--cCCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEc
Q 010037          392 LDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRC--LRVF--SHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV  458 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs~D-----g~V~lWdl~~~~~--~~~~--~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~  458 (519)
                      ..++|+|++ .|+....|     ..|.++++.++..  ...+  ........+.|+| ++++|+..+.   ...|+++|+
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~  302 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDL  302 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEES
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEEC
Confidence            467899998 56555544     3688889887642  2333  3445677899999 8988876653   346888999


Q ss_pred             CCC--cE--Eeec-cCCCceEEEEEeeCCCEEEEEec-C----CeEEEEECCC
Q 010037          459 RRC--QV--VDYT-DIREIVSAVCYCPDGKGGIVGTM-T----GNCRFYDIKG  501 (519)
Q Consensus       459 ~~~--~~--~~~~-~~~~~V~~v~~spdg~~l~sgs~-d----g~v~iwdl~~  501 (519)
                      .++  +.  ..+. ........+.|+. |..|+..+. +    ..|..+++.+
T Consensus       303 ~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          303 RKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             SSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            875  23  3222 2334445555443 555554443 3    2577777764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.0069  Score=61.79  Aligned_cols=112  Identities=8%  Similarity=0.131  Sum_probs=70.1

Q ss_pred             CCeeEEEEcCCC-eEEEEeCC-C----cEEEEECCCCeE-EEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          389 SEVLDLSWSKNG-FLLSSSAD-K----TVRLWQVGIDRC-LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       389 ~~V~~l~~sp~~-~L~sgs~D-g----~V~lWdl~~~~~-~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      .....|+|++++ .|+.+... +    .+.+.+...... ...+........++++|.++.++++-..++.|..++...+
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~  258 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ  258 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence            456788899988 46655542 1    233334322110 1222223345678899956666666667889999999877


Q ss_pred             cEEee--ccCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECC
Q 010037          462 QVVDY--TDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIK  500 (519)
Q Consensus       462 ~~~~~--~~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~  500 (519)
                      ....+  .........++|+|+|++|+++ ...+.|..++..
T Consensus       259 ~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          259 ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            65322  2223457889999999955554 557789998765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.17  E-value=0.019  Score=60.79  Aligned_cols=80  Identities=10%  Similarity=0.032  Sum_probs=55.7

Q ss_pred             CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCce--EEEEEeeCCCE
Q 010037          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGKG  484 (519)
Q Consensus       407 ~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V--~~v~~spdg~~  484 (519)
                      .++.|..||+.+++.+-.+.+...+....+.. .+..++.++.||.|+.||.++++++........+  ..+.|..+|+.
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            45789999999999888776554444444444 5677788999999999999999988433222222  23446688875


Q ss_pred             EEE
Q 010037          485 GIV  487 (519)
Q Consensus       485 l~s  487 (519)
                      ++.
T Consensus       521 yv~  523 (571)
T 2ad6_A          521 YIG  523 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.061  Score=54.66  Aligned_cols=70  Identities=13%  Similarity=0.151  Sum_probs=49.6

Q ss_pred             CeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCC-EEEEEeCCCeEEEEEcCC
Q 010037          390 EVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       390 ~V~~l~~sp-~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~iwd~~~  460 (519)
                      ....++++| ++ ++++-..++.|..++..++.....+.  .....+.|+|+| +++ ++++-...+.|..++...
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCc
Confidence            356788999 66 44555567889999998776533333  334578999999 888 455555678999988763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.15  E-value=0.22  Score=48.89  Aligned_cols=235  Identities=7%  Similarity=-0.057  Sum_probs=124.2

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccC
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~  316 (519)
                      ..|.+..+.. +|+.+. ...|+..+.......        .+......+..++|++....| ++-...+.|..+++...
T Consensus        36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~--------~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~  105 (349)
T 3v64_C           36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT--------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS  105 (349)
T ss_dssp             SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEE--------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcccccccCc-eeEeec-ccceEEEeCCCCeeE--------EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence            3444555533 444333 344666666532211        122233457899999765555 44456788988988765


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE-eeccCCCeeEEE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLS  395 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~  395 (519)
                      .....+......+..+++.+.. ..++.......              .+.+.+..     +..... +.........|+
T Consensus       106 ~~~~~~~~~~~~p~glavd~~~-g~ly~~d~~~~--------------~I~~~~~d-----G~~~~~l~~~~l~~P~~ia  165 (349)
T 3v64_C          106 NVEEVVSTGLESPGGLAVDWVH-DKLYWTDSGTS--------------RIEVANLD-----GAHRKVLLWQSLEKPRAIA  165 (349)
T ss_dssp             SCEEEECSSCSCCCEEEEETTT-TEEEEEETTTT--------------EEEEEETT-----SCSCEEEECTTCSCEEEEE
T ss_pred             CceEEEeCCCCCccEEEEecCC-CeEEEEcCCCC--------------eEEEEcCC-----CCceEEEEeCCCCCcceEE
Confidence            4332222222233344433222 12222222111              11111111     111111 122334578999


Q ss_pred             EcCCC--eEEEEeCC-CcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCC
Q 010037          396 WSKNG--FLLSSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR  470 (519)
Q Consensus       396 ~sp~~--~L~sgs~D-g~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~  470 (519)
                      +.|.+  ++++-... +.|..+++.......... .-...+.|+|+|.++.++++-...+.|..+|+....... .....
T Consensus       166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~  245 (349)
T 3v64_C          166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL  245 (349)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred             EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCC
Confidence            99855  44444444 788888887543332222 344578999998445555555567889999987643322 22223


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       471 ~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      .....+++ ..+.++++-...+.|..++..+++
T Consensus       246 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          246 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence            45677888 455555666667889888855544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.99  E-value=0.062  Score=54.67  Aligned_cols=116  Identities=4%  Similarity=-0.081  Sum_probs=73.1

Q ss_pred             CCeeEEEEcC-CCeEE-EEeCCCcEEEEECCCCeEEE-Eec--CCCcEEEEEEeeCCCC-EEEEEeCCCeEEEEEcC--C
Q 010037          389 SEVLDLSWSK-NGFLL-SSSADKTVRLWQVGIDRCLR-VFS--HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVR--R  460 (519)
Q Consensus       389 ~~V~~l~~sp-~~~L~-sgs~Dg~V~lWdl~~~~~~~-~~~--h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~iwd~~--~  460 (519)
                      .....++++| ++.|+ +-..++.|+.+|..++.... .+.  ....-..|+|+| +++ ++++-...+.|+.++..  +
T Consensus       228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~~~~~d~~~  306 (433)
T 4hw6_A          228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIYRVDYNRET  306 (433)
T ss_dssp             SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEEEEEBCTTT
T ss_pred             CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEEEEeCCCCC
Confidence            3456788899 66554 44567789999998776622 222  223345799999 887 45555567899998865  2


Q ss_pred             CcEE---eecc---------------CCCceEEEEE---------eeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          461 CQVV---DYTD---------------IREIVSAVCY---------CPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       461 ~~~~---~~~~---------------~~~~V~~v~~---------spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +...   .+.+               .-.....+++         .++|.++++-...+.|+.++. ++.+..
T Consensus       307 ~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t  378 (433)
T 4hw6_A          307 GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTT  378 (433)
T ss_dssp             CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEE
T ss_pred             cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEE
Confidence            3211   1111               1123567888         677776666666778999885 455443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.98  E-value=0.12  Score=49.51  Aligned_cols=109  Identities=13%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             CeeEEEEcCCC-eEEEEeC-CC-cEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc--
Q 010037          390 EVLDLSWSKNG-FLLSSSA-DK-TVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--  462 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~-Dg-~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~--  462 (519)
                      .+..+++.+++ ++++... ++ .|..+|..+++......  .......++..+ ++..+++-..++.|.++|..+++  
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe
Confidence            46788999998 4444333 22 46677777777654333  233345566555 45555555568899999987652  


Q ss_pred             EEee-------c--cCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECCC
Q 010037          463 VVDY-------T--DIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKG  501 (519)
Q Consensus       463 ~~~~-------~--~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~~  501 (519)
                      +...       .  ..-...+.+  +|+++.|+++ ...+.|..|++..
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence            2211       0  111234555  8898766655 4567899999874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.97  E-value=0.065  Score=56.92  Aligned_cols=78  Identities=10%  Similarity=0.058  Sum_probs=52.7

Q ss_pred             CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCC--CceEEEEEeeCCCE
Q 010037          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKG  484 (519)
Q Consensus       407 ~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~--~~V~~v~~spdg~~  484 (519)
                      .++.|..||+.+++.+-...+...+..-.+.. .+.+++.++.|+.|+.||.++++++-.....  ....-+.|..+|+.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            45789999999999887775433332222223 5677888999999999999999988322222  22233567788864


Q ss_pred             E
Q 010037          485 G  485 (519)
Q Consensus       485 l  485 (519)
                      .
T Consensus       530 y  530 (599)
T 1w6s_A          530 Y  530 (599)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.96  E-value=0.093  Score=51.07  Aligned_cols=108  Identities=9%  Similarity=0.135  Sum_probs=66.8

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      ...+..+.+.+++.++.++.+|.+++.+...++.-..+.     +...+.+|.+.| ++.+++++. +|.| ++....++
T Consensus       204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i-~~S~DgG~  280 (327)
T 2xbg_A          204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL-LCSQDGGQ  280 (327)
T ss_dssp             SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE-EEESSTTS
T ss_pred             CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE-EEeCCCCc
Confidence            345677888888866666778888776533233222222     234589999998 677776654 6766 34444443


Q ss_pred             EEe-ec---cCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          463 VVD-YT---DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       463 ~~~-~~---~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      .-. ..   .....+.++.|.+++. +++++.+|.|.-++-
T Consensus       281 tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          281 TWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             SCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             ccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            322 11   2345678899986665 666677898776653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.92  E-value=0.33  Score=46.94  Aligned_cols=197  Identities=5%  Similarity=-0.088  Sum_probs=112.4

Q ss_pred             cceeecCCCCeE-EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEecccC
Q 010037          239 GSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       239 ~~~~~sp~g~~l-asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      ..++|++.+..| .+-...+.|..++........      ..+...-.....+++.+. +.++++-...+.|.++++...
T Consensus        38 ~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~------~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           38 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC------EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE------EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            357888855444 455566888888876442110      011222234567888864 444455555667777776432


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      ... .+                                                             +.........+++
T Consensus       112 ~~~-~l-------------------------------------------------------------~~~~~~~P~giav  129 (318)
T 3sov_A          112 LRK-VL-------------------------------------------------------------FWQELDQPRAIAL  129 (318)
T ss_dssp             SCE-EE-------------------------------------------------------------ECSSCSSEEEEEE
T ss_pred             cEE-EE-------------------------------------------------------------EeCCCCCccEEEE
Confidence            110 00                                                             0011234567888


Q ss_pred             cCCC-eEEEEe--CCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee-ccCCC
Q 010037          397 SKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIRE  471 (519)
Q Consensus       397 sp~~-~L~sgs--~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~~~  471 (519)
                      .|.+ .|+.+.  ..+.|...++.......... .-...+.|+|+|.++.++.+=+..+.|..+|+.......+ .....
T Consensus       130 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~  209 (318)
T 3sov_A          130 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP  209 (318)
T ss_dssp             EGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS
T ss_pred             eCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC
Confidence            8754 544443  35678888876443322222 3345789999994444555555678999999875433222 22334


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       472 ~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ....+++. .+.++++-...+.|..++..+++.
T Consensus       210 ~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          210 HPFALTLF-EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence            56677775 334555655678899999876653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.89  E-value=0.13  Score=49.90  Aligned_cols=210  Identities=8%  Similarity=0.034  Sum_probs=115.8

Q ss_pred             ceeecCCCCeEEeee-cCCeEEEeeCCccccccccccccceeec-CCCCEEEEEE---ccCCCEEEEEeC----------
Q 010037          240 SATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKF---SLDGQYLASGGE----------  304 (519)
Q Consensus       240 ~~~~sp~g~~lasgs-~dg~I~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~f---spdg~~LaSgs~----------  304 (519)
                      +.+|++....+..++ ..++|..|+..........+... ...+ ....+..|.|   .|+++++++...          
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~-s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGA-SSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTT-CCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCc-cccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            368888666666665 78999999987433211111000 0001 0113578999   688777775431          


Q ss_pred             ---CCcEEEEecc---cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037          305 ---DGTVRVWKVI---EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (519)
Q Consensus       305 ---Dg~I~iWd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (519)
                         +..|..+|+.   +++......+...                                                 . 
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~-------------------------------------------------~-  125 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKV-------------------------------------------------Q-  125 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHH-------------------------------------------------H-
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccc-------------------------------------------------c-
Confidence               5667778876   5543222211000                                                 0 


Q ss_pred             cceeEeec-cCCCeeEEEEcCCC-eEEEEeCC-CcEEEEECCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeC
Q 010037          379 KPLHEFQG-HSSEVLDLSWSKNG-FLLSSSAD-KTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       379 ~~~~~~~~-h~~~V~~l~~sp~~-~L~sgs~D-g~V~lWdl~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~  449 (519)
                      .....+.+ -.....+|+..++| ..++++.- +.|...+.........+.      .....+.|+++| +++.|++...
T Consensus       126 ~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~  204 (334)
T 2p9w_A          126 DEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGG  204 (334)
T ss_dssp             HHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESS
T ss_pred             ccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcC
Confidence            00000001 11247788889988 66667766 776666655442222211      122367999999 8888888777


Q ss_pred             CCeEEEEEcCCCcE--Eeec--c---CCCceEEE-EEeeCCCEEEE-EecCCeEEEEECCC
Q 010037          450 DGKVRIWEVRRCQV--VDYT--D---IREIVSAV-CYCPDGKGGIV-GTMTGNCRFYDIKG  501 (519)
Q Consensus       450 Dg~V~iwd~~~~~~--~~~~--~---~~~~V~~v-~~spdg~~l~s-gs~dg~v~iwdl~~  501 (519)
                      .|.|..+|+.+...  +...  +   .-.....+ .--.+|+.|++ ....+.+.+.+...
T Consensus       205 ~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          205 PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            99999999985433  3222  2   11223443 44458887444 44566666665544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.87  E-value=0.35  Score=47.51  Aligned_cols=240  Identities=15%  Similarity=0.105  Sum_probs=114.4

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC---CCEEEEEeC-C-----CcEE
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE-D-----GTVR  309 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~LaSgs~-D-----g~I~  309 (519)
                      ..++|.|+|.++++ ...|.|++++ ......+....   .+.........|+|+|+   +.+|..+.. .     ..|.
T Consensus        34 ~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           34 WALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             EEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             eEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            35899999985555 5669999998 32111111110   11222456889999998   554544432 2     5677


Q ss_pred             EEecccCee------eceeec---cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc--
Q 010037          310 VWKVIEHER------LDGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE--  378 (519)
Q Consensus       310 iWd~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--  378 (519)
                      .++...+..      +..+..   .......+.+.++.  .++....+...... ..-.....+.+..+++...-...  
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~-~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYEREL-AQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGG-GGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCcc-ccCCCCCceEEEEEcCCCCCCCCCc
Confidence            777654311      111110   01122344444433  23322211110000 00001122344444433100000  


Q ss_pred             -------cceeEeeccCCCeeEEEEcC-CCeEEEEe-CCCcE------EEEECCCC------------------eEEEEe
Q 010037          379 -------KPLHEFQGHSSEVLDLSWSK-NGFLLSSS-ADKTV------RLWQVGID------------------RCLRVF  425 (519)
Q Consensus       379 -------~~~~~~~~h~~~V~~l~~sp-~~~L~sgs-~Dg~V------~lWdl~~~------------------~~~~~~  425 (519)
                             .......+| .....++|+| ++.|+++. ....+      .|.-+..+                  .++..+
T Consensus       186 f~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          186 FLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             ccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                   011111233 3367899999 56444432 22221      12222222                  122333


Q ss_pred             cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc-------EEeeccCCCceEEEEEeeCCCEEEEEe
Q 010037          426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-------VVDYTDIREIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       426 ~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~-------~~~~~~~~~~V~~v~~spdg~~l~sgs  489 (519)
                      .+......++| . ++.++++....+.|...++....       ...+......+..+++.|||.++++..
T Consensus       265 ~~~~ap~G~~~-~-~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 PQGFPPGNLAF-F-RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TTCCCEEEEEE-E-TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCCcceEE-E-CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            33445677888 3 67777776667788888776432       122323345789999999998766654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.85  E-value=0.047  Score=58.75  Aligned_cols=234  Identities=12%  Similarity=0.049  Sum_probs=119.2

Q ss_pred             eeecCCCCeEEeeec-CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-CC-----CcEEEEec
Q 010037          241 ATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-ED-----GTVRVWKV  313 (519)
Q Consensus       241 ~~~sp~g~~lasgs~-dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-~D-----g~I~iWd~  313 (519)
                      +++.+++.+++.|+. +..+.+||..........     .+.... .-.++...++|+.++.|| .+     ..+.+||.
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-----~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-----DMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-----CCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-----CCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            567789999999874 568999998754432111     111111 113455667999999998 44     56899999


Q ss_pred             ccCeeece-----eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeec--
Q 010037          314 IEHERLDG-----FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG--  386 (519)
Q Consensus       314 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--  386 (519)
                      .+++-...     ..........   .......++.+.......     ........+..+++...... .+......  
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~~---~~~~~~~iyv~Gg~~g~~-----~~~~~~~~v~~yd~~~~~w~-~~~~~~~~~~  392 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQG---LYRSDNHAWLFGWKKGSV-----FQAGPSTAMNWYYTSGSGDV-KSAGKRQSNR  392 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTG---GGTTTCSCCEEECGGGCE-----EECCSSSEEEEEECSTTCEE-EEEEECEETT
T ss_pred             CCCcceeCCCccccccccccccc---eeecCCceEEEECCCCcE-----EEecCccceeeeecCCccee-ecCCcccccc
Confidence            77653211     0000000000   000111111211111110     00111123333333221110 01111000  


Q ss_pred             ----cCCCeeEEEEcC-CC-eEEEEeCCC-----------cEEEEECCCCeEEEEe--c--CCCcEEEEEEeeCCCCEEE
Q 010037          387 ----HSSEVLDLSWSK-NG-FLLSSSADK-----------TVRLWQVGIDRCLRVF--S--HNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       387 ----h~~~V~~l~~sp-~~-~L~sgs~Dg-----------~V~lWdl~~~~~~~~~--~--h~~~V~~v~fsp~d~~~l~  445 (519)
                          ....-.++.+.. ++ .++.|+.++           .|.+||..+.......  .  ....-.+.+..| ++.+++
T Consensus       393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v  471 (656)
T 1k3i_A          393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFI  471 (656)
T ss_dssp             EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEE
T ss_pred             ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEE
Confidence                011223344433 45 666666432           6888998888776554  2  222234455667 899999


Q ss_pred             EEeCC-----------CeEEEEEcCCCcEEee---ccCCCceEEEEEeeCCCEEEEEec
Q 010037          446 SGSID-----------GKVRIWEVRRCQVVDY---TDIREIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       446 sgs~D-----------g~V~iwd~~~~~~~~~---~~~~~~V~~v~~spdg~~l~sgs~  490 (519)
                      .|+.+           ..+.+||..+.+-...   ........+..+.|||+.++.|+.
T Consensus       472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          472 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            98854           4689999987654322   222233345667799999999885

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.66  E-value=0.44  Score=52.26  Aligned_cols=117  Identities=9%  Similarity=-0.045  Sum_probs=78.3

Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC-CeEEEEEcCCCcEE
Q 010037          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVV  464 (519)
Q Consensus       389 ~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D-g~V~iwd~~~~~~~  464 (519)
                      .....|++.+.+  ++++-...+.|.+.++........+. .-.....|+++|..+.++++-... +.|.+.++......
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            345677777655  55566677899999998665544443 445689999999444444443333 78999998766554


Q ss_pred             eecc-CCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCCeee
Q 010037          465 DYTD-IREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGMQIF  505 (519)
Q Consensus       465 ~~~~-~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~~l~  505 (519)
                      .+.. .-...+.|++.+.+..|+.+. ..+.|..+++.+....
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~  593 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  593 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE
Confidence            3332 335688999998777666664 4567999998765443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.58  E-value=0.58  Score=45.06  Aligned_cols=218  Identities=8%  Similarity=0.006  Sum_probs=115.1

Q ss_pred             CeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccC---eeece-eeccCCCCce
Q 010037          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEH---ERLDG-FDVQDTDPSC  331 (519)
Q Consensus       257 g~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~---~~~~~-~~~~~~~~~~  331 (519)
                      ..|+..++......        .+......+..++|++.+..| ++-..++.|..+++...   ..... +......+..
T Consensus        10 ~~I~~i~~~~~~~~--------~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A           10 HEVRKMTLDRSEYT--------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             SSEEEEETTSCCCE--------EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             CeEEEEECCCcceE--------ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            45777777643321        112234567899999866544 45555688999988651   11111 1111122333


Q ss_pred             EEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE-eeccCCCeeEEEEcCCC-eEEEEeC-C
Q 010037          332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLSWSKNG-FLLSSSA-D  408 (519)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~-~L~sgs~-D  408 (519)
                      +++.... ..++.......              .+.+++..     +..... +.........+++.|.+ .|+.+.. .
T Consensus        82 lavd~~~-~~ly~~d~~~~--------------~I~~~~~~-----g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~  141 (316)
T 1ijq_A           82 LAVDWIH-SNIYWTDSVLG--------------TVSVADTK-----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  141 (316)
T ss_dssp             EEEETTT-TEEEEEETTTT--------------EEEEEETT-----SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             EEEeecC-CeEEEEECCCC--------------EEEEEeCC-----CCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence            4333221 12222222211              22222111     111111 12233467899999855 5544443 3


Q ss_pred             -CcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec---cCCCceEEEEEeeCCC
Q 010037          409 -KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---DIREIVSAVCYCPDGK  483 (519)
Q Consensus       409 -g~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V~~v~~spdg~  483 (519)
                       +.|...++.......... .-...+.|+++|.++.++++-+..+.|..+|+.......+.   ........+++. .+.
T Consensus       142 ~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~  220 (316)
T 1ijq_A          142 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDK  220 (316)
T ss_dssp             SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTE
T ss_pred             CCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCE
Confidence             678888886543332222 34568899999934444455556779999999754332221   122345778884 455


Q ss_pred             EEEEEecCCeEEEEECCCCe
Q 010037          484 GGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       484 ~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ++++-...+.|..++..+++
T Consensus       221 ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          221 VFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEEEETTTTEEEEEETTTCC
T ss_pred             EEEEECCCCeEEEEeCCCCc
Confidence            56666667889999986654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.52  E-value=0.78  Score=45.86  Aligned_cols=220  Identities=8%  Similarity=-0.019  Sum_probs=116.1

Q ss_pred             cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCe----eeceeeccCCCC
Q 010037          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHE----RLDGFDVQDTDP  329 (519)
Q Consensus       255 ~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~----~~~~~~~~~~~~  329 (519)
                      ....|+..++......        .+......+..|+|++.+..| ++-...+.|+.+++....    ....+......+
T Consensus        90 ~~~~I~~i~l~~~~~~--------~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYT--------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             ETTEEEEECTTSCSCE--------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             ccceeEEEccCCccee--------EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            3467887777643221        123345678899999865555 444456788888876522    111111111122


Q ss_pred             ceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeE-eeccCCCeeEEEEcCCC-eEEEEe-
Q 010037          330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLSWSKNG-FLLSSS-  406 (519)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~-~L~sgs-  406 (519)
                      ..+++.... ..++.....              ...+.+.+..     +..... +.........|++.|.+ .|+.+. 
T Consensus       162 ~glavD~~~-~~lY~~d~~--------------~~~I~~~~~~-----g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~  221 (400)
T 3p5b_L          162 DGLAVDWIH-SNIYWTDSV--------------LGTVSVADTK-----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW  221 (400)
T ss_dssp             EEEEEETTT-TEEEEEETT--------------TTEEEEECTT-----TCSEEEEEECSSCCEEEEEEETTTTEEEEEEC
T ss_pred             ccEEEEecC-CceEEEECC--------------CCeEEEEeCC-----CCceEEEEeCCCCCcceEEEecccCeEEEEeC
Confidence            222222211 112222211              1222222221     111111 22233457899999855 554443 


Q ss_pred             -CCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc---CCCceEEEEEeeC
Q 010037          407 -ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD---IREIVSAVCYCPD  481 (519)
Q Consensus       407 -~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---~~~~V~~v~~spd  481 (519)
                       ..+.|...++.......... .-...+.|+++|..+.++++-...+.|..+|+.......+..   .-....++++ ..
T Consensus       222 ~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~  300 (400)
T 3p5b_L          222 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FE  300 (400)
T ss_dssp             SSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ET
T ss_pred             CCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eC
Confidence             24788888887654443333 335789999998444444454567889999987654332221   2234556776 34


Q ss_pred             CCEEEEEecCCeEEEEECCCCe
Q 010037          482 GKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       482 g~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +.++++-...+.|..+|..+++
T Consensus       301 ~~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          301 DKVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             TEEEEEESSSCSEEEEESSSCC
T ss_pred             CEEEEecCCCCeEEEEEcCCCC
Confidence            4455566667889999966654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.49  E-value=0.055  Score=55.11  Aligned_cols=112  Identities=10%  Similarity=0.132  Sum_probs=65.8

Q ss_pred             CCeeEEEEcCCCeEEEEeCC----Cc-EEEEECCCCeE-EEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          389 SEVLDLSWSKNGFLLSSSAD----KT-VRLWQVGIDRC-LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~sgs~D----g~-V~lWdl~~~~~-~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      .....|++++++.|+.+...    .. +...+...+.. ...+..-.....++++|.++.++++-..++.|+.+|..++.
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~  261 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT  261 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence            34678888888843333321    11 22222221110 01222233456788898556666666677899999998776


Q ss_pred             EE-ee--ccCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECC
Q 010037          463 VV-DY--TDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIK  500 (519)
Q Consensus       463 ~~-~~--~~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~  500 (519)
                      .. .+  .........++|+|+|+.|.++ ...+.|+.+++.
T Consensus       262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            62 22  1222334579999999955555 456789998765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.46  E-value=0.59  Score=45.16  Aligned_cols=112  Identities=6%  Similarity=-0.041  Sum_probs=73.0

Q ss_pred             CeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe--CCCeEEEEEcCCCcEE
Q 010037          390 EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVV  464 (519)
Q Consensus       390 ~V~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs--~Dg~V~iwd~~~~~~~  464 (519)
                      ....+++.+. + ++++-...+.|.++++........+ ..-.....|+++| .+.+|+...  ..+.|...++......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~  158 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRF  158 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence            3556777764 4 5555566788999998765433333 3445678999999 444444444  2578888888754332


Q ss_pred             ee-ccCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCC
Q 010037          465 DY-TDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGM  502 (519)
Q Consensus       465 ~~-~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~  502 (519)
                      .+ ...-...+.++++|++..|..+. ..+.|..+|+.+.
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            22 22234568999999777666654 4678999998754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.43  E-value=0.72  Score=50.55  Aligned_cols=113  Identities=4%  Similarity=-0.080  Sum_probs=69.1

Q ss_pred             CeeEEEEcCCC-eEEEEe-C-CCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          390 EVLDLSWSKNG-FLLSSS-A-DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs-~-Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      ....|++.|.+ +|+.+. . .+.|...++........+. .-...+.|+++|..+.++++=...+.|...++.......
T Consensus       515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~  594 (791)
T 3m0c_C          515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT  594 (791)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE
Confidence            46788888864 554443 2 3678888887655544444 335789999998445445554556789999987654433


Q ss_pred             ecc---CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          466 YTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       466 ~~~---~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +..   .-....+|++.. +.++++-...+.|...|..+++
T Consensus       595 v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          595 ILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             EEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             EecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence            221   122345666632 2344444456778888866653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.38  E-value=0.45  Score=46.80  Aligned_cols=111  Identities=14%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             CCeeEEEEcCCCeEEEEeC----C------------CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCC
Q 010037          389 SEVLDLSWSKNGFLLSSSA----D------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDG  451 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~sgs~----D------------g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg  451 (519)
                      ...+++.+.++|.++.+..    |            ..=+||.+..+++......-...+.|+|+| +++.|+.+. ..+
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~  243 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISP-DGKYVYIAELLAH  243 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECT-TSSEEEEEEGGGT
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECC-CCCEEEEEeCCCC
Confidence            3567788888884333322    1            223344433343333333445679999999 887666554 578


Q ss_pred             eEEEEEcCC-CcEE--eeccCCCceEEEEEee-CCCEEEEEecCC-eEEEEECC
Q 010037          452 KVRIWEVRR-CQVV--DYTDIREIVSAVCYCP-DGKGGIVGTMTG-NCRFYDIK  500 (519)
Q Consensus       452 ~V~iwd~~~-~~~~--~~~~~~~~V~~v~~sp-dg~~l~sgs~dg-~v~iwdl~  500 (519)
                      .|..|++.. +.+.  .........-.+++.+ +|++.+++..+| .|..|+..
T Consensus       244 ~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          244 KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             eEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            999999864 3332  1223356678899999 598777665443 34444443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.31  E-value=0.02  Score=62.28  Aligned_cols=115  Identities=4%  Similarity=-0.073  Sum_probs=67.3

Q ss_pred             eeEEEEcCCC-eEEEEe-C-CCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee
Q 010037          391 VLDLSWSKNG-FLLSSS-A-DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs-~-Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~  466 (519)
                      ...|++.|.+ +|+.+. . .+.|..+++........+. .-...+.|+|+|..+.++++-+..+.|.++++.......+
T Consensus       498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~  577 (699)
T 1n7d_A          498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  577 (699)
T ss_dssp             CCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEE
T ss_pred             cceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEE
Confidence            4566777754 333332 2 2677777765433222222 2345678999995566666666778999999975433322


Q ss_pred             cc---CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          467 TD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       467 ~~---~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ..   ......+|++..+ .++++....+.|..++..+++...
T Consensus       578 ~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          578 LEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             CCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             EecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence            21   1123345556443 344555567889999988776544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.29  E-value=0.11  Score=53.65  Aligned_cols=107  Identities=8%  Similarity=0.159  Sum_probs=68.7

Q ss_pred             CeeEEEE-------cCCC-eEEEEeCCC-------cEEEEECCC-C--------eEEEEecCCCcEEEEEEeeCCCCEEE
Q 010037          390 EVLDLSW-------SKNG-FLLSSSADK-------TVRLWQVGI-D--------RCLRVFSHNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       390 ~V~~l~~-------sp~~-~L~sgs~Dg-------~V~lWdl~~-~--------~~~~~~~h~~~V~~v~fsp~d~~~l~  445 (519)
                      ....|+|       ++++ .|+.+...+       .|.+.+... +        ..+..+.|   ...++++|.++.+++
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~---p~giavdp~~g~LYv  263 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ---CNGATIHPINGELYF  263 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC---CCCEEECTTTCCEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC---ceEEEEcCCCCeEEE
Confidence            4678888       8888 566665543       255665333 1        22233333   456788996666677


Q ss_pred             EEeCCCeEEEEEcC-------CCcE--------------EeeccCCCceEEEEEeeCCCEEEEE-ecCCeEEEEEC
Q 010037          446 SGSIDGKVRIWEVR-------RCQV--------------VDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDI  499 (519)
Q Consensus       446 sgs~Dg~V~iwd~~-------~~~~--------------~~~~~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl  499 (519)
                      +-..++.|..+|+.       ++..              +.........+.++|+|+|+.|.++ +....|+.++.
T Consensus       264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            77788899999997       5543              1112233456899999999965555 45677888554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.26  E-value=0.13  Score=48.15  Aligned_cols=115  Identities=10%  Similarity=0.165  Sum_probs=83.5

Q ss_pred             eeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037          384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (519)
Q Consensus       384 ~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~  459 (519)
                      +.+-...+..|+|+|++  ++++...++.|...|+. ++.++.+..  ....-.|++.+ ++.++++.-.++.|.++++.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEEC
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcC
Confidence            44555679999999976  55557778899999998 888888753  35678889988 77777776677899999886


Q ss_pred             CCcE---Eeec-------cCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          460 RCQV---VDYT-------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       460 ~~~~---~~~~-------~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      ....   +...       ..+.....++|+|+++.|+++.......||.+.
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            5431   2111       233456899999999888888776665666554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.03  E-value=0.55  Score=48.35  Aligned_cols=114  Identities=7%  Similarity=-0.041  Sum_probs=67.4

Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEECC-------CCeE--------------EEEecCCCcEEEEEEeeCCCCE-EEE
Q 010037          391 VLDLSWSKNG--FLLSSSADKTVRLWQVG-------IDRC--------------LRVFSHNNYVTSVAFNPVDDNY-FIS  446 (519)
Q Consensus       391 V~~l~~sp~~--~L~sgs~Dg~V~lWdl~-------~~~~--------------~~~~~h~~~V~~v~fsp~d~~~-l~s  446 (519)
                      ...++.+|++  ++++-..++.|..+|+.       ++..              +.........+.|+|+| ++++ +++
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYva  327 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFG  327 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEE
Confidence            3567889954  55566677889999987       4543              22222345568999999 8885 455


Q ss_pred             EeCCCeEEEEEcC--CCcE---EeeccC---C------------CceE-EEEEe-------eCCCEEEEEecCCeEEEEE
Q 010037          447 GSIDGKVRIWEVR--RCQV---VDYTDI---R------------EIVS-AVCYC-------PDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       447 gs~Dg~V~iwd~~--~~~~---~~~~~~---~------------~~V~-~v~~s-------pdg~~l~sgs~dg~v~iwd  498 (519)
                      -+....|+.++..  .+.+   ..+.+.   .            .... .++..       ++|.++++=.....|+.++
T Consensus       328 D~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~  407 (496)
T 3kya_A          328 VINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT  407 (496)
T ss_dssp             ETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred             eCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe
Confidence            5567889996653  3322   111111   0            1233 34444       4566555555667788888


Q ss_pred             CCCCeeee
Q 010037          499 IKGMQIFD  506 (519)
Q Consensus       499 l~~~~l~~  506 (519)
                      . ++.+..
T Consensus       408 ~-~G~v~T  414 (496)
T 3kya_A          408 P-EGIVST  414 (496)
T ss_dssp             T-TCBEEE
T ss_pred             C-CCCEEE
Confidence            3 444433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.78  E-value=1.5  Score=42.29  Aligned_cols=113  Identities=13%  Similarity=0.150  Sum_probs=66.3

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEE-EEC--CCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          389 SEVLDLSWSKNGFLLSSSADKTVRL-WQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~sgs~Dg~V~l-Wdl--~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      ..+..+++.+++.++..+.++.+.. +|-  .+-+.+ .......+..+.+.| ++.+++ ++.+|.|++.+...++.-.
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~-~g~~~~-~~~~G~~~~s~~D~G~tW~  239 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTP-DGRLWM-IVNGGKIAFSDPDNSENWG  239 (327)
T ss_dssp             CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECT-TSCEEE-EETTTEEEEEETTEEEEEC
T ss_pred             cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECC-CCCEEE-EeCCceEEEecCCCCCeeE
Confidence            4567888888884444444555443 442  222333 223566789999988 676554 4567888877533233322


Q ss_pred             ---ec--cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          466 ---YT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       466 ---~~--~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                         ..  .....+.++++.+++..++++. +|.| ++....++.++
T Consensus       240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~  283 (327)
T 2xbg_A          240 ELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQ  283 (327)
T ss_dssp             CCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCE
T ss_pred             eccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccE
Confidence               11  1223588999998887666654 6766 45555555444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.76  E-value=2.6  Score=44.85  Aligned_cols=227  Identities=6%  Similarity=-0.059  Sum_probs=122.4

Q ss_pred             eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCeeeceeeccCC
Q 010037          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDT  327 (519)
Q Consensus       249 ~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~~~~~~~~~~  327 (519)
                      +|+.+ ..+.|+..++........ .    .+ ..-..+..|+|++.+..| ++-..++.|..+++........+.....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~-~----~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVA-I----PL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEE-C----CC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEE-eCCcEEEEECCCCCcceE-E----Ec-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence            34443 557788888874332110 0    01 123467899999965554 4555678898888865433222222222


Q ss_pred             CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-eccCCCeeEEEEcCC-CeEEEE
Q 010037          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKN-GFLLSS  405 (519)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~-~~L~sg  405 (519)
                      .+..+++.... ..++.......              .+.+.+..     +.....+ ...-.....|++.|. |.|+-+
T Consensus        81 ~P~GlAvD~~~-~~LY~tD~~~~--------------~I~v~~~d-----G~~~~~l~~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           81 YPEGMAVDWLG-KNLYWADTGTN--------------RIEVSKLD-----GQHRQVLVWKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             CCCEEEEETTT-TEEEEEETTTT--------------EEEEEETT-----STTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred             CcceEEEEeCC-CEEEEEECCCC--------------EEEEEecC-----CCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence            33344433222 12222222211              11111111     1111111 123345689999985 555544


Q ss_pred             e--CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC
Q 010037          406 S--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (519)
Q Consensus       406 s--~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~  483 (519)
                      .  ..+.|...++........+..-...+.|++++..+.++.+-...+.|...|+.......+........++++.. +.
T Consensus       141 D~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~  219 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DY  219 (628)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TE
T ss_pred             CCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CE
Confidence            4  35678888887665444445556789999999334444444567889999987643322222233456777754 44


Q ss_pred             EEEEEecCCeEEEEECCCCe
Q 010037          484 GGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       484 ~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ++++-...+.|...|..+++
T Consensus       220 ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          220 IYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEEETTTTEEEEEETTTCC
T ss_pred             EEEecCCCCEEEEEECCCCC
Confidence            44454457889999976654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.60  E-value=1.9  Score=42.10  Aligned_cols=114  Identities=5%  Similarity=-0.061  Sum_probs=76.8

Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC-CeEEEEEcCCCcEE
Q 010037          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVV  464 (519)
Q Consensus       389 ~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D-g~V~iwd~~~~~~~  464 (519)
                      .....+++.+.+  ++++-...+.|.+.++........+. .-.....|+++|.++.++.+-... +.|..+++......
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~  195 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR  195 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE
Confidence            345678888744  55566667889999987654433333 345679999999455555555555 78999988764433


Q ss_pred             eec-cCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCC
Q 010037          465 DYT-DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGM  502 (519)
Q Consensus       465 ~~~-~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~  502 (519)
                      .+. ..-...+.++++|++..|..+. ..+.|..+|+.+.
T Consensus       196 ~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          196 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            322 2334578999998777666654 4677999998764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.57  E-value=0.48  Score=47.44  Aligned_cols=68  Identities=13%  Similarity=0.247  Sum_probs=51.3

Q ss_pred             cCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCC--eEEEEec----------CCCcEEEEEEeeCCCCEEEEEe--
Q 010037          387 HSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGID--RCLRVFS----------HNNYVTSVAFNPVDDNYFISGS--  448 (519)
Q Consensus       387 h~~~V~~l~~sp~~----~L~sgs~Dg~V~lWdl~~~--~~~~~~~----------h~~~V~~v~fsp~d~~~l~sgs--  448 (519)
                      ...+|..+.|+|-+    .|++-..|++||+||+...  ++. .+.          ....|.+++|.+ ++-.|...+  
T Consensus       123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t  200 (452)
T 3pbp_A          123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTT  200 (452)
T ss_dssp             CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECT
T ss_pred             CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecC
Confidence            36789999999965    8999999999999999852  222 332          225788999998 777676655  


Q ss_pred             CCCeEEEE
Q 010037          449 IDGKVRIW  456 (519)
Q Consensus       449 ~Dg~V~iw  456 (519)
                      .+|.|+-.
T Consensus       201 ~~GDIYAl  208 (452)
T 3pbp_A          201 EGGDIFAF  208 (452)
T ss_dssp             TSCEEEEE
T ss_pred             CCCCEEEE
Confidence            77887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.54  E-value=0.21  Score=50.06  Aligned_cols=77  Identities=13%  Similarity=0.098  Sum_probs=53.1

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccc-----cccccceeec------CCCCEEEEEEcc---CCCEEEEEe
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEFLA------HEGSILTMKFSL---DGQYLASGG  303 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~-----~~~~~~~l~~------H~~~I~~l~fsp---dg~~LaSgs  303 (519)
                      +..+..+|+|.+||..+ +..|.|-.+........     .....+.+.-      ...+|..+.|+|   .+..|++-.
T Consensus        68 i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           68 TFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             eeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            34478999999999875 45788887773221111     0011112221      357899999999   456899999


Q ss_pred             CCCcEEEEeccc
Q 010037          304 EDGTVRVWKVIE  315 (519)
Q Consensus       304 ~Dg~I~iWd~~~  315 (519)
                      .|++||+||+..
T Consensus       147 sD~~Ir~yDl~~  158 (452)
T 3pbp_A          147 EDDTITMFDILN  158 (452)
T ss_dssp             TTSCEEEEETTC
T ss_pred             cCCEEEEEEccc
Confidence            999999999975

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.44  E-value=0.91  Score=45.10  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=77.6

Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       389 ~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      ..+..++|.+.+  ++++-...+.|..+++........+. .......|++.+..++++++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            347789999754  55555677889999998776555443 233557789988556666666677889999987654332


Q ss_pred             -eccCCCceEEEEEeeCCCEEEEEec-C-CeEEEEECCCC
Q 010037          466 -YTDIREIVSAVCYCPDGKGGIVGTM-T-GNCRFYDIKGM  502 (519)
Q Consensus       466 -~~~~~~~V~~v~~spdg~~l~sgs~-d-g~v~iwdl~~~  502 (519)
                       ....-.....+++.|.+..|..... . +.|..+++.+.
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~  235 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  235 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence             2233356789999987666555543 3 67888888754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.36  E-value=0.78  Score=45.06  Aligned_cols=90  Identities=13%  Similarity=0.222  Sum_probs=58.0

Q ss_pred             CCcEEEEECCCC--e--EEEEecC--CCcEEEEEEeeCCCCEEEEEeC-----------------CCeEEEEEcCCCcEE
Q 010037          408 DKTVRLWQVGID--R--CLRVFSH--NNYVTSVAFNPVDDNYFISGSI-----------------DGKVRIWEVRRCQVV  464 (519)
Q Consensus       408 Dg~V~lWdl~~~--~--~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~-----------------Dg~V~iwd~~~~~~~  464 (519)
                      +.+|.+|++...  .  .+..+.+  -...+.+.+.+ ++.++++...                 .|.|.-+|..  ++.
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE
Confidence            467777776543  2  2233332  34679999999 8888777641                 2445555543  332


Q ss_pred             eeccCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECC
Q 010037          465 DYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIK  500 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~  500 (519)
                      .....-...+.++|+||++.|.++. ..+.|+.|++.
T Consensus       215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            2233334568999999998877765 57889999986

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.06  E-value=1.5  Score=41.29  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=57.9

Q ss_pred             CcEEEEECCCCeEEEEec--CCC-cEEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCcEEeeccC---CCceEEEE
Q 010037          409 KTVRLWQVGIDRCLRVFS--HNN-YVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDI---REIVSAVC  477 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~--h~~-~V~~v~fsp~d~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~---~~~V~~v~  477 (519)
                      ..+.+||+.+.+....-.  ... ...++.+   ++.+++.|+.+     ..|.+||+.+.+-......   ......+.
T Consensus       175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~  251 (301)
T 2vpj_A          175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV  251 (301)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             ceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE
Confidence            468899998887655432  111 1122222   56777777764     4689999988764433221   11222222


Q ss_pred             EeeCCCEEEEEecC-----CeEEEEECCCCeeeecc
Q 010037          478 YCPDGKGGIVGTMT-----GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       478 ~spdg~~l~sgs~d-----g~v~iwdl~~~~l~~~~  508 (519)
                        -++++++.|+.+     ..+.+||+.+++-..+.
T Consensus       252 --~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  285 (301)
T 2vpj_A          252 --LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVT  285 (301)
T ss_dssp             --ETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred             --ECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcC
Confidence              377788888765     46899999988765554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.05  E-value=2.5  Score=40.39  Aligned_cols=114  Identities=10%  Similarity=-0.011  Sum_probs=76.1

Q ss_pred             CCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC-CeEEEEEcCCCcEE
Q 010037          389 SEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVV  464 (519)
Q Consensus       389 ~~V~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D-g~V~iwd~~~~~~~  464 (519)
                      .....+++.+. + ++++-...+.|.+.++........+. .-.....++++|.++.++++.... +.|...++......
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~  156 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE
Confidence            34578888864 4 44555678899999988655444443 345678999999444444444333 78888888654333


Q ss_pred             ee-ccCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCC
Q 010037          465 DY-TDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGM  502 (519)
Q Consensus       465 ~~-~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~  502 (519)
                      .+ ...-...+.++++|++..|..+. ..+.|..+|+.+.
T Consensus       157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            22 22335678999999877776655 4568999998754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.97  E-value=0.28  Score=44.58  Aligned_cols=97  Identities=9%  Similarity=-0.006  Sum_probs=57.4

Q ss_pred             eeEEEEcCCCeEEEEeCCCcEEEEECCCCeEE------EEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCL------RVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       391 V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~------~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      -..+.|.|+|.|..+ .||.|.-++-.+....      ..+.  -=..+..|.|.| ++.+.++.  |+.++-+...+..
T Consensus        90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~  165 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN  165 (236)
T ss_dssp             CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred             ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence            467889999966555 5688877765332111      1111  113579999999 88887777  8876544443222


Q ss_pred             EEee-------c-cCCCceEEEEEeeCCCEEEEEecCCe
Q 010037          463 VVDY-------T-DIREIVSAVCYCPDGKGGIVGTMTGN  493 (519)
Q Consensus       463 ~~~~-------~-~~~~~V~~v~~spdg~~l~sgs~dg~  493 (519)
                      ...+       . ..-...+-+.|.|+|.+.++.  +|.
T Consensus       166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~  202 (236)
T 1tl2_A          166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK  202 (236)
T ss_dssp             TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence            1111       1 122234557799999876665  664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.90  E-value=2.3  Score=45.21  Aligned_cols=196  Identities=6%  Similarity=-0.074  Sum_probs=107.1

Q ss_pred             ceeecCCCCeEEee-ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEecccCe
Q 010037          240 SATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       240 ~~~~sp~g~~lasg-s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      .++|++.+..|..+ ...+.|..++........      ..+..--.....|++.+.+. +.++-...+.|.+.++....
T Consensus        44 ~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~------~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~  117 (619)
T 3s94_A           44 AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL  117 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC-----CE------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEccCCCceE------EEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence            47888876666554 346788888876432100      01222224678999998555 44454566788888875432


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      .. .+                                                             +...-.....|++.
T Consensus       118 ~~-~l-------------------------------------------------------------~~~~l~~P~~Iavd  135 (619)
T 3s94_A          118 RK-VL-------------------------------------------------------------FWQELDQPRAIALD  135 (619)
T ss_dssp             CE-EE-------------------------------------------------------------ECSSCSCCCCEEEE
T ss_pred             EE-EE-------------------------------------------------------------EeCCCCCCceEEEe
Confidence            11 00                                                             00112335677887


Q ss_pred             CCC-eEEEEeC--CCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeecc-CCCc
Q 010037          398 KNG-FLLSSSA--DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IREI  472 (519)
Q Consensus       398 p~~-~L~sgs~--Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~~~  472 (519)
                      |.+ .|+.+..  .+.|...++.......... .-...+.|+++|..++++++-...+.|...|+.......... ....
T Consensus       136 p~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~  215 (619)
T 3s94_A          136 PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH  215 (619)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------
T ss_pred             cCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCC
Confidence            754 4444432  3566666665443333332 445678999999444455555566789999987644332211 1222


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ..++++..+ ..+++-...+.|...|..+++.
T Consensus       216 P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          216 PFALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             ceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            346667555 3344444567799999877653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.73  E-value=1.9  Score=40.76  Aligned_cols=96  Identities=8%  Similarity=0.112  Sum_probs=57.0

Q ss_pred             CCcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCcEEeecc---CCCceEEEE
Q 010037          408 DKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTD---IREIVSAVC  477 (519)
Q Consensus       408 Dg~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~---~~~~V~~v~  477 (519)
                      -..+.+||+.+.+....-.  ....-.+++..  ++.+++.|+.+     ..|.+||+.+.+-.....   ......++.
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence            3458899998887655432  11111122222  56677777653     368999998865433221   122223333


Q ss_pred             EeeCCCEEEEEecC-----CeEEEEECCCCeeeec
Q 010037          478 YCPDGKGGIVGTMT-----GNCRFYDIKGMQIFDL  507 (519)
Q Consensus       478 ~spdg~~l~sgs~d-----g~v~iwdl~~~~l~~~  507 (519)
                      +  ++++++.|+.+     ..+.+||+.+++-..+
T Consensus       246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  278 (306)
T 3ii7_A          246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWVAN  278 (306)
T ss_dssp             E--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred             E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence            3  77888888854     5689999998765544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.67  E-value=0.12  Score=55.96  Aligned_cols=113  Identities=9%  Similarity=-0.013  Sum_probs=69.1

Q ss_pred             eeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC-CeEEEEEcCCCcEEee
Q 010037          391 VLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVVDY  466 (519)
Q Consensus       391 V~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D-g~V~iwd~~~~~~~~~  466 (519)
                      ...|++.+. + ++++-...+.|.++++........+. .......|+++|..+.++++-... +.|.++++.......+
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l  534 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  534 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence            345666643 3 44454567889999987665444443 234567889999445555443333 6788887764332222


Q ss_pred             c-cCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECCCCe
Q 010037          467 T-DIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKGMQ  503 (519)
Q Consensus       467 ~-~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~~~~  503 (519)
                      . ..-...+.|+|+|++..|+.+ +..+.|.++++.+..
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~  573 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  573 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence            1 223456789999986655554 456789999987543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.26  E-value=9.7  Score=43.56  Aligned_cols=114  Identities=9%  Similarity=0.090  Sum_probs=73.8

Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEE--EecCCCcEEEEEEeeCC-----CCEEEEEeC-CCeEEEEEcCCC
Q 010037          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVD-----DNYFISGSI-DGKVRIWEVRRC  461 (519)
Q Consensus       390 ~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~--~~~h~~~V~~v~fsp~d-----~~~l~sgs~-Dg~V~iwd~~~~  461 (519)
                      .|...+.+.. .++.++ .+.+.++.+..++...  .......|.|+++.|..     ..+++.|.. |++|+|+.+.+.
T Consensus       515 ~I~~As~n~~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          515 NISVASCNSS-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             CCCEEEECSS-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEEeCCC-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence            4555554433 444444 5778888877654322  22356789999998732     479999997 999999999987


Q ss_pred             cEEeeccC--CCceEEEEEee--CCCEEEEEecCCeEEEEEC--CCCeee
Q 010037          462 QVVDYTDI--REIVSAVCYCP--DGKGGIVGTMTGNCRFYDI--KGMQIF  505 (519)
Q Consensus       462 ~~~~~~~~--~~~V~~v~~sp--dg~~l~sgs~dg~v~iwdl--~~~~l~  505 (519)
                      +.+.....  .....++++..  ...+|.+|-.||.+.-+.+  .++++.
T Consensus       593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~  642 (1158)
T 3ei3_A          593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS  642 (1158)
T ss_dssp             CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEE
T ss_pred             CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccc
Confidence            76643322  23455555543  3357889999999765544  455543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.24  E-value=5.1  Score=40.26  Aligned_cols=219  Identities=14%  Similarity=0.196  Sum_probs=127.3

Q ss_pred             CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEe
Q 010037          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT  335 (519)
Q Consensus       256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~  335 (519)
                      ..+|.|-|+.........     .+.+ +    +.-.+|..+.||-=. ..++.|+|+++...++.+...+.   .++|.
T Consensus        47 ~~~vvIiDl~~~~~~~rr-----pi~A-d----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~---VvfWk  112 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRR-----PISA-D----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWK  112 (494)
T ss_dssp             CCEEEEEETTSTTSCEEE-----ECCC-S----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEE
T ss_pred             CCeEEEEECCCCCcceec-----cccc-c----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC---ceEEE
Confidence            347888888764432111     1111 1    234567666666554 67999999999998888877654   33443


Q ss_pred             ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC----CCeeEEEEcCCC-e-EEEEe---
Q 010037          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS----SEVLDLSWSKNG-F-LLSSS---  406 (519)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~V~~l~~sp~~-~-L~sgs---  406 (519)
                      .-....+..+                .+..++.|+...   ...|.+.+..|.    ..|..-..+++. + +++|-   
T Consensus       113 Wis~~~l~lV----------------T~taVyHWsi~~---~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~  173 (494)
T 1bpo_A          113 WISLNTVALV----------------TDNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  173 (494)
T ss_dssp             EEETTEEEEE----------------CSSEEEEEESSS---SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEE
T ss_pred             ecCCCeEEEE----------------cCCeeEEecccC---CCCchhheecchhcccceEEEEEECCCCCeEEEEeeccc
Confidence            3332222211                122344444322   234555565553    467777777777 4 33432   


Q ss_pred             ---CCCcEEEEECCCCeEEEEecCCCcEEEEEEee--CCCCEEEEEeC---CCeEEEEEcCCC---------cEEeec--
Q 010037          407 ---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP--VDDNYFISGSI---DGKVRIWEVRRC---------QVVDYT--  467 (519)
Q Consensus       407 ---~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp--~d~~~l~sgs~---Dg~V~iwd~~~~---------~~~~~~--  467 (519)
                         ..|.+.||.++.+.....-.|......+.+.-  ....+|+.+..   .++++|.++...         +.+...  
T Consensus       174 ~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp  253 (494)
T 1bpo_A          174 QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  253 (494)
T ss_dssp             TTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred             CCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC
Confidence               34778899988776554444544443333321  01123444433   379999998542         122211  


Q ss_pred             --cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          468 --DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       468 --~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                        ...+-.-++..++.-..+..-+.-|.+++||+.++.++..
T Consensus       254 pe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          254 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             TTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence              1234456788888888899999999999999999987654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.20  E-value=4.5  Score=39.48  Aligned_cols=242  Identities=12%  Similarity=0.031  Sum_probs=115.3

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC---CCEEEEEeC----C----Cc
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE----D----GT  307 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~LaSgs~----D----g~  307 (519)
                      ..++|.|+|.++++ ...|.|++++.. ....+..+.   .+.........|+|+|+   +..|..+..    +    ..
T Consensus        32 ~~ia~~pdG~l~V~-e~~g~I~~~d~~-G~~~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           32 WSIAPLGGGRYLVT-ERPGRLVLISPS-GKKLVASFD---VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             EEEEEEETTEEEEE-ETTTEEEEECSS-CEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             eEEEEcCCCeEEEE-eCCCEEEEEeCC-CceEeeccc---eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            35899999985554 556999998733 221111111   11122356889999997   444444332    2    45


Q ss_pred             EEEEecccCe--e------eceeec-cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccc
Q 010037          308 VRVWKVIEHE--R------LDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (519)
Q Consensus       308 I~iWd~~~~~--~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (519)
                      |..|+.....  .      +..+.. .......+.+.++.  .++....+....... .-.....+.+..+++.-.-...
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG--~Lyvt~G~~~~~~~~-~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG--MLYITTGDAADPRLA-QDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS--CEEEECCCTTCGGGG-TCTTCCSSEEEEECTTSCCCTT
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC--cEEEEECCCCCCccc-cCCCCCCeEEEEEcCCCCCCCC
Confidence            6667665431  0      111111 11122334444433  222221111000000 0001122344444432110000


Q ss_pred             c----ceeEeeccCCCeeEEEEcC-CCeEEEEeCCC----cEEEEECCC----------------CeEEEEe-cCCCcEE
Q 010037          379 K----PLHEFQGHSSEVLDLSWSK-NGFLLSSSADK----TVRLWQVGI----------------DRCLRVF-SHNNYVT  432 (519)
Q Consensus       379 ~----~~~~~~~h~~~V~~l~~sp-~~~L~sgs~Dg----~V~lWdl~~----------------~~~~~~~-~h~~~V~  432 (519)
                      .    ......+|. ....|+|+| ++.|+++....    .|.+..-..                ..++..+ .......
T Consensus       184 npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          184 NPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             SSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence            0    011122333 356899999 56555543321    133322110                0123333 2234577


Q ss_pred             EEEEee------CCCCEEEEEeCCCeEEEEEcCCC-cEE---eec-cCCCceEEEEEeeCCCEEEEEe
Q 010037          433 SVAFNP------VDDNYFISGSIDGKVRIWEVRRC-QVV---DYT-DIREIVSAVCYCPDGKGGIVGT  489 (519)
Q Consensus       433 ~v~fsp------~d~~~l~sgs~Dg~V~iwd~~~~-~~~---~~~-~~~~~V~~v~~spdg~~l~sgs  489 (519)
                      .++|..      .++.++++....+.|...++... +..   .+. .....+..+++.|||.++++..
T Consensus       263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            888841      26777777767788999888753 332   222 2245789999999997666654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.17  E-value=0.045  Score=49.80  Aligned_cols=102  Identities=11%  Similarity=0.002  Sum_probs=64.3

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCc--------EEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 010037          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY--------VTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~--------V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~  460 (519)
                      ..+.+++|+|+|.|... .++.+.-.+..+.....-+.....        ..++.|.| ++.+.++  .||.|+-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence            36779999998866665 677666656544211111111111        47889999 8887777  569998888754


Q ss_pred             CcEEeecc--------CCCceEEEEEeeCCCEEEEEecCCeEEE
Q 010037          461 CQVVDYTD--------IREIVSAVCYCPDGKGGIVGTMTGNCRF  496 (519)
Q Consensus       461 ~~~~~~~~--------~~~~V~~v~~spdg~~l~sgs~dg~v~i  496 (519)
                      ...-.+..        .-..+..|.+.|+|.+.++.  ||.++-
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            32222111        11357999999999877666  787543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.15  E-value=4.6  Score=40.97  Aligned_cols=33  Identities=9%  Similarity=-0.005  Sum_probs=22.7

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      -...+.|+|.|+|+++++--..+.|++++..++
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            345689999999997776543346777765433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.76  E-value=6.3  Score=39.60  Aligned_cols=241  Identities=10%  Similarity=0.160  Sum_probs=140.3

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe-ee
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-RL  319 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~-~~  319 (519)
                      .-.+|..+.+|.-. ..++.|++++...+.-+       +. ....|.-=+|-.+ +.|+-.+. ..|.-|++.... ..
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks-------~~-~~e~VvfWkWis~-~~l~lVT~-taVyHWsi~~~s~P~  139 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA-------HT-MTDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPV  139 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEE-------EE-CSSCCCEEEEEET-TEEEEECS-SEEEEEESSSSCCCE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcc-------ee-cCCCceEEEecCC-CeEEEEcC-CeeEEecccCCCCch
Confidence            35778877777654 68899999985443211       11 1245666677644 45666654 579999996532 33


Q ss_pred             ceeeccCC--CCceEEEeecCCCCeEEee-ccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          320 DGFDVQDT--DPSCLYFTINHLSQLIPID-VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       320 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      +.+..+..  ....+.+..+.......+. ...        -.+...+.+.++     ....+.-+.+.||.+.-..+..
T Consensus       140 kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~--------~~~~v~G~mQLY-----S~er~~sQ~ieGhaa~F~~~~~  206 (494)
T 1bpo_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA--------QQNRVVGAMQLY-----SVDRKVSQPIEGHAASFAQFKM  206 (494)
T ss_dssp             EEEECCGGGTTCEEEEEEECTTSSEEEEEEEEE--------ETTEEEEEEEEE-----ESTTCCEEEECCSEEEEEEEEC
T ss_pred             hheecchhcccceEEEEEECCCCCeEEEEeecc--------cCCcccceEEEe-----eccccccchheeeeeeeEEEec
Confidence            33333222  2333334333333322211 100        000011222222     2223445667788766555544


Q ss_pred             cCCC----eEEEEeCC---CcEEEEECCCC---------eEEEEe-c---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          397 SKNG----FLLSSSAD---KTVRLWQVGID---------RCLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       397 sp~~----~L~sgs~D---g~V~lWdl~~~---------~~~~~~-~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      ..+.    .++.+...   +.++|-++...         +.+..+ .   ..+...++..++ ....+..-+.-|.|++|
T Consensus       207 ~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~ly  285 (494)
T 1bpo_A          207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLY  285 (494)
T ss_dssp             TTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEE
T ss_pred             CCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEE
Confidence            3322    34444433   78899888543         111111 1   356678899999 77888888999999999


Q ss_pred             EcCCCcEEe-eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          457 EVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       457 d~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      |+.++.++. -.-..+.|...+.......++....+|.|.--.+....++.
T Consensus       286 DleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp  336 (494)
T 1bpo_A          286 DLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP  336 (494)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred             ecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence            999999884 33345566666666676778888889988877777666543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.51  E-value=2.8  Score=40.90  Aligned_cols=34  Identities=15%  Similarity=0.053  Sum_probs=25.9

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEecccC
Q 010037          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       283 H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~  316 (519)
                      .-...+.|+|.|||++|++--..|.|++++...+
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g   63 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG   63 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence            3456789999999997777655888988875444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=93.47  E-value=6.6  Score=38.95  Aligned_cols=203  Identities=10%  Similarity=-0.041  Sum_probs=105.8

Q ss_pred             ccceeecCCCCeEEee-ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeccc
Q 010037          238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIE  315 (519)
Q Consensus       238 ~~~~~~sp~g~~lasg-s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~I~iWd~~~  315 (519)
                      ...++|++.+..|... ...+.|+.+++...... .  .....+.........|++.+ .+++.++-...+.|.+.++..
T Consensus       114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-~--~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-S--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC-------C--CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             ceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-C--cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            3457899866655544 45678888887642210 0  00011222345678899988 455555556678899988865


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-eccCCCeeEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL  394 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l  394 (519)
                      ......+......+..+++.+.. ..++.......             ..+...+.     .+.....+ ...-.....|
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~-------------~~I~~~~~-----dG~~~~~~~~~~l~~P~gl  251 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTP-------------AKIKKGGL-----NGVDIYSLVTENIQWPNGI  251 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSS-------------CCEEEEET-----TSCSCEEEECSSCSCEEEE
T ss_pred             CceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCC-------------CEEEEEeC-----CCCccEEEEECCCCceEEE
Confidence            54333332222223333333322 11222221110             11111111     11111111 2223567889


Q ss_pred             EEcCCC-eEE-EEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          395 SWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       395 ~~sp~~-~L~-sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      ++++.+ .|+ +-+..+.|..+|+..........   .-.....|++.  .+.++.+-...+.|..+|..+++.+
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          252 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             EEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCce
Confidence            999866 554 44567889999987654333332   22445677773  4566667667788999997776544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.43  E-value=2.3  Score=40.36  Aligned_cols=95  Identities=9%  Similarity=0.132  Sum_probs=56.6

Q ss_pred             CcEEEEECCCCeEEEEec--CC-CcEEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCcEEeeccC---CCceEEEE
Q 010037          409 KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDI---REIVSAVC  477 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~---~~~V~~v~  477 (519)
                      ..+.+||+.+.+....-.  .. ....++.+   ++.+++.|+.+     ..+.+||+.+.+-......   ......+.
T Consensus       184 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~  260 (308)
T 1zgk_A          184 NSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV  260 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             ceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE
Confidence            458899998876654322  11 11222222   56777777664     4699999988754432221   11222222


Q ss_pred             EeeCCCEEEEEecC-----CeEEEEECCCCeeeecc
Q 010037          478 YCPDGKGGIVGTMT-----GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       478 ~spdg~~l~sgs~d-----g~v~iwdl~~~~l~~~~  508 (519)
                        -++++++.|+.+     ..+.+||+.+++-..+.
T Consensus       261 --~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  294 (308)
T 1zgk_A          261 --HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT  294 (308)
T ss_dssp             --ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred             --ECCEEEEEcCcCCCcccceEEEEcCCCCEEeecC
Confidence              367788888754     45889999988765543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.56  E-value=8.2  Score=41.76  Aligned_cols=114  Identities=10%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEe-c-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 010037          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-S-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (519)
Q Consensus       388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~-~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~  461 (519)
                      ...|.++...+++.|..++.. -|..++..+++..... .     ....|.++...+ ++..|..|+. +-|..+|..++
T Consensus       145 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          145 NNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             CSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTT
T ss_pred             CCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCC
Confidence            346888888888866666654 4778888777643321 1     123488888877 5665555553 45888998877


Q ss_pred             cEEeecc-CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          462 QVVDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       462 ~~~~~~~-~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +...... ....|.++...++|. |.+|+.+ -+.+|+..++++..
T Consensus       222 ~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-Gl~~~~~~~~~~~~  265 (758)
T 3ott_A          222 QIKQTEAFHNNSIKSLALDGNGD-LLAGTDN-GLYVYHNDTTPLQH  265 (758)
T ss_dssp             EEEEEEEEEEEEEEEEEECTTCC-EEEEETT-EEEEECCTTSCCEE
T ss_pred             eEEeccCCCCCeEEEEEEcCCCC-EEEEeCC-ceeEEecCCCcEEE
Confidence            6543221 234578888877876 4555644 57888887765543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.51  E-value=2.7  Score=40.99  Aligned_cols=98  Identities=15%  Similarity=0.166  Sum_probs=62.1

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEE--EEec----CCCcEEEEEEeeCC----CCEEEEEeCC-----Ce
Q 010037          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCL--RVFS----HNNYVTSVAFNPVD----DNYFISGSID-----GK  452 (519)
Q Consensus       388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~--~~~~----h~~~V~~v~fsp~d----~~~l~sgs~D-----g~  452 (519)
                      -.....|+|.|+|.|+.+..++.|++++  .++..  ..+.    .......|+|+| +    +.++++-...     ..
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence            3457899999999666667789999998  44322  2121    235689999999 6    4444443332     67


Q ss_pred             EEEEEcCCCc-----E-Ee-ec---cCCCceEEEEEeeCCCEEEEE
Q 010037          453 VRIWEVRRCQ-----V-VD-YT---DIREIVSAVCYCPDGKGGIVG  488 (519)
Q Consensus       453 V~iwd~~~~~-----~-~~-~~---~~~~~V~~v~~spdg~~l~sg  488 (519)
                      |..|+.....     . +. +.   ........++|.|||.++++-
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            8888877532     1 12 22   111234689999999766653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.95  E-value=2.6  Score=41.27  Aligned_cols=99  Identities=13%  Similarity=0.118  Sum_probs=62.5

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCe-EEEEec----CCCcEEEEEEeeCC----CCEEEEEeC---C----C
Q 010037          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVFS----HNNYVTSVAFNPVD----DNYFISGSI---D----G  451 (519)
Q Consensus       388 ~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~-~~~~~~----h~~~V~~v~fsp~d----~~~l~sgs~---D----g  451 (519)
                      -.....|+|.|+|.|+.+..++.|++++ ..++ .+..+.    .......|+|+| +    +.++++-+.   +    .
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence            3457899999999777777789999997 3444 222221    235689999999 5    444444332   3    5


Q ss_pred             eEEEEEcCCC-------cEE-e-ecc-CCCceEEEEEeeCCCEEEEE
Q 010037          452 KVRIWEVRRC-------QVV-D-YTD-IREIVSAVCYCPDGKGGIVG  488 (519)
Q Consensus       452 ~V~iwd~~~~-------~~~-~-~~~-~~~~V~~v~~spdg~~l~sg  488 (519)
                      .|..|+....       +.+ . +.. .......++|.|||.++++-
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            6777887654       111 1 111 11234679999999876664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.63  E-value=2.9  Score=40.84  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=21.5

Q ss_pred             CCEEEEEEccCCC-EEEEEeCCCcEEEEec
Q 010037          285 GSILTMKFSLDGQ-YLASGGEDGTVRVWKV  313 (519)
Q Consensus       285 ~~I~~l~fspdg~-~LaSgs~Dg~I~iWd~  313 (519)
                      ...+.|+|.|+|+ +++ +...|.|++++.
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEET
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeC
Confidence            3568999999999 554 556788888874

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.23  E-value=7.7  Score=36.27  Aligned_cols=96  Identities=10%  Similarity=0.128  Sum_probs=56.5

Q ss_pred             CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCcEEeeccCC---CceEEEEE
Q 010037          409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIR---EIVSAVCY  478 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~~---~~V~~v~~  478 (519)
                      ..+.+||+.+.+....-.  ....-.+++. - ++.+++.|+.+     ..+.+||+.+.+-.......   .....+. 
T Consensus       128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-  204 (301)
T 2vpj_A          128 TSMERYDPNIDQWSMLGDMQTAREGAGLVV-A-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-  204 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             ceEEEEcCCCCeEEECCCCCCCcccceEEE-E-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-
Confidence            358889988876554432  1111112222 2 56777777654     45899999887544322211   1122222 


Q ss_pred             eeCCCEEEEEecC-----CeEEEEECCCCeeeecc
Q 010037          479 CPDGKGGIVGTMT-----GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       479 spdg~~l~sgs~d-----g~v~iwdl~~~~l~~~~  508 (519)
                       -++++++.|+.+     ..+.+||+.+++-..+.
T Consensus       205 -~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  238 (301)
T 2vpj_A          205 -LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT  238 (301)
T ss_dssp             -ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             -ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence             367777888764     46899999988765553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=91.08  E-value=9.9  Score=35.51  Aligned_cols=98  Identities=14%  Similarity=0.159  Sum_probs=57.9

Q ss_pred             CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCcEEeeccCCCc-eEEEEEee
Q 010037          409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIREI-VSAVCYCP  480 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~~~~-V~~v~~sp  480 (519)
                      ..+.+||+.+.+....-.  ....-.+++..  ++.+++.|+.+     ..+.+||+.+.+-......... ....+...
T Consensus       173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~  250 (302)
T 2xn4_A          173 STVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV  250 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             cEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE
Confidence            458899999887665432  11111122222  57778887764     3689999988654432221111 11112223


Q ss_pred             CCCEEEEEecCC-----eEEEEECCCCeeeecc
Q 010037          481 DGKGGIVGTMTG-----NCRFYDIKGMQIFDLS  508 (519)
Q Consensus       481 dg~~l~sgs~dg-----~v~iwdl~~~~l~~~~  508 (519)
                      ++++++.|+.++     .+.+||+.+++-..+.
T Consensus       251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          251 NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred             CCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence            777888887654     4899999988765554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.03  E-value=12  Score=36.32  Aligned_cols=64  Identities=23%  Similarity=0.284  Sum_probs=43.3

Q ss_pred             ecCCCcEEEEEEeeC------CCCEEEEEeCCCeEEEEEcCCCcEEe---e-ccCCCceEEEEEeeCCCEEEEE
Q 010037          425 FSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRCQVVD---Y-TDIREIVSAVCYCPDGKGGIVG  488 (519)
Q Consensus       425 ~~h~~~V~~v~fsp~------d~~~l~sgs~Dg~V~iwd~~~~~~~~---~-~~~~~~V~~v~~spdg~~l~sg  488 (519)
                      +.+...+..+.|.+.      ++.+|++.-..+.|...++..++.+.   + ......+..+++.|||.++++.
T Consensus       267 ~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          267 WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            344456788888641      36677777678888888887665442   2 1234578999999999865543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=91.02  E-value=18  Score=38.30  Aligned_cols=115  Identities=5%  Similarity=-0.027  Sum_probs=76.4

Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcEE
Q 010037          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV  464 (519)
Q Consensus       389 ~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~~  464 (519)
                      .....|++.+.+  ++++-...+.|.+.++........+ ..-.....|+++|..+.++.+-. ..+.|...++......
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~  159 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT  159 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence            346678887654  4555566788999998765433333 34456789999994454444431 2568888888765544


Q ss_pred             eeccCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCCCe
Q 010037          465 DYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKGMQ  503 (519)
Q Consensus       465 ~~~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~~~  503 (519)
                      .+...-...+.|+++++++.|..+. ..+.|..+|+.+..
T Consensus       160 ~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~  199 (628)
T 4a0p_A          160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN  199 (628)
T ss_dssp             EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence            3334456678999999877776665 45779999987643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.00  E-value=9.8  Score=35.79  Aligned_cols=95  Identities=14%  Similarity=0.079  Sum_probs=56.2

Q ss_pred             CcEEEEECCCCeEEEEec--CC-CcEEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCcEEeecc---CCCceEEEE
Q 010037          409 KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTD---IREIVSAVC  477 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~---~~~~V~~v~  477 (519)
                      ..+.+||+.+.+....-.  .. ....++.+   ++.+++.|+.+     ..+.+||+.+.+-.....   ......++.
T Consensus       137 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  213 (308)
T 1zgk_A          137 NSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV  213 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             ccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE
Confidence            468889998876654432  11 11122222   56777777654     458999998765443221   112222233


Q ss_pred             EeeCCCEEEEEecC-----CeEEEEECCCCeeeecc
Q 010037          478 YCPDGKGGIVGTMT-----GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       478 ~spdg~~l~sgs~d-----g~v~iwdl~~~~l~~~~  508 (519)
                      +  ++++++.|+.+     ..+.+||+.+++-..+.
T Consensus       214 ~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          214 L--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             E--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             E--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence            3  77778888765     46999999987765543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.77  E-value=7.9  Score=37.26  Aligned_cols=57  Identities=11%  Similarity=-0.036  Sum_probs=31.2

Q ss_pred             eEEEEEcCCCcEEe---eccCCCceEEEEEeeCCCEEEEEecCC------eEEEEECCCCeeeecccc
Q 010037          452 KVRIWEVRRCQVVD---YTDIREIVSAVCYCPDGKGGIVGTMTG------NCRFYDIKGMQIFDLSTT  510 (519)
Q Consensus       452 ~V~iwd~~~~~~~~---~~~~~~~V~~v~~spdg~~l~sgs~dg------~v~iwdl~~~~l~~~~~~  510 (519)
                      .+.+||+.+.+-..   .......-.  +...++++++.|+.++      .|.++++.+++..+....
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            57889988754222   222222222  2335788888888653      466779988887766543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.51  E-value=9.2  Score=44.28  Aligned_cols=219  Identities=13%  Similarity=0.195  Sum_probs=120.2

Q ss_pred             CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEe
Q 010037          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT  335 (519)
Q Consensus       256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~  335 (519)
                      ..+|.|-|+.........     .+.+ .    +.-.+|..+.||-=. ..++.|+|+.+...++.+.....   .++|.
T Consensus        47 ~~~vvIidl~~~~~~~rr-----pi~A-d----sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~---VvfWk  112 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRR-----PISA-D----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWK  112 (1630)
T ss_pred             CceEEEEECCCCCCcccc-----cccc-h----hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC---ceEEE
Confidence            347888888764432111     0111 1    223466666665544 67899999999887777766443   45555


Q ss_pred             ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc----CCCeeEEEEcCCC-e-EEEEe---
Q 010037          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH----SSEVLDLSWSKNG-F-LLSSS---  406 (519)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~-~-L~sgs---  406 (519)
                      .-....+..+                .+..+..|+...   ...|...+..|    ...|..-..+++. + +++|-   
T Consensus       113 Wis~~~l~lV----------------T~~aVyHW~~~~---~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~  173 (1630)
T 1xi4_A          113 WISLNTVALV----------------TDNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  173 (1630)
T ss_pred             ecCCCeeEEE----------------cCCeEEEeccCC---CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccC
Confidence            5444333222                122344444422   22444444444    4567777777777 4 34432   


Q ss_pred             ---CCCcEEEEECCCCeEEEEecCCCcEEEEEEe--eCCCCEEEEEeC---CCeEEEEEcCCC---------cEEee-cc
Q 010037          407 ---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN--PVDDNYFISGSI---DGKVRIWEVRRC---------QVVDY-TD  468 (519)
Q Consensus       407 ---~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fs--p~d~~~l~sgs~---Dg~V~iwd~~~~---------~~~~~-~~  468 (519)
                         ..|.+.+|.+..+.....-+|......+...  +....+|+.+..   .++++|-++...         +.+.. ..
T Consensus       174 ~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~  253 (1630)
T 1xi4_A          174 QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  253 (1630)
T ss_pred             CCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC
Confidence               4578888887765433222233332222221  101122222221   368999998543         11111 11


Q ss_pred             ---CCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          469 ---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       469 ---~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                         ..+-..++..++.-..+..-+.-|.+++||+.++.++..
T Consensus       254 ~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          254 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             cccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence               123345677777777888889999999999999987643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.70  E-value=12  Score=40.23  Aligned_cols=107  Identities=20%  Similarity=0.217  Sum_probs=62.8

Q ss_pred             CC-eEEEEeCCC--cEEEEECCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeC--C-----CeEEEEEcCCCc
Q 010037          399 NG-FLLSSSADK--TVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI--D-----GKVRIWEVRRCQ  462 (519)
Q Consensus       399 ~~-~L~sgs~Dg--~V~lWdl~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~--D-----g~V~iwd~~~~~  462 (519)
                      ++ .++.|+.++  .+.+||..+.+....-.      ......++.+...++.+++.|+.  +     ..+.+||+.+.+
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            44 556665443  79999999887655431      12222335556522667777765  2     468999998876


Q ss_pred             ------EEeecc---CCCceEEEEEeeCCCEEEEEecC--------CeEEEEECCCCeee
Q 010037          463 ------VVDYTD---IREIVSAVCYCPDGKGGIVGTMT--------GNCRFYDIKGMQIF  505 (519)
Q Consensus       463 ------~~~~~~---~~~~V~~v~~spdg~~l~sgs~d--------g~v~iwdl~~~~l~  505 (519)
                            -.....   ....-.+++...++++++.|+.+        ..|.+||+.+++-.
T Consensus       580 w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          580 ATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             SSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             cccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence                  111111   11111233344447888888753        45999999987654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.59  E-value=33  Score=39.17  Aligned_cols=218  Identities=13%  Similarity=0.065  Sum_probs=101.7

Q ss_pred             CeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccC------CCEEEEEeC-CCcEEEEecccCeeec
Q 010037          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGE-DGTVRVWKVIEHERLD  320 (519)
Q Consensus       248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~LaSgs~-Dg~I~iWd~~~~~~~~  320 (519)
                      .+++.+. .+.|.++.+....  +..   ... ..-...|.|+++.|.      ++++|.|.. |++|+|+++.+.+.+.
T Consensus       524 ~~vvva~-g~~l~~fel~~~~--L~~---~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~  596 (1158)
T 3ei3_A          524 SQVVVAV-GRALYYLQIHPQE--LRQ---ISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH  596 (1158)
T ss_dssp             SEEEEEE-TTEEEEEEEETTE--EEE---EEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CEEEEEE-CCEEEEEEeeCCc--eee---ecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence            4555553 5667666665321  111   111 122567999999863      369999996 9999999998765544


Q ss_pred             eeeccCC-CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEE--EeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          321 GFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV--VLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      ....... .+..+.+.......              ....+-.++.+.  .++.....+.... ..+-| ..++.-..+.
T Consensus       597 ~~~L~~~~~p~si~l~~~~~~~--------------~L~igl~dG~l~~~~~d~~tg~l~d~r-~~~LG-~~pv~L~~~~  660 (1158)
T 3ei3_A          597 KEMLGGEIIPRSILMTTFESSH--------------YLLCALGDGALFYFGLNIETGLLSDRK-KVTLG-TQPTVLRTFR  660 (1158)
T ss_dssp             EEECCSSCCEEEEEEEEETTEE--------------EEEEEETTSEEEEEEECTTTCCEEEEE-EEECC-SSCCEEEEEE
T ss_pred             EEECCCCCCCcEEEEEEeCCCc--------------EEEEEeCCCeEEEEEEcCCCCccccce-eEEcC-CCceEEEEEe
Confidence            3333221 12222221111111              111111122221  1222111111111 11122 2333333333


Q ss_pred             CCC--eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCCcE--EeeccCCCc
Q 010037          398 KNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQV--VDYTDIREI  472 (519)
Q Consensus       398 p~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d-~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~  472 (519)
                      ..+  .++.++ +....+|--+..-....+....--....|+... .+-++..+ ++.++|..+.+-+.  +........
T Consensus       661 ~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~T  738 (1158)
T 3ei3_A          661 SLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYES  738 (1158)
T ss_dssp             SSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSE
T ss_pred             eCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCC
Confidence            333  333333 344444443332222222222222333454311 23444433 55699998865332  245566778


Q ss_pred             eEEEEEeeCCCEEEEEec
Q 010037          473 VSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~  490 (519)
                      +..++++|+.+.++++..
T Consensus       739 prri~y~~~~~~~~v~~~  756 (1158)
T 3ei3_A          739 PRKICYQEVSQCFGVLSS  756 (1158)
T ss_dssp             EEEEEEEGGGTEEEEEEE
T ss_pred             ceEEEEcCCCCEEEEEEE
Confidence            999999999887776653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.11  E-value=5.2  Score=38.81  Aligned_cols=98  Identities=9%  Similarity=-0.040  Sum_probs=57.4

Q ss_pred             eCCCcEEEEECCCCeEEEEec-----CCCcEEEEEEee-C-------CCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCc
Q 010037          406 SADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNP-V-------DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI  472 (519)
Q Consensus       406 s~Dg~V~lWdl~~~~~~~~~~-----h~~~V~~v~fsp-~-------d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~  472 (519)
                      +.||.|..++..++.....+.     ...++.. .=.| .       .+..+++|+.+|++...|+++|+++.......+
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~  142 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK  142 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence            689999999988886554443     2233322 1011 0       356788999999999999999999854333221


Q ss_pred             e------E--EEEEe-----eCCCEEEEEecCCeEEEEECCCCeee
Q 010037          473 V------S--AVCYC-----PDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       473 V------~--~v~~s-----pdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      .      .  +....     -.+..|+.+..+..+.+.+ ++++++
T Consensus       143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W  187 (339)
T 2be1_A          143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASY  187 (339)
T ss_dssp             CC--------------------CCEEEEEEEEEECEECC-TTSCCC
T ss_pred             cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCCeE
Confidence            1      0  11110     1235677777777777766 344443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.02  E-value=28  Score=37.50  Aligned_cols=115  Identities=11%  Similarity=0.011  Sum_probs=73.8

