Citrus Sinensis ID: 010065
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | 2.2.26 [Sep-21-2011] | |||||||
| P52420 | 532 | Phosphoribosylamine--glyc | yes | no | 0.988 | 0.964 | 0.747 | 0.0 | |
| P52421 | 311 | Phosphoribosylamine--glyc | N/A | no | 0.560 | 0.935 | 0.869 | 1e-148 | |
| Q92RL0 | 423 | Phosphoribosylamine--glyc | yes | no | 0.807 | 0.990 | 0.575 | 1e-134 | |
| Q8UHN3 | 423 | Phosphoribosylamine--glyc | yes | no | 0.809 | 0.992 | 0.565 | 1e-133 | |
| Q8Z334 | 429 | Phosphoribosylamine--glyc | N/A | no | 0.820 | 0.993 | 0.555 | 1e-129 | |
| P26977 | 429 | Phosphoribosylamine--glyc | yes | no | 0.820 | 0.993 | 0.555 | 1e-129 | |
| Q986A5 | 425 | Phosphoribosylamine--glyc | yes | no | 0.811 | 0.990 | 0.548 | 1e-129 | |
| Q8G2B1 | 427 | Phosphoribosylamine--glyc | yes | no | 0.813 | 0.988 | 0.567 | 1e-128 | |
| Q8DD07 | 429 | Phosphoribosylamine--glyc | yes | no | 0.818 | 0.990 | 0.534 | 1e-128 | |
| Q8FB69 | 429 | Phosphoribosylamine--glyc | yes | no | 0.820 | 0.993 | 0.553 | 1e-128 |
| >sp|P52420|PUR2_ARATH Phosphoribosylamine--glycine ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR2 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/531 (74%), Positives = 453/531 (85%), Gaps = 18/531 (3%)
Query: 3 CTSYCL--SPCVKLCSSSS--TKCFQFQKPFASSNNLRFSVGPNFSISFNPQGSKSSFFS 58
C S C S + L S+++ TK F FASSN+L F FS + N S S F S
Sbjct: 5 CASNCYPSSSSINLFSNNNNPTKPFLLSLRFASSNSLPFVAPLKFSTT-NHVLSNSRFSS 63
Query: 59 T--------VKCLAQKSQPSVSVNAPTNAG--QRVVVLVIGGGGREHALCYALKRSHSCD 108
++C++++SQPS+S+ N G +RV VLVIGGGGREHALC+ALKRS SCD
Sbjct: 64 NRIQRRLFLLRCVSEESQPSLSIG---NGGSEERVNVLVIGGGGREHALCHALKRSPSCD 120
Query: 109 AVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLV 168
+V CAPGNAGIS+SGDATC+PDLD+ D AVISFC+KW+VGLVVVGPE PLV+GLAN LV
Sbjct: 121 SVLCAPGNAGISSSGDATCVPDLDISDSLAVISFCQKWNVGLVVVGPEVPLVAGLANDLV 180
Query: 169 KAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK 228
KAGI TFGPSS+AAALEGSKNFMKNLC KY IPTAKYKTF+D +AAK+YIQE+GAPIV+K
Sbjct: 181 KAGILTFGPSSQAAALEGSKNFMKNLCHKYNIPTAKYKTFSDASAAKEYIQEQGAPIVIK 240
Query: 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGEN 288
ADGLAAGKGV VAM LEEA+EAVDSML+K FGSAGC+V++EEFLEGEEASFFALVDGEN
Sbjct: 241 ADGLAAGKGVTVAMELEEAFEAVDSMLVKGVFGSAGCQVVVEEFLEGEEASFFALVDGEN 300
Query: 289 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCK 348
AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQ VMESII PTVKGM+ EGCK
Sbjct: 301 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQDFVMESIIHPTVKGMAEEGCK 360
Query: 349 FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTL 408
FVGVL+AGLMIEKKSGLPKLIE+NVRFGDPECQVLM+RLESDLA+VLLAAC+GEL+GV+L
Sbjct: 361 FVGVLFAGLMIEKKSGLPKLIEFNVRFGDPECQVLMMRLESDLAKVLLAACKGELSGVSL 420
Query: 409 NWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGG 468
+WS SAMVVVMAS GYPGSYEKGS I+NLEEAE+VAP VK+FHAGT LD++GN +ATGG
Sbjct: 421 DWSKDSAMVVVMASNGYPGSYEKGSIIKNLEEAERVAPGVKVFHAGTGLDSEGNVVATGG 480
Query: 469 RVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFATRE 519
RVLGVTAKGKD+EEA++RAY AV++INWPGGF+R DIGWRAL QKQ AT+E
Sbjct: 481 RVLGVTAKGKDLEEARERAYSAVQQINWPGGFFRHDIGWRALRQKQVATKE 531
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Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|P52421|PUR2_VIGUN Phosphoribosylamine--glycine ligase (Fragment) OS=Vigna unguiculata GN=PUR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/291 (86%), Positives = 273/291 (93%)
Query: 210 DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVII 269
DP KQYIQE+GAPIV+KADGLAAGKGV VAMTLEEAY+AVDSML++ FGSAGCRVI+
Sbjct: 1 DPRVRKQYIQEQGAPIVIKADGLAAGKGVTVAMTLEEAYKAVDSMLVQGDFGSAGCRVIV 60
Query: 270 EEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSV 329
EEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQS+
Sbjct: 61 EEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSI 120
Query: 330 VMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLES 389
VM+SII+PTVKGMSAEG KFVGVLYAGLMIEKKSG+PKLIEYNVRFGDPECQVLMVRLES
Sbjct: 121 VMDSIIIPTVKGMSAEGSKFVGVLYAGLMIEKKSGMPKLIEYNVRFGDPECQVLMVRLES 180
Query: 390 DLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVK 449
DL +VLLAACRGEL GV+L WSPGSAMVVVMASKGYPGSY+KG+ I+NLEEAE VAP +K
Sbjct: 181 DLVQVLLAACRGELNGVSLKWSPGSAMVVVMASKGYPGSYQKGTVIENLEEAEAVAPGIK 240
Query: 450 IFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGF 500
IFHAGTA D++G FIATGGRVLGVTAKG D+EEA DRAYLAVE +NWPGGF
Sbjct: 241 IFHAGTAFDSEGRFIATGGRVLGVTAKGNDLEEACDRAYLAVENVNWPGGF 291
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Vigna unguiculata (taxid: 3917) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q92RL0|PUR2_RHIME Phosphoribosylamine--glycine ligase OS=Rhizobium meliloti (strain 1021) GN=purD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 479 bits (1234), Expect = e-134, Method: Compositional matrix adjust.