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCC------CeEE--EEec-----CCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGI------DRCL--RVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~------~~~~--~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i  455 (519)
                      ..|.++...+++.|..|+..+-|.++|..+      ....  ..+.     ....|.+|...+ ++++.+.++..+-|..
T Consensus       419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~  497 (758)
T 3ott_A          419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK  497 (758)
T ss_dssp             SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred             ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence            457788877888888888777788888543      1111  1221     234689999888 7877764333455888


Q ss_pred             EEcCCCcEEeeccC----CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          456 WEVRRCQVVDYTDI----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       456 wd~~~~~~~~~~~~----~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +|..+++...+...    ...+.++....+|.+. .|+..| +..|+..+++...
T Consensus       498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~~~  550 (758)
T 3ott_A          498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLW-VGFHGG-VMRINPKDESQQS  550 (758)
T ss_dssp             EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE-EEETTE-EEEECC--CCCCB
T ss_pred             EeCCCCceEEecCCCcCCCcccceEEECCCCCEE-EEecCc-eEEEecCCCceEE
Confidence            99988776654211    2457888888888754 556554 7888887665443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.57  E-value=15  Score=34.17  Aligned_cols=106  Identities=13%  Similarity=0.130  Sum_probs=61.2

Q ss_pred             CC-eEEEEeCCC-----cEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-------CeEEEEEcCCCcE
Q 010037          399 NG-FLLSSSADK-----TVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-------GKVRIWEVRRCQV  463 (519)
Q Consensus       399 ~~-~L~sgs~Dg-----~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D-------g~V~iwd~~~~~~  463 (519)
                      ++ .++.|+.++     .+.+||+.+.+....-.  ....-.+++..  ++.+++.|+.+       ..+.+||+.+.+-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            44 555665443     57889998887655432  11111222222  56777776643       3588999987654


Q ss_pred             Eeecc---CCCceEEEEEeeCCCEEEEEecC-----CeEEEEECCCCeeeecc
Q 010037          464 VDYTD---IREIVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       464 ~~~~~---~~~~V~~v~~spdg~~l~sgs~d-----g~v~iwdl~~~~l~~~~  508 (519)
                      .....   .......+.  -++++++.|+.+     ..+.+||+.+++-..+.
T Consensus       186 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  236 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA  236 (302)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC
T ss_pred             EECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC
Confidence            43221   111222222  367788888765     36899999987655543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=88.39  E-value=19  Score=34.93  Aligned_cols=85  Identities=12%  Similarity=0.188  Sum_probs=57.8

Q ss_pred             cceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECC-----CCeEEEEecC---CCcEEEEEEeeC-CCC-EEEEE
Q 010037          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-----IDRCLRVFSH---NNYVTSVAFNPV-DDN-YFISG  447 (519)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~-----~~~~~~~~~h---~~~V~~v~fsp~-d~~-~l~sg  447 (519)
                      +.++++.. .+.+-.+...+.. .|+.+-.+.-|..++..     +++.+..+..   ...+..|++-+. ++. ||++.
T Consensus       171 ~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS  249 (355)
T 3amr_A          171 KKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS  249 (355)
T ss_dssp             EEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred             eEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence            44555554 3567788888765 99999999777777755     4566666642   246888888541 334 66666


Q ss_pred             e-CCCeEEEEEcC-CCcEE
Q 010037          448 S-IDGKVRIWEVR-RCQVV  464 (519)
Q Consensus       448 s-~Dg~V~iwd~~-~~~~~  464 (519)
                      + .+.++.+||.. +.+.+
T Consensus       250 sQG~~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          250 SQGNSSYAIYDRQGKNKYV  268 (355)
T ss_dssp             EGGGTEEEEEESSTTCCEE
T ss_pred             cCCCCEEEEEECCCCCcEE
Confidence            6 57799999997 45544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=88.37  E-value=16  Score=42.45  Aligned_cols=240  Identities=10%  Similarity=0.159  Sum_probs=124.1

Q ss_pred             eecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe-eec
Q 010037          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-RLD  320 (519)
Q Consensus       242 ~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~-~~~  320 (519)
                      -.+|..+.+|.-. ..++.|+++....+.-+       +. ...+|.-=+|-.+ +.|+-.+ +..|..|++.... ..+
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks-------~~-~~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k  140 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKA-------HT-MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVK  140 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhcc-------cc-cCCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHH
Confidence            4677777776654 68899999975443221       11 1345666677544 3455554 3479999996432 222


Q ss_pred             eeeccCC--CCceEEEeecCCCCeEEe-eccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          321 GFDVQDT--DPSCLYFTINHLSQLIPI-DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       321 ~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      .+..+..  ....+.+..+.......+ .....        .+...+.+.+++.     ..+..+.+.||.+.-..+...
T Consensus       141 ~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~--------~~~v~G~mQLyS~-----er~~sQ~iegha~~F~~~~~~  207 (1630)
T 1xi4_A          141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ--------QNRVVGAMQLYSV-----DRKVSQPIEGHAASFAQFKME  207 (1630)
T ss_pred             HHhcchhcccCeeEEeeeCCCCCeEEEEeeccC--------CCcccceeeeeec-----ccccchhhhHhHhhhheeccC
Confidence            2222211  122222333322222211 11000        0111222222222     223334456665544333332


Q ss_pred             CC---C-eEEEEeC---CCcEEEEECCCC---e------EEEEe-c---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 010037          398 KN---G-FLLSSSA---DKTVRLWQVGID---R------CLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (519)
Q Consensus       398 p~---~-~L~sgs~---Dg~V~lWdl~~~---~------~~~~~-~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd  457 (519)
                      .+   . .++.+..   .+.++|-++...   .      .+..+ .   ..+...++..++ ....+..-+.-|.|.+||
T Consensus       208 ~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d  286 (1630)
T 1xi4_A          208 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYD  286 (1630)
T ss_pred             CCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEe
Confidence            11   1 2222221   267888887543   1      11111 1   245566788888 677788888899999999


Q ss_pred             cCCCcEEee-ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          458 VRRCQVVDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       458 ~~~~~~~~~-~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +.++.++.. .-....|...+.......++.....|.|.--.+....++.
T Consensus       287 ~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~  336 (1630)
T 1xi4_A          287 LETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP  336 (1630)
T ss_pred             cccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence            999988832 2234455555555554556666678877777776665543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=87.89  E-value=0.49  Score=46.13  Aligned_cols=107  Identities=7%  Similarity=-0.006  Sum_probs=66.9

Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEecCC--CcEEEEEEe--eCCCCEEEEE-eCCCeEEEEEcCCCcEEeecc-----
Q 010037          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFN--PVDDNYFISG-SIDGKVRIWEVRRCQVVDYTD-----  468 (519)
Q Consensus       399 ~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~--~~V~~v~fs--p~d~~~l~sg-s~Dg~V~iwd~~~~~~~~~~~-----  468 (519)
                      ++.++.++.||.|.-+|..+|+.+-.+...  .++....-.  +.++..++.. +.||.|..++..++.......     
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            348899999999999999999999888643  222221110  1122333333 589999999998874431111     


Q ss_pred             CCCceEE---EEE-e----eCCCEEEEEecCCeEEEEECCCCeee
Q 010037          469 IREIVSA---VCY-C----PDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       469 ~~~~V~~---v~~-s----pdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ...++..   ... .    -.+..+++|+.+|.+...|+.+|+++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~  134 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII  134 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence            1111111   000 0    04457889999999999999988754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=87.70  E-value=30  Score=36.41  Aligned_cols=114  Identities=7%  Similarity=-0.023  Sum_probs=71.8

Q ss_pred             CeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCcEEe
Q 010037          390 EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVD  465 (519)
Q Consensus       390 ~V~~l~~sp~-~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~~~~~~  465 (519)
                      ....|++.+. + ++++-+..+.|.+.++........+. .-.....|+++|..+.++.+-.. .+.|...++.......
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~  472 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV  472 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE
Confidence            4456777753 3 55555667889998887654333332 34568999999944555554322 3677777776543322


Q ss_pred             e-ccCCCceEEEEEeeCCCEEEEEec-CCeEEEEECCCCe
Q 010037          466 Y-TDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKGMQ  503 (519)
Q Consensus       466 ~-~~~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~~~  503 (519)
                      + ...-...+.|++.+++..|..+.. .+.|..+++.+..
T Consensus       473 l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~  512 (619)
T 3s94_A          473 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG  512 (619)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred             EEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence            2 223456789999987777766654 4678889886543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=86.77  E-value=21  Score=33.70  Aligned_cols=99  Identities=8%  Similarity=0.028  Sum_probs=50.5

Q ss_pred             EcCCC-eEE-EEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC--CeEEEEEcCCCcEEeeccCCC
Q 010037          396 WSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID--GKVRIWEVRRCQVVDYTDIRE  471 (519)
Q Consensus       396 ~sp~~-~L~-sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D--g~V~iwd~~~~~~~~~~~~~~  471 (519)
                      +++.+ .|+ +.....+|.+-++..+.....+...  .. ..+.| ++.+|+-....  ..|..-++.......+..  .
T Consensus       152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~--~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~--~  225 (302)
T 3s25_A          152 CNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN--CY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPNPVVLTE--A  225 (302)
T ss_dssp             SEEETTEEEEECTTTCCEEEEETTTTEEEEEECSC--EE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCCCEECSC--S
T ss_pred             eeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCC--cc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCCeEEEeC--C
Confidence            34445 333 3333567777777766555444322  22 23557 56666654433  356666666554333322  1


Q ss_pred             ceEEEEEeeCCCEEEEEec--CCeEEEEECCCC
Q 010037          472 IVSAVCYCPDGKGGIVGTM--TGNCRFYDIKGM  502 (519)
Q Consensus       472 ~V~~v~~spdg~~l~sgs~--dg~v~iwdl~~~  502 (519)
                      .+  ..|+|+|.+|.-++.  .+.|..-++.+.
T Consensus       226 ~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          226 NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             CE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             Cc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            22  347777777765432  345555555544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.77  E-value=7.6  Score=39.31  Aligned_cols=102  Identities=12%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCC-cEEEEECCCCeEE--EEec-------CCCcEEEEEEeeCC---CCEEEEEe-C----
Q 010037          388 SSEVLDLSWSKNGFLLSSSADK-TVRLWQVGIDRCL--RVFS-------HNNYVTSVAFNPVD---DNYFISGS-I----  449 (519)
Q Consensus       388 ~~~V~~l~~sp~~~L~sgs~Dg-~V~lWdl~~~~~~--~~~~-------h~~~V~~v~fsp~d---~~~l~sgs-~----  449 (519)
                      -...+.|+|.|+|.|+.+...+ .|++++..+++..  ..+.       .......|+|+| +   +.+|.... .    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEeccccC
Confidence            4467899999999666666665 6888886555432  2222       134677999999 4   44444333 2    


Q ss_pred             --------CCeEEEEEcCCC-------cEE-e-ec-cCCCceEEEEEeeCCCEEEEEec
Q 010037          450 --------DGKVRIWEVRRC-------QVV-D-YT-DIREIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       450 --------Dg~V~iwd~~~~-------~~~-~-~~-~~~~~V~~v~~spdg~~l~sgs~  490 (519)
                              ...|.-|++...       +.+ . +. ........|+|.|||.+.++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                    134555554321       111 1 11 11234788999999987776543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=86.74  E-value=20  Score=33.37  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=59.4

Q ss_pred             eEEEEeCC------CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeC---------CCeEEEEEcCCCcE
Q 010037          401 FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSI---------DGKVRIWEVRRCQV  463 (519)
Q Consensus       401 ~L~sgs~D------g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~---------Dg~V~iwd~~~~~~  463 (519)
                      .++.|+.+      ..+.+||..+.+....-.  ....-.+++..  ++.+++.|+.         -..+.+||+.+.+-
T Consensus       104 iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W  181 (306)
T 3ii7_A          104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW  181 (306)
T ss_dssp             EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred             EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence            45555543      468899998887655432  11111122222  5667777653         34588999988754


Q ss_pred             EeeccCC---CceEEEEEeeCCCEEEEEecC-----CeEEEEECCCCeeeecc
Q 010037          464 VDYTDIR---EIVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       464 ~~~~~~~---~~V~~v~~spdg~~l~sgs~d-----g~v~iwdl~~~~l~~~~  508 (519)
                      .......   ..-..+.  -++++++.|+.+     ..+.+||+.+++-..+.
T Consensus       182 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~  232 (306)
T 3ii7_A          182 TELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS  232 (306)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred             EECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC
Confidence            4332211   1122222  277777777754     35899999987655543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=85.55  E-value=24  Score=33.12  Aligned_cols=95  Identities=13%  Similarity=0.167  Sum_probs=55.0

Q ss_pred             CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCcEEeeccC---CCceEEEEE
Q 010037          409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDI---REIVSAVCY  478 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~---~~~V~~v~~  478 (519)
                      ..+.+||+.+.+....-.  ....-.+++..  ++.+++.|+.+     ..+.+||+.+.+-......   ......  .
T Consensus       175 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~  250 (318)
T 2woz_A          175 NRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL--V  250 (318)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE--E
T ss_pred             ceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE--E
Confidence            458999999887655432  11111122222  56777777653     3578899887654432221   111222  2


Q ss_pred             eeCCCEEEEEecC--------------CeEEEEECCCCeeeec
Q 010037          479 CPDGKGGIVGTMT--------------GNCRFYDIKGMQIFDL  507 (519)
Q Consensus       479 spdg~~l~sgs~d--------------g~v~iwdl~~~~l~~~  507 (519)
                      ..++++++.|+.+              ..+.+||+.+++-..+
T Consensus       251 ~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          251 SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            3467777887754              3588999988765444

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.28  E-value=57  Score=36.34  Aligned_cols=38  Identities=11%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec
Q 010037          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS  426 (519)
Q Consensus       389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~  426 (519)
                      ..+.+++..++. ++++-+.|+++|+|++.+++++.+..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            357778887777 99999999999999999999998763

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=81.06  E-value=36  Score=31.83  Aligned_cols=95  Identities=17%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             cEEEEECCCCeEEEEecCCCcE--EEEEEeeCCCCEEEEEeC------CCeEEEEEcCCCcEEeeccC---CCceEEEEE
Q 010037          410 TVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSI------DGKVRIWEVRRCQVVDYTDI---REIVSAVCY  478 (519)
Q Consensus       410 ~V~lWdl~~~~~~~~~~h~~~V--~~v~fsp~d~~~l~sgs~------Dg~V~iwd~~~~~~~~~~~~---~~~V~~v~~  478 (519)
                      .+.+||+.+.+....-......  .+++. . ++.+++.|+.      -..+.+||+.+.+-......   .....++. 
T Consensus       128 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-  204 (318)
T 2woz_A          128 SVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-  204 (318)
T ss_dssp             EEEEEETTTTEEEEECCCSSCEESCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             eEEEEeCCCCCEeECCCCCCcccccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-
Confidence            4788899888765543211111  12222 2 6777777764      23589999988754332221   11122222 


Q ss_pred             eeCCCEEEEEecC-----CeEEEEECCCCeeeecc
Q 010037          479 CPDGKGGIVGTMT-----GNCRFYDIKGMQIFDLS  508 (519)
Q Consensus       479 spdg~~l~sgs~d-----g~v~iwdl~~~~l~~~~  508 (519)
                       -++++++.|+.+     ..+.+||+.+++-..+.
T Consensus       205 -~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  238 (318)
T 2woz_A          205 -HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT  238 (318)
T ss_dssp             -ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC
T ss_pred             -ECCEEEEEcCcCCCCccceEEEEECCCCeEEECC
Confidence             367777887754     35789999887655443

>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}

Probab=80.13  E-value=0.91  Score=28.77  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=16.7

Q ss_pred             CCCcccccccccccccccccC
Q 010037            3 GVSNEEEEEQFFDTCEEISYV   23 (519)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~   23 (519)
                      -.++|+||-+|||+.+=|..+
T Consensus        11 e~SdEDed~EfFDA~efITv~   31 (47)
T 2rr3_B           11 DMSDEDDENEFFDAPEIITMP   31 (47)
T ss_dssp             CSCCCCCSSCCBCCCSSCSSC
T ss_pred             cccccccccccccccceeEcc
Confidence            356788899999999877654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=80.01  E-value=39  Score=31.55  Aligned_cols=103  Identities=7%  Similarity=0.113  Sum_probs=60.1

Q ss_pred             eEEEEeC-C-----CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCcEEeec
Q 010037          401 FLLSSSA-D-----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDYT  467 (519)
Q Consensus       401 ~L~sgs~-D-----g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg-----~V~iwd~~~~~~~~~~  467 (519)
                      .++.|+. +     ..+.+||+.+.+....-.  ....-.+++..  ++.+++.|+.++     .+.+||+.+.+-....
T Consensus       151 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  228 (315)
T 4asc_A          151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE  228 (315)
T ss_dssp             EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred             EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence            5556654 2     468999999886654432  11111122222  567778877654     5889999887544332


Q ss_pred             cC---CCceEEEEEeeCCCEEEEEecCC--------------eEEEEECCCCeeeec
Q 010037          468 DI---REIVSAVCYCPDGKGGIVGTMTG--------------NCRFYDIKGMQIFDL  507 (519)
Q Consensus       468 ~~---~~~V~~v~~spdg~~l~sgs~dg--------------~v~iwdl~~~~l~~~  507 (519)
                      ..   ......+  .-++++++.|+.++              .+.+||+.+++-..+
T Consensus       229 ~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          229 AFPQERSSLSLV--SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             CCSSCCBSCEEE--EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             CCCCcccceeEE--EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            21   1122222  23777788887642              478999988765444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	519
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.8 bits (247), Expect = 9e-24
 Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 11/193 (5%)

Query: 271 LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330
           + + Y  + F  H   +  ++ + DG  +AS   D TVRVW V   E             
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRK----SSDLTCVVLPPKVFRLLEKPLHEFQG 386
           C+ +        I      E     K        S D T  +            L    G
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVG 245

Query: 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYF 444
           H + V  + +   G F+LS + DKT+R+W     RC++  + H ++VTS+ F+     Y 
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYV 304

Query: 445 ISGSIDGKVRIWE 457
           ++GS+D  V++WE
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.3 bits (199), Expect = 2e-17
 Identities = 43/276 (15%), Positives = 79/276 (28%), Gaps = 52/276 (18%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
                H   +  + F      + S  ED T++VW     +              + F  +
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 338 HLSQLIPIDVDKEKI--------------------------DKTKSLRKSSDLTCVVLPP 371
                        K+                          +    +  S D T  +   
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN 429
           +        +  F GH   V  +  +++G  + S S D+TVR+W V    C      H +
Sbjct: 131 QTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 186

Query: 430 YVTSVAFNP-------------------VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI 469
            V  +++ P                       + +SGS D  +++W+V     +      
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF 505
              V  V +   GK  +        R +D K  +  
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 282

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 8e-11
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 2/127 (1%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436
              +   GH S V  + +      ++S+S D T+++W        R    H + V  ++F
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF 496
           +          +              +         VS+V   P+G   +  +     + 
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 497 YDIKGMQ 503
           ++++   
Sbjct: 128 WEVQTGY 134

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.4 bits (207), Expect = 2e-18
 Identities = 44/260 (16%), Positives = 93/260 (35%), Gaps = 31/260 (11%)

Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT-------------------------CVV 368
           +  +          +   I   K+   +  ++                            
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL-LSSSADKTVRLWQVGIDRCLRVFS- 426
                     +    F GH+ +V+ LS + +  L +S + D + +LW V    C + F+ 
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI---VSAVCYCPDGK 483
           H + + ++ F P + N F +GS D   R++++R  Q +       I   +++V +   G+
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

Query: 484 GGIVGTMTGNCRFYDIKGMQ 503
             + G    NC  +D     
Sbjct: 284 LLLAGYDDFNCNVWDALKAD 303

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 3e-15
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNY---VTSV 434
                F GH S++  + +  NG    + S D T RL+ +  D+ L  +SH+N    +TSV
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276

Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGN 493
           +F+       ++G  D    +W+  +             VS +    DG     G+    
Sbjct: 277 SFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335

Query: 494 CRFYD 498
            + ++
Sbjct: 336 LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 21/139 (15%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           Q F  HE  I  + F  +G   A+G +D T R++ +   + L  +   +        + +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDLSW 396
              +L+              L    D  C      V+  L+        GH + V  L  
Sbjct: 280 KSGRLL--------------LAGYDDFNC-----NVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 397 SKNG-FLLSSSADKTVRLW 414
           + +G  + + S D  +++W
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
           S +       L  G       V    K  R             H+  +  +  + DG  +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDDGMAV 327

Query: 300 ASGGEDGTVRVW 311
           A+G  D  +++W
Sbjct: 328 ATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 349 KEKI-DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406
           K +I D  K+   ++          V R+  +     +GH +++  + W  +   L+S+S
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 74

Query: 407 ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
            D  + +W       +      +++V + A+ P   NY   G +D    I+ ++  +
Sbjct: 75  QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTRE 130

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (200), Expect = 2e-17
 Identities = 43/223 (19%), Positives = 72/223 (32%), Gaps = 57/223 (25%)

Query: 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304
                +  G   R VRV   +            +    H+ S+ ++ F+ DGQ + SG  
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364
           D +V++W +            ++                                     
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSG------------------------------------ 298

Query: 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR 423
                              + GH   VL ++ ++N  ++LS S D+ V  W       L 
Sbjct: 299 --------------TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344

Query: 424 VFS-HNNYVTSVAFNPV-----DDNYFISGSIDGKVRIWEVRR 460
           +   H N V SVA         + N F +GS D K RIW+ ++
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 20/163 (12%)

Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
           NH   + P  +D +      +L+K ++   ++  P + R ++  LH+   H+S V  + +
Sbjct: 11  NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 70

Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------------------HNNYVTSVAFN 437
           S +G  L++  +KT ++++V     +   S                    + Y+ SV F+
Sbjct: 71  SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480
           P D  +  +G+ D  +RIW++   ++V      E         
Sbjct: 131 P-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 172

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 50/297 (16%), Positives = 96/297 (32%), Gaps = 51/297 (17%)

Query: 254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
                V        + +           + +  I ++ FS DG++LA+G ED  +R+W +
Sbjct: 91  SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150

Query: 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK------------- 360
              + +      + D   L +  +    +        +I   ++ +              
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210

Query: 361 -------------SSDLTCVVLPP---KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403
                        S D    V       +   L+       GH   V  + ++++G  ++
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 404 SSSADKTVRLWQVGIDRCLRVFS-------------HNNYVTSVAFNPVDDNYFISGSID 450
           S S D++V+LW +                       H ++V SVA    +D Y +SGS D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKD 329

Query: 451 GKVRIWEVRRCQVVD-YTDIREIVSAVCYC------PDGKGGIVGTMTGNCRFYDIK 500
             V  W+ +    +      R  V +V         P+      G+     R +  K
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 5e-13
 Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 16/237 (6%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE---RLDGFDVQDTDPSCLYF 334
            + L H   +  +KFS DG+YLA+G  + T +V++V +     RL      + DP  L  
Sbjct: 56  HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394
           + +  S L    V      K      ++     ++        +  +             
Sbjct: 115 SSSPSSDLYIRSVCFSPDGK----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 170

Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
            +     L+S S D+TVR+W +   +C    S  + VT+VA +P D  Y  +GS+D  VR
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 455 IWEVRRCQVVD--------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           +W+     +V+         T  ++ V +V +  DG+  + G++  + + ++++   
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 5e-14
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 21/239 (8%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL-----------------DGFDV 324
            H+  ++T      G  + SG +D T++VW  +  + L                 +    
Sbjct: 14  GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72

Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
             TD +   +       +  +      +       K           +V+ +        
Sbjct: 73  GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132

Query: 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444
                  +         ++S + D  V++W    + CL     +           D  + 
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHV 190

Query: 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           +SGS+D  +R+W+V     + +T                  + G      + +DIK  Q
Sbjct: 191 VSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 248

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 31/177 (17%)

Query: 290 MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349
                DG ++ SG  D ++RVW V     +       +  S +    N L          
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL---------- 230

Query: 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK 409
                   +  ++D T  +   K  + L+        H S V  L ++KN F+++SS D 
Sbjct: 231 --------VSGNADSTVKIWDIKTGQCLQTL-QGPNKHQSAVTCLQFNKN-FVITSSDDG 280

Query: 410 TVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDG----KVRIW 456
           TV+LW +     +R             V  +  +         GS +G    K+ + 
Sbjct: 281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN 437
             LH  QGH++ V  L +     ++S S D ++R+W V    C+   + H +  + +   
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC--PDGKGGIVGTMTGNCR 495
               N  +SG+ D  V+IW+++  Q +          +   C   +    I  +  G  +
Sbjct: 227 D---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283

Query: 496 FYDIK 500
            +D+K
Sbjct: 284 LWDLK 288

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 42/213 (19%), Positives = 71/213 (33%), Gaps = 34/213 (15%)

Query: 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356
           + + SG  D  V+VW       L            L F   H+                 
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV----------------- 190

Query: 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
            +  S D +  V   +        +H   GH S    +    N  L+S +AD TV++W +
Sbjct: 191 -VSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDI 244

Query: 417 GIDRCLRVFSHNNYVTS-VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV------DYTDI 469
              +CL+     N   S V     + N+ I+ S DG V++W+++  + +      +    
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304

Query: 470 REIVSAVCYCPDGK----GGIVGTMTGNCRFYD 498
             +V  +           G   GT        D
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 3/103 (2%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN 437
           K     +GH   V+         ++S S D T+++W     +CLR    H   V S    
Sbjct: 7   KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480
              +      +              +         V  +    
Sbjct: 67  D--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 107

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 4e-13
 Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 28/269 (10%)

Query: 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL 332
           SL            +  +++  D Q + SG  D T+++W     E             CL
Sbjct: 4   SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61

Query: 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC---------------------VVLPP 371
            +    +         +     T  +  +    C                     + +  
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV 431
                         GH + V  + +     + S+S D+T+++W         V + N + 
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIV-SASGDRTIKVWNTSTCEF--VRTLNGHK 178

Query: 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT 491
             +A     D   +SGS D  +R+W++     +   +  E +       + +  + G   
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-IVSGAYD 237

Query: 492 GNCRFYDIK-GMQIFDLSTTAYLFALLGH 519
           G  + +D+   +     + T  L  L+ H
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEH 266

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 4e-07
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 13/96 (13%)

Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV---------GIDRCL 422
           +++ +             E++      N  ++S + D  +++W +             CL
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 423 RVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
           R    H+  V  + F   D+   +S S D  + IW+
Sbjct: 261 RTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 248 HELTLGQRMRRVRVHPVK--KQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305
             +  G    +++V  +      R  +     +  + H G +  ++F  D   + S   D
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD 286

Query: 306 GTVRVW 311
            T+ +W
Sbjct: 287 DTILIW 292

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.2 bits (162), Expect = 1e-12
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 382 HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFN 437
           H F      +   +W+K+   +     +  V +++   ++ ++V     HN  VT V + 
Sbjct: 3   HSF--LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS---AVCYCPDGKGGIVGTMTGNC 494
           P D N  ++   D    +W ++         I  I      V + P+ K   VG+ +   
Sbjct: 61  P-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119

Query: 495 RFYDIKGMQ 503
                +   
Sbjct: 120 SICYFEQEN 128

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 25/213 (11%), Positives = 56/213 (26%), Gaps = 8/213 (3%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
            E   H G +  + ++ D   + + G D    VW +          +   + +       
Sbjct: 45  HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104

Query: 338 HLSQLIPIDVDKEKID----KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
              +   +      I     + ++           +   V  L   P        S    
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164

Query: 394 LS-WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG 451
              +S     +      T    ++     +   S    +V  V F+  + +     S D 
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDS 223

Query: 452 KVRIWEVR-RCQVVDYTDIREIVSAVCYCPDGK 483
            V + +   +  V         + AV +  +  
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESS 256

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 19/227 (8%), Positives = 54/227 (23%), Gaps = 68/227 (29%)

Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI 345
            I    ++ D   +A    +  V ++                                  
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIY---------------------------------- 34

Query: 346 DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404
           +    K  +   L++ +                           +V  + W+ +   +++
Sbjct: 35  EKSGNKWVQVHELKEHNG--------------------------QVTGVDWAPDSNRIVT 68

Query: 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQ 462
              D+   +W +                +        ++  F  GS    + I    +  
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 463 VVDYTDIREI-----VSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504
                   +      V ++ + P+      G+    CR +     ++
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV 175

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 4/84 (4%)

Query: 383 EFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD 441
            F G        S           + DK                 H N V+ ++      
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK 338

Query: 442 N---YFISGSIDGKVRIWEVRRCQ 462
                F +  +DG + IW+VR  +
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY----LASGGEDGTVRVWKV 313
           KK S E S+         H+ S+  +     G+       + G DG + +W V
Sbjct: 306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 2e-12
 Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV----GIDRCLRVFSHNNYVTS 433
           + +   Q     + D+    +   LL +S D ++ +++          L+   + + +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
             F    D     G++ G++   ++    
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSP 90

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
           +   +    +  V  + +S     L +  +D  +  W +   + ++ F+  N  + V   
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301

Query: 438 PVDDNYFISGSIDGKVRIWEV 458
              DN     + D   +    
Sbjct: 302 C-SDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 30/276 (10%), Positives = 69/276 (25%), Gaps = 54/276 (19%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV------------IEHE------------ 317
           A +  I  +K       L     DG++ V+K             + ++            
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 318 ----------RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367
                                PS    T N  +  I             +          
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV--- 424
                   +  K L+         +    + +  L+    +  V+ +++ +         
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188

Query: 425 -FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV----------------RRCQVVDYT 467
                  +  VA  P +   +   SIDG+V +                        +  T
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248

Query: 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ 503
           ++   V+++ + P  K        G    ++++  +
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 15/111 (13%), Positives = 27/111 (24%), Gaps = 17/111 (15%)

Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----------------HNNYVTSVAFNP 438
              +      SS D  V +            S                    V S+ F+P
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT 489
               +  +   DG +  W ++  + +         S V          + T
Sbjct: 262 -RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 10/107 (9%), Positives = 26/107 (24%), Gaps = 8/107 (7%)

Query: 210 SRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR 269
             D  ++ ++      +       +     S    P    L        +    ++ + +
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285

Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316
               +       A       +K +     L     D T +    I+ 
Sbjct: 286 ----IKN----FAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQ 324

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 4e-12
 Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 25/245 (10%)

Query: 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINH 338
           + L  +  I + K   DG  L  GGE  T+ +W +         ++  + P+C    I+ 
Sbjct: 92  DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

Query: 339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP-----------------------PKVFR 375
            S++         I       ++                                 + + 
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211

Query: 376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
           L E    +    +S++  L +   G +L        V +  V      ++  H + V S+
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271

Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC 494
            F      +F+S   D  +  W       +  +     V +     D K  + G+     
Sbjct: 272 KFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330

Query: 495 RFYDI 499
             Y++
Sbjct: 331 TVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 11/129 (8%)

Query: 361 SSDLTCVVLPPKVFRLLEKPLHEFQ----GHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
              +  V  PP        P H  Q     H   V  ++ S     + +     V++W +
Sbjct: 20  DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDI 79

Query: 417 GIDRC------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR 470
                      L   + +NY+ S    P D    I G     + IW++         ++ 
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138

Query: 471 EIVSAVCYC 479
               A    
Sbjct: 139 SSAPACYAL 147

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314
                S+L+   S+D +Y+ +G  D    V++VI
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 31/267 (11%), Positives = 61/267 (22%), Gaps = 33/267 (12%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------------- 327
           L H   +  +  S   +++ +GG  G V+VW +            D              
Sbjct: 48  LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 328 -----------------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370
                                                         S    S  +   + 
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY 430
                                     +    L +   D TVR W +   R L+     + 
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226

Query: 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM 490
           + S+ + P    +   G     V +  V +            V ++ +   GK  +    
Sbjct: 227 IFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285

Query: 491 TGNCRFYDIK-GMQIFDLSTTAYLFAL 516
                 +    G  IF    ++ + + 
Sbjct: 286 DNLLNAWRTPYGASIFQSKESSSVLSC 312

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.4 bits (152), Expect = 2e-11
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGK 452
           W  +    +  AD T+R+W V   +C++ +           V      +   IS S+DG 
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319

Query: 453 VRIWEV 458
           +  +E+
Sbjct: 320 LNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 16/135 (11%)

Query: 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVD 440
             +    LS+                VR    G  +   V       ++ VT+V F+P+ 
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 441 D-NYFISGSIDGKVRIWEVR---------RCQVVDYTDIREIVSAVCYCPDGKGGIVGTM 490
              Y  SG   GKV +W                 ++  +   +S + +  +G+   V   
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 491 TGNCRFYDIKGMQIF 505
             +     I      
Sbjct: 136 GRDNFGVFISWDSGN 150

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 41/270 (15%), Positives = 68/270 (25%), Gaps = 48/270 (17%)

Query: 278 QEFLAHEGSILT-MKFS--LDGQYLASGGEDGTVRVWKV--------------------- 313
            +F  H  S++T +KFS     QYL SG E G V VW                       
Sbjct: 56  VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 115

Query: 314 ---------------IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
                                                         I+    K  +    
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175

Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
               D   VV                    S V D+ +S +      +     ++     
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235

Query: 419 DRCLRVFSHNNYVTSVAFN-----PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-- 471
                +    +    V         +D   F +   D  +R+W+V   + V    + +  
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295

Query: 472 -IVSAVCYCPDGKGGIV-GTMTGNCRFYDI 499
                V     G G I+  ++ G   FY++
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.9 bits (148), Expect = 4e-11
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFN 437
                GH+  +  LS S +G  L S+ A+  +  W +      RVF   H   +T +   
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
              D + +S      +++       V     +   +S+      
Sbjct: 65  SKGDLFTVSWDDH--LKVVPAGGSGVDSSKAVANKLSSQPLGLA 106

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.2 bits (115), Expect = 4e-07
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGK 452
              N  L + S D +V +W +       +    +H     +      ++   +S   D  
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291

Query: 453 VRIWEV 458
           ++ W V
Sbjct: 292 IKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.2 bits (115), Expect = 5e-07
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
           H  +I  +  S DG+ L S   +G +  W +
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDI 41

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
             AH  S +     L+   + S G+D  ++ W V
Sbjct: 264 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 381 LHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
           + +     S V  + W     ++S+  D  ++ W V
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 61.8 bits (148), Expect = 6e-11
 Identities = 19/199 (9%), Positives = 47/199 (23%), Gaps = 13/199 (6%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
                         F  D + L              +        +      S  +    
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV------LNFSFEVVSKPFVIPL 225

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
                 P  +    +         +D+     P  V     + +   +            
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285

Query: 398 KNGFLL-SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
           +       +     +  + V   +   V ++   +T +  +  D    +    DGK+  +
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSA-DRKTVMVRKDDGKIYTF 341

Query: 457 EVRR--CQVVDYTDIREIV 473
            + +   +    TD R +V
Sbjct: 342 PLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 4/37 (10%), Positives = 17/37 (45%)

Query: 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
            ++    + ++  ++ S D + +    +DG +  + +
Sbjct: 307 TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 14/222 (6%), Positives = 47/222 (21%), Gaps = 25/222 (11%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKV--IEHERLDGFDVQDTDPSCLYFTI 336
           +     I  ++   D +     G      + ++     + E+ +                
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK 98

Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
             +      ++    ++  K          ++    +        + F            
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH-------- 150

Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
                       + + ++ +   +     + N++  + AF+  D       S        
Sbjct: 151 ----GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSP 205

Query: 457 EVR--------RCQVVDYTDIREIVSAVCYCPDGKGGIVGTM 490
           +            +      I    +     P       G  
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLW-------QVGIDRCLRVFSHNNYVTSVAF 436
            + H +++  +S   + F +S S D  +++W       +   D+    F H + +  V  
Sbjct: 10  GKAHDADIFSVSACNS-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 437 ------NPVDDNYFISGSIDGKVRIWEVRR 460
                 +  +     + S  G +  + + R
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITR 98

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 25/229 (10%), Positives = 66/229 (28%), Gaps = 38/229 (16%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
           AH+  I ++       +  S   DG ++VW     +  +      +    ++ +  H   
Sbjct: 12  AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVD 67

Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVL------PPKVFRLLEKPLHEFQGHSSEVLDLS 395
           ++   ++++  +       S     +          K     +  L +          L 
Sbjct: 68  VLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 396 WSKNG------FLLSSSADKTVRLWQVGIDR-------------------CLRVFSHNNY 430
           W  +        L+++    T  +W+                             + + +
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
            TSV  +        +G  +G V+I E+   + +   + +  +      
Sbjct: 187 ATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 32/232 (13%)

Query: 283 HEGSILTMKFSLDG-----QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
            + S   +K+           L +    GT  +WK             +  P+       
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP---KVFRLLEKPLHEFQGHSSEVLDL 394
                         I +   +    +   V +            +  H    +S+ +  +
Sbjct: 178 ESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 395 SWSKNGFLLSSSAD------------------KTVRLWQVGIDRCLRVFSHNNYVTSVAF 436
            +S  G LL+ + D                   ++ +        L  F+H+++V S++F
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVV----DYTD-IREIVSAVCYCPDGK 483
           N        S   DGK+R W+V+  + +     + D I      +     G 
Sbjct: 298 ND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN 442
            +GH + V+     ++ ++++ + DK +R++     + L   S H+  V ++ +      
Sbjct: 8   LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG 65

Query: 443 YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG---IVGTMTGNCRFYDI 499
             +SGS D  VR+W++++       +            + K     + G+       + +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 500 KGMQIFDLSTTAYLFALLGH 519
                       + + L+ H
Sbjct: 126 PKESSVPDHGEEHDYPLVFH 145

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV 439
                H++     ++  +  +L S ++    ++ +   + +        + + SV F   
Sbjct: 276 KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG- 334

Query: 440 DDNYFISGSIDGKVRIW 456
                 +   DG+  + 
Sbjct: 335 -KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 19/225 (8%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H  S++T     +  Y+ +G +D  +RV+  I  + L      D     L +    +   
Sbjct: 11  HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI--- 66

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL 402
                          L   S    V +                     +  + +    ++
Sbjct: 67  ---------------LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 111

Query: 403 LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
           ++ S D T+ +W++  +  +      +    V   P ++ YF+         +  V    
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171

Query: 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL 507
            +  +   +    V      K   + +   +  +  I   +    
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 414 WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RCQVVDYTDIRE 471
                D   +   H+  ++++    V DN  +SGS + +  I+ +R  +    +     +
Sbjct: 267 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDAD 325

Query: 472 IVSAVCYCPDG 482
            + +V +    
Sbjct: 326 QIWSVNFKGKT 336

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.5 bits (134), Expect = 2e-09
 Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 15/128 (11%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
           ++ L    GH+  +  L+ +    L+S S D  +  W            H+N + S+  +
Sbjct: 3   DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDNS 55

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
                          +   +  +   +   +            DG   ++          
Sbjct: 56  K--------AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 107

Query: 498 DIKGMQIF 505
              G  I 
Sbjct: 108 SFTGDIIK 115

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.6 bits (129), Expect = 8e-09
 Identities = 9/79 (11%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPV 439
                 + +  +    +   + + S D  + ++ V    + ++  + H + V ++ +   
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET- 268

Query: 440 DDNYFISGSIDGKVRIWEV 458
             +  +S   D  ++ W V
Sbjct: 269 -PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
            K +     H   V +L W     L+SS AD  ++ W V
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (109), Expect = 3e-06
 Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM 290
           ++      G+   +  +  +  G     + ++ VK+  + + +L       AH+  +  +
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN------AHKDGVNNL 264

Query: 291 KFSLDGQYLASGGEDGTVRVWKVI 314
            +      L S G D  ++ W V+
Sbjct: 265 LWETPS-TLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 4/36 (11%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
           +    H   I  +  +     L SG  DG +  W  
Sbjct: 7   KTISGHNKGITALTVN----PLISGSYDGRIMEWSS 38

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.5 bits (132), Expect = 6e-09
 Identities = 17/187 (9%), Positives = 49/187 (26%), Gaps = 8/187 (4%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD-----VQDTDPSCLYFTIN 337
               +  M+ + DG    +G +   + V        L   +         D    +   +
Sbjct: 143 MPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
              +   +       D  +    +  L   +      +  +    EF   +        S
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD--LKTGKTHTQEFADLTELYFTGLRS 260

Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
                        +  + +   + ++  + ++    VAF+    +    G     + ++ 
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFN 319

Query: 458 VRRCQVV 464
               + V
Sbjct: 320 PDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 13/252 (5%), Positives = 52/252 (20%), Gaps = 25/252 (9%)

Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK--------------------- 312
                       S+ +   S DG+ + +                                
Sbjct: 78  ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137

Query: 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372
           V          +         +        + +   K     T +L   +        P 
Sbjct: 138 VRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY----TVALPLRNWNRKGYSAPD 193

Query: 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT 432
           V           +      +           ++          +   +       +    
Sbjct: 194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253

Query: 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG 492
                    +      +  ++  +++++ +++   ++      V +   G    +G    
Sbjct: 254 YFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313

Query: 493 NCRFYDIKGMQI 504
           +   ++   ++ 
Sbjct: 314 DLAVFNPDTLEK 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330
              + +   + F   G  L  GG    + V+     E++    +   D S
Sbjct: 288 ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMS 337

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKV 453
                 + S+SADKT+++W V   +  +            +          +S S +G +
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFI 305

Query: 454 RIWE 457
               
Sbjct: 306 NFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI 449
            + L  +  G  +      +V    VG      +++ H++  T    +P    Y  SG +
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDV 78

Query: 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480
            G VRIW+  +   +  T I      V    
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDIS 109

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 8e-05
 Identities = 24/236 (10%), Positives = 58/236 (24%), Gaps = 6/236 (2%)

Query: 269 RELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTD 328
             + SL   + +  H       K S  G Y ASG   G VR+W   +   +    +    
Sbjct: 43  VPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS 102

Query: 329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
                 + +  S+ I    +  +      L  +      +                    
Sbjct: 103 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI 162

Query: 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS 448
               D +              T       +         + + ++     +     + G+
Sbjct: 163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222

Query: 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI 504
             G      ++                  + PDG      +     + +++  +++
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGL------TWSPDGTKIASASADKTIKIWNVATLKV 272

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468
                  V  D  L+  +H+  V  + ++P D     S S D  ++IW V   +V     
Sbjct: 219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIP 277

Query: 469 I--REIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499
           +  R     +      +  +  +  G   F + 
Sbjct: 278 VGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 11/104 (10%), Positives = 31/104 (29%), Gaps = 7/104 (6%)

Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
             N F ++      + L      + ++V      V     +     Y +    D ++ + 
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMI 88

Query: 457 EVRRCQ------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC 494
           ++   +      +    + R + S+     + +  I G      
Sbjct: 89  DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ 132

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 432 TSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM 490
                +    N F ++    G++ + +    ++V   D    V        G+  +V   
Sbjct: 22  KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR 81

Query: 491 TGNCRFYDIKGMQ 503
                  D+   +
Sbjct: 82  DARIDMIDLWAKE 94

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 15/187 (8%), Positives = 50/187 (26%), Gaps = 10/187 (5%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP-----SCLYFTIN 337
               I  + ++ DG  L   G D  V   +             + +          +  +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
             S ++       + D   +   +     + +  +   +  +   E +         + +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR---EVRIMDVFYFSTAVN 249

Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
                   +    +  + +  +  ++     +   SV  +  D +    G   G +  ++
Sbjct: 250 PAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYD 307

Query: 458 VRRCQVV 464
               +  
Sbjct: 308 AETLEKK 314

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
           +    S  ++  S DG  +  GG  G +  +     E+    D+
Sbjct: 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 5/82 (6%), Positives = 21/82 (25%), Gaps = 3/82 (3%)

Query: 401 FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
           ++L+ +    + +         +V                P     + + +    +   +
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 458 VRRCQVVDYTDIREIVSAVCYC 479
           +   + +   D+      V   
Sbjct: 63  LVTGETLGRIDLSTPEERVKSL 84

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 14/127 (11%), Positives = 36/127 (28%), Gaps = 5/127 (3%)

Query: 380 PLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV--FSHNNYVTSVAFN 437
             HE  G  +     +         ++    +    +             + +  S A N
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
           P       +      +  +++ +   +    +     +V    DG    +G   G+   Y
Sbjct: 250 P---AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306

Query: 498 DIKGMQI 504
           D + ++ 
Sbjct: 307 DAETLEK 313

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 7e-07
 Identities = 20/190 (10%), Positives = 45/190 (23%), Gaps = 4/190 (2%)

Query: 277 GQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
               +             DG         +GT  +         D F +     S     
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 208

Query: 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395
           +   +    I          K L     LT             + +      + + + L 
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA--YHRALDRIYLL 266

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVR 454
             +       +A + V +        L  F   + + S+  +  +        + D  + 
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLY 326

Query: 455 IWEVRRCQVV 464
           I +    + +
Sbjct: 327 IHDAESGEEL 336

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 22/226 (9%), Positives = 58/226 (25%), Gaps = 20/226 (8%)

Query: 285 GSILTMKFSLDGQYLA----------SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYF 334
           G +     + DG ++A           G     V V+  +              P    F
Sbjct: 47  GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA----DIELPDAPRF 102

Query: 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394
            +     +  +  D + +   +     +     +      R+L+ P       ++     
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162

Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
              ++G L   +               +        +   A++       +  +  GK+ 
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEI--THTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIH 219

Query: 455 IWEV---RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
             ++       +     + E   A  + P G   +      +  + 
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.7 bits (107), Expect = 7e-06
 Identities = 11/185 (5%), Positives = 34/185 (18%), Gaps = 7/185 (3%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
               +      S      AS           V           Q+            +  
Sbjct: 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLV 226

Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401
                   +           + +       K                +    +  +    
Sbjct: 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286

Query: 402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY--FISGSIDGKVRIWEVR 459
               +A +        + +     S+ +   ++     D     + + +    + I++  
Sbjct: 287 RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345

Query: 460 RCQVV 464
             Q  
Sbjct: 346 SDQDQ 350

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 8/77 (10%), Positives = 22/77 (28%)

Query: 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
           ++S    + +  V  ++        +       +P     +++ +    V I +     V
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 464 VDYTDIREIVSAVCYCP 480
           +           V   P
Sbjct: 67  IATVPAGSSPQGVAVSP 83

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 7/56 (12%), Positives = 17/56 (30%)

Query: 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465
           TV +   G ++             +A  P     +++ S    V + +     +  
Sbjct: 225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 8/113 (7%)

Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
           +N F ++      + L          V      V     +     Y      DGKV + +
Sbjct: 31  ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMID 89

Query: 458 VR--RCQVVD----YTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKGMQ 503
           +       V      ++ R I ++     + K  I            D + ++
Sbjct: 90  LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 142

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 404 SSSADKTVRLWQV---GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           +S   + + +W +   G     +V      V  +  +P     ++    + +V  + +
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	519
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.98
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.9
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.84
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.77
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.65
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.62
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.59
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.55
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.49
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.36
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.34
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.1
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.02
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.98
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.75
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.72
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.69
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.69
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.68
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.61
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.61
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.57
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.55
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.51
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.45
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.07
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.04
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.02
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.89
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.79
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.69
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.54
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.09
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.64
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.55
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.58
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.57
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.25
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.98
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.61
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.56
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.35
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.22
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.16
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.92
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.91
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.8
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.79
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.47
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.42
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.47
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.94
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	89.8
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.93
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	88.66
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.61
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.61
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	87.49
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	87.0
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.28
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.88
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.46
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	82.67

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-32  Score=267.67  Aligned_cols=260  Identities=16%  Similarity=0.230  Sum_probs=200.3

Q ss_pred             ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      ..+.+.+|.+.|.+++|+|++++||+|+.||+|+||++.....       .+.+..|..+|.+++|+|++++|++|+.|+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~-------~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-------VHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-------EEEEECSCSCEEEEEECTTSSEEEEEETTC
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee-------EEEEecccccEEeeEeeccceeeeeecccc
Confidence            3446788999999999999999999999999999999875442       345788999999999999999999999999


Q ss_pred             cEEEEecccCeeec----eeeccCCCCceEEEeecC-------CCCeEEeeccCC-----------ce-------eeeee
Q 010037          307 TVRVWKVIEHERLD----GFDVQDTDPSCLYFTINH-------LSQLIPIDVDKE-----------KI-------DKTKS  357 (519)
Q Consensus       307 ~I~iWd~~~~~~~~----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----------~~-------~~~~~  357 (519)
                      .|++|+........    .+..+.............       ............           ..       .....
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence            99999986554322    222222111111111110       000000000000           00       01112


Q ss_pred             eccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEE
Q 010037          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTS  433 (519)
Q Consensus       358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~  433 (519)
                      +.+..++.+.+|+...    .+++..+.+|...|++++|+|++ +|++|+.|+.|++||++....+..+.   +...|++
T Consensus       200 ~~~~~d~~v~i~d~~~----~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         200 VSGACDASAKLWDVRE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEEETTTEEEEEETTT----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             EEeecCceEEEEECCC----CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            3455566677776554    35577889999999999999999 99999999999999999999888774   7778999


Q ss_pred             EEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      ++|+| ++++|++|+.||.|+|||+.+++.+ .+.+|...|++++|+|+|++|++|+.||.|+|||
T Consensus       276 ~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         276 VSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECC-CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999 9999999999999999999998887 5778999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=265.76  Aligned_cols=250  Identities=16%  Similarity=0.186  Sum_probs=203.1

Q ss_pred             eEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 010037          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (519)
Q Consensus       233 ~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd  312 (519)
                      .|...|.+++|+|+|++||+|+ ||.|+|||+.......  ........+|.+.|.+++|+|++++|++|+.||.|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~--~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc--eeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            4667888999999999999997 8999999997644221  112223457999999999999999999999999999999


Q ss_pred             cccCe--eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          313 VIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       313 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      +....  ....+..+...+..+.+.++.  ..              .+.++.+..+.+|+...    .+......+|...
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~--------------l~s~~~d~~i~~~~~~~----~~~~~~~~~~~~~  185 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDS--KV--------------CFSCCSDGNIAVWDLHN----QTLVRQFQGHTDG  185 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTS--SE--------------EEEEETTSCEEEEETTT----TEEEEEECCCSSC
T ss_pred             cccccccccccccccccccccccccccc--cc--------------ccccccccccccccccc----ccccccccccccc
Confidence            87543  344444444444444444322  11              12334445555665543    2345667889999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccC
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI  469 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~  469 (519)
                      |.+++|++++ .+++++.|+.|++||+++++.+..+.|...|++++|+| ++++|++|+.|+.|++||+++++......|
T Consensus       186 v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  264 (337)
T d1gxra_         186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLH  264 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEECCC
T ss_pred             cccccccccccccccccccccccccccccceeecccccccceEEEEEcc-cccccceecccccccccccccccccccccc
Confidence            9999999999 99999999999999999999999999999999999999 999999999999999999999999988999


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       470 ~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ...|++++|+|+|++|++|+.||.|++||+.+++.+.
T Consensus       265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~  301 (337)
T d1gxra_         265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            9999999999999999999999999999999887543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7e-31  Score=258.12  Aligned_cols=242  Identities=17%  Similarity=0.252  Sum_probs=194.3

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~  317 (519)
                      ...++++|+|+.||.+. ++.|.+|++....       ..+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++.
T Consensus        20 ~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~-------~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CCCCEECTTSSEEEEEE-TTEEEEEETTCSS-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             eEEEEEcCCCCEEEEEe-CCEEEEEECCCCc-------eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            34579999999999985 6679999987432       334578999999999999999999999999999999998876


Q ss_pred             ee--ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          318 RL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       318 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      ..  ..+..+...+.++.|.+.... ++...             ...+..+.+|+...    .++...+.+|...|++++
T Consensus        92 ~~~~~~~~~~~~~v~~v~~s~d~~~-l~~~~-------------~~~~~~~~v~~~~~----~~~~~~l~~h~~~v~~v~  153 (311)
T d1nr0a1          92 HILKTTIPVFSGPVKDISWDSESKR-IAAVG-------------EGRERFGHVFLFDT----GTSNGNLTGQARAMNSVD  153 (311)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCE-EEEEE-------------CCSSCSEEEEETTT----CCBCBCCCCCSSCEEEEE
T ss_pred             cccccccccccCccccccccccccc-ccccc-------------cccccccccccccc----cccccccccccccccccc
Confidence            54  345556666677777654321 11111             11122233333332    244567889999999999


Q ss_pred             EcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-------
Q 010037          396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-------  465 (519)
Q Consensus       396 ~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-------  465 (519)
                      |+|++  .|++|+.|+.|++||++++++...+. |...|+++.|+| ++++|++|+.|+.|++||+.++..+.       
T Consensus       154 ~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~  232 (311)
T d1nr0a1         154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL  232 (311)
T ss_dssp             ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred             ccccceeeecccccccccccccccccccccccccccccccccccCc-ccccccccccccccccccccccccccccccccc
Confidence            99988  58899999999999999999988886 899999999999 99999999999999999999877653       


Q ss_pred             -eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          466 -YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       466 -~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                       ..+|...|++++|+|+|++|++|+.||.|+|||++++++..
T Consensus       233 ~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence             23577899999999999999999999999999999998764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.2e-31  Score=260.72  Aligned_cols=239  Identities=16%  Similarity=0.225  Sum_probs=201.0

Q ss_pred             EeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      |.+.+.+++|+|++++|++|+.||.|++|++......     ....+..|...|.+++|+|++.+|++++.|+.|++|++
T Consensus        96 h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-----EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEEcCCCCEEEEeecccccccccccccccc-----cccccccccccccccccccccccccccccccccccccc
Confidence            4456778999999999999999999999998754332     22457789999999999999999999999999999999


Q ss_pred             ccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeE
Q 010037          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (519)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (519)
                      .+++.......+...+.++.+.+....                .+.++.++.+.+|+.....    .+. ...|...|.+
T Consensus       171 ~~~~~~~~~~~~~~~v~~l~~s~~~~~----------------~~~~~~d~~v~i~d~~~~~----~~~-~~~~~~~i~~  229 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGASCIDISNDGTK----------------LWTGGLDNTVRSWDLREGR----QLQ-QHDFTSQIFS  229 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSE----------------EEEEETTSEEEEEETTTTE----EEE-EEECSSCEEE
T ss_pred             ccccccccccccccccccccccccccc----------------cccccccccccccccccce----eec-ccccccceEE
Confidence            999888777776666666666544321                1223445566666654422    233 3358899999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCc
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI  472 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~  472 (519)
                      ++|+|++ +|++++.|+.|++||++++.......|...|++++|+| ++++|++|+.||.|++||+.+++.+....|...
T Consensus       230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  308 (337)
T d1gxra_         230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS  308 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             EEEcccccccceeccccccccccccccccccccccccccceEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEccCCCC
Confidence            9999999 99999999999999999999988888999999999999 999999999999999999999999988889999


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          473 VSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       473 V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      |++++|+|+|++|++|+.||.|+|||+
T Consensus       309 v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         309 VLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=1.5e-30  Score=255.79  Aligned_cols=245  Identities=17%  Similarity=0.198  Sum_probs=199.0

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC--CCcE
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE--DGTV  308 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~--Dg~I  308 (519)
                      +.+|.+.+.+++|+|+|++||+|+.||+|+||++........     ..+.+|.++|.+++|+|++++|++++.  +..+
T Consensus        54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~  128 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-----TTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  128 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE-----EEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc-----cccccccCccccccccccccccccccccccccc
Confidence            345667788899999999999999999999999986553322     347889999999999999999999986  4669


Q ss_pred             EEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      +||++.+++....+..+...+.++.|.+.....+               +.++.++.+.+|+.+..    +....+.+|.
T Consensus       129 ~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l---------------~sgs~d~~i~i~d~~~~----~~~~~~~~~~  189 (311)
T d1nr0a1         129 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI---------------ISGSDDNTVAIFEGPPF----KFKSTFGEHT  189 (311)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE---------------EEEETTSCEEEEETTTB----EEEEEECCCS
T ss_pred             cccccccccccccccccccccccccccccceeee---------------ccccccccccccccccc----cccccccccc
Confidence            9999999998888887777777777765543222               23445566777766543    4466778899


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (519)
Q Consensus       389 ~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~  459 (519)
                      ..|++++|+|++ +|++++.|+.|++||+.++..+..+.        |...|++++|+| ++++|++|+.||+|+|||++
T Consensus       190 ~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-CCCEEEEEeCCCeEEEEECC
Confidence            999999999999 99999999999999999998888773        788999999999 99999999999999999999


Q ss_pred             CCcEEe-eccCCC-ceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          460 RCQVVD-YTDIRE-IVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       460 ~~~~~~-~~~~~~-~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +++++. +..+.. ....+.+.+++++|++++.||.|++||+.
T Consensus       269 t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         269 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999885 333322 23344555667789999999999999973

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-30  Score=262.36  Aligned_cols=267  Identities=20%  Similarity=0.249  Sum_probs=193.1

Q ss_pred             eeEeecccceeecCCCCeEEeeecCCeEEEeeCCcccccccc-----------ccccceeecCCCCEEEEEEccCCCEEE
Q 010037          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-----------LYTGQEFLAHEGSILTMKFSLDGQYLA  300 (519)
Q Consensus       232 ~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~-----------~~~~~~l~~H~~~I~~l~fspdg~~La  300 (519)
                      ..|.+.|.+++|+|+|++||+|+ |+.|+||++........-           .........|...|++|+|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            35778899999999999999987 899999999765432110           011123456888999999999999999


Q ss_pred             EEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCe--------EEeeccCCcee------------------e
Q 010037          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL--------IPIDVDKEKID------------------K  354 (519)
Q Consensus       301 Sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------------------~  354 (519)
                      +|+.||.|++|+...++....+..+...+.++.+.......+        ..+........                  .
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  217 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence            999999999999999998888877777666666654432211        11111111100                  0


Q ss_pred             eeeeccCCCeeEEEeCCcccccc---ccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE--------
Q 010037          355 TKSLRKSSDLTCVVLPPKVFRLL---EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--------  422 (519)
Q Consensus       355 ~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~--------  422 (519)
                      ...+.++.++.+.+|+.......   ........+|...|.+++|+|++ +|++++.|+.|++||+.++...        
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  297 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  297 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccc
Confidence            11223445555666655433221   12233446789999999999999 9999999999999999765432        


Q ss_pred             ----E-EecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEEEE------eeCCCEEEEEec
Q 010037          423 ----R-VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY------CPDGKGGIVGTM  490 (519)
Q Consensus       423 ----~-~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~------spdg~~l~sgs~  490 (519)
                          . ...|...|++++|+| ++++|++|+.||.|++||+++++++ .+.+|.+.|+++++      +|++++|++|+.
T Consensus       298 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~  376 (388)
T d1erja_         298 GTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG  376 (388)
T ss_dssp             -CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             cceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeC
Confidence                1 223889999999999 8999999999999999999999887 57889999999975      578999999999


Q ss_pred             CCeEEEEECC
Q 010037          491 TGNCRFYDIK  500 (519)
Q Consensus       491 dg~v~iwdl~  500 (519)
                      ||.|+||+++
T Consensus       377 Dg~I~iW~~~  386 (388)
T d1erja_         377 DCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEEEE
T ss_pred             CCEEEEEeee
Confidence            9999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.5e-29  Score=254.26  Aligned_cols=247  Identities=15%  Similarity=0.152  Sum_probs=186.8

Q ss_pred             eecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~  314 (519)
                      .+++.|++|+|+|++||+|+.+|.|+||+......     .....+.+|.++|++|+|+|++++|++|+.|++|+|||+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-----~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-----EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            36788999999999999999999999999864332     2335688999999999999999999999999999999998


Q ss_pred             cCeeeceee--ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          315 EHERLDGFD--VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       315 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      ++.....+.  .+...+.++.|.++...  +              +.++.++.+.+|.................|...|.
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~--l--------------~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPNEKK--F--------------AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSE--E--------------EEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             cccccccccccccccccccccccccccc--c--------------eeecccCcceeeeeecccccccccccccccccccc
Confidence            876554443  34455666666554321  1              12223333444432221111122344567899999


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCC------------------eEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCe
Q 010037          393 DLSWSKNG-FLLSSSADKTVRLWQVGID------------------RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGK  452 (519)
Q Consensus       393 ~l~~sp~~-~L~sgs~Dg~V~lWdl~~~------------------~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (519)
                      +++|+|++ +|++|+.|++|++|++...                  ..+... .|...|++++|+| ++++|++++.|+.
T Consensus       146 ~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~  224 (371)
T d1k8kc_         146 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDST  224 (371)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTE
T ss_pred             cccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCc
Confidence            99999999 9999999999999997643                  233333 3889999999999 8999999999999


Q ss_pred             EEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEE--ECCCCee
Q 010037          453 VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY--DIKGMQI  504 (519)
Q Consensus       453 V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iw--dl~~~~l  504 (519)
                      |++||+.+++.+ .+..|..+|++++|+|+|++|++|. |+.+++|  +...+++
T Consensus       225 i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~  278 (371)
T d1k8kc_         225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKL  278 (371)
T ss_dssp             EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEE
T ss_pred             ceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceE
Confidence            999999998877 5777888999999999998777655 6766555  4444443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8e-29  Score=238.94  Aligned_cols=250  Identities=20%  Similarity=0.304  Sum_probs=209.8

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+.+|.+.|.+++|+|++++||+|+.||+|+||++....       ..+++.+|...|.+++|+|++.++++++.++.+.
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~-------~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~   84 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIK   84 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------EEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence            477899999999999999999999999999999987543       3346789999999999999999999999999999


Q ss_pred             EEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCC
Q 010037          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (519)
                      +|+.........+..+.....++.+.+....                .+..+.++.+.+|+...    .+.+..+.+|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~d~~~~~~~~~~----~~~~~~~~~~~~  144 (317)
T d1vyhc1          85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDH----------------IVSASRDKTIKMWEVQT----GYCVKTFTGHRE  144 (317)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSE----------------EEEEETTSEEEEEETTT----CCEEEEEECCSS
T ss_pred             cccccccccccccccccccceeeeccCCCce----------------EEeeccCcceeEeeccc----ceeeeEEccCCC
Confidence            9999888776666665555555555443321                12334455666665543    345677889999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeC-------------------CCCEEEEEe
Q 010037          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-------------------DDNYFISGS  448 (519)
Q Consensus       390 ~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~-------------------d~~~l~sgs  448 (519)
                      .+.+++|+|++ +|++++.|+.|++|++.+++.+..+. |...+.+++|+|.                   .+.++++|+
T Consensus       145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (317)
T d1vyhc1         145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  224 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             cceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence            99999999999 99999999999999999999988886 8889999999873                   245799999


Q ss_pred             CCCeEEEEEcCCCcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          449 IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       449 ~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .|+.|++||+++++.+ .+..|...|++++|+|++++|++|+.||.|+|||+.+++++.
T Consensus       225 ~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  283 (317)
T d1vyhc1         225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK  283 (317)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            9999999999999877 577899999999999999999999999999999999877543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.8e-28  Score=232.81  Aligned_cols=266  Identities=17%  Similarity=0.261  Sum_probs=214.3

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeecccceeecCCCCeEEeeecCCeE
Q 010037          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV  259 (519)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I  259 (519)
                      ++.|..+..++++.     +|.+...+                    ....+..|...+.+++++|++.+++++..++.+
T Consensus        29 ~~~l~s~s~Dg~i~-----iWd~~~~~--------------------~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~   83 (317)
T d1vyhc1          29 FSVMVSASEDATIK-----VWDYETGD--------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTI   83 (317)
T ss_dssp             SSEEEEEESSSCEE-----EEETTTCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             CCEEEEEeCCCeEE-----EEECCCCC--------------------EEEEEeCCCCcEEEEeeeccccccccccccccc
Confidence            56677777777776     78654321                    111234456677889999999999999999999


Q ss_pred             EEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCC
Q 010037          260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL  339 (519)
Q Consensus       260 ~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (519)
                      .+|+.......       ..+.+|...+.++.|+|++++|++++.|+.+++||+.+++....+..+.....++.+.+...
T Consensus        84 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (317)
T d1vyhc1          84 KLWDFQGFECI-------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT  156 (317)
T ss_dssp             CEEETTSSCEE-------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred             ccccccccccc-------cccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCC
Confidence            99998754432       23567999999999999999999999999999999999998888877776666666554331


Q ss_pred             CCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-------------------
Q 010037          340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-------------------  400 (519)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-------------------  400 (519)
                        .              .+.++.++.+.+|+...    .+.+..+.+|...+.+++|+|++                   
T Consensus       157 --~--------------l~~~~~d~~v~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (317)
T d1vyhc1         157 --L--------------IASCSNDQTVRVWVVAT----KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP  216 (317)
T ss_dssp             --E--------------EEEEETTSCEEEEETTT----CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred             --E--------------EEEEeCCCeEEEEeecc----ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccC
Confidence              1              12334455566665543    24466777888888888887642                   


Q ss_pred             --eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE-eeccCCCceEEE
Q 010037          401 --FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAV  476 (519)
Q Consensus       401 --~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v  476 (519)
                        .+++++.|+.|++||+++++++..+. |...|++++|+| ++++|++|+.||.|+|||+++++++ .+..|...|+++
T Consensus       217 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~  295 (317)
T d1vyhc1         217 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  295 (317)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             CceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence              58899999999999999999998886 899999999999 9999999999999999999998877 577899999999


Q ss_pred             EEeeCCCEEEEEecCCeEEEEE
Q 010037          477 CYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       477 ~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      +|+|++++|++|+.||.|+|||
T Consensus       296 ~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         296 DFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EECSSSSCEEEEETTSEEEEEC
T ss_pred             EEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.3e-27  Score=231.32  Aligned_cols=242  Identities=12%  Similarity=0.076  Sum_probs=180.1

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcE
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I  308 (519)
                      +.+.+|.+.|.+++|+|++++|++|+.||+|+|||+........      ...+|...|++++|+|++++ ++++.|+.+
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~------~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v   78 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV------FPDVHATMITGIKTTSKGDL-FTVSWDDHL   78 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC------SSCSCSSCEEEEEECTTSCE-EEEETTTEE
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE------EcCCCCCcEEEEEeecccee-ecccceeeE
Confidence            45678889999999999999999999999999999875443211      12469999999999999975 566789999


Q ss_pred             EEEecccCeeece---eeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          309 RVWKVIEHERLDG---FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       309 ~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      ++|++........   .......+..+.+.++..  ++...               ....+.+|+...      ...  .
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~---------------~~~~i~~~~~~~------~~~--~  133 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA---------------CYKHIAIYSHGK------LTE--V  133 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE---------------ESSEEEEEETTE------EEE--E
T ss_pred             EEeccCCccccccccccccccccccccccccccc--ccccc---------------cccccccccccc------ccc--c
Confidence            9999865432111   111222233333333221  11111               112233333211      111  1


Q ss_pred             ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--EecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~--~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      .....+.+++|+|++ +|++++.|+.|++||+++++...  ...|...|++++|+| ++.+|++++.|+.|++||+.++.
T Consensus       134 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~  212 (299)
T d1nr0a2         134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNF  212 (299)
T ss_dssp             ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            234567899999999 99999999999999999887654  445999999999999 99999999999999999998876


Q ss_pred             EE----eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          463 VV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       463 ~~----~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      ..    .+..|...|++++|+|+|++|++|+.||.|++||+.++.
T Consensus       213 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         213 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             cccccccccccccccccccccccccceEEEcCCCEEEEEECCCCC
Confidence            55    355688999999999999999999999999999998754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.7e-27  Score=229.36  Aligned_cols=261  Identities=18%  Similarity=0.269  Sum_probs=184.0

Q ss_pred             cCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCc
Q 010037          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (519)
Q Consensus       228 ~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~  307 (519)
                      ..++.+|.+.+.. ++++++++||+|+.||+|+|||+....       ..+++.+|.++|++|+|+|+ .+|++|+.||+
T Consensus         5 ~~tL~GH~~~vit-c~~~~~~~l~tgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~   75 (355)
T d1nexb2           5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHG-GILVSGSTDRT   75 (355)
T ss_dssp             EEEEECCSSSCEE-EEEEETTEEEEEETTTEEEEEETTTTE-------EEEEEECCSSCEEEEEEETT-TEEEEEETTCC
T ss_pred             cEEECCcCCCcEE-EEEECCCEEEEEeCCCeEEEEECCCCc-------EEEEEECCCCCEEEEEEcCC-CEEEEEecccc
Confidence            3456778776643 356678999999999999999987543       33568899999999999985 58999999999


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCC----------CCeEEeeccCCcee------------------------
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHL----------SQLIPIDVDKEKID------------------------  353 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~------------------------  353 (519)
                      |++|++..........................          ..+..+........                        
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred             cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence            99999988876655544333322222211111          11111111110000                        


Q ss_pred             ---------------eeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECC
Q 010037          354 ---------------KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG  417 (519)
Q Consensus       354 ---------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~  417 (519)
                                     ....+.+..+..+..|+...    .+.+....++...+.++.|+|++ ++++++.|++|++||+.
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  231 (355)
T d1nexb2         156 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  231 (355)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             eeeeccccccccccccceeeeecccceeeeeeccc----ccceeeeeccccccccccccccceeeecccccceEEeeecc
Confidence                           00111222233344443332    34466677888999999999999 99999999999999999


Q ss_pred             CCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEE-EEEeeCCCEEEEEecCCeEE
Q 010037          418 IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA-VCYCPDGKGGIVGTMTGNCR  495 (519)
Q Consensus       418 ~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~-v~~spdg~~l~sgs~dg~v~  495 (519)
                      ++.++..+. |...|++++|+|   ++|++|+.||.|++||+++...... .|...+.+ .++++++++|++| .||.|+
T Consensus       232 ~~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g-~d~~i~  306 (355)
T d1nexb2         232 NGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAITTFYVSDNILVSG-SENQFN  306 (355)
T ss_dssp             TCCEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEE-EECTTCCCCCEEEECSSEEEEE-ETTEEE
T ss_pred             cccccccccccccccccccccc---ceeeeeecccccccccccccceecc-cccCCceEEEEEcCCCCEEEEE-eCCEEE
Confidence            999998886 999999999865   6999999999999999998876533 33444444 4567777766655 589999


Q ss_pred             EEECCCCeeee
Q 010037          496 FYDIKGMQIFD  506 (519)
Q Consensus       496 iwdl~~~~l~~  506 (519)
                      |||+++++++.
T Consensus       307 vwd~~tg~~~~  317 (355)
T d1nexb2         307 IYNLRSGKLVH  317 (355)
T ss_dssp             EEETTTCCBCC
T ss_pred             EEECCCCCEEE
Confidence            99999998764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.3e-26  Score=228.41  Aligned_cols=246  Identities=18%  Similarity=0.218  Sum_probs=180.2

Q ss_pred             ccceeecCCCCeEEeeecCC-eEEEeeCCccccccccccccceeecC-CCCEEEEEEcc--CCCEEEEEeCCCcEEEEec
Q 010037          238 HGSATLKPGDHELTLGQRMR-RVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSL--DGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg-~I~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fsp--dg~~LaSgs~Dg~I~iWd~  313 (519)
                      ..+++|+|+++.|+.++.+. .|+.|+.....     ......+.+| ...|++++|+|  ++.+||+|+.||+|+|||+
T Consensus        20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~-----~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-----VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             CCCCEEETTTTEEEEEETTEEEEEECCSSCCS-----SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC-----ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence            34689999999999886554 35666644222     1223456677 46899999998  6789999999999999999


Q ss_pred             ccCeeeceee--------ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          314 IEHERLDGFD--------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       314 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      ..+.....+.        .+...+.++.|.++....+.              .....+....++....    ++.+..+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~--------------~~~~~~~~~~~~~~~~----~~~~~~~~  156 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV--------------VGEGRDNFGVFISWDS----GNSLGEVS  156 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE--------------EECCSSCSEEEEETTT----CCEEEECC
T ss_pred             cCCcceeeeecccccccccccCcEEEEEECCCCCccce--------------eeccccceEEEEeecc----cccceeee
Confidence            7765444332        23333444444433221111              1112222333333221    34577788


Q ss_pred             ccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 010037          386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~  459 (519)
                      +|...|.+++|+|++  .+++++.|+.|++||+...+....+.    |...|++++|+|..+.+|++|+.|+.|++||++
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence            999999999999988  67889999999999999888776663    778899999999557899999999999999999


Q ss_pred             CCcEEe-eccCCCceEEEEEe---eCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          460 RCQVVD-YTDIREIVSAVCYC---PDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       460 ~~~~~~-~~~~~~~V~~v~~s---pdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +++.+. +..|...+..+.|+   |+|++|++++.||.|+|||+++++++.
T Consensus       237 ~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            998874 55666666665555   789999999999999999999988754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.3e-27  Score=237.41  Aligned_cols=269  Identities=12%  Similarity=0.087  Sum_probs=176.8

Q ss_pred             eeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEc------c-CCCEEEEEe
Q 010037          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS------L-DGQYLASGG  303 (519)
Q Consensus       231 ~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs------p-dg~~LaSgs  303 (519)
                      ..+|...|.+++++  ++++++|+.|++|+||+.......... ........|...+..+...      . ++.++++++
T Consensus        10 ~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_          10 GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPK-DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             SSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGG-GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCccc-ceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            34566777777765  469999999999999997654432211 1112234455554433321      1 335788999


Q ss_pred             CCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEE--eeccCCceeeeeeeccCCCeeEEEeCCccccc-----
Q 010037          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP--IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-----  376 (519)
Q Consensus       304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-----  376 (519)
                      .||.|++|++........+.........   ..........  +...............+.++.+.+|+......     
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLD---SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSC---TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             CCCcEEEEEccCCCceeeeeccccceee---eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            9999999998655432222111000000   0000001111  11111111122233445566666665321110     


Q ss_pred             --c-------ccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-------CCCcEEEEEEeeCC
Q 010037          377 --L-------EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVD  440 (519)
Q Consensus       377 --~-------~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-------h~~~V~~v~fsp~d  440 (519)
                        .       .........+...+++++|+|+++|++|+.|++|+|||+.+++++..+.       |...|++|+|+| +
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-d  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-Q  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-S
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-c
Confidence              0       0111122345667999999999999999999999999999999887663       889999999999 9


Q ss_pred             CCEEEEEeCCC---eEEEEEcCCCcEEee--------------ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          441 DNYFISGSIDG---KVRIWEVRRCQVVDY--------------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       441 ~~~l~sgs~Dg---~V~iwd~~~~~~~~~--------------~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +++|++|+.|+   .|++||+.+++.+..              .+|...|++++|+|||++|++|+.||+|+|||+.+++
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            99999999987   499999998876532              3689999999999999999999999999999999987


Q ss_pred             eee
Q 010037          504 IFD  506 (519)
Q Consensus       504 l~~  506 (519)
                      +++
T Consensus       323 ~~~  325 (393)
T d1sq9a_         323 RIT  325 (393)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-26  Score=229.25  Aligned_cols=246  Identities=17%  Similarity=0.234  Sum_probs=183.4

Q ss_pred             ecccceeecC--CCCeEEeeecCCeEEEeeCCccccccc-cccccceeecCCCCEEEEEEccCCCEEEEEeC--CCcEEE
Q 010037          236 DRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGE--DGTVRV  310 (519)
Q Consensus       236 ~~~~~~~~sp--~g~~lasgs~dg~I~vw~~~~~~~~~~-~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~--Dg~I~i  310 (519)
                      ..+.+++|+|  ++.+||+|+.||+|+||++........ .......+..|.++|.+++|++++++|++++.  ++.+++
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~  143 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF  143 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred             CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence            3466789998  567999999999999999875443221 11222346779999999999999999988764  678999


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      |++.+++.+..+..+...+.++.|.+.....+               +.++.++.+.+|+....... .......+|...
T Consensus       144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~---------------~~~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~  207 (325)
T d1pgua1         144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMRS---------------MTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSF  207 (325)
T ss_dssp             EETTTCCEEEECCSCSSCEEEEEECSSSSCEE---------------EEEETTTEEEEEETTTBEEE-EEECSSSCTTCC
T ss_pred             EeecccccceeeeecccccccccccccccceE---------------EEeecccccccccccccccc-eecccccCCCCc
Confidence            99999998888887777777777766543322               23344556666665443321 122334568889


Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEe---eCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN---PVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       391 V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fs---p~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      |.+++|+|++  +|++++.|+.|++||+++++++..+. |...+.++.|+   | ++.+|++++.|+.|+|||+++++++
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCCEE
Confidence            9999999974  89999999999999999999999886 66666555554   4 6899999999999999999999887


Q ss_pred             e-eccCCC--ceEE--EEEeeCCCEEEEEecCCeEEEEEC
Q 010037          465 D-YTDIRE--IVSA--VCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       465 ~-~~~~~~--~V~~--v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                      . +..+..  .+..  +.+.++ .+|++++.||.|+|||+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         287 QKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            4 333333  2334  444444 37899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=8.6e-26  Score=220.79  Aligned_cols=229  Identities=19%  Similarity=0.342  Sum_probs=172.9

Q ss_pred             ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCce---
Q 010037          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI---  352 (519)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  352 (519)
                      ..++|+||.++|++|+|+|++++||||+.||+|+|||+.+++.+..+..+...+.++.|.+.....+ ....+....   
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~d~~i~~~~  125 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA-CGGLDNICSIYN  125 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEE-EEETTCCEEEEE
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeee-eecccceeeccc
Confidence            3457899999999999999999999999999999999999999999998888888888876543222 111111000   


Q ss_pred             --------eeeeeeccCCCee-EEEe-----------CCccc---cccccceeEeeccCCCeeEEEEcCCC-eEEEEeCC
Q 010037          353 --------DKTKSLRKSSDLT-CVVL-----------PPKVF---RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD  408 (519)
Q Consensus       353 --------~~~~~~~~s~~~~-~~~~-----------~~~~~---~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D  408 (519)
                              .....+.+..... ....           +....   ............+...+....+.+.+ ++++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence                    0000000000000 0000           00000   00112234445677788999999988 99999999


Q ss_pred             CcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe---eccCCCceEEEEEeeCCCE
Q 010037          409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDIREIVSAVCYCPDGKG  484 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~---~~~~~~~V~~v~~spdg~~  484 (519)
                      +.|++||+++++++..+. |...|++++|+| ++++|++|+.||.|++||++....+.   ...+...|++++|+|+|++
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCE
Confidence            999999999999999886 899999999999 99999999999999999999887663   3456678999999999999


Q ss_pred             EEEEecCCeEEEEECCCCeeee
Q 010037          485 GIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       485 l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      |++|+.||.|++||+.+++++.
T Consensus       285 l~~g~~dg~i~iwd~~~~~~~~  306 (340)
T d1tbga_         285 LLAGYDDFNCNVWDALKADRAG  306 (340)
T ss_dssp             EEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEECCCEEEEEECCCCcEEE
Confidence            9999999999999998876644

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.1e-26  Score=221.67  Aligned_cols=250  Identities=12%  Similarity=0.142  Sum_probs=174.1

Q ss_pred             cccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC
Q 010037          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (519)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D  305 (519)
                      +.++.+.+|...+.+++|+|    |++|+.||+|++|++...            ..+|...|.++.|++++ .+++++.|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~------------~~~h~~~V~~~~~~~~~-~~~s~s~D   66 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM------------HQDHSNLIVSLDNSKAQ-EYSSISWD   66 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE------------ECCCCSCEEEEECCSTT-CCEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC------------CCCCCCCEEEEEecCCC-eEEEEeec
Confidence            34567888999999999988    999999999999997632            35799999999999765 57899999


Q ss_pred             CcEEEEecccCeeec---eeeccCCCCceEEEeecCCCCeEEeeccCCceee----------------eeeeccCCCeeE
Q 010037          306 GTVRVWKVIEHERLD---GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK----------------TKSLRKSSDLTC  366 (519)
Q Consensus       306 g~I~iWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~s~~~~~  366 (519)
                      ++|++|++...+...   .+......  .... ......+..+.........                ...+.......+
T Consensus        67 ~~v~~w~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          67 DTLKVNGITKHEFGSQPKVASANNDG--FTAV-LTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             TEEEETTEEEEECSSCEEEEEECSSS--EEEE-EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred             cccccccccccccccceeeeeeccCC--ceEE-EeecccceeeeccceeeeeeccccceeeeeeccCcceeeecccccee
Confidence            999999986544211   11111110  0111 1111111111111111100                011112222234


Q ss_pred             EEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--cCCCcEEEEEEeeC----
Q 010037          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV----  439 (519)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~h~~~V~~v~fsp~----  439 (519)
                      .+|+......   .......|...+++++|+|++ +|++|+.|+.|++||+.++..+...  .|...|++++|+|.    
T Consensus       144 ~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         144 QVFKLSDLEV---SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             EEEETTEEEE---EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             eeeeccccce---eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence            4443322111   111223477899999999999 9999999999999999999876543  38999999999872    


Q ss_pred             -----CCCEEEEEeCCCeEEEEEcCC-CcEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEEC
Q 010037          440 -----DDNYFISGSIDGKVRIWEVRR-CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (519)
Q Consensus       440 -----d~~~l~sgs~Dg~V~iwd~~~-~~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl  499 (519)
                           ++.+|++|+.|++|+|||+++ .+.+ .+.+|...|++++|+|++ .|++++.||.|++|++
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                 457899999999999999977 4444 456899999999999987 5889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.3e-25  Score=214.48  Aligned_cols=259  Identities=19%  Similarity=0.384  Sum_probs=183.2

Q ss_pred             ccCCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC
Q 010037          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (519)
Q Consensus       227 ~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg  306 (519)
                      ....+++|.+.|.+ +++++|++||+|+.||+|+|||+....       ..+++.+|.+.|.+++|+|+  +|++|+.|+
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-------~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-------EEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            33457778777754 578889999999999999999987543       23467899999999999874  999999999