Identities = 247/429 (57%), Positives = 307/429 (71%), Gaps = 10/429 (2%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VL+IG GGREHAL + + +S ++ APGN GI+ I DL + + V+ FCR
Sbjct: 3 VLLIGSGGREHALAWKIAQSPRLTKLYAAPGNPGIAEE---AAIVDLHTENHEDVVDFCR 59
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
++ VVVGPEAPLV+GL + L A IPTFGPS+ AA LEGSK F K+LC +YGIPT
Sbjct: 60 THAIDFVVVGPEAPLVAGLGDVLRAADIPTFGPSAAAAQLEGSKGFTKDLCARYGIPTGA 119
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+ FTD AK YI+EEGAPIV+KADGLAAGKGV VAM+L+EA+ AVD +AG
Sbjct: 120 YRRFTDAEPAKAYIREEGAPIVIKADGLAAGKGVTVAMSLDEAFAAVDECFAGAFG-AAG 178
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
V++E +L+GEEASFF L DG++ +PL SAQDHKRVGDGDTGPNTGGMGAYSPAPV+T
Sbjct: 179 AEVVVEAYLDGEEASFFCLCDGKSVLPLASAQDHKRVGDGDTGPNTGGMGAYSPAPVMTA 238
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E+ M+ II PTV+GM+ G F GV +AGLMI +K P+LIEYNVRFGDPECQVLM
Sbjct: 239 EMVERTMKEIIEPTVRGMAESGYPFTGVFFAGLMITEKG--PELIEYNVRFGDPECQVLM 296
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
+RLESDL +L AA G L G+ W +A+ VVMAS+GYPG+YEK + I L +A
Sbjct: 297 MRLESDLLPLLYAAATGTLEGMKAEWRDEAALTVVMASRGYPGAYEKDTPIAALPDA--- 353
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
+ + K+FHAGTA+ G +A GGRVL VTA GK V EA+D AY AV +++W GFYR D
Sbjct: 354 SAATKVFHAGTAMKG-GGLVAAGGRVLNVTATGKTVGEAKDAAYAAVRDVSWENGFYRND 412
Query: 505 IGWRALPQK 513
IGWRA+ ++
Sbjct: 413 IGWRAVARE 421
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Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8UHN3|PUR2_AGRT5 Phosphoribosylamine--glycine ligase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=purD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 475 bits (1223), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/430 (56%), Positives = 306/430 (71%), Gaps = 10/430 (2%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VL+IG GGREHAL + + +S DA++ APGN GI+ D + LDV D AVI+F +
Sbjct: 3 VLLIGSGGREHALAWKIAQSPLIDALYAAPGNPGIA---DHATLVSLDVEDHAAVIAFAK 59
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ ++ VV+GPEAPLV+GLA+ L AGI TFGPS AA LEGSK F K+LC +Y IPT
Sbjct: 60 EKAIDFVVIGPEAPLVAGLADDLRAAGIATFGPSKAAAQLEGSKGFTKDLCARYDIPTGA 119
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+ F AK Y++ +GAPIV+KADGLAAGKGV VAMT EA A+D AFG+AG
Sbjct: 120 YERFKAAEPAKDYVRAQGAPIVIKADGLAAGKGVTVAMTEAEALAAIDD-CFDGAFGTAG 178
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
V++E FL+GEEASFF L DG+ A+ L +AQDHKRVGDGDTGPNTGGMGAYSPAPV+T
Sbjct: 179 TEVVVEAFLDGEEASFFCLSDGKTALALATAQDHKRVGDGDTGPNTGGMGAYSPAPVMTP 238
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
+ M+ II PT+ GM+ +G F GV +AGLMI K P+LIEYNVRFGDPECQVLM
Sbjct: 239 AMVERTMKEIIEPTISGMAKDGNPFSGVFFAGLMITAKG--PELIEYNVRFGDPECQVLM 296
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
+RL+SDL +L A G L V W +A+ VV+ASKGYPG+Y+K + I ++ EA +
Sbjct: 297 MRLKSDLLPILYATATGTLDKVQAEWRDDAALTVVLASKGYPGAYDKNTPIAHIPEASEE 356
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
A K+FHAGTAL DG +ATGGRVL VTA G++V EAQ RAY +++ W GF RRD
Sbjct: 357 A---KVFHAGTALK-DGKLVATGGRVLNVTAFGRNVTEAQARAYALADKVEWENGFCRRD 412
Query: 505 IGWRALPQKQ 514
IGW+A+ +++
Sbjct: 413 IGWQAIAREK 422
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Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8Z334|PUR2_SALTI Phosphoribosylamine--glycine ligase OS=Salmonella typhi GN=purD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/430 (55%), Positives = 302/430 (70%), Gaps = 4/430 (0%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLVIG GGREHAL + +S D VF APGNAG + + + V D A++SF +
Sbjct: 3 VLVIGNGGREHALAWKAAQSPLVDTVFVAPGNAGTALEPALQNVA-IGVTDIPALLSFAQ 61
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ L +VGPEAPLV G+ + AG+ FGP+ AA LEGSK F K+ ++ IPTA+
Sbjct: 62 NEKIDLTIVGPEAPLVIGVVDAFRAAGLKIFGPTEGAAQLEGSKAFTKDFLARHQIPTAE 121
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+ FT+ A Y++E+GAPIV+KADGLAAGKGVIVAMTLEEA AV ML NAFG AG
Sbjct: 122 YQNFTEIEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAG 181
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
R++IEEFL+GEEASF +VDGE+ +P+ ++QDHKRVG+GDTGPNTGGMGAYSPAPV+T
Sbjct: 182 HRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGNGDTGPNTGGMGAYSPAPVVTD 241
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E+ ME II PTVKGM+AEG + G LYAGLMI+K+ G PK+IE+N RFGDPE Q +M
Sbjct: 242 EVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQ-GNPKVIEFNCRFGDPETQPIM 300
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
+R++SDL ++ LAAC G+L T W +++ VV+A+ GYPGSY G EI L E+V
Sbjct: 301 LRMKSDLVDLCLAACDGKLDEKTSEWDERASLGVVIAAGGYPGSYSTGDEIHGL-PLEEV 359
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
A K+FHAGT L D + +GGRVL TA G V EAQ RAY + +I W G F R D
Sbjct: 360 ADG-KVFHAGTKLADDDRVLTSGGRVLCATALGHTVAEAQKRAYALMTDIRWDGSFSRND 418
Query: 505 IGWRALPQKQ 514
IGWRA+ ++Q
Sbjct: 419 IGWRAIEREQ 428
|
Salmonella typhi (taxid: 90370) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P26977|PUR2_SALTY Phosphoribosylamine--glycine ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=purD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/430 (55%), Positives = 302/430 (70%), Gaps = 4/430 (0%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLVIG GGREHAL + +S D VF APGNAG + + + V D A++SF +
Sbjct: 3 VLVIGNGGREHALAWKAAQSPLVDTVFVAPGNAGTALEPALQNVA-IGVTDIPALLSFAQ 61
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ L +VGPEAPLV G+ + AG+ FGP+ AA LEGSK F K+ ++ IPTA+
Sbjct: 62 HEKIDLTIVGPEAPLVIGVVDAFRAAGLKIFGPTEGAAQLEGSKAFTKDFLARHQIPTAE 121
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+ FT+ A Y++E+GAPIV+KADGLAAGKGVIVAMTLEEA AV ML NAFG AG
Sbjct: 122 YQNFTEIEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAG 181
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
R++IEEFL+GEEASF +VDGE+ +P+ ++QDHKRVG+GDTGPNTGGMGAYSPAPV+T
Sbjct: 182 HRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGNGDTGPNTGGMGAYSPAPVVTD 241
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E+ ME II PTVKGM+AEG + G LYAGLMI+K+ G PK+IE+N RFGDPE Q +M
Sbjct: 242 EVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQ-GNPKVIEFNCRFGDPETQPIM 300
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
+R++SDL ++ LAAC G+L T W +++ VV+A+ GYPGSY G EI L E+V
Sbjct: 301 LRMKSDLVDLCLAACDGKLDEKTSEWDERASLGVVIAAGGYPGSYSTGDEIHGL-PLEEV 359
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
A K+FHAGT L D + +GGRVL TA G V EAQ RAY + +I W G F R D
Sbjct: 360 ADG-KVFHAGTKLADDDRVLTSGGRVLCATALGHTVAEAQKRAYALMTDIRWDGSFSRND 418
Query: 505 IGWRALPQKQ 514
IGWRA+ ++Q
Sbjct: 419 IGWRAIEREQ 428
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Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q986A5|PUR2_RHILO Phosphoribosylamine--glycine ligase OS=Rhizobium loti (strain MAFF303099) GN=purD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/430 (54%), Positives = 302/430 (70%), Gaps = 9/430 (2%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VL++G GGREHAL + + S ++ APGN GI + + LD+ D AV +FC+
Sbjct: 3 VLLLGSGGREHALAWKIAASPLLTKLYAAPGNPGIGAEAE---LVKLDITDHAAVTAFCQ 59
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ + LVVVGPE PLV+G+A+ L I FGPS AA LEGSK F K+LC +Y IPTA
Sbjct: 60 EKKIDLVVVGPEGPLVAGIADDLRAENIRVFGPSKAAARLEGSKGFTKDLCARYNIPTAA 119
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y F D +AK Y+ + GAPIV+KADGLAAGKGV VAMT +EA A+D+ + +FG+AG
Sbjct: 120 YGRFNDLASAKAYVDQTGAPIVIKADGLAAGKGVTVAMTSDEARAALDA-CFEGSFGAAG 178
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
V++EEF+ GEEASFF L DG A+P +AQDHKRVGDGD GPNTGGMGAYSPAPV+T
Sbjct: 179 AEVVVEEFMTGEEASFFCLCDGTTALPFGTAQDHKRVGDGDVGPNTGGMGAYSPAPVMTP 238
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E+ M II PT++GM+ G F G+L+AGLMI K PKLIEYN RFGDPECQVLM
Sbjct: 239 EMIERTMREIIEPTMRGMAELGAPFAGILFAGLMITDKG--PKLIEYNTRFGDPECQVLM 296
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
+RL+ DL +L AA G+L ++ W +A+ VVMA++GYPG+ EKGS I+ +E+A
Sbjct: 297 MRLKDDLLVLLNAAVDGQLAHTSIRWRDEAALTVVMAARGYPGTPEKGSVIRGVEQA--A 354
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
V+IFHAGTA++ G +A GGRVL VTA G V EAQ RAY A++ I+WP GF RRD
Sbjct: 355 GEGVQIFHAGTAING-GALVANGGRVLNVTASGATVGEAQKRAYAALDRIDWPDGFCRRD 413
Query: 505 IGWRALPQKQ 514
IGW+A+ +++
Sbjct: 414 IGWQAVARER 423
|
Rhizobium loti (strain MAFF303099) (taxid: 266835) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8G2B1|PUR2_BRUSU Phosphoribosylamine--glycine ligase OS=Brucella suis biovar 1 (strain 1330) GN=purD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1182), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/430 (56%), Positives = 314/430 (73%), Gaps = 8/430 (1%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VL+IG GGREHAL + L S + ++CAPGN GI+ + + D+ V D A+I+F +
Sbjct: 3 VLLIGSGGREHALAWKLAASPLLEKLYCAPGNPGIAAVAE---LADIGVDDHAALIAFAK 59
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ + LVVVGPEAPLV+GLA+++ GI FGPS AA LEGSK F K+LC ++ IPT
Sbjct: 60 EKHIDLVVVGPEAPLVTGLADEMRAEGIRVFGPSRAAAQLEGSKGFTKDLCARFNIPTGA 119
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y F + AK YI+++GAPIVVKADGLAAGKGV+VAMTL+EA +AVDS + AFG+AG
Sbjct: 120 YGRFNNAPKAKAYIRQQGAPIVVKADGLAAGKGVVVAMTLQEALDAVDS-CFEGAFGAAG 178
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
V++EEFL+GEEASFF + DG+ A+PL SAQDHKRVGDGDTGPNTGGMGAY+PAPV+T
Sbjct: 179 AEVVVEEFLDGEEASFFCICDGKTALPLGSAQDHKRVGDGDTGPNTGGMGAYAPAPVMTP 238
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E+ + M +I PT++GM+ G F G+L+AGLMI PKLIEYN RFGDPECQVLM
Sbjct: 239 EMVARTMRELIEPTMRGMAEIGAPFSGILFAGLMITSDG--PKLIEYNTRFGDPECQVLM 296
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
+RL SDL ++ AA G L V+L W A+ VVMA++GYP + +KGS I++LE+ E +
Sbjct: 297 MRLNSDLLALINAAVDGRLDEVSLEWKDEPALTVVMAAEGYPANVKKGSVIRDLEKLESI 356
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
VK+FHAGTAL DG +A GGRVL +TA V +AQ RAY A++ I+WP GFYR D
Sbjct: 357 -DGVKLFHAGTALK-DGAIVAGGGRVLNITATAATVAQAQARAYEALKLIDWPEGFYRSD 414
Query: 505 IGWRALPQKQ 514
IGWRA+ +++
Sbjct: 415 IGWRAVEREK 424
|
Brucella suis biovar 1 (strain 1330) (taxid: 204722) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8DD07|PUR2_VIBVU Phosphoribosylamine--glycine ligase OS=Vibrio vulnificus (strain CMCP6) GN=purD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/430 (53%), Positives = 303/430 (70%), Gaps = 5/430 (1%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VL+IG GGREHAL + ++ + + +F APGNAG + + ++ V D +++F +