Q ss_pred             cEEEEecccCeeeceeeccCCCCceEEEeec------CCCCeEEeeccCCcee----------------eeeeeccCCCe
Q 010037          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTIN------HLSQLIPIDVDKEKID----------------KTKSLRKSSDL  364 (519)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----------------~~~~~~~s~~~  364 (519)
                      .+++|+.........................      ....+...........                ....+.++.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            9999999877665444433322221111110      0111111111111110                01123344455


Q ss_pred             eEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCC
Q 010037          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN  442 (519)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~  442 (519)
                      .+.+|+...    .+.+..+.+|...+..+.+  ++ +|++++.|++|++||++.++++..+. |...+.++.+++   +
T Consensus       158 ~i~~~d~~~----~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~  228 (342)
T d2ovrb2         158 MVKVWDPET----ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---N  228 (342)
T ss_dssp             CEEEEEGGG----TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---T
T ss_pred             eEEEeeccc----ceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---C
Confidence            555555443    3446677888887777665  45 99999999999999999999988886 888999888765   6


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEe-e---ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          443 YFISGSIDGKVRIWEVRRCQVVD-Y---TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       443 ~l~sgs~Dg~V~iwd~~~~~~~~-~---~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      +|++|+.|+.|++||+...+... +   ..|...+.++.+  +++++++|+.||.|+|||++++++++
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~  294 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIR  294 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEE
Confidence            99999999999999999887663 2   234555665555  56799999999999999999987654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.4e-25  Score=225.05  Aligned_cols=249  Identities=13%  Similarity=0.142  Sum_probs=184.5

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+.+|.+.|.+++|+|++++|++|+.|++|+||++......     ....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus        46 ~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~-----~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~  120 (371)
T d1k8kc_          46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK-----PTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS  120 (371)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-----EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc-----cccccccccccccccccccccccceeecccCcce
Confidence            34567788889999999999999999999999998754322     2234567999999999999999999999999999


Q ss_pred             EEecccCeeecee----eccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccc---------
Q 010037          310 VWKVIEHERLDGF----DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL---------  376 (519)
Q Consensus       310 iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---------  376 (519)
                      +|++.........    ..+...+.++.|.++..  .              .+.++.++.+.+|+......         
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~--------------l~s~s~D~~v~v~~~~~~~~~~~~~~~~~  184 (371)
T d1k8kc_         121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV--L--------------LAAGSCDFKCRIFSAYIKEVEERPAPTPW  184 (371)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS--E--------------EEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred             eeeeeccccccccccccccccccccccccccccc--c--------------eeccccCcEEEEEeeccCccccccccccc
Confidence            9998766543222    22333444555544321  1              12334455555554432211         


Q ss_pred             -----cccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC
Q 010037          377 -----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI  449 (519)
Q Consensus       377 -----~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~  449 (519)
                           ....+....+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |..+|++++|+| ++.+|++|+ 
T Consensus       185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-  262 (371)
T d1k8kc_         185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-  262 (371)
T ss_dssp             BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-
T ss_pred             cccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-
Confidence                 123456677899999999999999 99999999999999999999988886 888999999999 888777655 


Q ss_pred             CCeEEEEEcCC--CcEE----------------------------------------eeccCCCceEEEEEeeCC----C
Q 010037          450 DGKVRIWEVRR--CQVV----------------------------------------DYTDIREIVSAVCYCPDG----K  483 (519)
Q Consensus       450 Dg~V~iwd~~~--~~~~----------------------------------------~~~~~~~~V~~v~~spdg----~  483 (519)
                      |+.+++|....  ....                                        ....|.+.|+++++.|.+    .
T Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~  342 (371)
T d1k8kc_         263 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS  342 (371)
T ss_dssp             TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred             CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceE
Confidence            77777765432  1110                                        001377889999999865    3


Q ss_pred             EEEEEecCCeEEEEECCC
Q 010037          484 GGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       484 ~l~sgs~dg~v~iwdl~~  501 (519)
                      .|++++.||.|+|||+++
T Consensus       343 ~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         343 QFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             EEEEEETTSEEEEEEHHH
T ss_pred             EEEEEcCCCeEEEEeCCc
Confidence            589999999999999865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.9e-25  Score=208.00  Aligned_cols=238  Identities=22%  Similarity=0.393  Sum_probs=171.3

Q ss_pred             eecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeece
Q 010037          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG  321 (519)
Q Consensus       242 ~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~  321 (519)
                      ++++++++||+|+.||+|+|||+....       ..+++.+|.++|++|+|  ++++|++|+.|+.|++|++..+.....
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT   90 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccc
Confidence            467799999999999999999987543       33568899999999987  678999999999999999988776544


Q ss_pred             eeccCCCCceE------EEeecCCCCeEEeeccCCc--------------e-----eeeeeeccCCCeeEEEeCCccccc
Q 010037          322 FDVQDTDPSCL------YFTINHLSQLIPIDVDKEK--------------I-----DKTKSLRKSSDLTCVVLPPKVFRL  376 (519)
Q Consensus       322 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--------------~-----~~~~~~~~s~~~~~~~~~~~~~~~  376 (519)
                      ...........      .........+..+......              +     ........+.++.+.+|+...   
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~---  167 (293)
T d1p22a2          91 LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST---  167 (293)
T ss_dssp             ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTT---
T ss_pred             ccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCC---
Confidence            43322211110      0111111111111111100              0     011123344566666666654   


Q ss_pred             cccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEE
Q 010037          377 LEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (519)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~i  455 (519)
                       .+++..+.+|...+..+.+++. .|++++.|++|++||+++.+.+..+. +...+.+  +.+ ++.+|++|+.||.|++
T Consensus       168 -~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~-~~~~l~sg~~dg~i~i  242 (293)
T d1p22a2         168 -CEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRF-DNKRIVSGAYDGKIKV  242 (293)
T ss_dssp             -CCEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EEC-CSSEEEEEETTSCEEE
T ss_pred             -CcEEEEEcccccccccccCCCC-eEEEecCCCEEEEEecccceeeeeecccceeeee--ccc-cceEEEEEcCCCEEEE
Confidence             3457778899999999888654 89999999999999999999988886 6666765  445 7789999999999999


Q ss_pred             EEcCCC---------cEE-eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          456 WEVRRC---------QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       456 wd~~~~---------~~~-~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      ||+...         ..+ .+..|...|++++|  ++++|++|+.||+|+|||
T Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            997532         233 56789999999988  567899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.7e-25  Score=217.45  Aligned_cols=268  Identities=12%  Similarity=0.059  Sum_probs=186.4

Q ss_pred             CCeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEEeCCCc
Q 010037          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGT  307 (519)
Q Consensus       229 ~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~  307 (519)
                      .....|.+.|.+++|+|++++||+|+.||+|+||++.......    ......+|.++|.+++|+|++ .+|++|+.||.
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~----~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce----EEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            3456688899999999999999999999999999987543221    112334799999999999864 58999999999


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCc---------------------------------eee
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK---------------------------------IDK  354 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~  354 (519)
                      |++|++....................+.......++........                                 ...
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            99999988776665554444443333333222222221111100                                 000


Q ss_pred             eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE---------EE
Q 010037          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC---------LR  423 (519)
Q Consensus       355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~---------~~  423 (519)
                      ...+.++.++.+.+|+......... ......+...+.+..+.+..  .+++++.|+.+.+|++.....         ..
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNG-TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCC-EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             CceeeecCCCcEEEEecccCcccce-eeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            1123344555666665544332221 22233455566777776654  899999999999999764321         11


Q ss_pred             Ee-------cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEE
Q 010037          424 VF-------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF  496 (519)
Q Consensus       424 ~~-------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~i  496 (519)
                      ..       .|...|++|+|+| ++++|++|+.||+|+|||+++++.+........+..++|+|+|++|++|+.|+.+++
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~  318 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKT  318 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHH
T ss_pred             eeeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEE
Confidence            11       2667899999999 999999999999999999999998865555556778899999999999999999888


Q ss_pred             EECCCC
Q 010037          497 YDIKGM  502 (519)
Q Consensus       497 wdl~~~  502 (519)
                      |.....
T Consensus       319 ~~~~~~  324 (342)
T d1yfqa_         319 NAAIDQ  324 (342)
T ss_dssp             CSSSCT
T ss_pred             eeeeCC
Confidence            876543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=1.1e-23  Score=203.46  Aligned_cols=277  Identities=14%  Similarity=0.140  Sum_probs=186.5

Q ss_pred             hhhhhhcccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeecccceee
Q 010037          167 EIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATL  243 (519)
Q Consensus       167 ~~~~~~~l~~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  243 (519)
                      ||...  |..+..   ++.|..+..++++.     +|.+...+..  .           .      ....|...+.+++|
T Consensus        10 GH~~~--V~~l~~s~dg~~l~s~s~Dg~v~-----vWd~~~~~~~--~-----------~------~~~~h~~~v~~v~~   63 (299)
T d1nr0a2          10 GHNKA--ITALSSSADGKTLFSADAEGHIN-----SWDISTGISN--R-----------V------FPDVHATMITGIKT   63 (299)
T ss_dssp             CCSSC--EEEEEECTTSSEEEEEETTSCEE-----EEETTTCCEE--E-----------C------SSCSCSSCEEEEEE
T ss_pred             CCCCC--cEEEEECCCCCEEEEEcCCCeEE-----EEECCCCcEE--E-----------E------EcCCCCCcEEEEEe
Confidence            44443  555544   66777777777776     7765332100  0           0      01234566778999


Q ss_pred             cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceee
Q 010037          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (519)
Q Consensus       244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~  323 (519)
                      +|++.++ +++.|+.|++|+.........    ......|...+.+++|+|+++++++++ ++.+++|+......   ..
T Consensus        64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~---~~  134 (299)
T d1nr0a2          64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSS----KAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTE---VP  134 (299)
T ss_dssp             CTTSCEE-EEETTTEEEEECSSSSSSCTT----SCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEE---EE
T ss_pred             eccceee-cccceeeEEEeccCCcccccc----ccccccccccccccccccccccccccc-cccccccccccccc---cc
Confidence            9998755 556789999999875432211    122456788999999999999777665 56899998543221   11


Q ss_pred             ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE
Q 010037          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (519)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L  402 (519)
                       ......++.+.++.  .              ..+.++.++.+.+|+......   .......|...|++++|+|++ +|
T Consensus       135 -~~~~~~~~~~s~~~--~--------------~l~~g~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l  194 (299)
T d1nr0a2         135 -ISYNSSCVALSNDK--Q--------------FVAVGGQDSKVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNGAFL  194 (299)
T ss_dssp             -CSSCEEEEEECTTS--C--------------EEEEEETTSEEEEEEEETTEE---EEEEEEECSSCEEEEEECTTSSEE
T ss_pred             -cccccccccccccc--c--------------ccccccccccccccccccccc---cccccccccccccccccccccccc
Confidence             11223344443322  1              112334455666665432211   112345689999999999999 99


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEe----cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE---eecc-CCCceE
Q 010037          403 LSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYTD-IREIVS  474 (519)
Q Consensus       403 ~sgs~Dg~V~lWdl~~~~~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~-~~~~V~  474 (519)
                      ++++.|+.|++||+.++..+...    .|...|++++|+| ++.+|++|+.||.|+|||++++...   .... +...|.
T Consensus       195 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  273 (299)
T d1nr0a2         195 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN  273 (299)
T ss_dssp             EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence            99999999999999887665443    2889999999999 9999999999999999999876432   2233 345566


Q ss_pred             EEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          475 AVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       475 ~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      +++| +++++|++|+.||.|++||+.
T Consensus       274 ~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         274 SVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             EEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            6655 667899999999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=7e-23  Score=204.73  Aligned_cols=243  Identities=21%  Similarity=0.324  Sum_probs=177.6

Q ss_pred             EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCc
Q 010037          251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS  330 (519)
Q Consensus       251 asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~  330 (519)
                      +.+..++.+.+|+........  ... ....+|.+.|+||+|+|||++||+|+ |++|+|||+.+++.+..+..+.....
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~--~~l-~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREID--VEL-HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEE--EEE-EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred             cccCCCCcEEEeCCCCCccee--eee-EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence            345667888899865433211  111 22346999999999999999999987 89999999999988776654332211


Q ss_pred             e-----EEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEE
Q 010037          331 C-----LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS  404 (519)
Q Consensus       331 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~s  404 (519)
                      .     ......+...+..+.+....   ...+.++.++.+.+|+...    .+.+..+.+|...|.+++|++++ .+++
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~---~~l~s~~~dg~v~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~~  180 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDG---KFLATGAEDRLIRIWDIEN----RKIVMILQGHEQDIYSLDYFPSGDKLVS  180 (388)
T ss_dssp             -----------CCCCBEEEEEECTTS---SEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccCCCCCEEEEEECCCC---Ccceecccccccccccccc----cccccccccccccccccccccccccccc
Confidence            1     11111222223333332221   1234566777788887654    34567788999999999999999 9999


Q ss_pred             EeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--------eccCCCceEEE
Q 010037          405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------YTDIREIVSAV  476 (519)
Q Consensus       405 gs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--------~~~~~~~V~~v  476 (519)
                      ++.++.|++||+.+........+.....++.+.|.++++|++|+.|+.|++||+.++..+.        ...|...|+++
T Consensus       181 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  260 (388)
T d1erja_         181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV  260 (388)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred             cccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEE
Confidence            9999999999999999998888888888888888789999999999999999999887653        24578899999


Q ss_pred             EEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          477 CYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       477 ~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      +|+|++++|++|+.||.|++||+.+++.
T Consensus       261 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         261 VFTRDGQSVVSGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             EECCCCCEEEEEECCCcEEEEeccCCcc
Confidence            9999999999999999999999986643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6.4e-23  Score=200.61  Aligned_cols=254  Identities=20%  Similarity=0.217  Sum_probs=166.6

Q ss_pred             CeeeEeecccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 010037          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (519)
Q Consensus       230 ~~~~~~~~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~  309 (519)
                      .+.+|...|.+++|+|+ .+|++|+.||.|++|+..........     ....+...+..+.+.+++.++++++.|+.|+
T Consensus        48 ~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  121 (355)
T d1nexb2          48 QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVF-----EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH  121 (355)
T ss_dssp             EEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEE-----CCCSSCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred             EEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccc-----ccccccccccccccccccceeeeecCCCcEE
Confidence            34567788889999986 58999999999999998865433221     1123344566778889999999999999999


Q ss_pred             EEecccCeeeceeeccCC----------CCceE-----------EEeec--------CCCCeEEeeccCCceee------
Q 010037          310 VWKVIEHERLDGFDVQDT----------DPSCL-----------YFTIN--------HLSQLIPIDVDKEKIDK------  354 (519)
Q Consensus       310 iWd~~~~~~~~~~~~~~~----------~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~~~------  354 (519)
                      +|++.+............          .....           .....        ....+..+.........      
T Consensus       122 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  201 (355)
T d1nexb2         122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  201 (355)
T ss_dssp             EEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccc
Confidence            999977654322211100          00000           01111        11111111111111100      


Q ss_pred             ------------eeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEE
Q 010037          355 ------------TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCL  422 (519)
Q Consensus       355 ------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~  422 (519)
                                  .....++.++.+.+|+...    ...+..+.+|...|.+++++++ +|++++.|++|++||+++....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~----~~~~~~~~~h~~~v~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         202 DRIYSTIYDHERKRCISASMDTTIRIWDLEN----GELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTT----CCEEEEECCCSSCCCEEEECSS-EEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccccceeeecccccceEEeeeccc----cccccccccccccccccccccc-eeeeeeccccccccccccccee
Confidence                        0112333445555555443    3557788999999999999764 9999999999999999988766


Q ss_pred             EEecCCCcEEEE-EEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe--eccCCCceEEEEEeeCCCEEEEEecCCeEEEEE
Q 010037          423 RVFSHNNYVTSV-AFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (519)
Q Consensus       423 ~~~~h~~~V~~v-~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwd  498 (519)
                      .... ...+.++ .++| ++.++++|+ |++|+|||+++++++.  ...|...|++++|+|+ .++++++.||.++||-
T Consensus       277 ~~~~-~~~~~~~~~~~~-~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         277 FSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEE-CTTCCCCCEEEE-CSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             cccc-cCCceEEEEEcC-CCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            5554 4445555 4566 788777765 8999999999998873  5678899999999987 4678889999866653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1e-22  Score=205.55  Aligned_cols=183  Identities=19%  Similarity=0.295  Sum_probs=139.4

Q ss_pred             CCCeEEeeecCCeEEEeeCCcccccccccc-----------ccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecc
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLY-----------TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~-----------~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~  314 (519)
                      .+.++++++.||.|++|++...........           .......+...+.+++|+|++ +||+|+.||+|+|||+.
T Consensus       135 ~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~  213 (393)
T d1sq9a_         135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS  213 (393)
T ss_dssp             -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred             cccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec
Confidence            356889999999999999854322111000           011123456678999999998 89999999999999999


Q ss_pred             cCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEE
Q 010037          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (519)
                      +++.+..+..                                                        ...+.+|...|+++
T Consensus       214 ~~~~~~~~~~--------------------------------------------------------~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         214 TLRPLYNFES--------------------------------------------------------QHSMINNSNSIRSV  237 (393)
T ss_dssp             TTEEEEEEEC--------------------------------------------------------CC---CCCCCEEEE
T ss_pred             cccccccccc--------------------------------------------------------ccccccccceEEEc
Confidence            8876544321                                                        33467899999999


Q ss_pred             EEcCCC-eEEEEeCCCc---EEEEECCCCeEEEEe--------------cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 010037          395 SWSKNG-FLLSSSADKT---VRLWQVGIDRCLRVF--------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (519)
Q Consensus       395 ~~sp~~-~L~sgs~Dg~---V~lWdl~~~~~~~~~--------------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw  456 (519)
                      +|+|++ +|++|+.|++   |++||+.+++++..+              .|...|++|+|+| ++++|++|+.|++|+||
T Consensus       238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEE
T ss_pred             ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEE
Confidence            999999 9999999875   999999999888876              3889999999999 99999999999999999


Q ss_pred             EcCCCcEE-eeccCCCceE----EEEEeeCCCEEE
Q 010037          457 EVRRCQVV-DYTDIREIVS----AVCYCPDGKGGI  486 (519)
Q Consensus       457 d~~~~~~~-~~~~~~~~V~----~v~~spdg~~l~  486 (519)
                      |+.+++++ .+.+|.+.|.    .++|+|+|..++
T Consensus       317 d~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         317 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             ECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence            99999887 4666665543    345555554443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.1e-22  Score=191.20  Aligned_cols=261  Identities=20%  Similarity=0.293  Sum_probs=181.3

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCCeeeEeecccceeecCCCCeEEeeecCCeE
Q 010037          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV  259 (519)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~sp~g~~lasgs~dg~I  259 (519)
                      |++|..+..++++.     +|.+...+                    ....+.+|...+.+++|+|+  +|++|+.|+.+
T Consensus        27 g~~l~sgs~Dg~i~-----vWd~~~~~--------------------~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~   79 (342)
T d2ovrb2          27 GNRIVSGSDDNTLK-----VWSAVTGK--------------------CLRTLVGHTGGVWSSQMRDN--IIISGSTDRTL   79 (342)
T ss_dssp             TTEEEEEETTSCEE-----EEETTTCC--------------------EEEECCCCSSCEEEEEEETT--EEEEEETTSCE
T ss_pred             CCEEEEEeCCCeEE-----EEECCCCC--------------------EEEEEeCCCCCEEEEEeCCC--ccccceecccc
Confidence            55666666676666     77654321                    11223456667777888874  89999999999


Q ss_pred             EEeeCCccccccccccccceeecCCCCEE--------------------------------------EEEEccCCCEEEE
Q 010037          260 RVHPVKKQSRELSSLYTGQEFLAHEGSIL--------------------------------------TMKFSLDGQYLAS  301 (519)
Q Consensus       260 ~vw~~~~~~~~~~~~~~~~~l~~H~~~I~--------------------------------------~l~fspdg~~LaS  301 (519)
                      ++|+.........       ...+...+.                                      ...+.+...++++
T Consensus        80 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d2ovrb2          80 KVWNAETGECIHT-------LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS  152 (342)
T ss_dssp             EEEETTTTEEEEE-------ECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEE
T ss_pred             cccccccccceec-------ccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeee
Confidence            9998875432211       011111111                                      1223334556677


Q ss_pred             EeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccce
Q 010037          302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (519)
Q Consensus       302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (519)
                      ++.|+.|++||......+..+..+.....  .+..+                ....+.++.++.+.+|+...    .+++
T Consensus       153 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~----------------~~~l~s~~~dg~i~~~d~~~----~~~~  210 (342)
T d2ovrb2         153 GAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFD----------------GIHVVSGSLDTSIRVWDVET----GNCI  210 (342)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEE--EEEEC----------------SSEEEEEETTSCEEEEETTT----CCEE
T ss_pred             ecCCCeEEEeecccceeeEEEcCcccccc--cccCC----------------CCEEEEEeCCCeEEEeeccc----ceee
Confidence            77777777777776666555544332211  11111                11234556677788887654    3457


Q ss_pred             eEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 010037          382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (519)
Q Consensus       382 ~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd  457 (519)
                      ..+.+|...+.+++++++ +|++++.|+.|++||+...+....+.    |...+.++.++   ++++++|+.||+|+|||
T Consensus       211 ~~~~~~~~~v~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         211 HTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWD  286 (342)
T ss_dssp             EEECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEE
T ss_pred             eEecccccceeEEecCCC-EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEE
Confidence            788899999999998765 99999999999999999998887774    66777777775   47999999999999999


Q ss_pred             cCCCcEEe-e-----ccCCCceEEEEEeeCCCEEEEEecCCe----EEEEECC
Q 010037          458 VRRCQVVD-Y-----TDIREIVSAVCYCPDGKGGIVGTMTGN----CRFYDIK  500 (519)
Q Consensus       458 ~~~~~~~~-~-----~~~~~~V~~v~~spdg~~l~sgs~dg~----v~iwdl~  500 (519)
                      +++++++. +     ..|...|++++|+|++.+|++|+.||+    |++||+.
T Consensus       287 ~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            99998773 2     356778999999999999999999985    9999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=4.4e-21  Score=188.87  Aligned_cols=190  Identities=9%  Similarity=0.083  Sum_probs=162.1

Q ss_pred             eeecC-CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC--cEEEEecccCe
Q 010037          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHE  317 (519)
Q Consensus       241 ~~~sp-~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg--~I~iWd~~~~~  317 (519)
                      -.|+| ||+++|+++ .|.|+||+.......         -.+|...|.+++|+|||++|++++.+.  .|++||+.+++
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~---------~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~   77 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL---------KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK   77 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEE---------ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCcEE---------EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc
Confidence            46999 999999876 589999998754321         126899999999999999998877653  79999997765


Q ss_pred             eeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      .                                                               ..+..|...|.+++|+
T Consensus        78 ~---------------------------------------------------------------~~~~~~~~~v~~~~~s   94 (360)
T d1k32a3          78 A---------------------------------------------------------------EKFEENLGNVFAMGVD   94 (360)
T ss_dssp             E---------------------------------------------------------------EECCCCCCSEEEEEEC
T ss_pred             E---------------------------------------------------------------EEeeCCCceEEeeeec
Confidence            2                                                               2345688999999999


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe----------CCCeEEEEEcCCCcEEe
Q 010037          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS----------IDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       398 p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs----------~Dg~V~iwd~~~~~~~~  465 (519)
                      |++ +|++++.++.+++|++.++++...+. |...+.+++|+| ++++|+.+.          .++.+++||+.+++...
T Consensus        95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3          95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence            999 99999999999999999999888876 788899999999 999998643          34579999999999888


Q ss_pred             eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      ...+...+..++|+|||++|++++.++.+++|+.....+
T Consensus       174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~  212 (360)
T d1k32a3         174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  212 (360)
T ss_dssp             CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             ecccccccccccccCCCCEEEEEeCCCceEcccccccce
Confidence            888888999999999999999999999999999876543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.9e-21  Score=186.15  Aligned_cols=229  Identities=16%  Similarity=0.090  Sum_probs=158.4

Q ss_pred             ceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeecee---eccCCCCceEEEeecCCCCeEEeeccCCc---
Q 010037          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF---DVQDTDPSCLYFTINHLSQLIPIDVDKEK---  351 (519)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  351 (519)
                      +..++|++.|++|+|+|++++||+|+.||+|+|||+.++.....+   ..+...+.++.|.+.....++....+...   
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            446789999999999999999999999999999999776543322   24667788888877655444443322110   


Q ss_pred             ------ee-------------------eeeeeccCCCeeEEEeCCccccccccceeEeecc--CCCeeEEEEcCCC-eEE
Q 010037          352 ------ID-------------------KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH--SSEVLDLSWSKNG-FLL  403 (519)
Q Consensus       352 ------~~-------------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~-~L~  403 (519)
                            ..                   ....+..+.+..+.+|+.+..............+  ......+.+.+.+ .++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI  164 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence                  00                   0111233344555555544333222222223332  2234455666666 999


Q ss_pred             EEeCCCcEEEEECCCCeEEE----EecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE---------------
Q 010037          404 SSSADKTVRLWQVGIDRCLR----VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---------------  464 (519)
Q Consensus       404 sgs~Dg~V~lWdl~~~~~~~----~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~---------------  464 (519)
                      +++.|+.|++||+.......    ...+...+.++.+.|.++..+++++.||.+.+|++......               
T Consensus       165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T d1yfqa_         165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence            99999999999998764332    22356677888887768899999999999999998653211               


Q ss_pred             -eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeee
Q 010037          465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       465 -~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                       ....|...|++++|+|++++|++|+.||.|+|||+.+++.+.
T Consensus       245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence             123456679999999999999999999999999999887653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=1.1e-20  Score=185.90  Aligned_cols=249  Identities=8%  Similarity=-0.022  Sum_probs=179.6

Q ss_pred             EeecccceeecCCCCeEEeeecCC--eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 010037          234 IIDRHGSATLKPGDHELTLGQRMR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (519)
Q Consensus       234 ~~~~~~~~~~sp~g~~lasgs~dg--~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iW  311 (519)
                      |...+.+++|+|||++|++++.+.  .|++|+...+..        +.+..|...|.+++|+|+|++|++++.++.+++|
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  112 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA--------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV  112 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE--------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE--------EEeeCCCceEEeeeecccccccceeccccccccc
Confidence            345677899999999998866553  799999876442        2356799999999999999999999999999999


Q ss_pred             ecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      ++.+++....+..+......+.|.++....++.......      ...+.....+.+|+...     .....+..|...+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~------~~~~~~~~~~~v~d~~~-----~~~~~~~~~~~~~  181 (360)
T d1k32a3         113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG------ETDGYVMQAIHVYDMEG-----RKIFAATTENSHD  181 (360)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS------TTCSCCEEEEEEEETTT-----TEEEECSCSSSBE
T ss_pred             cccccceeeeeecccccccchhhccceeeeeeecccccc------ceeeccccceeeecccc-----Cceeeeccccccc
Confidence            999999888888888788888888776443332211111      12233444555555443     2344455677889


Q ss_pred             eEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-------EEEec-C-----------------------------------
Q 010037          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-------LRVFS-H-----------------------------------  427 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~-------~~~~~-h-----------------------------------  427 (519)
                      ..++|+|+| +|++++.++.+++|+......       ...+. +                                   
T Consensus       182 ~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T d1k32a3         182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV  261 (360)
T ss_dssp             EEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred             ccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeeccc
Confidence            999999999 999999999999998654321       11110 0                                   


Q ss_pred             -CCcEEEEEEeeCCC-------------CEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCe
Q 010037          428 -NNYVTSVAFNPVDD-------------NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN  493 (519)
Q Consensus       428 -~~~V~~v~fsp~d~-------------~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~  493 (519)
                       ......+...+ ++             .++++++.++.|++||+.+++...+   .+.|.+++|+|||++|++++.||.
T Consensus       262 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~v~~~~~SpDG~~l~~~~~Dg~  337 (360)
T d1k32a3         262 DPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMVRKDDGK  337 (360)
T ss_dssp             CCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EEEEEEEEECTTSCEEEEEETTSC
T ss_pred             CcCceeEeeecC-CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cCCcCEEEECCCCCEEEEEECCCe
Confidence             11222333332 11             2345566788999999999876544   345899999999999999999999


Q ss_pred             EEEEECCCCeee
Q 010037          494 CRFYDIKGMQIF  505 (519)
Q Consensus       494 v~iwdl~~~~l~  505 (519)
                      |++||+.+++-.
T Consensus       338 i~v~d~~~~~~~  349 (360)
T d1k32a3         338 IYTFPLEKPEDE  349 (360)
T ss_dssp             EEEEESSCTTSC
T ss_pred             EEEEECCCCCcc
Confidence            999999877543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=2.2e-20  Score=190.51  Aligned_cols=273  Identities=8%  Similarity=0.028  Sum_probs=167.7

Q ss_pred             cccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeccc
Q 010037          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIE  315 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaS-gs~Dg~I~iWd~~~  315 (519)
                      .+..++|+|||+++++++.|+.|++||+........  ...+...+|.+.+.+++|+|||++|++ +..++.+++||..+
T Consensus        63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~--~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE--EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            345689999999999999999999999986553221  111223467777888999999998755 45889999999999


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (519)
                      +.....+..+........+........+....+..  ........  ...+..+.....   ........++...+..++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~--~~~~~~~~--~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~  213 (426)
T d1hzua2         141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP--EFIVNVKE--TGKVLLVNYKDI---DNLTVTSIGAAPFLADGG  213 (426)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS--EEEEEETT--TTEEEEEECSSS---SSCEEEEEECCSSEEEEE
T ss_pred             cceeEEeeccCCCccceeecCCCceeEEEECCCCC--EEEEecCC--CCeEEEEEeccc---cceeeEEeccCCccEeee
Confidence            98877666544433333332222111111111111  01111111  111111111100   011122234555566666


Q ss_pred             EcCCC-eEEEE-eCCCcEEEEECCCCe-----------------------------------------------------
Q 010037          396 WSKNG-FLLSS-SADKTVRLWQVGIDR-----------------------------------------------------  420 (519)
Q Consensus       396 ~sp~~-~L~sg-s~Dg~V~lWdl~~~~-----------------------------------------------------  420 (519)
                      |+|++ +++++ ..+..+.+|+..+++                                                     
T Consensus       214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~  293 (426)
T d1hzua2         214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  293 (426)
T ss_dssp             ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred             ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence            66666 33333 333445555544333                                                     


Q ss_pred             -EEEEec-CCCcEEEEEEeeCCCCEEEE-------EeCCCeEEEEEcCCCcEEe----------eccCCCceEEEEEeeC
Q 010037          421 -CLRVFS-HNNYVTSVAFNPVDDNYFIS-------GSIDGKVRIWEVRRCQVVD----------YTDIREIVSAVCYCPD  481 (519)
Q Consensus       421 -~~~~~~-h~~~V~~v~fsp~d~~~l~s-------gs~Dg~V~iwd~~~~~~~~----------~~~~~~~V~~v~~spd  481 (519)
                       ....+. |...+..++|+| ++.+|++       ++.|++|+|||+.+++...          ...+...|.+++|+||
T Consensus       294 ~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred             eEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence             333333 667788999999 9999994       5568899999999876442          2245667999999999


Q ss_pred             CCEEEEE-----ecCCeEEEEECCCCeeeeccccceeEEecCC
Q 010037          482 GKGGIVG-----TMTGNCRFYDIKGMQIFDLSTTAYLFALLGH  519 (519)
Q Consensus       482 g~~l~sg-----s~dg~v~iwdl~~~~l~~~~~~~~~~~l~GH  519 (519)
                      |++++++     +.+|.|+|||.+++++++.-...++.+..||
T Consensus       373 Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~~~tp~Gk  415 (426)
T d1hzua2         373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGK  415 (426)
T ss_dssp             SSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEE
T ss_pred             CCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCCccCCCce
Confidence            9987553     3578899999999999877666556555554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3e-19  Score=169.13  Aligned_cols=229  Identities=19%  Similarity=0.306  Sum_probs=158.4

Q ss_pred             eeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCC--------
Q 010037          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE--------  350 (519)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  350 (519)
                      ....|...|+|+.|  ||++||||+.||+|+|||+.+++++..+..+...+.++.+.   ...++....+..        
T Consensus        10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSS
T ss_pred             ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeeccccccccccccccc
Confidence            34568889998765  79999999999999999999999999998888777766552   122222221111        


Q ss_pred             -ceeee----------------eeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEE
Q 010037          351 -KIDKT----------------KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRL  413 (519)
Q Consensus       351 -~~~~~----------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~l  413 (519)
                       .....                ..+.......+.+|+...... ......+..|...|.++.+.+. .+++++.|+.|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d~~i~~  162 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKV  162 (293)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-CEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEE
T ss_pred             ccccccccccccccccccccccceeecccccceeEeecccccc-ccccccccccccccccceeccc-ccccccCCCceee
Confidence             00000                001122222233332221111 1224456678888988887665 7888999999999


Q ss_pred             EECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEEEeeCCCEEEEEecC
Q 010037          414 WQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMT  491 (519)
Q Consensus       414 Wdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~sgs~d  491 (519)
                      ||+++++++..+. +...|..+.++   +.++++++.||+|++||+++.+.+. ...+...+..  +.+++.+|++|+.|
T Consensus       163 ~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~d  237 (293)
T d1p22a2         163 WNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYD  237 (293)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETT
T ss_pred             ecCCCCcEEEEEcccccccccccCC---CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCC
Confidence            9999999988886 77788887775   4689999999999999999988774 5556666654  66788999999999


Q ss_pred             CeEEEEECCCCeeee-ccccceeEEecCC
Q 010037          492 GNCRFYDIKGMQIFD-LSTTAYLFALLGH  519 (519)
Q Consensus       492 g~v~iwdl~~~~l~~-~~~~~~~~~l~GH  519 (519)
                      |.|++||+.+..... ......+..+.||
T Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~H  266 (293)
T d1p22a2         238 GKIKVWDLVAALDPRAPAGTLCLRTLVEH  266 (293)
T ss_dssp             SCEEEEEHHHHTSTTSCTTTTEEEEECCC
T ss_pred             CEEEEEECCCCccccccCCceeeEEecCC
Confidence            999999986543322 2223345555555

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1e-19  Score=174.09  Aligned_cols=206  Identities=14%  Similarity=0.216  Sum_probs=138.0

Q ss_pred             cceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCc-eee-
Q 010037          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK-IDK-  354 (519)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-  354 (519)
                      .+++.+|.++|++|+|+|    |+||+.||+|++||+.++..     .+...+.++.+...  ..++....+... +.. 
T Consensus         6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~-----~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKA--QEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC-----CCCSCEEEEECCST--TCCEEEETTTEEEETTE
T ss_pred             eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC-----CCCCCEEEEEecCC--CeEEEEeeccccccccc
Confidence            357899999999999987    99999999999999876542     23333444443322  233332222110 000 


Q ss_pred             --------eeeeccCCC---------eeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCC-CcEEEEE
Q 010037          355 --------TKSLRKSSD---------LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD-KTVRLWQ  415 (519)
Q Consensus       355 --------~~~~~~s~~---------~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~D-g~V~lWd  415 (519)
                              ...+....+         ..+.++....    ...+..+. +...+  .++++++ .+++++.+ +.|++|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~  147 (287)
T d1pgua2          75 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT----GDIIKSVR-LNSPG--SAVSLSQNYVAVGLEEGNTIQVFK  147 (287)
T ss_dssp             EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTT----CCEEEEEE-CSSCE--EEEEECSSEEEEEETTTSCEEEEE
T ss_pred             cccccccceeeeeeccCCceEEEeecccceeeeccc----eeeeeecc-cccee--eeeeccCcceeeeccccceeeeee
Confidence                    000001111         1111111111    12233333 22333  3455666 66666665 5799999


Q ss_pred             CCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCceEEEEEeeC----------
Q 010037          416 VGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPD----------  481 (519)
Q Consensus       416 l~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~spd----------  481 (519)
                      +........+.  |...+++++|+| ++.+|++|+.||.|++||+.+++..  .+..|...|++++|+|+          
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~  226 (287)
T d1pgua2         148 LSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE  226 (287)
T ss_dssp             TTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred             ccccceeeeeeeccCCceeEEEecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCC
Confidence            98777666654  788999999999 9999999999999999999998876  36788999999999874          


Q ss_pred             CCEEEEEecCCeEEEEECCC
Q 010037          482 GKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       482 g~~l~sgs~dg~v~iwdl~~  501 (519)
                      +.+|++|+.||.|+|||+.+
T Consensus       227 ~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         227 EDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             CCEEEEEETTSCEEEEESSC
T ss_pred             CCeeEeecCCCeEEEEECCC
Confidence            46899999999999999975

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.79  E-value=1.4e-16  Score=152.09  Aligned_cols=238  Identities=11%  Similarity=0.115  Sum_probs=169.2

Q ss_pred             cceeecCCCCeE-EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCCcEEEEecccC
Q 010037          239 GSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEH  316 (519)
Q Consensus       239 ~~~~~sp~g~~l-asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~I~iWd~~~~  316 (519)
                      ..++|+|+|++| +++..++.|++||+.....       ...+..|. .+..+.|++++.+++ ++..++.+.+|+..++
T Consensus        35 ~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (301)
T d1l0qa2          35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (301)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eEEEEeCCCCEEEEEECCCCEEEEEECCCCce-------eeeeeccc-cccccccccccccccccccccceeeecccccc
Confidence            458999999987 4677899999999875442       23455554 468999999998655 4566789999999998


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      +....+..... ..++.+.++....+.               ....+....+++....    ..+..+. +...+..+++
T Consensus       107 ~~~~~~~~~~~-~~~~~~~~dg~~~~~---------------~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~  165 (301)
T d1l0qa2         107 TVAGTVKTGKS-PLGLALSPDGKKLYV---------------TNNGDKTVSVINTVTK----AVINTVS-VGRSPKGIAV  165 (301)
T ss_dssp             EEEEEEECSSS-EEEEEECTTSSEEEE---------------EETTTTEEEEEETTTT----EEEEEEE-CCSSEEEEEE
T ss_pred             eeeeecccccc-ceEEEeecCCCeeee---------------eeccccceeeeecccc----ceeeecc-cCCCceEEEe
Confidence            87776654432 333444333322111               1122223333333221    1222333 4456788999


Q ss_pred             cCCC-eEEEEe-CCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCCcEEeeccCCC
Q 010037          397 SKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVDYTDIRE  471 (519)
Q Consensus       397 sp~~-~L~sgs-~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~~~~~~~~~~~~~~  471 (519)
                      +|++ .+++++ .++.+.+|+.........+.....+..++|++ ++..++.+..   ++.|++||+.+++++.......
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~  244 (301)
T d1l0qa2         166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP  244 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS
T ss_pred             eccccceeeecccccccccccccceeeeecccccCCcceeeccc-cccccccccccceeeeeeeeecCCCeEEEEEcCCC
Confidence            9998 666555 45778899999888888888888899999999 7887765543   4689999999999887666667


Q ss_pred             ceEEEEEeeCCCEE-EEEecCCeEEEEECCCCeeee
Q 010037          472 IVSAVCYCPDGKGG-IVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       472 ~V~~v~~spdg~~l-~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      .+.+++|+|||++| ++++.++.|++||+++++++.
T Consensus       245 ~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         245 DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA  280 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            78999999999987 567779999999999998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.5e-18  Score=177.39  Aligned_cols=271  Identities=7%  Similarity=-0.068  Sum_probs=170.9

Q ss_pred             ccceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccC
Q 010037          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEH  316 (519)
Q Consensus       238 ~~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~  316 (519)
                      +..++|+|||+++++++.||.|++||+........  ...+...+|.+.+.+..|+|||++| ++++.++.|+|||..++
T Consensus        64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~--~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~  141 (432)
T d1qksa2          64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  141 (432)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE--EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence            45689999999999999999999999875442211  1112234577778888899999986 67888999999999999


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-eccCCCeeEEE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLS  395 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~  395 (519)
                      +.+..+..+........+.+......+....+..    ...+.....+.+.+++....    +..... -.+...+.+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~----~~~vs~~~~~~i~~~d~~~~----~~~~~~~i~~g~~~~~~~  213 (432)
T d1qksa2         142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP----EFIVNVKETGKILLVDYTDL----NNLKTTEISAERFLHDGG  213 (432)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSS----EEEEEETTTTEEEEEETTCS----SEEEEEEEECCSSEEEEE
T ss_pred             cceeeeccCCccccceeccCCCceeEEEECCCCC----EEEEEEccCCeEEEEEccCC----CcceEEEEcccCccccce
Confidence            9887776544433333332222111111111110    11112223334444433221    111111 13456788999