Sbjct: 3 VLIIGSGGREHALGWKAAQNPNVETIFVAPGNAGTALEPKLENV-NIAVEDIAGLVAFAK 61
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ ++ L +VGPE PLV G+ + +AG+P FGP+ AA LEGSK F K+ ++ IPTA
Sbjct: 62 EKAIELTIVGPEVPLVLGVVDAFYEAGLPIFGPTQAAAQLEGSKAFTKDFLARHQIPTAA 121
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y FTD A Y++E+GAPIVVKADGLAAGKGVIVAMTLEEA EA+ ML NAFG AG
Sbjct: 122 YANFTDIEPALAYVREQGAPIVVKADGLAAGKGVIVAMTLEEAEEAIKDMLAGNAFGEAG 181
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
RV+IEEFL+GEEASF +VDGEN +P+ ++QDHKRVGD DTGPNTGGMGAYSPAPV+T
Sbjct: 182 SRVVIEEFLDGEEASFIVMVDGENVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTP 241
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E+ + VM+ +I PTV+GM+AEG + G LYAGLMI+ K G PK+IEYN RFGDPE Q +M
Sbjct: 242 EIHNRVMQEVIFPTVRGMAAEGNPYTGFLYAGLMID-KDGTPKVIEYNCRFGDPETQPIM 300
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
+R+ESDL E+ LAA +L V W P +++ +V+A+ GYP +Y KG I L + E
Sbjct: 301 MRMESDLVELCLAAIDKKLDQVESKWDPRASIGIVLAAGGYPAAYNKGDVISGLPQVE-- 358
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
K+FHAGT + +G+ + GGRVL TA G V EAQ RAY ++I W G F+R D
Sbjct: 359 IEGEKVFHAGTE-NKEGDIVTNGGRVLCATALGNSVSEAQQRAYELAKQIRWEGMFHRND 417
Query: 505 IGWRALPQKQ 514
IG+RA+ ++Q
Sbjct: 418 IGYRAIAREQ 427
|
Vibrio vulnificus (taxid: 672) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8FB69|PUR2_ECOL6 Phosphoribosylamine--glycine ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=purD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 238/430 (55%), Positives = 301/430 (70%), Gaps = 4/430 (0%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLVIG GGREHAL + +S + VF APGNAG + + + V D A++ F +
Sbjct: 3 VLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVA-IGVTDIPALLDFAQ 61
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
V L +VGPEAPLV G+ + AG+ FGP++ AA LEGSK F K+ ++ IPTA+
Sbjct: 62 NEKVDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHNIPTAE 121
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+ FT+ A Y++E+GAPIV+KADGLAAGKGVIVAMTLEEA AV ML NAFG AG
Sbjct: 122 YQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVRDMLAGNAFGDAG 181
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
R++IEEFL+GEEASF +VDGE+ +P+ ++QDHKRVGD DTGPNTGGMGAYSPAPV+T
Sbjct: 182 HRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTD 241
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E+ ME II PTVKGM+AEG + G LYAGLMI+K+ G PK+IE+N RFGDPE Q +M
Sbjct: 242 EVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQ-GNPKVIEFNCRFGDPETQPIM 300
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
+R++SDL E+ LAAC G+L T W +++ VVMA+ GYPG Y G I L E+V
Sbjct: 301 LRMKSDLVELCLAACEGKLDEKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGL-PLEEV 359
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
A K+FHAGT L D + +GGRVL VTA G V EAQ RAY + +I+W F R+D
Sbjct: 360 ADG-KVFHAGTKLADDEQVVTSGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKD 418
Query: 505 IGWRALPQKQ 514
IGWRA+ ++Q
Sbjct: 419 IGWRAIEREQ 428
|
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | ||||||
| 224129712 | 528 | predicted protein [Populus trichocarpa] | 0.982 | 0.965 | 0.780 | 0.0 | |
| 255570982 | 534 | phosphoribosylamine-glycine ligase, puta | 0.903 | 0.878 | 0.864 | 0.0 | |
| 296086828 | 527 | unnamed protein product [Vitis vinifera] | 0.947 | 0.933 | 0.800 | 0.0 | |
| 359494908 | 547 | PREDICTED: phosphoribosylamine--glycine | 0.843 | 0.800 | 0.874 | 0.0 | |
| 357484355 | 532 | Phosphoribosylamine-glycine ligase [Medi | 0.965 | 0.941 | 0.738 | 0.0 | |
| 15218286 | 532 | phosphoribosylamine--glycine ligase [Ara | 0.988 | 0.964 | 0.747 | 0.0 | |
| 449431878 | 534 | PREDICTED: phosphoribosylamine--glycine | 0.988 | 0.960 | 0.733 | 0.0 | |
| 449520996 | 534 | PREDICTED: LOW QUALITY PROTEIN: phosphor | 0.988 | 0.960 | 0.731 | 0.0 | |
| 37992755 | 515 | glycinamide ribonucleotide synthetase [N | 0.971 | 0.978 | 0.768 | 0.0 | |
| 297849296 | 530 | phosphoribosylamine--glycine ligase [Ara | 0.969 | 0.949 | 0.747 | 0.0 |
| >gi|224129712|ref|XP_002328784.1| predicted protein [Populus trichocarpa] gi|222839082|gb|EEE77433.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/537 (78%), Positives = 464/537 (86%), Gaps = 27/537 (5%)
Query: 1 MACTSYCLSPCVKLCSSSSTKCFQFQKP----FASSNNLRFSVGPNFSISFNPQGSKSSF 56
M+C + L P +KL +S CFQ +SS + VGP G+KSS+
Sbjct: 1 MSCATLNLPPSLKLLNS----CFQPSNKKSCFLSSSFSSVSFVGP-----LTSYGNKSSW 51
Query: 57 FS------------TVKCLAQKSQPSVSVNAPTNAG--QRVVVLVIGGGGREHALCYALK 102
S KC+AQKS+ SVSV A +N +R+VVLVIGGGGREHALCYAL+
Sbjct: 52 DSCHVIKGLRSFPIVFKCVAQKSELSVSVGAGSNIASEKRLVVLVIGGGGREHALCYALQ 111
Query: 103 RSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162
RS SCDAVFCAPGNAGISNSG+ATCIP+LD+ D AVISFCRKW VGLVVVGPEAPLVSG
Sbjct: 112 RSPSCDAVFCAPGNAGISNSGNATCIPELDISDSSAVISFCRKWGVGLVVVGPEAPLVSG 171
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG 222
LAN LVKAGIPTFGPS+EAAALEGSKNFMKNLCDKY IPTAKY+TFTDP++AKQYI+++G
Sbjct: 172 LANDLVKAGIPTFGPSAEAAALEGSKNFMKNLCDKYKIPTAKYQTFTDPSSAKQYIEDQG 231
Query: 223 APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFA 282
APIV+KADGLAAGKGVIVAMTLEEAYEAVDSML+K+ FGSAGC V++EEFLEGEEASFFA
Sbjct: 232 APIVIKADGLAAGKGVIVAMTLEEAYEAVDSMLVKSVFGSAGCCVVVEEFLEGEEASFFA 291
Query: 283 LVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGM 342
LVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVM++II PTVKGM
Sbjct: 292 LVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMQTIIHPTVKGM 351
Query: 343 SAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402
+AEGCKFVGVLYAGLMIEKK+GLPKLIEYNVRFGDPECQVLMVRLESDLA+VLLAA RGE
Sbjct: 352 AAEGCKFVGVLYAGLMIEKKTGLPKLIEYNVRFGDPECQVLMVRLESDLAQVLLAASRGE 411
Query: 403 LTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGN 462
L+GV+L WSPGSAMVVVMASKGYPGSYEKG+ IQNLEEAE VAP+VKIFHAGTAL++DGN
Sbjct: 412 LSGVSLKWSPGSAMVVVMASKGYPGSYEKGTVIQNLEEAENVAPTVKIFHAGTALNSDGN 471
Query: 463 FIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFATRE 519
FIATGGRVLGVTA G+D+EEA+DRAY AVEEINWPGGFYRRDIGWRALPQKQ A ++
Sbjct: 472 FIATGGRVLGVTATGRDLEEARDRAYQAVEEINWPGGFYRRDIGWRALPQKQLAPKK 528
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570982|ref|XP_002526442.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis] gi|223534222|gb|EEF35937.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/471 (86%), Positives = 440/471 (93%), Gaps = 2/471 (0%)
Query: 51 GSKSSFFSTVKCLAQKSQPSVSVNAPTNAG--QRVVVLVIGGGGREHALCYALKRSHSCD 108
GS+SSF S KC+A+KSQP VS++A N G +RVVVLVIGGGGREHALCYAL+RS SCD
Sbjct: 64 GSRSSFSSVFKCIARKSQPEVSIDAHNNGGYEERVVVLVIGGGGREHALCYALQRSPSCD 123
Query: 109 AVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLV 168
AVFCAPGNAGI+NSG+ATCIPDLD+ D AVISFC KW VGLVVVGPEAPLV+GLAN LV
Sbjct: 124 AVFCAPGNAGIANSGNATCIPDLDISDSSAVISFCHKWGVGLVVVGPEAPLVAGLANDLV 183
Query: 169 KAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK 228
K GIPTFGPS+EAAALEGSKNFMK+LCDKY IPTAKYKTFTDP AAK+YIQ EGAPIV+K
Sbjct: 184 KVGIPTFGPSAEAAALEGSKNFMKSLCDKYKIPTAKYKTFTDPFAAKEYIQAEGAPIVIK 243
Query: 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGEN 288
ADGLAAGKGVIVAMTLEEA EAVDSML+K AFGSAGCRVI+EE+LEGEEASFFALVDGE
Sbjct: 244 ADGLAAGKGVIVAMTLEEANEAVDSMLVKGAFGSAGCRVIVEEYLEGEEASFFALVDGET 303
Query: 289 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCK 348
AIPLESAQDHKRVGDGDTG NTGGMGAYSPAPVLT+ELQS+VME+II+PTVKGM+AEGCK
Sbjct: 304 AIPLESAQDHKRVGDGDTGSNTGGMGAYSPAPVLTRELQSIVMETIIIPTVKGMAAEGCK 363
Query: 349 FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTL 408
FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA+VLLAACRGEL+GV+L
Sbjct: 364 FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAQVLLAACRGELSGVSL 423
Query: 409 NWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGG 468
NWSPGSAMVVVMASKGYPGSYEKG+ I NLEEAE VAP+V+IFHAGTALDADGNFIATGG
Sbjct: 424 NWSPGSAMVVVMASKGYPGSYEKGTVIGNLEEAENVAPTVQIFHAGTALDADGNFIATGG 483
Query: 469 RVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFATRE 519
RVLGVTAKG+D++EA+DRAY AVEEINWPGGFYRRDIGWRA PQKQFAT
Sbjct: 484 RVLGVTAKGRDLQEAKDRAYQAVEEINWPGGFYRRDIGWRAFPQKQFATER 534
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086828|emb|CBI32977.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/502 (80%), Positives = 442/502 (88%), Gaps = 10/502 (1%)
Query: 27 KPFASSN------NLRFSVGPNFSISFNPQGSKSSFFS-TVKCLAQKSQ-PSVSVNAPTN 78
KPF SN + F G + S P + FS + L+ Q SVSV A +
Sbjct: 25 KPFLPSNCSIFGTSSSFIAGASISTKNRPIPWELRHFSGSAASLSTPFQFHSVSVKAEQS 84
Query: 79 --AGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDG 136
A RVVVLVIG GGREHALCYALKRS SCDAVFCAPGNAGISNSGDATCI DLD+ D
Sbjct: 85 DIASDRVVVLVIGSGGREHALCYALKRSPSCDAVFCAPGNAGISNSGDATCISDLDISDS 144
Query: 137 DAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCD 196
AVISFC KW VGLVVVGPEAPLV+GL+N LVKAGIP+FGPSSEAAALEGSKNFMKNLCD
Sbjct: 145 SAVISFCHKWGVGLVVVGPEAPLVAGLSNDLVKAGIPSFGPSSEAAALEGSKNFMKNLCD 204
Query: 197 KYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLL 256
KYGIPTAKY+TFTDP AAKQYIQE+GAPIV+KADGLAAGKGVIVAMTL+EAYEAVD ML+
Sbjct: 205 KYGIPTAKYQTFTDPAAAKQYIQEQGAPIVIKADGLAAGKGVIVAMTLDEAYEAVDLMLV 264
Query: 257 KNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAY 316
K AFGSAG +VI+EEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAY
Sbjct: 265 KGAFGSAGSQVIVEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAY 324
Query: 317 SPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFG 376
SPAP++T+ELQS+VM+SII+PTVKGM+AEGC+FVGVLYAGLMIEKKSGLPKLIEYNVRFG
Sbjct: 325 SPAPIITEELQSLVMKSIIIPTVKGMAAEGCRFVGVLYAGLMIEKKSGLPKLIEYNVRFG 384
Query: 377 DPECQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQ 436
DPECQVLM+RLESDLA+VLLAAC+GEL+GV+LNWSPGSAMVVVMASKGYPGSYEKG+ I
Sbjct: 385 DPECQVLMIRLESDLAQVLLAACKGELSGVSLNWSPGSAMVVVMASKGYPGSYEKGTVIS 444
Query: 437 NLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINW 496
NL+EAE VAPSVK+FHAGT LD+DGNFIA GGRVLGVTAKGK++EEA++RAY AVEEINW
Sbjct: 445 NLDEAELVAPSVKVFHAGTNLDSDGNFIAVGGRVLGVTAKGKNLEEARERAYRAVEEINW 504
Query: 497 PGGFYRRDIGWRALPQKQFATR 518
PGGFYRRDIGWRALP+ QFAT+