Q ss_pred             EcCCC-eEEEEe-CCCcEEEEECCCCeEEEEec---------------------------------------------CC
Q 010037          396 WSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFS---------------------------------------------HN  428 (519)
Q Consensus       396 ~sp~~-~L~sgs-~Dg~V~lWdl~~~~~~~~~~---------------------------------------------h~  428 (519)
                      |+|+| ++++++ .+..|.++|..+++.+..+.                                             |.
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~  293 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA  293 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccc
Confidence            99999 665555 55678889988766554331                                             11


Q ss_pred             CcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc------------------------EE---------eeccCCCceEE
Q 010037          429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ------------------------VV---------DYTDIREIVSA  475 (519)
Q Consensus       429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~------------------------~~---------~~~~~~~~V~~  475 (519)
                      ..|....+.| ++..+++++.+..+++|+.....                        .+         .+..+...|.+
T Consensus       294 ~~v~~~~~~~-~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~  372 (432)
T d1qksa2         294 WKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQ  372 (432)
T ss_dssp             TSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEE
T ss_pred             cEEEEEEEcC-CCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEE
Confidence            2344555666 66667777777777777543210                        00         11245667889


Q ss_pred             EEEeeCCCEEEEEe-----cCCeEEEEECCCCeeeeccccceeEEecCC
Q 010037          476 VCYCPDGKGGIVGT-----MTGNCRFYDIKGMQIFDLSTTAYLFALLGH  519 (519)
Q Consensus       476 v~~spdg~~l~sgs-----~dg~v~iwdl~~~~l~~~~~~~~~~~l~GH  519 (519)
                      ++|+|||++|+++.     .+|.|.|||.++++++..-+.+.+.+..||
T Consensus       373 ~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~~~tp~G~  421 (432)
T d1qksa2         373 GEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGK  421 (432)
T ss_dssp             EEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEE
T ss_pred             eEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCCccCCCee
Confidence            99999999887664     468999999999999887777777776665

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=3.9e-17  Score=158.36  Aligned_cols=237  Identities=11%  Similarity=0.111  Sum_probs=157.4

Q ss_pred             CeEEeeecCCeEEEeeCCccccccccccccceeec--CCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCeeeceeec
Q 010037          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA--HEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDV  324 (519)
Q Consensus       248 ~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~--H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~~~~~~~  324 (519)
                      +++++++.|++|+|||+.....       ...+..  +...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~-------~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV-------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCCeE-------EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            5799999999999999985442       223332  34567899999999987 5667899999999999998877765


Q ss_pred             cCCC-----CceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCC
Q 010037          325 QDTD-----PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (519)
Q Consensus       325 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (519)
                      +...     ...+.+.++....+......    .............+.+++.....    ....+. +...+.+++|+|+
T Consensus        75 ~~~~~~~~~~~~v~~s~dg~~l~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~-~~~~~~~~~~s~d  145 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDGKTLAIYESPV----RLELTHFEVQPTRVALYDAETLS----RRKAFE-APRQITMLAWARD  145 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEE----EECSSCEEECCCEEEEEETTTTE----EEEEEE-CCSSCCCEEECTT
T ss_pred             CCCcccccceeeEEEcCCCcEEEEeecCC----cceeeeccccccceeeccccCCe----EEEecc-ccCCceEEEEcCC
Confidence            5332     23444444433222211100    00000111122333344333221    122233 3456778888888


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEEec----------------------------------------------------
Q 010037          400 G-FLLSSSADKTVRLWQVGIDRCLRVFS----------------------------------------------------  426 (519)
Q Consensus       400 ~-~L~sgs~Dg~V~lWdl~~~~~~~~~~----------------------------------------------------  426 (519)
                      | ++++++.  .+.+||..+++....+.                                                    
T Consensus       146 g~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (337)
T d1pbyb_         146 GSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT  223 (337)
T ss_dssp             SSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred             CCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEE
Confidence            8 7777654  36677776655443321                                                    


Q ss_pred             ---------------CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecC
Q 010037          427 ---------------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT  491 (519)
Q Consensus       427 ---------------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~d  491 (519)
                                     +...+.++.++| ++.+++.+  ++.|++||+.+++.+....+...+.+++|+|||++|++++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         224 MDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBS
T ss_pred             EEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC
Confidence                           233445566666 66676655  589999999999999877788889999999999999999999


Q ss_pred             CeEEEEECCCCeee
Q 010037          492 GNCRFYDIKGMQIF  505 (519)
Q Consensus       492 g~v~iwdl~~~~l~  505 (519)
                      |.|+|||+.+++.+
T Consensus       301 ~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         301 GDLAAYDAETLEKK  314 (337)
T ss_dssp             SEEEEEETTTCCEE
T ss_pred             CcEEEEECCCCcEE
Confidence            99999999988755

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=2e-17  Score=161.02  Aligned_cols=256  Identities=8%  Similarity=0.011  Sum_probs=163.4

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceee-cCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCee
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~  318 (519)
                      ++|++++++|++++.+++|.|||+...+.       .+++. .|...+.+++|+|||++| +++..++.|++||+.+++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~-------~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV-------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE-------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE-------EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee
Confidence            57999999999999999999999985432       22343 456678899999999987 5556789999999999988


Q ss_pred             eceeeccCCC------CceEEEeecCCCCeEE--------------------eeccCCceee----------eeeeccCC
Q 010037          319 LDGFDVQDTD------PSCLYFTINHLSQLIP--------------------IDVDKEKIDK----------TKSLRKSS  362 (519)
Q Consensus       319 ~~~~~~~~~~------~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~----------~~~~~~s~  362 (519)
                      ...+......      +..+.+.++.......                    +.........          ......+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            7766544322      2334444433221111                    1111100000          00011122


Q ss_pred             CeeEEEeCCcc--ccc-cccceeEeeccCCCeeEEEEcCCC---------------------------eEEEEeCCCcEE
Q 010037          363 DLTCVVLPPKV--FRL-LEKPLHEFQGHSSEVLDLSWSKNG---------------------------FLLSSSADKTVR  412 (519)
Q Consensus       363 ~~~~~~~~~~~--~~~-~~~~~~~~~~h~~~V~~l~~sp~~---------------------------~L~sgs~Dg~V~  412 (519)
                      +..+.......  +.. ..+.+..+..+ .....+.++|++                           .++++..++.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
T d1jmxb_         155 DGSLYVAGPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  233 (346)
T ss_dssp             TSCEEEESSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             CCEEEEeCCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence            22222222111  111 11222222222 122223333332                           233444566788


Q ss_pred             EEECCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEec
Q 010037          413 LWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       413 lWdl~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~  490 (519)
                      +||+.++......  .+...+..+.++| ++.+++.+. ++.|++||+.+++.+....+...+.+++|+|||++|++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~  311 (346)
T d1jmxb_         234 SVDLKTGKTHTQEFADLTELYFTGLRSP-KDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT  311 (346)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECS-SCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB
T ss_pred             EEECCCCceEEEEeecccceeEEEEEeC-CCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeC
Confidence            8999888766544  3788899999999 666666655 45899999999999877677778999999999999999999


Q ss_pred             CCeEEEEECCCCeeee
Q 010037          491 TGNCRFYDIKGMQIFD  506 (519)
Q Consensus       491 dg~v~iwdl~~~~l~~  506 (519)
                      ||.|++||+.+++.+.
T Consensus       312 d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         312 FNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             SSEEEEEETTTTEEEE
T ss_pred             CCcEEEEECccCCEEE
Confidence            9999999999988764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=2e-16  Score=161.27  Aligned_cols=198  Identities=9%  Similarity=-0.019  Sum_probs=151.0

Q ss_pred             cCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceee
Q 010037          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (519)
Q Consensus       244 sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~  323 (519)
                      +++.-++++.+.+|+|.|||....+.       ...+..|. .+..++|||||++|++++.|+.|++||+.+++......
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v-------~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~  100 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEI-------KTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE  100 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCE-------EEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcE-------EEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE
Confidence            33444568899999999999875442       33456563 69999999999999999999999999998765321111


Q ss_pred             ccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-e-
Q 010037          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F-  401 (519)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~-  401 (519)
                                                                               +....+|.+.+.+.+|+|+| + 
T Consensus       101 ---------------------------------------------------------i~~~~~~~~~~~s~~~SpDG~~l  123 (432)
T d1qksa2         101 ---------------------------------------------------------IKIGSEARSIETSKMEGWEDKYA  123 (432)
T ss_dssp             ---------------------------------------------------------EECCSEEEEEEECCSTTCTTTEE
T ss_pred             ---------------------------------------------------------EecCCCCCCeEEecccCCCCCEE
Confidence                                                                     11123455667778899999 5 


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEec------------CCCcEEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCcEE--ee
Q 010037          402 LLSSSADKTVRLWQVGIDRCLRVFS------------HNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVV--DY  466 (519)
Q Consensus       402 L~sgs~Dg~V~lWdl~~~~~~~~~~------------h~~~V~~v~fsp~d~~~l-~sgs~Dg~V~iwd~~~~~~~--~~  466 (519)
                      +++++.+++|+|||..+++++..+.            +......+.++| ++.++ ++...++.|.+||..+.+..  ..
T Consensus       124 ~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~  202 (432)
T d1qksa2         124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTE  202 (432)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred             EEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEE
Confidence            4788899999999999999987763            445677899999 66654 56667899999999987654  34


Q ss_pred             ccCCCceEEEEEeeCCCEEEEEec-CCeEEEEECCCCeeeec
Q 010037          467 TDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       467 ~~~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~~~l~~~  507 (519)
                      ..+...+..++|+|||+++++++. ++.+.++|..++++...
T Consensus       203 i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         203 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence            456677899999999998877765 45799999998877543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=1.8e-14  Score=137.16  Aligned_cols=226  Identities=13%  Similarity=0.168  Sum_probs=162.5

Q ss_pred             EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEecccCeeeceeeccCCCC
Q 010037          251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDP  329 (519)
Q Consensus       251 asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~  329 (519)
                      ++++.+++|.|||....+..       +++.. ...+..++|+|||++| ++++.++.|++||+.+++.+..+..+.. +
T Consensus         6 V~~~~~~~v~v~D~~t~~~~-------~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~   76 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVT-------ATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-P   76 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEE-------EEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-E
T ss_pred             EEECCCCEEEEEECCCCeEE-------EEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-c
Confidence            45778999999998765422       23332 3457899999999987 4667899999999999998887765443 2


Q ss_pred             ceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeC
Q 010037          330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSA  407 (519)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~  407 (519)
                      ..+.+.......+               +....+..+.+++....    +....+. +...+.+++|+|++  .++++..
T Consensus        77 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~  136 (301)
T d1l0qa2          77 QGVAVSPDGKQVY---------------VTNMASSTLSVIDTTSN----TVAGTVK-TGKSPLGLALSPDGKKLYVTNNG  136 (301)
T ss_dssp             EEEEECTTSSEEE---------------EEETTTTEEEEEETTTT----EEEEEEE-CSSSEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccc---------------ccccccceeeecccccc----eeeeecc-ccccceEEEeecCCCeeeeeecc
Confidence            3333333221111               11222333444433321    2233333 45667899999999  5567778


Q ss_pred             CCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEE
Q 010037          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI  486 (519)
Q Consensus       408 Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~  486 (519)
                      ++.+.+|+..+...+..+.+...+.+++++| ++.+++++.. ++.+.+|+....+..........+..++|+++|+.++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  215 (301)
T d1l0qa2         137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAY  215 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEE
T ss_pred             ccceeeeeccccceeeecccCCCceEEEeec-cccceeeecccccccccccccceeeeecccccCCcceeeccccccccc
Confidence            8999999999999999999888899999999 7777777665 4678888888888877666777788999999999887


Q ss_pred             EEec---CCeEEEEECCCCeeee
Q 010037          487 VGTM---TGNCRFYDIKGMQIFD  506 (519)
Q Consensus       487 sgs~---dg~v~iwdl~~~~l~~  506 (519)
                      ++..   ++.|++||+.++++..
T Consensus       216 v~~~~~~~~~v~v~D~~t~~~~~  238 (301)
T d1l0qa2         216 VTNVDKYFNTVSMIDTGTNKITA  238 (301)
T ss_dssp             EEEECSSCCEEEEEETTTTEEEE
T ss_pred             cccccceeeeeeeeecCCCeEEE
Confidence            7654   3679999999987654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.65  E-value=8.8e-14  Score=137.22  Aligned_cols=262  Identities=9%  Similarity=-0.076  Sum_probs=162.1

Q ss_pred             ecccceeecCCCCeEEee-----ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-------
Q 010037          236 DRHGSATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-------  303 (519)
Q Consensus       236 ~~~~~~~~sp~g~~lasg-----s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-------  303 (519)
                      .....++++|+|+.+++.     +..+.|.+||....+.       ..++..+..+  .+.|+|||++|++++       
T Consensus        21 ~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          21 GPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-------LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             CCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE-------EEEEeCCCCc--cEEEcCCCCEEEEEeecCCccc
Confidence            445568899999998763     3446788888764432       2234445443  689999999998875       


Q ss_pred             ---CCCcEEEEecccCeeeceeeccCCCC-------ceEEEeecCCCCeEEee----------ccCCcee----------
Q 010037          304 ---EDGTVRVWKVIEHERLDGFDVQDTDP-------SCLYFTINHLSQLIPID----------VDKEKID----------  353 (519)
Q Consensus       304 ---~Dg~I~iWd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~----------~~~~~~~----------  353 (519)
                         .++.|.+||..+++....+..+....       ..+.+.++.....+...          .......          
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYH  171 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEE
Confidence               45789999999999877765544322       33444444432222111          1100000          


Q ss_pred             -----eeeeeccCCCeeEEEeCCccccccccceeEe--eccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec
Q 010037          354 -----KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS  426 (519)
Q Consensus       354 -----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~  426 (519)
                           ....+....++.+.+++..............  .++......+.+.+++.++..+.++.+.+|+...........
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  251 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEe
Confidence                 0011223334444444433322211111111  112223344556666677777889999999988876443321


Q ss_pred             ---C----------CCcEEEEEEeeCCCC----------EEEEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC
Q 010037          427 ---H----------NNYVTSVAFNPVDDN----------YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (519)
Q Consensus       427 ---h----------~~~V~~v~fsp~d~~----------~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~  483 (519)
                         +          ......++++| ++.          .+++...++.|.+||+.+++.+....+...+..++|+|||+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~  330 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG  330 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCC
Confidence               1          12234455555 443          34455667889999999999998878888899999999998


Q ss_pred             E--EEEEecCCeEEEEECCCCeeeec
Q 010037          484 G--GIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       484 ~--l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      .  +++++.|+.|++||+.+++.+..
T Consensus       331 ~~l~vt~~~d~~v~v~D~~tg~~~~~  356 (373)
T d2madh_         331 PDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            4  46788999999999999987653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.62  E-value=2.1e-14  Score=145.54  Aligned_cols=195  Identities=9%  Similarity=0.008  Sum_probs=141.9

Q ss_pred             CCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeecc
Q 010037          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (519)
Q Consensus       246 ~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~  325 (519)
                      .+-++++.+.||+|+|||....+       ...++..|. .+..++|||||++|++++.|++|++||+.+++......  
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~-------~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~--  100 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKK-------IVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE--  100 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCS-------EEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE--
T ss_pred             CeEEEEEEcCCCEEEEEECCCCc-------EEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE--
Confidence            33356778899999999987543       234566664 58999999999999999999999999998886432211  


Q ss_pred             CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eE-E
Q 010037          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-L  403 (519)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L-~  403 (519)
                                                                             +....+|...+.+++|+|+| +| +
T Consensus       101 -------------------------------------------------------i~~~~~~~~~~~s~~~spDG~~l~v  125 (426)
T d1hzua2         101 -------------------------------------------------------IKIGIEARSVESSKFKGYEDRYTIA  125 (426)
T ss_dssp             -------------------------------------------------------EECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             -------------------------------------------------------EeCCCCCcceEEeeeecCCCCEEEE
Confidence                                                                   11223566677888999999 55 5


Q ss_pred             EEeCCCcEEEEECCCCeEEEEec------------CCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcE--Eeecc
Q 010037          404 SSSADKTVRLWQVGIDRCLRVFS------------HNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQV--VDYTD  468 (519)
Q Consensus       404 sgs~Dg~V~lWdl~~~~~~~~~~------------h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~--~~~~~  468 (519)
                      ++..++++++||..++.++..+.            +......+.+++ ++..++... ..+.+.+++......  +....
T Consensus       126 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  204 (426)
T d1hzua2         126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG  204 (426)
T ss_dssp             EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECSSSSSCEEEEEE
T ss_pred             eecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecCCCCeEEEEEeccccceeeEEec
Confidence            66689999999999998887764            233445566666 555554443 345666666655442  34556


Q ss_pred             CCCceEEEEEeeCCCEEEEEec-CCeEEEEECCCCeeee
Q 010037          469 IREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKGMQIFD  506 (519)
Q Consensus       469 ~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~~~l~~  506 (519)
                      +...+..+.|+|+|++++++.. +..+.+|++.++++..
T Consensus       205 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~  243 (426)
T d1hzua2         205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  243 (426)
T ss_dssp             CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cCCccEeeeECCCCcEEEeeeecccceeeeecccccEEE
Confidence            7788999999999999888765 5569999999888754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=4e-13  Score=129.70  Aligned_cols=255  Identities=13%  Similarity=0.170  Sum_probs=152.4

Q ss_pred             eecccceeecCCCCeEEee-ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEe
Q 010037          235 IDRHGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWK  312 (519)
Q Consensus       235 ~~~~~~~~~sp~g~~lasg-s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd  312 (519)
                      ...+..++|+|||++|+++ ..++.|++|++.........    .....+...+..++|+|||++|++++. ++.|.+|+
T Consensus        36 ~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~----~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          36 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF----AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE----EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE----eeecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence            3455679999999999654 45899999998754332211    011234456778999999999999875 67899999


Q ss_pred             cccCeeeceeec--cCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          313 VIEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       313 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ............  ....+..+.+.++... ++........+..... .......           ..........+...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~-~~~~~~~~~~i~~~~~-~~~~~~~-----------~~~~~~~~~~~g~~  178 (333)
T d1ri6a_         112 LEDGLPVGVVDVVEGLDGCHSANISPDNRT-LWVPALKQDRICLFTV-SDDGHLV-----------AQDPAEVTTVEGAG  178 (333)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSE-EEEEEGGGTEEEEEEE-CTTSCEE-----------EEEEEEEECSTTCC
T ss_pred             cccccceecccccCCCccceEEEeeeccee-eeccccccceeeEEEe-ccCCcce-----------eeeceeeeeecCCC
Confidence            877665444332  2223334444444322 1222211111111110 0000000           00001112234456


Q ss_pred             eeEEEEcCCC-eE-EEEeCCCcEEEEECCCCe----EEEEe-------cCCCcEEEEEEeeCCCCEEE-EEeCCCeEEEE
Q 010037          391 VLDLSWSKNG-FL-LSSSADKTVRLWQVGIDR----CLRVF-------SHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIW  456 (519)
Q Consensus       391 V~~l~~sp~~-~L-~sgs~Dg~V~lWdl~~~~----~~~~~-------~h~~~V~~v~fsp~d~~~l~-sgs~Dg~V~iw  456 (519)
                      ...++|++++ .+ .+....+...+|++....    .....       ........++++| ++++++ ++..++.+.+|
T Consensus       179 p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~~~~~~~~~~~~~~~  257 (333)
T d1ri6a_         179 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVF  257 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred             ccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec-ccCceeeecccCCeEEEE
Confidence            7889999998 44 455566778888865432    22222       1345677889999 776555 45567899999


Q ss_pred             EcCCCcE-E---eeccCCCceEEEEEeeCCCEEEEEec-CCeEEEE--ECCCCeeeec
Q 010037          457 EVRRCQV-V---DYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFY--DIKGMQIFDL  507 (519)
Q Consensus       457 d~~~~~~-~---~~~~~~~~V~~v~~spdg~~l~sgs~-dg~v~iw--dl~~~~l~~~  507 (519)
                      ++..... .   ........+..++|+|||++|++++. ++.|++|  |..++++..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~  315 (333)
T d1ri6a_         258 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK  315 (333)
T ss_dssp             EECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEE
Confidence            9876432 2   23344566788999999999887764 5889998  5677876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=4.8e-14  Score=137.89  Aligned_cols=249  Identities=9%  Similarity=-0.053  Sum_probs=151.6

Q ss_pred             ceeecCCCCeEEee----------ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe--CCCc
Q 010037          240 SATLKPGDHELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG--EDGT  307 (519)
Q Consensus       240 ~~~~sp~g~~lasg----------s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs--~Dg~  307 (519)
                      .++|+|||++|++.          ..++.|++||..........................+.|+|++++++.+.  .+..
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  130 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  130 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence            47999999998764          45789999999865432110000000011122335689999999887764  5678


Q ss_pred             EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      +.+|+..+++....+......   .. .+......+.+..+....  ..  ...............         ....+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~dg~~~--~v--~~~~~~~~~~~~~~~---------~~~~~  193 (355)
T d2bbkh_         131 VGVVDLEGKAFKRMLDVPDCY---HI-FPTAPDTFFMHCRDGSLA--KV--AFGTEGTPEITHTEV---------FHPED  193 (355)
T ss_dssp             EEEEETTTTEEEEEEECCSEE---EE-EEEETTEEEEEETTSCEE--EE--ECCSSSCCEEEECCC---------CSCTT
T ss_pred             eeeeecCCCcEeeEEecCCcc---eE-eecCCcceEEEcCCCCEE--EE--EecCCCeEEEEeccc---------cccee
Confidence            999999999877766543211   11 111111111111111100  00  000001111111100         01224


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--c-C----------CCcEEEEEEeeCCCCEEEEEeCC---
Q 010037          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--S-H----------NNYVTSVAFNPVDDNYFISGSID---  450 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~--~-h----------~~~V~~v~fsp~d~~~l~sgs~D---  450 (519)
                      ...+....+.+++ .++.++.++.+++|++..+......  . +          ......++++| ++..++....+   
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~  272 (355)
T d2bbkh_         194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDE  272 (355)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCT
T ss_pred             cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCc
Confidence            4456667777777 8899999999999999887643221  1 1          12234588888 77777765543   


Q ss_pred             -------CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCC--EEEEEecCCeEEEEECCCCeeee
Q 010037          451 -------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK--GGIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       451 -------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~--~l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                             ..|.+||..+++.+....+...+.+++|+|||+  +++++..|+.|++||+++++++.
T Consensus       273 ~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR  337 (355)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             eeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE
Confidence                   369999999999886666667789999999998  34567779999999999998754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=2.9e-13  Score=130.47  Aligned_cols=218  Identities=10%  Similarity=0.056  Sum_probs=141.0

Q ss_pred             cceeecCCCCeE-EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe------------CC
Q 010037          239 GSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG------------ED  305 (519)
Q Consensus       239 ~~~~~sp~g~~l-asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs------------~D  305 (519)
                      .+++|+|||+++ ++++.++.|.+||+...+.... ... .....+...+..++|+|++++++++.            .+
T Consensus        37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~-~~~-~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T d1pbyb_          37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR-IDL-STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE-EEC-CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             cEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE-Eec-CCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccc
Confidence            468999999987 5677899999999986543211 100 00111233456789999999998876            46


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEE------eeccCCceeeeeee------------------ccC
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP------IDVDKEKIDKTKSL------------------RKS  361 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------------------~~s  361 (519)
                      ..+.+||..+++....+.... .+..+.+.++....+..      +.............                  ...
T Consensus       115 ~~~~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (337)
T d1pbyb_         115 TRVALYDAETLSRRKAFEAPR-QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCS-SCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT
T ss_pred             cceeeccccCCeEEEeccccC-CceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeecccc
Confidence            789999999998877776543 34455555544322211      11111111100000                  000


Q ss_pred             CCe-----------------------eEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECC
Q 010037          362 SDL-----------------------TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG  417 (519)
Q Consensus       362 ~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~  417 (519)
                      ...                       .+..++.....   .....+..+...+..++++|++ +++.+  ++.|++||+.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~  268 (337)
T d1pbyb_         194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE  268 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred             ccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc---EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECC
Confidence            000                       01111111100   0122344566778888888888 55554  5899999999


Q ss_pred             CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          418 IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       418 ~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      +++.+..+.+...+.+++|+| ++++|++++.|++|+|||+.+.+.+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         269 KNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             TTEEEEEEECSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             CCcEEEEEcCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            999999999888999999999 99999999999999999999988774

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.49  E-value=2.7e-13  Score=131.23  Aligned_cols=223  Identities=10%  Similarity=0.066  Sum_probs=136.9

Q ss_pred             ccceeecCCCCeE-EeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe------------C
Q 010037          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG------------E  304 (519)
Q Consensus       238 ~~~~~~sp~g~~l-asgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs------------~  304 (519)
                      ..+++|+|||+++ +++..++.|++||+...+... ..........+...+..++|+|||++|++++            .
T Consensus        42 p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~-~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~  120 (346)
T d1jmxb_          42 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  120 (346)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             cceEEECCCCCEEEEEECCCCcEEEEeCccCeeee-eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccC
Confidence            3468999999987 556688999999998654321 1111111122333466799999999988765            4


Q ss_pred             CCcEEEEecccCeeeceeeccCC--CCceEEEeecCC-----CCeEEeeccCCceeeeee------------------ec
Q 010037          305 DGTVRVWKVIEHERLDGFDVQDT--DPSCLYFTINHL-----SQLIPIDVDKEKIDKTKS------------------LR  359 (519)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~------------------~~  359 (519)
                      ++.+.+|+..+++....+.....  ......+.....     ..+..+............                  ..
T Consensus       121 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (346)
T d1jmxb_         121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH  200 (346)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred             cceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEE
Confidence            77899999988776544433221  111111111100     001111111111000000                  00


Q ss_pred             cCCCe-------------------------eEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEE
Q 010037          360 KSSDL-------------------------TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRL  413 (519)
Q Consensus       360 ~s~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~l  413 (519)
                      .....                         .+..++....   ......+..|...+..+.+++++ +++... ++.|++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v  276 (346)
T d1jmxb_         201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG---KTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAK  276 (346)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC---CEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEE
T ss_pred             ecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC---ceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEE
Confidence            00011                         1111111110   11123345678888999999988 665554 457999


Q ss_pred             EECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee
Q 010037          414 WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (519)
Q Consensus       414 Wdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~  466 (519)
                      ||+.+++.+..+.+...+++++|+| |+++|++++.|+.|+|||+.+++.+..
T Consensus       277 ~d~~~~~~~~~~~~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         277 YDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             EETTTTEEEEEEECSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             EECCCCcEEEEEcCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEE
Confidence            9999999999998888899999999 999999999999999999999998853

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=3.3e-12  Score=126.20  Aligned_cols=238  Identities=8%  Similarity=-0.114  Sum_probs=143.6

Q ss_pred             ceeecCCCCeEEee----------ecCCeEEEeeCCccccccccccccceeecC-------CCCEEEEEEccCCCEEEEE
Q 010037          240 SATLKPGDHELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASG  302 (519)
Q Consensus       240 ~~~~sp~g~~lasg----------s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~LaSg  302 (519)
                      .++|+|||+.|++.          ..++.|++||....+...       .+..|       ......++|+|||++|+.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~-------~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va  141 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA-------DIELPDAPRFSVGPRVHIIGNCASSACLLFF  141 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE-------EEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEee-------eecCCccceecccCCccceEECCCCCEEEEE
Confidence            37899999988864          457889999987544321       11111       1122358999999999877


Q ss_pred             e-CCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcc--cccccc
Q 010037          303 G-EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV--FRLLEK  379 (519)
Q Consensus       303 s-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~  379 (519)
                      . .++.|.+||+.+++....+..+.....    .+......+               ..+.++....+....  ......
T Consensus       142 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~v---------------~~~~Dg~~~~~~~~~~~~~~~~~  202 (368)
T d1mdah_         142 LFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAATHY---------------LGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             ECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEETTEEE---------------CCCCTTSCEEEECCSSCCCCEEC
T ss_pred             eCCCCeEEEEECCCCcEeEEeeccCcceE----ccCCCceEE---------------EEcCCCCEEEEEecCCceeeeee
Confidence            6 579999999999988777765433211    111111111               111111111111100  000000


Q ss_pred             ceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-------------CCCcEEEEEEeeCCCCEEE
Q 010037          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------------HNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-------------h~~~V~~v~fsp~d~~~l~  445 (519)
                      ....+..+...+....+.+++ .+.+.  .+.+.++++..+.......             .......++++| ++..++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~  279 (368)
T d1mdah_         203 GAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIM  279 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEE
T ss_pred             ecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEE
Confidence            011123344555667777777 43333  4567777776655443321             111234578888 666555


Q ss_pred             EEeCC---------CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCE--EEEEecCCeEEEEECCCCeeee
Q 010037          446 SGSID---------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG--GIVGTMTGNCRFYDIKGMQIFD  506 (519)
Q Consensus       446 sgs~D---------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~--l~sgs~dg~v~iwdl~~~~l~~  506 (519)
                      ....+         ..|.+||..+++.+....+...+.+++|+|||+.  ++++..++.|++||..+++.+.
T Consensus       280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             EEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            44322         3599999999998876667778899999999973  4566778999999999998764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=2.7e-11  Score=116.46  Aligned_cols=187  Identities=13%  Similarity=0.170  Sum_probs=132.2

Q ss_pred             eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEecccCeeeceeeccCC
Q 010037          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQDT  327 (519)
Q Consensus       249 ~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs-~Dg~I~iWd~~~~~~~~~~~~~~~  327 (519)
                      .+++++.+++|+||++..... +   ... ....|.+.|..|+|+|||++|++++ .|+.|++|++........+     
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~-l---~~~-~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~-----   75 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA-L---TLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-----   75 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC-E---EEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-----
T ss_pred             EEEECCCCCcEEEEEEcCCCC-e---EEE-EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-----
Confidence            346778999999999874321 1   111 2245788999999999999996554 5899999998655421111     


Q ss_pred             CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEe
Q 010037          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS  406 (519)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs  406 (519)
                                                                            .....+...+..++|+|+| +|++++
T Consensus        76 ------------------------------------------------------~~~~~~~~~p~~l~~spDg~~l~v~~  101 (333)
T d1ri6a_          76 ------------------------------------------------------AAESALPGSLTHISTDHQGQFVFVGS  101 (333)
T ss_dssp             ------------------------------------------------------EEEEECSSCCSEEEECTTSSEEEEEE
T ss_pred             ------------------------------------------------------eeecccCCCceEEEEcCCCCEEeecc
Confidence                                                                  0111234557789999999 777776


Q ss_pred             -CCCcEEEEECCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCcEE-------eeccCCCceE
Q 010037          407 -ADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVV-------DYTDIREIVS  474 (519)
Q Consensus       407 -~Dg~V~lWdl~~~~~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~~~~~-------~~~~~~~~V~  474 (519)
                       .++.|.+|+..........   .+...+.++.++| +++++++++. +..|.+|+.......       ..........
T Consensus       102 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~  180 (333)
T d1ri6a_         102 YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR  180 (333)
T ss_dssp             TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred             cCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCcc
Confidence             5778999998877655444   3777889999999 8888887774 567999998765322       1233445678


Q ss_pred             EEEEeeCCCEEEEEe-cCCeEEEEECC
Q 010037          475 AVCYCPDGKGGIVGT-MTGNCRFYDIK  500 (519)
Q Consensus       475 ~v~~spdg~~l~sgs-~dg~v~iwdl~  500 (519)
                      .++|++++.+++... ..+...+|+..
T Consensus       181 ~i~~~~~~~~~~~~~~~~~~~~v~~~~  207 (333)
T d1ri6a_         181 HMVFHPNEQYAYCVNELNSSVDVWELK  207 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             EEEEeccceeEEeeccccCceEEEeec
Confidence            899999999877654 45667787764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.34  E-value=3.2e-10  Score=111.03  Aligned_cols=80  Identities=9%  Similarity=0.028  Sum_probs=67.8

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCC--EEEEEeCCCeEEEEEcCCCcEEe-eccCCCceEEEE
Q 010037          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVC  477 (519)
Q Consensus       401 ~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~--~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~  477 (519)
                      .+++...++.|.+||+.+++.+..+.+...+.+++|+| |++  ++++++.|++|+|||+.+++.+. +..+....+.++
T Consensus       290 ~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~  368 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLS  368 (373)
T ss_pred             eEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEE
Confidence            45566778899999999999999999999999999999 887  45688999999999999999985 445777778887


Q ss_pred             EeeC
Q 010037          478 YCPD  481 (519)
Q Consensus       478 ~spd  481 (519)
                      +.++
T Consensus       369 ~~~~  372 (373)
T d2madh_         369 VMNE  372 (373)
T ss_pred             EecC
Confidence            7654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=4.5e-09  Score=101.60  Aligned_cols=198  Identities=12%  Similarity=0.039  Sum_probs=128.8

Q ss_pred             eeecCCCCeEEee-----ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE----------eCC
Q 010037          241 ATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG----------GED  305 (519)
Q Consensus       241 ~~~sp~g~~lasg-----s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg----------s~D  305 (519)
                      .+.+||++.+++.     ...++|.|||....+.       ..++..+..+  .++|+|||++|+.+          ..|
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-------EEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCC
Confidence            4678999998764     3466899999876542       1234444433  79999999988764          347


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      +.|++||+.+++....+..+....                                                       .
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~-------------------------------------------------------~  102 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPR-------------------------------------------------------F  102 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCC-------------------------------------------------------C
T ss_pred             CEEEEEECCCCCEEEEEecCCcce-------------------------------------------------------e
Confidence            899999999888665543322110                                                       0


Q ss_pred             ccCCCeeEEEEcCCC-eEEEE--eCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCc
Q 010037          386 GHSSEVLDLSWSKNG-FLLSS--SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~-~L~sg--s~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~  462 (519)
                      ........++|+|++ +++.+  +.+..+.+|+..+++.+..+.........  .. ....+++.+.|++..++......
T Consensus       103 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~dg~~~~v~~~~~~  179 (355)
T d2bbkh_         103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF--PT-APDTFFMHCRDGSLAKVAFGTEG  179 (355)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE--EE-ETTEEEEEETTSCEEEEECCSSS
T ss_pred             ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe--ec-CCcceEEEcCCCCEEEEEecCCC
Confidence            112334568899999 55555  45678999999999998887644332211  11 23444455556655555443322


Q ss_pred             EEe-------eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          463 VVD-------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       463 ~~~-------~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      .+.       ...+...+....+.+++..++.++.+|.+++|++.++++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         180 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE
T ss_pred             eEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE
Confidence            111       1223334556778888899999999999999999987653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.02  E-value=2.4e-09  Score=108.78  Aligned_cols=143  Identities=11%  Similarity=0.098  Sum_probs=105.9

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---------CCcEEE
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRV  310 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---------Dg~I~i  310 (519)
                      .+.|.+++.++..  .++.|.+|+...+...  .+.....+..|...|.++.|||||++||.++.         ++.+.|
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEE--EEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEE--EEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            3678889887765  4788999999876643  22333456778889999999999999998853         456677


Q ss_pred             EecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCC
Q 010037          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (519)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (519)
                      ||+.+++.                                                               ..+..|...
T Consensus        97 ~d~~~~~~---------------------------------------------------------------~~l~~~~~~  113 (470)
T d2bgra1          97 YDLNKRQL---------------------------------------------------------------ITEERIPNN  113 (470)
T ss_dssp             EETTTTEE---------------------------------------------------------------CCSSCCCTT
T ss_pred             EECCCCcc---------------------------------------------------------------cccccCCcc
Confidence            77766652                                                               224456778


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-------------------CCCcEEEEEEeeCCCCEEEEEeCC
Q 010037          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------------------HNNYVTSVAFNPVDDNYFISGSID  450 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-------------------h~~~V~~v~fsp~d~~~l~sgs~D  450 (519)
                      +..+.|+|+| .|+.. .++.+.+|++.+++..+...                   ..+....+.|+| |+++|+....|
T Consensus       114 ~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d  191 (470)
T d2bgra1         114 TQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFN  191 (470)
T ss_dssp             EEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEE
T ss_pred             ccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEec
Confidence            8999999999 77764 56789999999887765442                   122345688999 99999988765


Q ss_pred             C
Q 010037          451 G  451 (519)
Q Consensus       451 g  451 (519)
                      .
T Consensus       192 ~  192 (470)
T d2bgra1         192 D  192 (470)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.98  E-value=6.1e-10  Score=113.28  Aligned_cols=149  Identities=13%  Similarity=0.157  Sum_probs=112.1

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEE
Q 010037          289 TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVV  368 (519)
Q Consensus       289 ~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  368 (519)
                      .+.|.+++.++..  .|+.|.+||+.+++....+..                                            
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~--------------------------------------------   54 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLEN--------------------------------------------   54 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECT--------------------------------------------
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEch--------------------------------------------
Confidence            4789999987764  578899999998875322211                                            


Q ss_pred             eCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeC---------CCcEEEEECCCCeEEEEecCCCcEEEEEEee
Q 010037          369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA---------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP  438 (519)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~---------Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp  438 (519)
                                   ..+..|...|.++.|+|+| +|+.++.         ++.+.|||+.+++......+...+..+.|+|
T Consensus        55 -------------~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP  121 (470)
T d2bgra1          55 -------------STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP  121 (470)
T ss_dssp             -------------TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS
T ss_pred             -------------hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccccc
Confidence                         1235577789999999999 7777643         5678999999998766556899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCcEEeecc-------------------CCCceEEEEEeeCCCEEEEEecCCe-EEEEE
Q 010037          439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTD-------------------IREIVSAVCYCPDGKGGIVGTMTGN-CRFYD  498 (519)
Q Consensus       439 ~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-------------------~~~~V~~v~~spdg~~l~sgs~dg~-v~iwd  498 (519)
                       ||+++|... ++.+++|+..+++......                   ..+....+.|+|||+.|+....|.. +..|.
T Consensus       122 -DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         122 -VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             -STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             -CcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence             999999864 6789999999887664321                   1223456889999999999876543 44443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.75  E-value=1.7e-08  Score=98.79  Aligned_cols=87  Identities=7%  Similarity=0.029  Sum_probs=66.1

Q ss_pred             eeEEEEcCCC-eEEEEe-CC--------CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCC--EEEEEeCCCeEEEEEc
Q 010037          391 VLDLSWSKNG-FLLSSS-AD--------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEV  458 (519)
Q Consensus       391 V~~l~~sp~~-~L~sgs-~D--------g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~--~l~sgs~Dg~V~iwd~  458 (519)
                      ...+++++++ .++... .+        ..|.+||..+++.+..+.+...+.+++|+| |++  +++++..|+.|+|||.
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEES
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECC-CCCEEEEEEeCCCCeEEEEEC
Confidence            3457788887 443332 11        359999999999999888778899999999 775  3567778999999999


Q ss_pred             CCCcEEeeccCCCceEEEEE
Q 010037          459 RRCQVVDYTDIREIVSAVCY  478 (519)
Q Consensus       459 ~~~~~~~~~~~~~~V~~v~~  478 (519)
                      .+++.+.........+.|++
T Consensus       345 ~tgk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         345 ASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             SSCEEEEECCCCSCCCEEEC
T ss_pred             CCCCEEEEEECCCCCCEEEE
Confidence            99999876665555555554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.72  E-value=9.2e-08  Score=95.08  Aligned_cols=190  Identities=13%  Similarity=0.062  Sum_probs=118.2

Q ss_pred             EEeeecCCeEEEeeCCccccccc--c-------cc--------------ccceeecCCCCEEEEEEccCCCEEEEE-eCC
Q 010037          250 LTLGQRMRRVRVHPVKKQSRELS--S-------LY--------------TGQEFLAHEGSILTMKFSLDGQYLASG-GED  305 (519)
Q Consensus       250 lasgs~dg~I~vw~~~~~~~~~~--~-------~~--------------~~~~l~~H~~~I~~l~fspdg~~LaSg-s~D  305 (519)
                      +++|+.+|+|+||++...+....  -       .+              ....-..|.-.+....++|||++|+.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56788899999999865432110  0       00              000112244455566678999998665 467


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEee
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (519)
                      ..|.++|+.+++....+..+                                                            
T Consensus        94 ~rVavIDl~t~k~~~ii~iP------------------------------------------------------------  113 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIP------------------------------------------------------------  113 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECT------------------------------------------------------------
T ss_pred             CEEEEEECCCCcEeeEEecC------------------------------------------------------------
Confidence            89999999998865544432                                                            


Q ss_pred             ccCCCeeEEEEcCCC---eEEEEeCC-----------------CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE
Q 010037          386 GHSSEVLDLSWSKNG---FLLSSSAD-----------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       386 ~h~~~V~~l~~sp~~---~L~sgs~D-----------------g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~  445 (519)
                       +...+..++|+|++   +++..+.+                 ..+..+|..+.+....+........+.|+| ++++++
T Consensus       114 -~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~sp-dGk~a~  191 (441)
T d1qnia2         114 -NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADY-TGKYAT  191 (441)
T ss_dssp             -TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECS-SSSEEE
T ss_pred             -CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECC-CCCEEE
Confidence             12334445555544   22222211                 124557777777777666556677788888 777777


Q ss_pred             EEeCC-----------------------------------------CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCE
Q 010037          446 SGSID-----------------------------------------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG  484 (519)
Q Consensus       446 sgs~D-----------------------------------------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~  484 (519)
                      +.+.+                                         +.+.|++.....++.+.........+.++|||++
T Consensus       192 vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGky  271 (441)
T d1qnia2         192 STCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKY  271 (441)
T ss_dssp             EEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCE
T ss_pred             EEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCE
Confidence            76643                                         3444444444444444444455678999999998


Q ss_pred             EEE-EecCCeEEEEECCC
Q 010037          485 GIV-GTMTGNCRFYDIKG  501 (519)
Q Consensus       485 l~s-gs~dg~v~iwdl~~  501 (519)
                      +++ +..+++|.+||+.+
T Consensus       272 l~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         272 FIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             EEEECTTSSBEEEEEGGG
T ss_pred             EEEeCCcCCcEEEEEeeh
Confidence            765 56789999999864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=1.7e-05  Score=72.74  Aligned_cols=224  Identities=11%  Similarity=0.090  Sum_probs=125.8

Q ss_pred             eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEecccCeeeceeeccCCCCceEEE
Q 010037          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIEHERLDGFDVQDTDPSCLYF  334 (519)
Q Consensus       258 ~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg---~I~iWd~~~~~~~~~~~~~~~~~~~~~~  334 (519)
                      .|.|.|......        +.+..+...+...+|||||++||-.....   .+.+.+...+... .+...........+
T Consensus        20 ~l~i~d~dG~~~--------~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (269)
T d2hqsa1          20 ELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAF   90 (269)
T ss_dssp             EEEEEETTSCSC--------EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEE
T ss_pred             EEEEEcCCCCCc--------EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeeccccccee
Confidence            566767653322        23445677888999999999998765432   3555555444432 22222233333344


Q ss_pred             eecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC--eEEEEeCCCc--
Q 010037          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKT--  410 (519)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~L~sgs~Dg~--  410 (519)
                      .+.....+...... ...            ....+...     .........+........+++.+  .+++...++.  
T Consensus        91 spdg~~i~~~~~~~-~~~------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          91 SPDGSKLAFALSKT-GSL------------NLYVMDLA-----SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             CTTSSEEEEEECTT-SSC------------EEEEEETT-----TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             cCCCCeeeEeeecC-Ccc------------ceeecccc-----cccceeeeeccccccccccccccccceecccccCCce
Confidence            44332222211111 000            01100000     01112222233444455667766  5555555554  


Q ss_pred             EEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---eEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEE
Q 010037          411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV  487 (519)
Q Consensus       411 V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~s  487 (519)
                      |.+.++..+................|+| ++..++..+.++   .|.+.+...+.. .............|+|||+.|+.
T Consensus       153 i~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f  230 (269)
T d2hqsa1         153 VYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIY  230 (269)
T ss_dssp             EEEEETTSSCCEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEE
T ss_pred             Eeeeecccccceeeeccccccccccccc-ccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEE
Confidence            5566666665555555777788899999 888777765543   455555555544 34445556778899999999876


Q ss_pred             EecC---CeEEEEECCCCeeeecccc
Q 010037          488 GTMT---GNCRFYDIKGMQIFDLSTT  510 (519)
Q Consensus       488 gs~d---g~v~iwdl~~~~l~~~~~~  510 (519)
                      .+..   ..++++++.++...++...
T Consensus       231 ~s~~~~~~~l~~~~~dg~~~~~lt~~  256 (269)
T d2hqsa1         231 SSSQGMGSVLNLVSTDGRFKARLPAT  256 (269)
T ss_dssp             EEEETTEEEEEEEETTSCCEEECCCS
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEeCC
Confidence            5543   4689999998887766543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.69  E-value=1e-06  Score=83.54  Aligned_cols=235  Identities=13%  Similarity=0.062  Sum_probs=137.0

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeee
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~  319 (519)
                      .++++|||+++++...+++|..++......         .+......+.+++|++||+++++...++.+.+|+.......
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~---------~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPDGNQQ---------IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCEE---------EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCCCCEE---------EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc
Confidence            379999999999999999998888553221         23445678999999999999998888888888887543221


Q ss_pred             -ceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcC
Q 010037          320 -DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (519)
Q Consensus       320 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (519)
                       ..+...................++........+....  .......+........      ..........+..+.+..
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLID--VVQPSGSIWLEHPMLA------RSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEE--TTTTEEEEEEECGGGS------CSSTTCCSCSEEEEEEET
T ss_pred             eeeccccCCccccceeEEccCCCEEeeccccccceeee--ccCCcceeEecCCccc------eeeccCcccccccccccC
Confidence             1111111111111222222222222222221111110  0111111111111100      000111223456677765


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEE---EEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE--eeccCCCce
Q 010037          399 NGFLLSSSADKTVRLWQVGIDRCL---RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIV  473 (519)
Q Consensus       399 ~~~L~sgs~Dg~V~lWdl~~~~~~---~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V  473 (519)
                      +..+++.+..+.|..+++......   ..+........++|.+ +++++++...+++|..++.......  .....-...
T Consensus       175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~p  253 (302)
T d2p4oa1         175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGS  253 (302)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTE
T ss_pred             CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCc
Confidence            547777788899998887654322   2223344567799999 8998888888999999987654322  233344568


Q ss_pred             EEEEE---eeCCCEEEEEecCC
Q 010037          474 SAVCY---CPDGKGGIVGTMTG  492 (519)
Q Consensus       474 ~~v~~---spdg~~l~sgs~dg  492 (519)
                      ++++|   .+|++.|.+++..|
T Consensus       254 t~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         254 TAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             EEEEECCSTTTTTEEEEEECTT
T ss_pred             eEEEEcCCCCCCCEEEEECCCC
Confidence            99999   67888888776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=3.7e-06  Score=77.35  Aligned_cols=216  Identities=11%  Similarity=0.051  Sum_probs=119.5

Q ss_pred             cccceeecCCCCeEEeeecCC---eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEe
Q 010037          237 RHGSATLKPGDHELTLGQRMR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWK  312 (519)
Q Consensus       237 ~~~~~~~sp~g~~lasgs~dg---~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~I~iWd  312 (519)
                      .+.+-+|+|||+.||......   .+.+.+......        ..+..+.+.+....|+|+|+.|+.... ++...++.
T Consensus        40 ~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          40 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             ceeeeEECCCCCEEEEEEeeccCcceeeeecccCce--------eEEeeeecccccceecCCCCeeeEeeecCCccceee
Confidence            344578999999998754332   355555443221        234567788899999999998877553 33333333


Q ss_pred             cccCeeeceeeccCCCCc-eEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCe
Q 010037          313 VIEHERLDGFDVQDTDPS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (519)
                      .................. ...+.... ..+......            .....+...+..     ......+..+....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~g~~~i~~~~~~-----~~~~~~~~~~~~~~  173 (269)
T d2hqsa1         112 MDLASGQIRQVTDGRSNNTEPTWFPDS-QNLAFTSDQ------------AGRPQVYKVNIN-----GGAPQRITWEGSQN  173 (269)
T ss_dssp             EETTTCCEEECCCCSSCEEEEEECTTS-SEEEEEECT------------TSSCEEEEEETT-----SSCCEECCCSSSEE
T ss_pred             cccccccceeeeecccccccccccccc-ccceecccc------------cCCceEeeeecc-----cccceeeecccccc
Confidence            322211111111011110 11111111 111111100            011111111111     12223344456667


Q ss_pred             eEEEEcCCC-eEEEE-eCCCcEE--EEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCCcEE
Q 010037          392 LDLSWSKNG-FLLSS-SADKTVR--LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVV  464 (519)
Q Consensus       392 ~~l~~sp~~-~L~sg-s~Dg~V~--lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~~~~~~~  464 (519)
                      ....|+|++ .++.. ...+...  +.+...+.. ....+........|+| ||+.|+-.+.   ...|.++++..+...
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             cccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            788999999 55544 4444444  445555543 4445666778889999 8998875553   347899999998888


Q ss_pred             eeccCCCceEEEEEee
Q 010037          465 DYTDIREIVSAVCYCP  480 (519)
Q Consensus       465 ~~~~~~~~V~~v~~sp  480 (519)
                      .+......+...+|+|
T Consensus       252 ~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         252 RLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ECCCSSSEEEEEEECC
T ss_pred             EEeCCCCcEEeEEeCC
Confidence            8888888888999998

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.61  E-value=6.2e-07  Score=89.00  Aligned_cols=235  Identities=10%  Similarity=0.001  Sum_probs=136.4

Q ss_pred             cccceeecCCCCeEEe-eecCCeEEEeeCCccccccccccccceee-cCCCCEEEEEEccCCC--EEEEEeCCCc-----
Q 010037          237 RHGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQ--YLASGGEDGT-----  307 (519)
Q Consensus       237 ~~~~~~~sp~g~~las-gs~dg~I~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~--~LaSgs~Dg~-----  307 (519)
                      .......+|||++|++ ...+++|.++|+...+.       .+.+. .+...+..++|+|+|+  |++..+.+..     
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~-------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARIRLDIMKT-------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE-------EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEEECCCCcE-------eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            3334567899999865 45788999999875432       12222 3567899999999998  6655554432     


Q ss_pred             ------------EEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCcccc
Q 010037          308 ------------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (519)
Q Consensus       308 ------------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (519)
                                  +..+|..+.+....+.... .+..+.+.+++...... .........              +.    .
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt-~~nse~~~~--------------id----~  205 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATST-CYNSERAVD--------------LA----G  205 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEE-ESCTTCCSS--------------HH----H
T ss_pred             ccccccccccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEE-ecCCCceEE--------------Ee----c
Confidence                        2345555555444443332 23333333333211111 000000000              00    0


Q ss_pred             ccccceeEeeccCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCCeEE
Q 010037          376 LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVR  454 (519)
Q Consensus       376 ~~~~~~~~~~~h~~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~-sgs~Dg~V~  454 (519)
                      ........+... .....+++.|+|..+..+.++.+.|++......+..+.-......+.++| |+++++ ++..+++|.
T Consensus       206 ~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSP-DGkyl~~~~~~~~tvs  283 (441)
T d1qnia2         206 TMRNDRDWVVVF-NVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSP-DGKYFIANGKLSPTVS  283 (441)
T ss_dssp             HTCSSBCEEEEE-EHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECT-TSCEEEEECTTSSBEE
T ss_pred             cCcceEEEEEeC-CccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECC-CCCEEEEeCCcCCcEE
Confidence            000001111100 11123445677733344557788888888777788887555567899999 888765 567899999


Q ss_pred             EEEcCCCcE------------EeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          455 IWEVRRCQV------------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       455 iwd~~~~~~------------~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      |||+.+.+.            .......-.....+|.++|+.+.+...|..|..|++.
T Consensus       284 v~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         284 VIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            999875321            1111122234556899999988889999999999974

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.61  E-value=1.3e-05  Score=76.34  Aligned_cols=248  Identities=8%  Similarity=-0.014  Sum_probs=141.6

Q ss_pred             eeecCCCCeEEeee-------cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEec
Q 010037          241 ATLKPGDHELTLGQ-------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (519)
Q Consensus       241 ~~~sp~g~~lasgs-------~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~  313 (519)
                      .+|.|+|++.++..       .+|+|..|+............   ....-.+.-..|.|.++++.|+++.....|...+.
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---EVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---EETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC---ccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            68999998876532       256788888765443221110   11111233568999999998888877777888887


Q ss_pred             ccCeeeceeeccCC----CCceEEEeecCCCCeEEeeccCCce-eeeeeeccCCCeeEEEeCCccccccccceeEeeccC
Q 010037          314 IEHERLDGFDVQDT----DPSCLYFTINHLSQLIPIDVDKEKI-DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (519)
Q Consensus       314 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (519)
                      ..............    .+..+.+.+  ...++......... ...........+.++.++...     + ...+..+.
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~--~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-----~-~~~~~~~~  171 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-----Q-MIQVDTAF  171 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-----C-EEEEEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECC--CCCEEEecCccCcccccccceeccCCceEEEEeecC-----c-eeEeeCCc
Confidence            65543221111111    112233322  22333222111000 000001111233344333321     1 12222333


Q ss_pred             CCeeEEEEcCCC-----eE-EEEeCCCcEEEEECCCCeEEE---Ee---c--CCCcEEEEEEeeCCCCEEEEEeCCCeEE
Q 010037          389 SEVLDLSWSKNG-----FL-LSSSADKTVRLWQVGIDRCLR---VF---S--HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (519)
Q Consensus       389 ~~V~~l~~sp~~-----~L-~sgs~Dg~V~lWdl~~~~~~~---~~---~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (519)
                      ...+.++|+|++     .| ++-+..+.|..||+.....+.   .+   .  .......+++.+ +++++++....+.|.
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIE  250 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEE
Confidence            445688898754     34 445677889988876443222   11   1  233467899998 899988888889999


Q ss_pred             EEEcCCCcEEe-eccCCCceEEEEEeeCCCE-EEEEecCCeEEEEECC
Q 010037          455 IWEVRRCQVVD-YTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIK  500 (519)
Q Consensus       455 iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~-l~sgs~dg~v~iwdl~  500 (519)
                      +||...++... .......+++++|.||++. +++.+.+|.|..+++.
T Consensus       251 ~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            99998887654 4444567899999999974 5666678889888875

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.57  E-value=3.4e-05  Score=71.74  Aligned_cols=235  Identities=10%  Similarity=0.157  Sum_probs=136.4

Q ss_pred             cceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCC-CEEEEE-eCCCcEEEEecccC
Q 010037          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASG-GEDGTVRVWKVIEH  316 (519)
Q Consensus       239 ~~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSg-s~Dg~I~iWd~~~~  316 (519)
                      ..++++|+|+.+++-...++|++|+......  ..+.....-.+....-..+.+.++. .++++. +.++.|.+++. .+
T Consensus        26 ~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g  102 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTNNHRIQIFDKEGRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG  102 (279)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTSCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS
T ss_pred             cEEEEcCCCCEEEEECCCCEEEEEeCCCCEE--EEecccCCCcccccccccccccccccccceeccCCccccccccc-cc
Confidence            4589999999888878889999998653211  1110000001122234456665543 344433 34556777765 34


Q ss_pred             eeeceeeccCC-CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe--eccCCCeeE
Q 010037          317 ERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHSSEVLD  393 (519)
Q Consensus       317 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~  393 (519)
                      .....+..... .+..+..  .....++......              ..+.+++..     ++.+..+  ..+......
T Consensus       103 ~~~~~~~~~~~~~p~~~av--d~~G~i~v~~~~~--------------~~~~~~~~~-----g~~~~~~g~~~~~~~~~~  161 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTV--DNKGRIIVVECKV--------------MRVIIFDQN-----GNVLHKFGCSKHLEFPNG  161 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEE--CTTSCEEEEETTT--------------TEEEEECTT-----SCEEEEEECTTTCSSEEE
T ss_pred             cceeecCCCcccccceecc--ccCCcEEEEeecc--------------ceeeEeccC-----Cceeecccccccccccce
Confidence            43333322111 1112222  2222232222211              122222221     2223332  235567888


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCcEEe-e-
Q 010037          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVD-Y-  466 (519)
Q Consensus       394 l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd~~~~~~~~-~-  466 (519)
                      +++.+++ .+++....+.|++||.. ++.+..+.   .......|++.| +++++++-.. ++.|.+|+. +++.+. + 
T Consensus       162 i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~  238 (279)
T d1q7fa_         162 VVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISALE  238 (279)
T ss_dssp             EEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             eeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECC-CCCEEEEEe
Confidence            9999998 77777788999999965 56677775   344688999999 8888877554 457999985 466543 2 


Q ss_pred             -ccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCC
Q 010037          467 -TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKG  501 (519)
Q Consensus       467 -~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~  501 (519)
                       .........|++.|||++ ++++.+..|++|....
T Consensus       239 ~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         239 SKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             ESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSC
T ss_pred             CCCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeee
Confidence             222345789999999975 5556789999998754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.55  E-value=4.3e-06  Score=81.43  Aligned_cols=112  Identities=9%  Similarity=0.102  Sum_probs=74.0

Q ss_pred             CCCeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCe-EE--EEe---cCCCcEEEEEEeeCCCCEEEE-EeCCCeEEEEEc
Q 010037          388 SSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDR-CL--RVF---SHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEV  458 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L~sgs-~Dg~V~lWdl~~~~-~~--~~~---~h~~~V~~v~fsp~d~~~l~s-gs~Dg~V~iwd~  458 (519)
                      ...+.++.|+|+| +|+++. ....|.+|+..... ..  ...   ........++|+| +++++.+ .-.+++|.+|++
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEe
Confidence            3457899999999 666665 34578888765432 22  111   2456789999999 8887755 446889999999


Q ss_pred             CCCcEEe--------ec------------cCCCceEEEEEeeCCCEEEEEec------CCeEEEEECC
Q 010037          459 RRCQVVD--------YT------------DIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIK  500 (519)
Q Consensus       459 ~~~~~~~--------~~------------~~~~~V~~v~~spdg~~l~sgs~------dg~v~iwdl~  500 (519)
                      ...+...        ..            ........+.++|||++|+++..      .+.|..|++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~  290 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec
Confidence            7654221        00            11123567899999999888642      2337677764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.51  E-value=5e-06  Score=80.98  Aligned_cols=116  Identities=15%  Similarity=0.200  Sum_probs=78.3

Q ss_pred             CCCeeEEEEcCCC-eE-EEEeCCCcEEEEECCCCeEEEEe-----c---------------CCCcEEEEEEeeCCCCEEE
Q 010037          388 SSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVF-----S---------------HNNYVTSVAFNPVDDNYFI  445 (519)
Q Consensus       388 ~~~V~~l~~sp~~-~L-~sgs~Dg~V~lWdl~~~~~~~~~-----~---------------h~~~V~~v~fsp~d~~~l~  445 (519)
                      ......++|+|++ ++ ++...+++|.+|++..+......     .               +......+.++| ++++|+
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~ly  270 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMF  270 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEE
Confidence            4567889999999 44 55667899999998765432211     1               122466899999 999988


Q ss_pred             EEeC------CCeEEEEEcCCCcEE-------eeccCCCceEEEEEee-CCCEEEEEe-cCCeEEEEECCCCee
Q 010037          446 SGSI------DGKVRIWEVRRCQVV-------DYTDIREIVSAVCYCP-DGKGGIVGT-MTGNCRFYDIKGMQI  504 (519)
Q Consensus       446 sgs~------Dg~V~iwd~~~~~~~-------~~~~~~~~V~~v~~sp-dg~~l~sgs-~dg~v~iwdl~~~~l  504 (519)
                      ++..      .+.|..|++.....+       ..........+++++| +|++|+++. .++.|.+|++....+
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l  344 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcC
Confidence            7643      234777887653211       1222344567899998 899887764 578899998876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.47  E-value=0.00016  Score=68.45  Aligned_cols=228  Identities=11%  Similarity=0.077  Sum_probs=130.2

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC----CcEEEEecccC
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWKVIEH  316 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D----g~I~iWd~~~~  316 (519)
                      ++|.++|++.++-...++|..|+.......       ..+.........|++.++|+++++...+    +.|...+....
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~-------~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIK-------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEE-------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEE-------EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            689999998888778898988876543211       1123345568899999999977765432    23444444443


Q ss_pred             eeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEE
Q 010037          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (519)
                      .........................++........        ....+.+..+++.     .+.+..+...-...+.|+|
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~--------~~~~g~v~~~~~d-----g~~~~~~~~~~~~pnGia~  184 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS--------TNPLGGVYYVSPD-----FRTVTPIIQNISVANGIAL  184 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT--------TBCCEEEEEECTT-----SCCEEEEEEEESSEEEEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeeccccccc--------ccCcceeEEEecc-----cceeEEEeeccceeeeeee
Confidence            33222221111111111222222233322221111        0111222222221     1222333333345678999


Q ss_pred             cCCC-eE-EEEeCCCcEEEEECCCC-e---EEE-E----ecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEe
Q 010037          397 SKNG-FL-LSSSADKTVRLWQVGID-R---CLR-V----FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (519)
Q Consensus       397 sp~~-~L-~sgs~Dg~V~lWdl~~~-~---~~~-~----~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~  465 (519)
                      +|++ .| ++-+..+.|..|++... .   ... .    +........+++.+ ++++.++....+.|.+||. .++.+.
T Consensus       185 s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l~  262 (319)
T d2dg1a1         185 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIG  262 (319)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEE
T ss_pred             ccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEEE
Confidence            9998 44 56677889999998642 1   111 1    11233467899999 8999999889999999996 576663


Q ss_pred             ec-------cCCCceEEEEEeeCCCEEEEEec
Q 010037          466 YT-------DIREIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       466 ~~-------~~~~~V~~v~~spdg~~l~sgs~  490 (519)
                      ..       .+...+++++|.|++..+++.+.
T Consensus       263 ~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         263 QILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            22       22345789999998887777654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.45  E-value=2.5e-05  Score=71.82  Aligned_cols=231  Identities=8%  Similarity=-0.024  Sum_probs=133.8

Q ss_pred             ceeecCCCCeEEe-eecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037          240 SATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       240 ~~~~sp~g~~las-gs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      .++++++|...++ ....++|..++..........      +.+ ......|+++++|+++++....+.|++++-.+...
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~------~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP------FNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CEEECC------CCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec------cCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            5789999996665 445577777766543322111      111 12346789999999888877777777766544433


Q ss_pred             eceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-eccCCCeeEEEEc
Q 010037          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWS  397 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s  397 (519)
                      ...... ...+..+++..  ...++........              +..+.....     ..... .........+++.
T Consensus        91 ~~~~~~-~~~p~~iavd~--~g~i~v~d~~~~~--------------~~~~~~~~~-----~~~~~~~~~~~~p~~i~~~  148 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAVDT--QGAVYVADRGNNR--------------VVKLAAGSK-----TQTVLPFTGLNDPDGVAVD  148 (260)
T ss_dssp             ECCCCS-CCSEEEEEECT--TCCEEEEEGGGTE--------------EEEECTTCS-----SCEECCCCSCCSCCEEEEC
T ss_pred             eeeeee-eeecccccccc--cceeEeecccccc--------------ccccccccc-----eeeeeeecccCCcceeeec
Confidence            222111 11122333222  2233333222211              111111110     00010 0112345688999


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee-ccCCCceE
Q 010037          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIREIVS  474 (519)
Q Consensus       398 p~~-~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~~~~V~  474 (519)
                      +++ .+++...++.|..++.......... ..-.....|++.+ +++++++....+.|..++......... ...-....
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~  227 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPL  227 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEE
T ss_pred             CCCCEeeeccccccccccccccceeeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeE
Confidence            988 6677777888999998765544332 3556678999999 889888888888999888765543322 22224568


Q ss_pred             EEEEeeCCCEEEEEecCCeEEEEECC
Q 010037          475 AVCYCPDGKGGIVGTMTGNCRFYDIK  500 (519)
Q Consensus       475 ~v~~spdg~~l~sgs~dg~v~iwdl~  500 (519)
                      .|+++++|+++++-..+++|+.++..
T Consensus       228 ~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         228 AVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            99999999877776667777766553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=0.00016  Score=66.12  Aligned_cols=237  Identities=11%  Similarity=0.071  Sum_probs=118.6

Q ss_pred             eecCC--CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC-CC-----cEEEEec
Q 010037          242 TLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG-----TVRVWKV  313 (519)
Q Consensus       242 ~~sp~--g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg-----~I~iWd~  313 (519)
                      .++|+  |+.+|-. .+|.|.+.++..+..        +.+..+.+.+...+|||||++||-... ++     .|.+++.
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~~--------~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGST--------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTTCCE--------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCCCCE--------EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            56888  9988765 456788888875443        235567788899999999999886532 22     3666677


Q ss_pred             ccCeeeceeecc------CCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeecc
Q 010037          314 IEHERLDGFDVQ------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (519)
Q Consensus       314 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (519)
                      .+++........      ........+.++....++........          ........+..     ....  ...+
T Consensus        76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~----------~~~~~~~~~~~-----~~~~--~~~~  138 (281)
T d1k32a2          76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS----------SMTCLYRVEND-----GINF--VPLN  138 (281)
T ss_dssp             TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST----------TCCEEEEEEGG-----GTEE--EECC
T ss_pred             cCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCc----------cceeeeeecCC-----Ccee--EEec
Confidence            666543221110      00111222332221111110000000          00000000000     0111  1112


Q ss_pred             CCCeeEEEEcCCC--eEEEEeCC-----------CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC--Ce
Q 010037          388 SSEVLDLSWSKNG--FLLSSSAD-----------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID--GK  452 (519)
Q Consensus       388 ~~~V~~l~~sp~~--~L~sgs~D-----------g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D--g~  452 (519)
                      ......+ |.+++  .++.....           ....++.....................+.+ + ..+.....+  ..
T Consensus       139 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~  215 (281)
T d1k32a2         139 LGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQ  215 (281)
T ss_dssp             SCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET-T-EEEEEECTTSSCE
T ss_pred             CCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeec-c-ccceecccccccc
Confidence            2222222 33444  33322211           112223333333333333445555566665 3 233333333  35


Q ss_pred             EEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeeccc
Q 010037          453 VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDLST  509 (519)
Q Consensus       453 V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~~~  509 (519)
                      |.++|+.++....+..... .....|+|||+.|+. ..+|.|+++|+.+++...+..
T Consensus       216 l~~~d~~g~~~~~lt~~~~-~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~~i~~  270 (281)
T d1k32a2         216 IYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILF-SKGGSIYIFNPDTEKIEKIEI  270 (281)
T ss_dssp             EEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEE-EETTEEEEECTTTCCEEECCC
T ss_pred             eEEEeCCCCceEEeecCCC-cccccCcCCCCEEEE-EeCCEEEEEECCCCCEEEecc
Confidence            7888888776665444332 223468999998876 457899999999999887754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.07  E-value=0.00051  Score=64.18  Aligned_cols=197  Identities=10%  Similarity=-0.008  Sum_probs=120.8

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCee
Q 010037          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (519)
                      .+..++++|||+++++...+++|..|+....  ...+......+..+.+.++.  .++........+.............
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG--~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNG--DLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTS--CEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCC--CeEEEecCCceEEEEEeccccccee
Confidence            4778999999999999999998888875433  22233333334455544433  3443333333222221111100000


Q ss_pred             EEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-----------CCCcEEE
Q 010037          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----------HNNYVTS  433 (519)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-----------h~~~V~~  433 (519)
                                    .+. ..........+++.+++ ++++.+.++.+..++...+.......           .......
T Consensus       105 --------------~~~-~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1         105 --------------TLL-TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             --------------EEE-ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             --------------ecc-ccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence                          000 11234567899999999 77777788889999988876443321           1234566


Q ss_pred             EEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE---eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +.+..  +.++++.+..+.|..+++......   ...........+++.++|+++++...++.|..|+..+..
T Consensus       170 i~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~  240 (302)
T d2p4oa1         170 LKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST  240 (302)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE
T ss_pred             ccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE
Confidence            76653  556667778889999988764322   122223345679999999988887788999999887653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.04  E-value=0.0014  Score=61.63  Aligned_cols=201  Identities=11%  Similarity=0.120  Sum_probs=114.8

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCee
Q 010037          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (519)
                      .+..++|.++|++.++-...+.|..|+..++.....+......+..+.+.++  ..++.+......          ....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d--G~l~va~~~~~~----------~~~~  108 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD--GRLFVCYLGDFK----------STGG  108 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT--SCEEEEECTTSS----------SCCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC--CCEEEEecCCCc----------ccee
Confidence            4568899999997777778888988888776544443333333344444333  223322211100          1111


Q ss_pred             EEEeCCccccccccceeEeec---cCCCeeEEEEcCCCeEEEEeCC-------CcEEEEECCCCeEEEEecCCCcEEEEE
Q 010037          366 CVVLPPKVFRLLEKPLHEFQG---HSSEVLDLSWSKNGFLLSSSAD-------KTVRLWQVGIDRCLRVFSHNNYVTSVA  435 (519)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~L~sgs~D-------g~V~lWdl~~~~~~~~~~h~~~V~~v~  435 (519)
                      +...+....     .+..+..   -......+++.++|.|+.+...       +.+..++...+........-...+.|+
T Consensus       109 i~~~~~~~~-----~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia  183 (319)
T d2dg1a1         109 IFAATENGD-----NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIA  183 (319)
T ss_dssp             EEEECTTSC-----SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEE
T ss_pred             EEEEcCCCc-----eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeee
Confidence            222222111     1111111   1234678999999955444332       235555544444333333334568899


Q ss_pred             EeeCCCCEE-EEEeCCCeEEEEEcCCC-cEE--------eeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCee
Q 010037          436 FNPVDDNYF-ISGSIDGKVRIWEVRRC-QVV--------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQI  504 (519)
Q Consensus       436 fsp~d~~~l-~sgs~Dg~V~iwd~~~~-~~~--------~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l  504 (519)
                      |+| +++.| ++-+..+.|..|++... ...        ...........+++.++|++.++....|.|.+||..+..+
T Consensus       184 ~s~-dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l  261 (319)
T d2dg1a1         184 LST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPI  261 (319)
T ss_dssp             ECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEE
T ss_pred             ecc-ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEE
Confidence            999 77755 55567889999998642 111        1112223356899999999888888899999999754333

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.02  E-value=0.00094  Score=61.50  Aligned_cols=194  Identities=11%  Similarity=0.130  Sum_probs=118.6

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCC------CceEEEeecCCCCeEEeeccCCceeeeeeec
Q 010037          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTD------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (519)
                      ....|+++++|+.+++-..+..|++||.. ++.+..+......      +..+.+.......++..              
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------------   88 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE--------------   88 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE--------------
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceec--------------
Confidence            35789999999988887778899999964 5544444221110      11111111111111111              


Q ss_pred             cCCCeeEEEeCCccccccccceeEee-ccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec---CCCcEEEE
Q 010037          360 KSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSV  434 (519)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~---h~~~V~~v  434 (519)
                      ......+..++..     ++....+. ........++..+++ ++++....+.+.+++.. ++.+..+.   +......+
T Consensus        89 ~~~~~~i~~~~~~-----g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i  162 (279)
T d1q7fa_          89 RSPTHQIQIYNQY-----GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGV  162 (279)
T ss_dssp             CGGGCEEEEECTT-----SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred             cCCcccccccccc-----ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccccccccccee
Confidence            1111122222211     22222332 234567789999988 66666666778888754 55666663   66778899


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec--cCCCceEEEEEeeCCCEEEEEec-CCeEEEEECCC
Q 010037          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKG  501 (519)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~~spdg~~l~sgs~-dg~v~iwdl~~  501 (519)
                      ++.+ +++++++....+.|++||.....+..+.  +.......|++.|+|+++++-.. ++.|.+|+...
T Consensus       163 ~~d~-~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G  231 (279)
T d1q7fa_         163 VVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  231 (279)
T ss_dssp             EECS-SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             eecc-ceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC
Confidence            9999 8888888888999999998654433332  23445789999999997766544 45699998643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=8.6e-05  Score=74.41  Aligned_cols=199  Identities=12%  Similarity=0.095  Sum_probs=115.6

Q ss_pred             eecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeC---------CCcEEEEe
Q 010037          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRVWK  312 (519)
Q Consensus       242 ~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~---------Dg~I~iWd  312 (519)
                      .|.+++.++. -..+|.|.+|++.......  +.....+  ..-.+....||||+++|+....         .+.+.++|
T Consensus        23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~--l~~~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          23 KWISDTEFIY-REQKGTVRLWNVETNTSTV--LIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CBSSSSCBCC-CCSSSCEEEBCGGGCCCEE--EECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             EEeCCCcEEE-EeCCCcEEEEECCCCCEEE--EEcCccc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            4666766554 3457889999987554321  1111111  2235667889999999887643         34555666


Q ss_pred             cccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCee
Q 010037          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (519)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (519)
                      +.++....                                                            +.........+.
T Consensus        98 ~~~~~~~~------------------------------------------------------------l~~~~~~~~~l~  117 (465)
T d1xfda1          98 IPHGDPQS------------------------------------------------------------LDPPEVSNAKLQ  117 (465)
T ss_dssp             SSSCCCEE------------------------------------------------------------CCCTTCCSCCCS
T ss_pred             ccCCceee------------------------------------------------------------ccCccCCccccc
Confidence            65543211                                                            111111233455


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec--CCCc-----------------EEEEEEeeCCCCEEEEEeCC-C
Q 010037          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNY-----------------VTSVAFNPVDDNYFISGSID-G  451 (519)
Q Consensus       393 ~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~--h~~~-----------------V~~v~fsp~d~~~l~sgs~D-g  451 (519)
                      ...|+|+| .|+-.. ++.|.+.+..++..++...  ....                 -..+.|+| |+++||....| .
T Consensus       118 ~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s  195 (465)
T d1xfda1         118 YAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDS  195 (465)
T ss_dssp             BCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECT
T ss_pred             eeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEeccc
Confidence            67899999 666554 5678888887776655543  1111                 24678999 99999876532 2


Q ss_pred             e---------------------------------EEEEEcCCCcEEe-------eccCCCceEEEEEeeCCCEEEEEec-
Q 010037          452 K---------------------------------VRIWEVRRCQVVD-------YTDIREIVSAVCYCPDGKGGIVGTM-  490 (519)
Q Consensus       452 ~---------------------------------V~iwd~~~~~~~~-------~~~~~~~V~~v~~spdg~~l~sgs~-  490 (519)
                      .                                 +.|+|+.++....       .......+..+.|+|++++++.... 
T Consensus       196 ~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR  275 (465)
T d1xfda1         196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR  275 (465)
T ss_dssp             TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred             ccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcc
Confidence            2                                 3344443332110       0111224678999999986665433 


Q ss_pred             C---CeEEEEECCCCeeeec
Q 010037          491 T---GNCRFYDIKGMQIFDL  507 (519)
Q Consensus       491 d---g~v~iwdl~~~~l~~~  507 (519)
                      +   ..+.++|+.++++..+
T Consensus       276 ~q~~~~i~~~d~~tg~~~~~  295 (465)
T d1xfda1         276 AQNVSILTLCDATTGVCTKK  295 (465)
T ss_dssp             TSCEEEEEEEETTTCCEEEE
T ss_pred             ccccceEEEEcCCCCcEEEE
Confidence            2   2588899998876544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.89  E-value=0.00076  Score=61.44  Aligned_cols=197  Identities=11%  Similarity=-0.020  Sum_probs=114.8

Q ss_pred             CCEEEEEEccCCCEEEEE-eCCCcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCC
Q 010037          285 GSILTMKFSLDGQYLASG-GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (519)
Q Consensus       285 ~~I~~l~fspdg~~LaSg-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  363 (519)
                      -.-..|++.++|+..++. +..+.|..++................+..+++....  .++....              ..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g--~i~v~d~--------------~~   77 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG--TVYVTDF--------------NN   77 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTC--CEEEEET--------------TT
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCC--CEEEeee--------------ee
Confidence            345799999999966554 455777777665443222211112233444443322  2332221              11


Q ss_pred             eeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ecCCCcEEEEEEeeCCC
Q 010037          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDD  441 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~-~~h~~~V~~v~fsp~d~  441 (519)
                      ..+.+++.....    .+.. ........++++.+++ ++++-.....+..++......... .........|+++| ++
T Consensus        78 ~~i~~~~~~~~~----~~~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g  151 (260)
T d1rwia_          78 RVVTLAAGSNNQ----TVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SG  151 (260)
T ss_dssp             EEEEECTTCSCC----EECC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TC
T ss_pred             ceeeeeeeccce----eeee-eeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CC
Confidence            222222211110    0111 1123457889999988 555555566677777655432221 12334567899999 88


Q ss_pred             CEEEEEeCCCeEEEEEcCCCcEEeec-cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          442 NYFISGSIDGKVRIWEVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       442 ~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      +++++...++.|..+|.......... ..-.....+++.++|+++++....+.|..++..+..
T Consensus       152 ~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~  214 (260)
T d1rwia_         152 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  214 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred             CEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence            98888888899999998876555432 344567899999999988888778889888876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.79  E-value=0.0032  Score=58.41  Aligned_cols=194  Identities=13%  Similarity=0.101  Sum_probs=122.9

Q ss_pred             eecCC-CCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeec
Q 010037          242 TLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (519)
Q Consensus       242 ~~sp~-g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~  320 (519)
                      .|++. +.+..+--..++|.-|+...+....         ......+.++++.++|.++++ +.+ -|.++|..+++...
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~---------~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRKTV---------HALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTL   92 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEEE---------EECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEE
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeEEE---------EECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeE
Confidence            46654 4444444466788888877544321         123456889999999877665 455 48888887765321


Q ss_pred             eeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC
Q 010037          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (519)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  400 (519)
                      ......                                                          ......++++.+.|+|
T Consensus        93 l~~~~~----------------------------------------------------------~~~~~~~nd~~vd~~G  114 (295)
T d2ghsa1          93 HAELES----------------------------------------------------------DLPGNRSNDGRMHPSG  114 (295)
T ss_dssp             EECSST----------------------------------------------------------TCTTEEEEEEEECTTS
T ss_pred             Eeeeec----------------------------------------------------------CCCcccceeeEECCCC
Confidence            110000                                                          0012246778888888


Q ss_pred             eEEEEeC-----CCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCC-EEEEEeCCCeEEEEEcCCCc------E---Ee
Q 010037          401 FLLSSSA-----DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQ------V---VD  465 (519)
Q Consensus       401 ~L~sgs~-----Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~iwd~~~~~------~---~~  465 (519)
                      .|..++.     .+.-.+|.+..++....+..-...+.++|+| +++ ++++-+..+.|..|++....      .   ..
T Consensus       115 ~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~  193 (295)
T d2ghsa1         115 ALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID  193 (295)
T ss_dssp             CEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             CEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEec
Confidence            4444432     2345677777777666665555678999999 666 45566678899999875321      1   12


Q ss_pred             eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       466 ~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      ..........+++..+|++.++.-..|.|..||..+..+.
T Consensus       194 ~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~  233 (295)
T d2ghsa1         194 STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIA  233 (295)
T ss_dssp             CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEE
T ss_pred             cCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEee
Confidence            3344556788999999997777667888999997654443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.69  E-value=0.0045  Score=57.93  Aligned_cols=202  Identities=10%  Similarity=0.099  Sum_probs=108.7

Q ss_pred             ceeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecC-CCCEEEEEEccCCCEEEEEeCC-------------
Q 010037          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGED-------------  305 (519)
Q Consensus       240 ~~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~LaSgs~D-------------  305 (519)
                      .++|.+++..++++...+.|...+...........    ...+. -...+.+++.++|++.+|-...             
T Consensus        75 Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~----~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKK----DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEECSSSSEEEEEETTTEEEEEETTSCEEECCSB----CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             eEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEec----cccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence            47899999988887777778888876443322110    00111 1135789999999987764221             


Q ss_pred             CcEEEEecccCeeeceeeccCCCCceEEEeecCCC---CeEEeeccCCceeeeeeeccCCCeeEEEeCCcc-ccccc-cc
Q 010037          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS---QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLLE-KP  380 (519)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~-~~  380 (519)
                      ..-+||.+........+......+..+.+.+....   .++.....              ...+..++... ..+.. +.
T Consensus       151 ~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~--------------~~~i~~~d~~~~g~~~~~~~  216 (314)
T d1pjxa_         151 KFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP--------------TKKLWSYDIKGPAKIENKKV  216 (314)
T ss_dssp             SCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT--------------TTEEEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeec--------------ccceEEeeccCccccceeeE
Confidence            11133333221111111111112233444443221   12222222              22222221110 00000 01


Q ss_pred             eeEeec-cCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCC-EEEEEeCCCeEEEE
Q 010037          381 LHEFQG-HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDGKVRIW  456 (519)
Q Consensus       381 ~~~~~~-h~~~V~~l~~sp~~-~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~iw  456 (519)
                      ...+.+ +......|++..+| ++++....+.|.+||...++.+..+. ....+++++|.| +++ ++++.+.+|.|...
T Consensus       217 ~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         217 WGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred             EEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeC-CCCEEEEEECCCCcEEEE
Confidence            111222 22345679999999 55666678899999998887776665 456789999999 765 66777788888888


Q ss_pred             EcCC
Q 010037          457 EVRR  460 (519)
Q Consensus       457 d~~~  460 (519)
                      ++..
T Consensus       296 ~~~~  299 (314)
T d1pjxa_         296 EWQR  299 (314)
T ss_dssp             ECSS
T ss_pred             ECCC
Confidence            8653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.54  E-value=0.013  Score=53.98  Aligned_cols=98  Identities=8%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             CeeEEEEcCCC--eEEEEeCCCcEEEEECCCC------eE-E-EEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGID------RC-L-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       390 ~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~------~~-~-~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      ..+.++|++++  .+++-+..+.|..|++...      +. + ..+ ........+++.. ++++.++.-..+.|..||.
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecC
Confidence            45678999988  5566777888999987431      11 1 111 1455688899998 8998888878899999996