Sbjct: 505 PGGFYRRDIGWRALPRGQFATK 526
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494908|ref|XP_002269017.2| PREDICTED: phosphoribosylamine--glycine ligase, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/438 (87%), Positives = 417/438 (95%)
Query: 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVI 140
RVVVLVIG GGREHALCYALKRS SCDAVFCAPGNAGISNSGDATCI DLD+ D AVI
Sbjct: 109 DRVVVLVIGSGGREHALCYALKRSPSCDAVFCAPGNAGISNSGDATCISDLDISDSSAVI 168
Query: 141 SFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGI 200
SFC KW VGLVVVGPEAPLV+GL+N LVKAGIP+FGPSSEAAALEGSKNFMKNLCDKYGI
Sbjct: 169 SFCHKWGVGLVVVGPEAPLVAGLSNDLVKAGIPSFGPSSEAAALEGSKNFMKNLCDKYGI 228
Query: 201 PTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAF 260
PTAKY+TFTDP AAKQYIQE+GAPIV+KADGLAAGKGVIVAMTL+EAYEAVD ML+K AF
Sbjct: 229 PTAKYQTFTDPAAAKQYIQEQGAPIVIKADGLAAGKGVIVAMTLDEAYEAVDLMLVKGAF 288
Query: 261 GSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAP 320
GSAG +VI+EEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAP
Sbjct: 289 GSAGSQVIVEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAP 348
Query: 321 VLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPEC 380
++T+ELQS+VM+SII+PTVKGM+AEGC+FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPEC
Sbjct: 349 IITEELQSLVMKSIIIPTVKGMAAEGCRFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPEC 408
Query: 381 QVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEE 440
QVLM+RLESDLA+VLLAAC+GEL+GV+LNWSPGSAMVVVMASKGYPGSYEKG+ I NL+E
Sbjct: 409 QVLMIRLESDLAQVLLAACKGELSGVSLNWSPGSAMVVVMASKGYPGSYEKGTVISNLDE 468
Query: 441 AEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGF 500
AE VAPSVK+FHAGT LD+DGNFIA GGRVLGVTAKGK++EEA++RAY AVEEINWPGGF
Sbjct: 469 AELVAPSVKVFHAGTNLDSDGNFIAVGGRVLGVTAKGKNLEEARERAYRAVEEINWPGGF 528
Query: 501 YRRDIGWRALPQKQFATR 518
YRRDIGWRALP+ QFAT+
Sbjct: 529 YRRDIGWRALPRGQFATK 546
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357484355|ref|XP_003612465.1| Phosphoribosylamine-glycine ligase [Medicago truncatula] gi|355513800|gb|AES95423.1| Phosphoribosylamine-glycine ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/536 (73%), Positives = 443/536 (82%), Gaps = 35/536 (6%)
Query: 4 TSYCLSPCVKLCSSSSTKCFQFQKPFASSNNLRFS-----VGPNFSISFNPQGSKSSFFS 58
TS+ L PC+ +S+ PF N+ F + NF+++F S S
Sbjct: 10 TSFNLHPCINHEASN---------PFGFRNHCIFHNSSTHLLKNFNLTFTHHNS-----S 55
Query: 59 TVKCLAQKSQP--SVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN 116
KC+AQ S S V N+ +RV VLVIGGGGREHALCYAL+RS SCD VFCAPGN
Sbjct: 56 VFKCVAQSSDSPASAGVQTNNNSKERVAVLVIGGGGREHALCYALQRSPSCDTVFCAPGN 115
Query: 117 AGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFG 176
AGI++SG+ATCI DLDV DG AV SFC+KW VGLVVVGPEAPLV+GL+N LVKAGIPTFG
Sbjct: 116 AGIASSGNATCISDLDVYDGAAVESFCQKWGVGLVVVGPEAPLVAGLSNYLVKAGIPTFG 175
Query: 177 PSSEAAALEGSKNFMKNLCDKYGIPTAK--------------YKTFTDPNAAKQYIQEEG 222
PS+EAAALEGSKNFMK+LCDKY IPTAK YKTFTDP+AA+QYIQEEG
Sbjct: 176 PSAEAAALEGSKNFMKHLCDKYDIPTAKVFAVCLLMMDLLVQYKTFTDPSAARQYIQEEG 235
Query: 223 APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFA 282
APIV+KADGLAAGKGV VAMTLEEAYEAVDSML+K FGSAGC +I+EEFLEGEE SFFA
Sbjct: 236 APIVIKADGLAAGKGVTVAMTLEEAYEAVDSMLVKGDFGSAGCCIIVEEFLEGEEVSFFA 295
Query: 283 LVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGM 342
LVDGENAIPL SAQDHKRVGDGDTGPNTGGMGAYSPAP+LTKELQS VM+SII+PT+KGM
Sbjct: 296 LVDGENAIPLGSAQDHKRVGDGDTGPNTGGMGAYSPAPILTKELQSTVMDSIIMPTIKGM 355
Query: 343 SAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402
SAEGCKFVGVL+AGLMIEKKSG+PKLIEYNVRFGDPECQVLMVRLESDL +VLLAACRGE
Sbjct: 356 SAEGCKFVGVLFAGLMIEKKSGMPKLIEYNVRFGDPECQVLMVRLESDLVQVLLAACRGE 415
Query: 403 LTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGN 462
L+GV+L+WSP SAMVVVMASKGYPGSYEKG+ I+NLE+AE VAP +KIFHAGTA D++G
Sbjct: 416 LSGVSLDWSPDSAMVVVMASKGYPGSYEKGTIIENLEKAELVAPDIKIFHAGTAFDSEGR 475
Query: 463 FIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFATR 518
FIATGGRVLGVTAKG D+EEA DRAY AVE +NWPGGFYRRDIGWRALPQKQ A++
Sbjct: 476 FIATGGRVLGVTAKGNDLEEACDRAYQAVENVNWPGGFYRRDIGWRALPQKQHASK 531
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218286|ref|NP_172454.1| phosphoribosylamine--glycine ligase [Arabidopsis thaliana] gi|12644306|sp|P52420.2|PUR2_ARATH RecName: Full=Phosphoribosylamine--glycine ligase, chloroplastic; AltName: Full=Glycinamide ribonucleotide synthetase; Short=GARS; AltName: Full=Phosphoribosylglycinamide synthetase; Flags: Precursor gi|2160174|gb|AAB60737.1| Identical to A. thaliana PUR2 (gb|X74766). ESTs gb|ATTS3927,gb|N96446 come from this gene [Arabidopsis thaliana] gi|15292773|gb|AAK92755.1| putative phosphoribosylglycinamide synthetase [Arabidopsis thaliana] gi|20259251|gb|AAM14361.1| putative phosphoribosylglycinamide synthetase [Arabidopsis thaliana] gi|332190379|gb|AEE28500.1| phosphoribosylamine--glycine ligase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/531 (74%), Positives = 453/531 (85%), Gaps = 18/531 (3%)
Query: 3 CTSYCL--SPCVKLCSSSS--TKCFQFQKPFASSNNLRFSVGPNFSISFNPQGSKSSFFS 58
C S C S + L S+++ TK F FASSN+L F FS + N S S F S
Sbjct: 5 CASNCYPSSSSINLFSNNNNPTKPFLLSLRFASSNSLPFVAPLKFSTT-NHVLSNSRFSS 63
Query: 59 T--------VKCLAQKSQPSVSVNAPTNAG--QRVVVLVIGGGGREHALCYALKRSHSCD 108
++C++++SQPS+S+ N G +RV VLVIGGGGREHALC+ALKRS SCD
Sbjct: 64 NRIQRRLFLLRCVSEESQPSLSIG---NGGSEERVNVLVIGGGGREHALCHALKRSPSCD 120
Query: 109 AVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLV 168
+V CAPGNAGIS+SGDATC+PDLD+ D AVISFC+KW+VGLVVVGPE PLV+GLAN LV
Sbjct: 121 SVLCAPGNAGISSSGDATCVPDLDISDSLAVISFCQKWNVGLVVVGPEVPLVAGLANDLV 180
Query: 169 KAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK 228
KAGI TFGPSS+AAALEGSKNFMKNLC KY IPTAKYKTF+D +AAK+YIQE+GAPIV+K
Sbjct: 181 KAGILTFGPSSQAAALEGSKNFMKNLCHKYNIPTAKYKTFSDASAAKEYIQEQGAPIVIK 240
Query: 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGEN 288
ADGLAAGKGV VAM LEEA+EAVDSML+K FGSAGC+V++EEFLEGEEASFFALVDGEN
Sbjct: 241 ADGLAAGKGVTVAMELEEAFEAVDSMLVKGVFGSAGCQVVVEEFLEGEEASFFALVDGEN 300
Query: 289 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCK 348
AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQ VMESII PTVKGM+ EGCK
Sbjct: 301 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQDFVMESIIHPTVKGMAEEGCK 360
Query: 349 FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTL 408
FVGVL+AGLMIEKKSGLPKLIE+NVRFGDPECQVLM+RLESDLA+VLLAAC+GEL+GV+L
Sbjct: 361 FVGVLFAGLMIEKKSGLPKLIEFNVRFGDPECQVLMMRLESDLAKVLLAACKGELSGVSL 420
Query: 409 NWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGG 468
+WS SAMVVVMAS GYPGSYEKGS I+NLEEAE+VAP VK+FHAGT LD++GN +ATGG
Sbjct: 421 DWSKDSAMVVVMASNGYPGSYEKGSIIKNLEEAERVAPGVKVFHAGTGLDSEGNVVATGG 480
Query: 469 RVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFATRE 519
RVLGVTAKGKD+EEA++RAY AV++INWPGGF+R DIGWRAL QKQ AT+E
Sbjct: 481 RVLGVTAKGKDLEEARERAYSAVQQINWPGGFFRHDIGWRALRQKQVATKE 531
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449431878|ref|XP_004133727.1| PREDICTED: phosphoribosylamine--glycine ligase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/540 (73%), Positives = 456/540 (84%), Gaps = 27/540 (5%)
Query: 1 MACTSYCLSP-CVKLCS----SSSTKCFQFQKPFASSNN--------LRFSVGPNFSISF 47
M+C+++ L +K CS S +F F S+ + FSVG SISF
Sbjct: 1 MSCSTFNLGGGSLKFCSINKGSQIKNHLRFFNGFVSNGRCNLVSNSAISFSVG---SISF 57
Query: 48 N---PQG----SKSSFFSTV-KCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCY 99
N PQ ++S F S V C S+ S+S N + +RV+VLVIGGGGREHALCY
Sbjct: 58 NSLPPQDFQFHNRSRFSSHVINCSTFNSEASISSNKAND--ERVIVLVIGGGGREHALCY 115
Query: 100 ALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159
AL+RS SCDAVFCAPGNAGIS+SG+ATCI +LD+ D AVISFCRKW+VGLVV+GPEAPL
Sbjct: 116 ALQRSPSCDAVFCAPGNAGISSSGNATCISELDINDSAAVISFCRKWNVGLVVIGPEAPL 175
Query: 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQ 219
V+GLAN LVKAGI TFGPSSEAAALEGSKNFMK LCDKYGIPTAKY++FTDP+AAKQYIQ
Sbjct: 176 VAGLANDLVKAGIATFGPSSEAAALEGSKNFMKRLCDKYGIPTAKYQSFTDPSAAKQYIQ 235
Query: 220 EEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEAS 279
E+ PIV+KADGLAAGKGVIVA TLEEAYEAVD+ML+K AFGSAG RVI+EE+LEGEEAS
Sbjct: 236 EQSVPIVIKADGLAAGKGVIVATTLEEAYEAVDAMLVKGAFGSAGGRVIVEEYLEGEEAS 295
Query: 280 FFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTV 339
FFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPV+T+ELQS++MESIILPTV
Sbjct: 296 FFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVITRELQSIIMESIILPTV 355
Query: 340 KGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAAC 399
KGM+ EGCKFVGVL+AGLMIEKKSGLPKLIEYNVRFGDPECQVLM+RLESDLA+VL+A C
Sbjct: 356 KGMAEEGCKFVGVLFAGLMIEKKSGLPKLIEYNVRFGDPECQVLMIRLESDLAKVLMATC 415
Query: 400 RGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459
RGEL+GV+L+WSPGS+MVVVMASKGYPG+YEKG+ I+N+EEAE VAPSVK+FHAGT+ D+
Sbjct: 416 RGELSGVSLDWSPGSSMVVVMASKGYPGAYEKGTVIRNVEEAELVAPSVKVFHAGTSFDS 475
Query: 460 DGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFATRE 519
+GNFIA GGRVLGV AKGK++EEA+DR Y AVEEI W GGFYR+DIGWRAL +KQF+ +E
Sbjct: 476 EGNFIAVGGRVLGVAAKGKNIEEARDRTYRAVEEIRWSGGFYRKDIGWRAL-EKQFSLKE 534
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520996|ref|XP_004167518.1| PREDICTED: LOW QUALITY PROTEIN: phosphoribosylamine--glycine ligase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/540 (73%), Positives = 455/540 (84%), Gaps = 27/540 (5%)
Query: 1 MACTSYCLSP-CVKLCS----SSSTKCFQFQKPFASSNN--------LRFSVGPNFSISF 47
M+C+++ L +K CS S +F F S+ + FSVG SISF
Sbjct: 1 MSCSTFNLGGGSLKFCSINKGSQIKNHLRFFNGFVSNGRCNLVSNSAISFSVG---SISF 57
Query: 48 N---PQG----SKSSFFSTV-KCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCY 99
N PQ ++S F S V C S+ S+S N + +RV+VLVIGGGGREHALCY
Sbjct: 58 NSLPPQDFQFHNRSRFSSHVINCSTFNSEASISSNKAND--ERVIVLVIGGGGREHALCY 115
Query: 100 ALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159
AL+RS SCDAVFCAPGNAGIS+SG+ATCI +LD+ D AVISFCRKW+VGLVV+GPEAPL
Sbjct: 116 ALQRSPSCDAVFCAPGNAGISSSGNATCISELDINDSAAVISFCRKWNVGLVVIGPEAPL 175
Query: 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQ 219
V+GLAN LVKAGI TFGPSSEAAALEGSKNFMK LCDKYGIPTAKY++FTDP+AAKQYIQ
Sbjct: 176 VAGLANDLVKAGIATFGPSSEAAALEGSKNFMKRLCDKYGIPTAKYQSFTDPSAAKQYIQ 235
Query: 220 EEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEAS 279
E+ PIV+KADGLAAGKGVIVA TLEEAYEAVD+ML+K AFGSAG RVI+EE+LEGEEAS