Q ss_pred             CCCcEEe-eccCCCceEEEEEe-eCCCEEEEEe
Q 010037          459 RRCQVVD-YTDIREIVSAVCYC-PDGKGGIVGT  489 (519)
Q Consensus       459 ~~~~~~~-~~~~~~~V~~v~~s-pdg~~l~sgs  489 (519)
                      . ++.+. +.-....++++||- ||.+.|++.+
T Consensus       228 ~-G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         228 D-GNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             T-CCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             C-CcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            4 65554 44444679999996 6776665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.046  Score=53.75  Aligned_cols=242  Identities=10%  Similarity=0.073  Sum_probs=120.6

Q ss_pred             eeecCCCCeEEeee---------cCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 010037          241 ATLKPGDHELTLGQ---------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (519)
Q Consensus       241 ~~~sp~g~~lasgs---------~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iW  311 (519)
                      ..|+||+++++...         ..+.+.|+|+..+....  +.   ........+....|||||+.||-.. ++.|.+.
T Consensus        66 ~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~--l~---~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--LD---PPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--CC---CTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             eEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee--cc---CccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            46899999887753         35678888887554321  11   0112334566689999999998875 5678888


Q ss_pred             ecccCeeeceeeccCC------------------CCceEEEeecCCCCeEEeeccCCceeeeee----------------
Q 010037          312 KVIEHERLDGFDVQDT------------------DPSCLYFTINHLSQLIPIDVDKEKIDKTKS----------------  357 (519)
Q Consensus       312 d~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  357 (519)
                      +..++...+.......                  ....+.|++++...++. ..+...+.....                
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~-~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA-AINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE-EEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE-Eecccccceeecccccccccceeeeeec
Confidence            8766654333221111                  12344566655443332 222111111100                


Q ss_pred             -eccCC--CeeEEEeCCccccc--cccceeEeeccCCCeeEEEEcCCC-eEEE-EeCC---CcEEEEECCCCeEEEEec-
Q 010037          358 -LRKSS--DLTCVVLPPKVFRL--LEKPLHEFQGHSSEVLDLSWSKNG-FLLS-SSAD---KTVRLWQVGIDRCLRVFS-  426 (519)
Q Consensus       358 -~~~s~--~~~~~~~~~~~~~~--~~~~~~~~~~h~~~V~~l~~sp~~-~L~s-gs~D---g~V~lWdl~~~~~~~~~~-  426 (519)
                       ..+..  ...+.+++......  ...+.........-+..+.|+|++ .++. ...+   ..|.++|..++++...+. 
T Consensus       219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e  298 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence             01111  11222332211100  000111111122346788999999 3333 2322   358889999998776654 


Q ss_pred             -CCCcE----EEEEEeeCCCCEE--EEEe-CCC--eEEEEEcC-------CCcEEeeccCCCceEEE-EEeeCCCEEE-E
Q 010037          427 -HNNYV----TSVAFNPVDDNYF--ISGS-IDG--KVRIWEVR-------RCQVVDYTDIREIVSAV-CYCPDGKGGI-V  487 (519)
Q Consensus       427 -h~~~V----~~v~fsp~d~~~l--~sgs-~Dg--~V~iwd~~-------~~~~~~~~~~~~~V~~v-~~spdg~~l~-s  487 (519)
                       ....|    ....|.| ++..+  +..+ .+|  .+....+.       ...+..+....-.|+.+ +|.++++.|. +
T Consensus       299 ~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~  377 (465)
T d1xfda1         299 ESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL  377 (465)
T ss_dssp             ECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred             cCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEE
Confidence             33322    3457888 66632  2222 333  34443332       12222344444456664 6888887765 4


Q ss_pred             Eec
Q 010037          488 GTM  490 (519)
Q Consensus       488 gs~  490 (519)
                      +..
T Consensus       378 a~~  380 (465)
T d1xfda1         378 STE  380 (465)
T ss_dssp             ESS
T ss_pred             EeC
Confidence            443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.64  E-value=0.013  Score=52.58  Aligned_cols=110  Identities=10%  Similarity=0.109  Sum_probs=76.4

Q ss_pred             EEcCC--C-eEEEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-C-----CeEEEEEcCCCcEEe
Q 010037          395 SWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-D-----GKVRIWEVRRCQVVD  465 (519)
Q Consensus       395 ~~sp~--~-~L~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-D-----g~V~iwd~~~~~~~~  465 (519)
                      ..+|+  | .++-.+ ++.|.+.|+.+++..+...+...+...+|+| ||+.||.... +     ..|.++++.+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35677  7 555443 4568888999999877767888899999999 9998885432 2     248888888887765


Q ss_pred             eccCC-------CceEEEEEeeCCCEEEEEecC------CeEEEEECCCCeeee
Q 010037          466 YTDIR-------EIVSAVCYCPDGKGGIVGTMT------GNCRFYDIKGMQIFD  506 (519)
Q Consensus       466 ~~~~~-------~~V~~v~~spdg~~l~sgs~d------g~v~iwdl~~~~l~~  506 (519)
                      +....       .....+.|+|||+.|+.....      ..+...+..++....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP  136 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE
Confidence            43332       345678999999998875432      235566666555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.55  E-value=0.13  Score=49.09  Aligned_cols=198  Identities=12%  Similarity=0.145  Sum_probs=114.9

Q ss_pred             EEEEeCCCcEEEEecccCeeeceeeccCCCCce--------------------EEEe---------ecCCCCeEEeeccC
Q 010037          299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC--------------------LYFT---------INHLSQLIPIDVDK  349 (519)
Q Consensus       299 LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~--------------------~~~~---------~~~~~~~~~~~~~~  349 (519)
                      +.|||..|.|+|+-+.+++.+..+..-......                    ..+.         .....-. .++...
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP-~~S~Td   94 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV-HMSFTE   94 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE-EEEEET
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC-cccccC
Confidence            678889999999999988877666543221100                    0000         0011111 122222


Q ss_pred             Cc-eeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEcCCC---eEEEEeCCC----------------
Q 010037          350 EK-IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADK----------------  409 (519)
Q Consensus       350 ~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~L~sgs~Dg----------------  409 (519)
                      +. -.++..+....+..+.+++...++...  +.++ .....+..+...++.   +++..+.+.                
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~k--Ii~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y  171 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDA--ILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  171 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEE--EEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-E
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeE--EEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhc
Confidence            22 234444555566677777776655321  1111 123345555554433   777766532                


Q ss_pred             --cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---------------eEEEEEc--------------
Q 010037          410 --TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---------------KVRIWEV--------------  458 (519)
Q Consensus       410 --~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---------------~V~iwd~--------------  458 (519)
                        .+.++|..+.+....+.-......+.++| +++++++.+.+.               .+.+++.              
T Consensus       172 ~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~e  250 (459)
T d1fwxa2         172 VNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  250 (459)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             ceEEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEE
Confidence              36788999988887777666677899999 899988877542               2444443              


Q ss_pred             ---------CCC---cEEeeccCCCceEEEEEeeCCCEEEEEe-cCCeEEEEECCC
Q 010037          459 ---------RRC---QVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKG  501 (519)
Q Consensus       459 ---------~~~---~~~~~~~~~~~V~~v~~spdg~~l~sgs-~dg~v~iwdl~~  501 (519)
                               ++.   ..+.+.........+..+|||+++++++ .+.++-|+|++.
T Consensus       251 ingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         251 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             ETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             eCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                     211   1112222233455689999999988765 488899999963

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.58  E-value=0.47  Score=47.47  Aligned_cols=79  Identities=8%  Similarity=-0.027  Sum_probs=53.9

Q ss_pred             CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE--EEEEeeCCC-EE
Q 010037          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS--AVCYCPDGK-GG  485 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~--~v~~spdg~-~l  485 (519)
                      |.|.-+|+.+++.+-......+..+=.... .+.++++|+.||.++-+|.++++.+-.......+.  -+.|..||+ +|
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            578889999999887765443332222233 56788889999999999999999994333333332  367777996 44


Q ss_pred             EEE
Q 010037          486 IVG  488 (519)
Q Consensus       486 ~sg  488 (519)
                      ++.
T Consensus       523 ~v~  525 (571)
T d2ad6a1         523 GSM  525 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.57  E-value=0.76  Score=42.57  Aligned_cols=74  Identities=11%  Similarity=0.079  Sum_probs=47.2

Q ss_pred             eeecCCCCeEEeeecCC-----------eEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCC-CcE
Q 010037          241 ATLKPGDHELTLGQRMR-----------RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GTV  308 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg-----------~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~D-g~I  308 (519)
                      .+...+|+.++.|+...           .+.+||...........    ....|........+.++|++++.|+.+ ..+
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----TVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----EECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----CCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            34556788888776421           36789887655321110    112233333456788999999988765 589


Q ss_pred             EEEecccCee
Q 010037          309 RVWKVIEHER  318 (519)
Q Consensus       309 ~iWd~~~~~~  318 (519)
                      .+||..+..-
T Consensus       101 ~~yd~~~~~w  110 (387)
T d1k3ia3         101 SLYDSSSDSW  110 (387)
T ss_dssp             EEEEGGGTEE
T ss_pred             eEecCccCcc
Confidence            9999987764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.25  E-value=0.94  Score=45.12  Aligned_cols=55  Identities=13%  Similarity=0.031  Sum_probs=36.4

Q ss_pred             CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       451 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |.|.-+|+.+++++-.........+-...-.|.++++|+.||.++-+|.++|+.+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence            4677788888887732222222222122335667888999999999999998753

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.98  E-value=0.46  Score=44.07  Aligned_cols=79  Identities=13%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             cEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEE-EeCCCeEEEEEcCCCcEE---eeccCCCceEEEEEeeCCCEE
Q 010037          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGG  485 (519)
Q Consensus       410 ~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~s-gs~Dg~V~iwd~~~~~~~---~~~~~~~~V~~v~~spdg~~l  485 (519)
                      +..+|....+........-...+.|+++| ++++|+. -+..++|++|++.....+   .........-.+.+.+++..+
T Consensus       187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~-d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             CEEEEEECSSCEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             ceeEEEEcCCceEEEcCCCCccceeEECC-CCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence            34455545554444444456789999999 7766654 456789999999754322   333455667778887643334


Q ss_pred             EEEe
Q 010037          486 IVGT  489 (519)
Q Consensus       486 ~sgs  489 (519)
                      .+++
T Consensus       266 wva~  269 (340)
T d1v04a_         266 WVGC  269 (340)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.61  E-value=1.4  Score=38.95  Aligned_cols=234  Identities=7%  Similarity=-0.059  Sum_probs=119.2

Q ss_pred             eEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEecccCeeeceeeccCC
Q 010037          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEHERLDGFDVQDT  327 (519)
Q Consensus       249 ~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSg-s~Dg~I~iWd~~~~~~~~~~~~~~~  327 (519)
                      +|+.+.. +.|+-.+++.....  .......+..+...|..|+|.+..+.|.-. ..++.|+..++........+.....
T Consensus         3 fLl~s~~-~~I~~~~ld~~~~~--~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~   79 (263)
T d1npea_           3 HLLFAQT-GKIERLPLERNTMK--KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (263)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBC--GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             EEEEeCC-CeEEEEECCCcccc--ccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence            4444333 45666666533321  111222234455568889999876666554 4567788888765543333322222


Q ss_pred             CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-eccCCCeeEEEEcCCC-eEE-E
Q 010037          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKNG-FLL-S  404 (519)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~L~-s  404 (519)
                      .+..+++.... ..++.......              .+...+..     +.....+ ......+..++..|.. +|+ +
T Consensus        80 ~p~~iAvD~~~-~~lY~~d~~~~--------------~I~~~~~d-----g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_          80 SPEGIALDHLG-RTIFWTDSQLD--------------RIEVAKMD-----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             CEEEEEEETTT-TEEEEEETTTT--------------EEEEEETT-----SCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             cccEEEEeccC-CeEEEeccCCC--------------EEEEEecC-----CceEEEEecccccCCcEEEEecccCcEEEe
Confidence            23333332211 12222221111              11111111     1111112 2223567899999876 444 3


Q ss_pred             EeCCCcEEEE--ECCCCeEEEEec-CCCcEEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCcEEeeccCCCceEEEEEee
Q 010037          405 SSADKTVRLW--QVGIDRCLRVFS-HNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP  480 (519)
Q Consensus       405 gs~Dg~V~lW--dl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp  480 (519)
                      -...+..+||  ++.......... .-...+.|++.+ ..+.| .+-...++|...++................++++. 
T Consensus       140 ~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~-~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-  217 (263)
T d1npea_         140 DWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-  217 (263)
T ss_dssp             ECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-
T ss_pred             ecCCCCcEEEEecCCCCCceeeeeecccccceEEEee-cCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-
Confidence            3332333444  555443333332 335678999998 55555 44456789999999876544322222234577775 


Q ss_pred             CCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          481 DGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       481 dg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                      ++.+.++-...+.|...|..+++..+.
T Consensus       218 ~~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         218 GKNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCccceE
Confidence            344444444668899999988876543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.56  E-value=0.51  Score=43.76  Aligned_cols=101  Identities=12%  Similarity=0.154  Sum_probs=61.8

Q ss_pred             eEEEEe---CCCcEEEEECCCC--eE--EEEec--CCCcEEEEEEeeCCCCEEEEEeC---------------CCeEEEE
Q 010037          401 FLLSSS---ADKTVRLWQVGID--RC--LRVFS--HNNYVTSVAFNPVDDNYFISGSI---------------DGKVRIW  456 (519)
Q Consensus       401 ~L~sgs---~Dg~V~lWdl~~~--~~--~~~~~--h~~~V~~v~fsp~d~~~l~sgs~---------------Dg~V~iw  456 (519)
                      +|+...   ...+|-+|++...  +.  +.++.  .....+.|++.. ++.+++|-..               -+...+|
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            454443   3466888876533  22  22333  335688999998 8888887321               1233444


Q ss_pred             EcCCCcEEeeccCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECCCC
Q 010037          457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKGM  502 (519)
Q Consensus       457 d~~~~~~~~~~~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~~~  502 (519)
                      ....+........-...+.|+++||+++|+++ +..+.|++|++...
T Consensus       192 ~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         192 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             EEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            44444433333334567899999999887665 45778999998754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.35  E-value=2.9  Score=41.62  Aligned_cols=55  Identities=15%  Similarity=0.082  Sum_probs=38.5

Q ss_pred             CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       451 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |.|.-||+.+++++-...+..++.+-..+-.|.+++.|+.||.++.||..+|+++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence            4678888888887733333333333333446778888999999999999999753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.22  E-value=0.83  Score=45.63  Aligned_cols=80  Identities=10%  Similarity=0.062  Sum_probs=55.8

Q ss_pred             CCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCce--EEEEEeeCCC-E
Q 010037          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGK-G  484 (519)
Q Consensus       408 Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V--~~v~~spdg~-~  484 (519)
                      .|.|.-+|+.+++.+-.+....++..-.... .+.++++|+.||.++-+|..+++++-.......+  .-+.|..+|+ +
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678889999999888776444444333344 6778888999999999999999999432222222  2267788995 4


Q ss_pred             EEEE
Q 010037          485 GIVG  488 (519)
Q Consensus       485 l~sg  488 (519)
                      +++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.16  E-value=1.7  Score=41.13  Aligned_cols=70  Identities=13%  Similarity=0.149  Sum_probs=49.7

Q ss_pred             cEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCc------------EEeeccCCCceEEEEEeeCCCEEEEEecCCeEEE
Q 010037          430 YVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQ------------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF  496 (519)
Q Consensus       430 ~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~------------~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~i  496 (519)
                      ....+.++| ||+|+++++ .+.+|.|+|+++-.            ++......-.....+|...|....+---|..|.-
T Consensus       276 sPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~k  354 (459)
T d1fwxa2         276 NPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVK  354 (459)
T ss_dssp             SCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred             CCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEE
Confidence            345689999 888877665 58899999997421            1222233444566788888866666678999999


Q ss_pred             EECC
Q 010037          497 YDIK  500 (519)
Q Consensus       497 wdl~  500 (519)
                      |++.
T Consensus       355 w~~~  358 (459)
T d1fwxa2         355 WNIE  358 (459)
T ss_dssp             EEHH
T ss_pred             Eecc
Confidence            9984

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.92  E-value=0.67  Score=42.98  Aligned_cols=113  Identities=14%  Similarity=0.088  Sum_probs=71.6

Q ss_pred             eEEEEcCCC-eEEEEeCC-CcEEEEECCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CeEEEEEcCCC
Q 010037          392 LDLSWSKNG-FLLSSSAD-KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRRC  461 (519)
Q Consensus       392 ~~l~~sp~~-~L~sgs~D-g~V~lWdl~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~D------g~V~iwd~~~~  461 (519)
                      ...++.+++ +++.|+.+ ..+.+||..+......-.  ....-.+.+..+ ++.+++.|+.+      ..+.+||..+.
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCC
Confidence            345677888 66666544 689999999887654332  222234556666 88998888753      36899999876


Q ss_pred             cEEeeccC---------------CCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          462 QVVDYTDI---------------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       462 ~~~~~~~~---------------~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      +-......               ...-..+..-++|+.++.+...+.+.+++..+....
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence            53221110               001112334467888888888888888888776543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.91  E-value=0.7  Score=45.97  Aligned_cols=80  Identities=6%  Similarity=0.102  Sum_probs=55.3

Q ss_pred             CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE--EEEEeeCCC-EE
Q 010037          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS--AVCYCPDGK-GG  485 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~--~v~~spdg~-~l  485 (519)
                      |.|.-||+.+++.+-.+........-.+.- .+.++++|+.||.++.+|..+++.+-.......+.  -+.|..+|+ +|
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578889999999888776444443333344 57788899999999999999999994322222222  256777885 55


Q ss_pred             EEEe
Q 010037          486 IVGT  489 (519)
Q Consensus       486 ~sgs  489 (519)
                      ++..
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.80  E-value=2.2  Score=38.27  Aligned_cols=219  Identities=14%  Similarity=0.199  Sum_probs=125.3

Q ss_pred             CCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCeeeceeeccCCCCceEEEe
Q 010037          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT  335 (519)
Q Consensus       256 dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~  335 (519)
                      ..+|.|-|+.+.......     .+.+     -+.-.+|..+.||--+ ..++.|+|+++.+.++.+...+.   .++|.
T Consensus        44 ~~~VvIidl~n~~~~~Rr-----pi~A-----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~---VvfWk  109 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRR-----PISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWK  109 (327)
T ss_dssp             EEEEEEEETTSTTSCEEE-----ECCC-----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEE
T ss_pred             CceEEEEECCCCCcceec-----ccch-----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC---cEEEE
Confidence            357888888754432111     1111     1234567777776655 45899999999999888877664   35555


Q ss_pred             ecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccC----CCeeEEEEcCCC-eE-EEE--e-
Q 010037          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS----SEVLDLSWSKNG-FL-LSS--S-  406 (519)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~V~~l~~sp~~-~L-~sg--s-  406 (519)
                      .-....+..+.                ...++-|+...   ...|.+.+..|.    ..|..-..+++. ++ ++|  . 
T Consensus       110 Wis~~~L~lVT----------------~taVYHW~~~g---~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~  170 (327)
T d1utca2         110 WISLNTVALVT----------------DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  170 (327)
T ss_dssp             ESSSSEEEEEC----------------SSEEEEEESSS---SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEE
T ss_pred             ecCCCEEEEEc----------------CCceEEEcccC---CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecC
Confidence            54444333221                12333443311   123555555543    466667777777 33 333  1 


Q ss_pred             ---CCCcEEEEECCCCeEEEEecCCCcEEEEEEee--CCCCEEEE---EeCCCeEEEEEcCCCc---------EEee-c-
Q 010037          407 ---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP--VDDNYFIS---GSIDGKVRIWEVRRCQ---------VVDY-T-  467 (519)
Q Consensus       407 ---~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp--~d~~~l~s---gs~Dg~V~iwd~~~~~---------~~~~-~-  467 (519)
                         -.|.+.||.++.+.....-.|......+.+.-  ....+|+.   +...++++|.++....         .+.. . 
T Consensus       171 ~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fp  250 (327)
T d1utca2         171 QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  250 (327)
T ss_dssp             TTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred             CCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECC
Confidence               23678899988765544333433333332211  00112222   2234689999986521         1111 1 


Q ss_pred             --cCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeeeec
Q 010037          468 --DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIFDL  507 (519)
Q Consensus       468 --~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~~~  507 (519)
                        ...+-.-++..++.-..+..-+.-|.+++||+.++.++..
T Consensus       251 pea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         251 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             TTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEE
Confidence              1234456788888888899999999999999999987654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.79  E-value=0.45  Score=47.91  Aligned_cols=78  Identities=9%  Similarity=0.038  Sum_probs=53.5

Q ss_pred             CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCc--eEEEEEeeCCC-EE
Q 010037          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI--VSAVCYCPDGK-GG  485 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~--V~~v~~spdg~-~l  485 (519)
                      |.|.-||+.+++.+-...+...+..=.+.. .+.+++.|+.||.++.+|.++++++-.......  -.-+.|..||+ ||
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            678999999999877665444433333344 677888899999999999999999943222222  22356777886 44


Q ss_pred             EE
Q 010037          486 IV  487 (519)
Q Consensus       486 ~s  487 (519)
                      ++
T Consensus       532 av  533 (596)
T d1w6sa_         532 AI  533 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.47  E-value=4  Score=40.16  Aligned_cols=55  Identities=13%  Similarity=0.137  Sum_probs=39.7

Q ss_pred             CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       451 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |.|.-||+.+++++-.........+-.+.-.|.++++|+.||.++.||..+|+++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence            5688889999988843333333333334446778889999999999999998754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.42  E-value=0.58  Score=46.79  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=53.5

Q ss_pred             CcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeeccCCCceE--EEEEeeCCC-EE
Q 010037          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS--AVCYCPDGK-GG  485 (519)
Q Consensus       409 g~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~--~v~~spdg~-~l  485 (519)
                      |.|.-||+.+++.+-.+.+..+...=...- .+.++++|+.||.++.+|.++++.+-.......+.  -+.|..||+ +|
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            468889999999887776444333222333 67888899999999999999999994332222222  256677886 44


Q ss_pred             EEE
Q 010037          486 IVG  488 (519)
Q Consensus       486 ~sg  488 (519)
                      ++.
T Consensus       536 ~v~  538 (573)
T d1kb0a2         536 SVA  538 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.47  E-value=3.4  Score=38.46  Aligned_cols=97  Identities=9%  Similarity=-0.090  Sum_probs=55.3

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEe------cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEE-EcCCC
Q 010037          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW-EVRRC  461 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iw-d~~~~  461 (519)
                      .++..+.++|. .++....++.+.++++..+......      .-...+.+++|++ .+..++++..++ ..+- ++...
T Consensus       126 ~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~~g~~-~q~k~~i~~~  202 (381)
T d1xipa_         126 KPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQSFAWRNGE-MEKQFEFSLP  202 (381)
T ss_dssp             SCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEEEEEETTE-EEEEEEECCC
T ss_pred             ccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEEEEEeCCCc-eeeccCCCCc
Confidence            44666777776 4555666888999999887644332      2446688888887 777777764332 2211 22211


Q ss_pred             cEE-eeccCCCceEEEEEeeCCCEEEEE
Q 010037          462 QVV-DYTDIREIVSAVCYCPDGKGGIVG  488 (519)
Q Consensus       462 ~~~-~~~~~~~~V~~v~~spdg~~l~sg  488 (519)
                      ..+ ........|.+|.|-.+..++++-
T Consensus       203 ~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         203 SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            111 011233457777777665555544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.94  E-value=6.5  Score=36.89  Aligned_cols=218  Identities=12%  Similarity=0.109  Sum_probs=97.3

Q ss_pred             CEEEEEEccCCCEEEEE-eCC----CcEEEEecccCeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeecc
Q 010037          286 SILTMKFSLDGQYLASG-GED----GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (519)
Q Consensus       286 ~I~~l~fspdg~~LaSg-s~D----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (519)
                      .+..+++|||+++||-+ +.+    ..|++.|+.+++.+... +.......+.|..+....++.................
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-cccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            44567889999988753 223    47999999999865422 1111223344544443333222111000000000000


Q ss_pred             CCCeeEEEeCCccccccccceeEeec--cCCCeeEEEEcCCC-eEE-EEe--CCCcEEEE--ECCCC--------eEEEE
Q 010037          361 SSDLTCVVLPPKVFRLLEKPLHEFQG--HSSEVLDLSWSKNG-FLL-SSS--ADKTVRLW--QVGID--------RCLRV  424 (519)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~-~L~-sgs--~Dg~V~lW--dl~~~--------~~~~~  424 (519)
                      .....+..+......  ......+..  ....+..+..++++ +++ ...  .+....+|  |+...        .....
T Consensus       205 ~~~~~v~~h~lgt~~--~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  282 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQ--SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (430)
T ss_dssp             CCCCEEEEEETTSCG--GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             CCcceEEEEECCCCc--cccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEe
Confidence            000111111111110  111222222  23346667778888 443 332  23344444  44321        11222


Q ss_pred             ecCCCcEEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCCcEE---eecc-CCCceEEEEEeeCCCEEEEEe-cCC--eE
Q 010037          425 FSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVV---DYTD-IREIVSAVCYCPDGKGGIVGT-MTG--NC  494 (519)
Q Consensus       425 ~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~iwd~~~~~~~---~~~~-~~~~V~~v~~spdg~~l~sgs-~dg--~v  494 (519)
                      +...........+. ++.+++....   ++.|...++......   .+.. +...+..-.+...+.+|+..- .++  .|
T Consensus       283 ~~~~~~~~~~~~~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l  361 (430)
T d1qfma1         283 IDNFEGEYDYVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL  361 (430)
T ss_dssp             ECSSSSCEEEEEEE-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred             ecccccceEEEecC-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEE
Confidence            32222222223333 3444443332   467777777654321   2233 344455545555666666554 554  48


Q ss_pred             EEEECCCCeeeec
Q 010037          495 RFYDIKGMQIFDL  507 (519)
Q Consensus       495 ~iwdl~~~~l~~~  507 (519)
                      +++++.++....+
T Consensus       362 ~v~~~~~~~~~~~  374 (430)
T d1qfma1         362 QLHDLATGALLKI  374 (430)
T ss_dssp             EEEETTTCCEEEE
T ss_pred             EEEECCCCcEEEe
Confidence            8999988876544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.80  E-value=6.5  Score=35.09  Aligned_cols=231  Identities=12%  Similarity=0.188  Sum_probs=128.8

Q ss_pred             eeecCCCCeEEeeecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEEEEeCCCcEEEEecccCe-ee
Q 010037          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-RL  319 (519)
Q Consensus       241 ~~~sp~g~~lasgs~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~-~~  319 (519)
                      .-.+|..+.||.-. ..++.|+|++...+.-+       +. ...+|.--+|-.+ +.|+-.+. ..|.-|++.... ..
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks-------~~-~~e~VvfWkWis~-~~L~lVT~-taVYHW~~~g~s~P~  136 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA-------HT-MTDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPV  136 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEE-------EE-CSSCCCEEEESSS-SEEEEECS-SEEEEEESSSSCCCE
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhce-------EE-cCCCcEEEEecCC-CEEEEEcC-CceEEEcccCCCCch
Confidence            35678888887755 56899999985443211       11 2346666677644 45666654 479999995432 22


Q ss_pred             ceeeccCC--CCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEeeccCCCeeEEEEc
Q 010037          320 DGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (519)
Q Consensus       320 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (519)
                      +.++.+..  ....+.+..+.......+.          .+.... .. +.-....+....+.-+.+.||.+.-..+...
T Consensus       137 k~fdR~~~L~~~QIInY~~d~~~kW~~l~----------GI~~~~-~~-i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~  204 (327)
T d1utca2         137 KMFDRHSSLAGCQIINYRTDAKQKWLLLT----------GISAQQ-NR-VVGAMQLYSVDRKVSQPIEGHAASFAQFKME  204 (327)
T ss_dssp             EEEECCGGGTTCEEEEEEECTTSCEEEEE----------EEEEET-TE-EEEEEEEEETTTTEEEEECCSEEEEEEECCT
T ss_pred             hhhhhcccccCceEEEEEECCCCCEEEEE----------eEecCC-Cc-eeEEEEEEEeccCcCccccceeeeeEEEEcC
Confidence            33332222  2233333333333322211          011101 11 1122222333334456677776655555443


Q ss_pred             CCC----eEEEEe---CCCcEEEEECCCCe---------EEEEe-c---CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 010037          398 KNG----FLLSSS---ADKTVRLWQVGIDR---------CLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (519)
Q Consensus       398 p~~----~L~sgs---~Dg~V~lWdl~~~~---------~~~~~-~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd  457 (519)
                      .+.    .++.+.   ..+.++|-++....         .+..+ .   ..+..-+++.++ ....+..-+.-|.|++||
T Consensus       205 g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyD  283 (327)
T d1utca2         205 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYD  283 (327)
T ss_dssp             TCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEE
T ss_pred             CCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEE
Confidence            221    333222   23678888876521         11111 1   356678899998 788888889999999999


Q ss_pred             cCCCcEEeec-cCCCceEEEEEeeCCCEEEEEecCCeEE
Q 010037          458 VRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCR  495 (519)
Q Consensus       458 ~~~~~~~~~~-~~~~~V~~v~~spdg~~l~sgs~dg~v~  495 (519)
                      +.++.++... -..+.|...+-..+...++....+|.|.
T Consensus       284 leTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         284 LETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            9999988433 3455666555555656677777777764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=88.93  E-value=1.3  Score=43.93  Aligned_cols=55  Identities=13%  Similarity=0.105  Sum_probs=37.2

Q ss_pred             CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       451 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |.|.-||+.+++++-......+...-...-.|.+|++|+.||.++.||.++|+.+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            3577778888877733222222222233447788889999999999999998753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.66  E-value=7  Score=33.97  Aligned_cols=216  Identities=10%  Similarity=-0.021  Sum_probs=112.7

Q ss_pred             ccceeecCCCCeEEee-ecCCeEEEeeCCccccccccccccceeecCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeccc
Q 010037          238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIE  315 (519)
Q Consensus       238 ~~~~~~sp~g~~lasg-s~dg~I~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~I~iWd~~~  315 (519)
                      +..++|++..+.|.-. ...+.|+..++.....+.       .+..-...+..|++..-+..|. +-...+.|.+.++..
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~-------v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE-------EEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            4457888887777654 455778887776433221       1122234678899987555554 555677899999865


Q ss_pred             CeeeceeeccCCCCceEEEeecCCCCeEEeeccCCceeeeeeeccCCCeeEEEeCCccccccccceeEe-eccCCCeeEE
Q 010037          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL  394 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l  394 (519)
                      ..+...+......+..+.+.+... .++.....            .....+...+.     .+.....+ ...-.....|
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g-~ly~t~~~------------~~~~~I~r~~~-----dG~~~~~i~~~~~~~P~gl  172 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRG-NLYWTDWN------------RDNPKIETSHM-----DGTNRRILAQDNLGLPNGL  172 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTT-EEEEEECC------------SSSCEEEEEET-----TSCCCEEEECTTCSCEEEE
T ss_pred             ceEEEEecccccCCcEEEEecccC-cEEEeecC------------CCCcEEEEecC-----CCCCceeeeeecccccceE
Confidence            543222222112222333222211 11111111            11111111111     01111111 1223456789


Q ss_pred             EEcCCC-eE-EEEeCCCcEEEEECCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEeec--cCC
Q 010037          395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIR  470 (519)
Q Consensus       395 ~~sp~~-~L-~sgs~Dg~V~lWdl~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~  470 (519)
                      ++.+.+ .| .+-...+.|...++........+........|++.  ++.++.+-...+.|...|..+++.....  ...
T Consensus       173 aiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~  250 (263)
T d1npea_         173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ  250 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred             EEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC
Confidence            998766 55 44456788999999876554444433345677775  3445555556788999999888766432  222


Q ss_pred             CceEEEEEee
Q 010037          471 EIVSAVCYCP  480 (519)
Q Consensus       471 ~~V~~v~~sp  480 (519)
                      .....++..+
T Consensus       251 ~~~~gi~v~~  260 (263)
T d1npea_         251 TRLYGITIAL  260 (263)
T ss_dssp             CCCCCEEEEC
T ss_pred             CCcceEEEeC
Confidence            3344555444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.61  E-value=9.7  Score=35.55  Aligned_cols=95  Identities=7%  Similarity=-0.049  Sum_probs=53.8

Q ss_pred             CcEEEEECCCCe---EEEEec-CCCcEEEEEEeeCCCCEEEEE-eCCC--eEEEEEcCCCcEEeec-cCCCceEEEEEee
Q 010037          409 KTVRLWQVGIDR---CLRVFS-HNNYVTSVAFNPVDDNYFISG-SIDG--KVRIWEVRRCQVVDYT-DIREIVSAVCYCP  480 (519)
Q Consensus       409 g~V~lWdl~~~~---~~~~~~-h~~~V~~v~fsp~d~~~l~sg-s~Dg--~V~iwd~~~~~~~~~~-~~~~~V~~v~~sp  480 (519)
                      +.|...++....   ....+. +...+..-.+.. .+++|+.. -.++  .|+++++.++...... ...+.|..+...+
T Consensus       311 ~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~-~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~  389 (430)
T d1qfma1         311 YRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK  389 (430)
T ss_dssp             CEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT
T ss_pred             ceeEEecCCCCccccceEEecccCcceeeeEEEE-ECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCC
Confidence            555556665432   122334 444455444444 45566554 4554  5899999988766432 2334455555555


Q ss_pred             CCCEEEEEecC----CeEEEEECCCCee
Q 010037          481 DGKGGIVGTMT----GNCRFYDIKGMQI  504 (519)
Q Consensus       481 dg~~l~sgs~d----g~v~iwdl~~~~l  504 (519)
                      +...+...-.+    .++.-||+.++++
T Consensus       390 ~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         390 KDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             TCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             CCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            55544443322    6789999988754

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.61  E-value=8.4  Score=36.47  Aligned_cols=35  Identities=9%  Similarity=-0.022  Sum_probs=27.8

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEecccCee
Q 010037          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (519)
Q Consensus       284 ~~~I~~l~fspdg~~LaSgs~Dg~I~iWd~~~~~~  318 (519)
                      -...++|+|.|||++|++--..|.|++++..++..
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence            45678999999999888765579999988766653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=8.3  Score=33.48  Aligned_cols=115  Identities=9%  Similarity=-0.008  Sum_probs=75.7

Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCcEE
Q 010037          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV  464 (519)
Q Consensus       389 ~~V~~l~~sp~~--~L~sgs~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~iwd~~~~~~~  464 (519)
                      ..+..|++.+.+  ...+-...+.|.+.++.......... .......|+++|..+.++.+.. ..+.|.-.++......
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            345567776644  44555677889999998776555444 4567899999994444444432 3456777777655444


Q ss_pred             eec-cCCCceEEEEEeeCCCEEEEE-ecCCeEEEEECCCCe
Q 010037          465 DYT-DIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKGMQ  503 (519)
Q Consensus       465 ~~~-~~~~~V~~v~~spdg~~l~sg-s~dg~v~iwdl~~~~  503 (519)
                      .+. ..-...+++++.+.++.|..+ ...+.|...++.+..
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            333 333567899999987766665 556788888887653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.00  E-value=8.9  Score=33.28  Aligned_cols=114  Identities=4%  Similarity=-0.072  Sum_probs=66.0

Q ss_pred             CCeeEEEEcCCC-eEEEEe--CCCcEEEEECCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 010037          389 SEVLDLSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (519)
Q Consensus       389 ~~V~~l~~sp~~-~L~sgs--~Dg~V~lWdl~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~  464 (519)
                      .....|+..|.. +|+-..  ..+.|.-.++.......... .-...+.+++.+..+.+..+-...+.|...++......
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~  199 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  199 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE
Confidence            345667777743 333322  33456556665554444443 33567899999833444445466789999998765432


Q ss_pred             e---eccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCe
Q 010037          465 D---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQ  503 (519)
Q Consensus       465 ~---~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~  503 (519)
                      .   .........++++. ++.+.++-..++.|...+..+++
T Consensus       200 ~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         200 TILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence            2   22222345667765 33444444467888888877764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.28  E-value=12  Score=34.09  Aligned_cols=111  Identities=14%  Similarity=0.249  Sum_probs=71.5

Q ss_pred             eeEEEE--cCC-C--eEEEEeCCCcEEEEECC---CC----eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 010037          391 VLDLSW--SKN-G--FLLSSSADKTVRLWQVG---ID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (519)
Q Consensus       391 V~~l~~--sp~-~--~L~sgs~Dg~V~lWdl~---~~----~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~  458 (519)
                      +..+|+  ++. +  +++....+|.+..|.+.   .+    +.++.|.....+-.+.+.+ ....|..+-.+.-|..++.
T Consensus       130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd-e~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD-EYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEEES
T ss_pred             ceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC-CCCcEEEecCccceEEEEe
Confidence            455555  554 4  56777788988888763   22    4566777788899999998 7778888888776666665


Q ss_pred             CC-----CcEEeec---cCCCceEEEEEee--CCC-EEEE-EecCCeEEEEECCCC
Q 010037          459 RR-----CQVVDYT---DIREIVSAVCYCP--DGK-GGIV-GTMTGNCRFYDIKGM  502 (519)
Q Consensus       459 ~~-----~~~~~~~---~~~~~V~~v~~sp--dg~-~l~s-gs~dg~v~iwdl~~~  502 (519)
                      .-     ...+...   .....+..|+.-.  ++. +|++ .-.+++..|||..+.
T Consensus       209 ~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         209 EPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             STTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             ccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            42     2333221   2345677777543  444 4444 335778999998763

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.88  E-value=3.6  Score=40.66  Aligned_cols=55  Identities=20%  Similarity=0.124  Sum_probs=39.7

Q ss_pred             CeEEEEEcCCCcEEeeccCCCceEEEEEeeCCCEEEEEecCCeEEEEECCCCeee
Q 010037          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKGMQIF  505 (519)
Q Consensus       451 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~sgs~dg~v~iwdl~~~~l~  505 (519)
                      |.|.-+|+.+++++-......++..-..+..|.++++|+.||.++.||.++|+++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            5688888888888743333333333334557778889999999999999999753

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.46  E-value=10  Score=34.91  Aligned_cols=96  Identities=11%  Similarity=0.025  Sum_probs=64.2

Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCcEEee--
Q 010037          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--  466 (519)
Q Consensus       390 ~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~iwd~~~~~~~~~--  466 (519)
                      .|..++|+.+ .|+.. .++.+..+++..-...... ....++..+.++|   ..++....++.+.++++.+++....  
T Consensus        88 ~v~~vafs~d-~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD-QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT-EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC-EEEEE-eCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence            5778888755 44443 3456788887664333332 2456688888877   4677777899999999988754321  


Q ss_pred             ----ccCCCceEEEEEeeCCCEEEEEec
Q 010037          467 ----TDIREIVSAVCYCPDGKGGIVGTM  490 (519)
Q Consensus       467 ----~~~~~~V~~v~~spdg~~l~sgs~  490 (519)
                          ..-...+.+++|++.|+.++++..
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCC
Confidence                122366888899888888887753

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=82.67  E-value=13  Score=31.36  Aligned_cols=118  Identities=11%  Similarity=0.213  Sum_probs=76.2

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEec----------CCCcEEEEEEeeCCCCEEEEEeC-CCeEEEEE
Q 010037          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----------HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWE  457 (519)
Q Consensus       389 ~~V~~l~~sp~~~L~sgs~Dg~V~lWdl~~~~~~~~~~----------h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~iwd  457 (519)
                      -.|.++++......++|+....+.+|-+..++..+...          ....|..+.+-..+..-|.++.. .|.++|++
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            45777777766688888888888999888886554332          23455555553323344555555 78888887


Q ss_pred             cCCCcEEe--------------------e--cc-------------------CCCceEEEEEeeCCCEEEEEecCCeEEE
Q 010037          458 VRRCQVVD--------------------Y--TD-------------------IREIVSAVCYCPDGKGGIVGTMTGNCRF  496 (519)
Q Consensus       458 ~~~~~~~~--------------------~--~~-------------------~~~~V~~v~~spdg~~l~sgs~dg~v~i  496 (519)
                      ...+.+-.                    |  .+                   ..-.|+-+-|.|++++++.+-.||.-++
T Consensus       184 pkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~l  263 (313)
T d2hu7a1         184 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAV  263 (313)
T ss_dssp             CSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred             CCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchhe
Confidence            66543110                    0  00                   1122566779999999999999999998


Q ss_pred             EECCCCeeeecc
Q 010037          497 YDIKGMQIFDLS  508 (519)
Q Consensus       497 wdl~~~~l~~~~  508 (519)
                      |.-  ++++...
T Consensus       264 F~n--Gk~in~p  273 (313)
T d2hu7a1         264 FID--GERVEAP  273 (313)
T ss_dssp             EET--TEEECCC
T ss_pred             eec--ceEecCC
Confidence            863  5555443