Sbjct: 236 EQSVPIVIKADGLAAGKGVIVATTLEEAYEAVDAMLVKGAFGSAGGRVIVEEYLEGEEAS 295
Query: 280 FFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTV 339
FALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPV+T+ELQS++MESIILPTV
Sbjct: 296 XFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVITRELQSIIMESIILPTV 355
Query: 340 KGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAAC 399
KGM+ EGCKFVGVL+AGLMIEKKSGLPKLIEYNVRFGDPECQVLM+RLESDLA+VL+A C
Sbjct: 356 KGMAEEGCKFVGVLFAGLMIEKKSGLPKLIEYNVRFGDPECQVLMIRLESDLAKVLMATC 415
Query: 400 RGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459
RGEL+GV+L+WSPGS+MVVVMASKGYPG+YEKG+ I+N+EEAE VAPSVK+FHAGT+ D+
Sbjct: 416 RGELSGVSLDWSPGSSMVVVMASKGYPGAYEKGTVIRNVEEAELVAPSVKVFHAGTSFDS 475
Query: 460 DGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFATRE 519
+GNFIA GGRVLGV AKGK++EEA+DR Y AVEEI W GGFYR+DIGWRAL +KQF+ +E
Sbjct: 476 EGNFIAVGGRVLGVAAKGKNIEEARDRTYRAVEEIRWSGGFYRKDIGWRAL-EKQFSLKE 534
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37992755|gb|AAR06584.1| glycinamide ribonucleotide synthetase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/527 (76%), Positives = 444/527 (84%), Gaps = 23/527 (4%)
Query: 1 MACTSYCLSPCVKL-----CSSSSTKCFQ------FQKPFASSNNLRFSVGPNFSISFNP 49
M C S C+ L C + S K F F AS N FSV FN
Sbjct: 1 MTCISLCIGATTALKFVSNCQNHSAKLFSANQQRFFNLSSASWNCSNFSVRHTSCRGFNT 60
Query: 50 QGSKSSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDA 109
S S+ F+ S+SV+ N +RVVVLVIGGGGREHALC+AL+RS SCDA
Sbjct: 61 HKSFSTVFN-----------SLSVD-NGNPKERVVVLVIGGGGREHALCHALRRSPSCDA 108
Query: 110 VFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVK 169
+FCAPGNAGIS+SGDATCI DLDVLD AVI FCRKW VGLVVVGPEAPLV+GLAN LVK
Sbjct: 109 IFCAPGNAGISSSGDATCIADLDVLDSSAVIVFCRKWGVGLVVVGPEAPLVAGLANDLVK 168
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA 229
GIPTFGPSSEAAALEGSKNFMK+LCDKYGIPTAKY+ FTDP+AA +YI++EGAPIVVKA
Sbjct: 169 EGIPTFGPSSEAAALEGSKNFMKSLCDKYGIPTAKYQAFTDPSAANEYIKQEGAPIVVKA 228
Query: 230 DGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENA 289
DGLAAGKGVIVAMTLE+AYEAVDSML++NAFGSAG RVI+EE+LEGEEASFFALVDGE+A
Sbjct: 229 DGLAAGKGVIVAMTLEQAYEAVDSMLVENAFGSAGSRVIVEEYLEGEEASFFALVDGEHA 288
Query: 290 IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKF 349
IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESII PTVKGM+ EGCKF
Sbjct: 289 IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIIFPTVKGMAEEGCKF 348
Query: 350 VGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLN 409
VGVLYAGLMIEKK+G PKLIEYNVRFGDPECQVLMVRLESDLA VLLAACRG+L GV+L+
Sbjct: 349 VGVLYAGLMIEKKTGFPKLIEYNVRFGDPECQVLMVRLESDLAAVLLAACRGKLRGVSLD 408
Query: 410 WSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGR 469
WS GSAMVVVMASKGYPGSY+KG+ I LEEAEQVAPSVK+FHAGTA DADGNFIATGGR
Sbjct: 409 WSHGSAMVVVMASKGYPGSYQKGTVIHKLEEAEQVAPSVKVFHAGTAFDADGNFIATGGR 468
Query: 470 VLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFA 516
VLGVTAKG+D+EEA+DRAY AVE+I+WPGGFYRRDIGWRAL QKQ++
Sbjct: 469 VLGVTAKGEDLEEARDRAYQAVEQISWPGGFYRRDIGWRALSQKQYS 515
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849296|ref|XP_002892529.1| phosphoribosylamine--glycine ligase [Arabidopsis lyrata subsp. lyrata] gi|297338371|gb|EFH68788.1| phosphoribosylamine--glycine ligase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/518 (74%), Positives = 444/518 (85%), Gaps = 15/518 (2%)
Query: 12 VKLCSSSSTKCFQFQKPFASSNNLRFSVGPNFSISFNPQGSKSSFFST--------VKCL 63
+ L S++ TK F FA+SN+L F FS + G S F S ++C+
Sbjct: 17 INLFSNNPTKPFLLSLRFATSNSLPFVAPLKFSTT--NHGLSSRFSSNRFQRRHFLLRCV 74
Query: 64 AQKSQPSVSVNAPTNAG--QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISN 121
+++S+ S+SV N G +RV VLVIGGGGREHALCYALKRS SCD+V CAPGNAGIS+
Sbjct: 75 SEESEQSLSVG---NGGSEERVNVLVIGGGGREHALCYALKRSPSCDSVLCAPGNAGISS 131
Query: 122 SGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEA 181
SGDATC+PDLD+ D AVISFC+KW+VGLVV+GPE PLV+GLAN LVKAGI TFGP+S+A
Sbjct: 132 SGDATCVPDLDISDSLAVISFCQKWNVGLVVIGPEVPLVAGLANDLVKAGILTFGPTSQA 191
Query: 182 AALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVA 241
AALEGSKNFMKNLC KY IPTAKYKTF+D +AAK+YIQE+GAPIV+KADGLAAGKGV VA
Sbjct: 192 AALEGSKNFMKNLCLKYNIPTAKYKTFSDASAAKEYIQEQGAPIVIKADGLAAGKGVTVA 251
Query: 242 MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRV 301
M LEEA+EAVDSML+K FGSAGC+V++EEFLEGEEASFFALVDGENAIPLESAQDHKRV
Sbjct: 252 MELEEAFEAVDSMLVKGVFGSAGCQVVVEEFLEGEEASFFALVDGENAIPLESAQDHKRV 311
Query: 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEK 361
GDGDTGPNTGGMGAYSPAPVLT+ELQ VMESII PTVKGM+ EGCKFVGVL+AGLMIEK
Sbjct: 312 GDGDTGPNTGGMGAYSPAPVLTRELQDFVMESIIHPTVKGMAEEGCKFVGVLFAGLMIEK 371
Query: 362 KSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMA 421
KSGLPKLIE+NVRFGDPECQVLM+RLESDLA+VLLAAC+GEL+GV+L+WS SAMVVVMA
Sbjct: 372 KSGLPKLIEFNVRFGDPECQVLMMRLESDLAKVLLAACKGELSGVSLDWSKDSAMVVVMA 431
Query: 422 SKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVE 481
S GYPG+YEKGS I+NLEEAE VAP VK+FHAGT LD++GN IATGGRVLGVTAKG D+E
Sbjct: 432 SNGYPGAYEKGSIIRNLEEAETVAPGVKVFHAGTDLDSEGNVIATGGRVLGVTAKGNDLE 491
Query: 482 EAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFATRE 519
EA++RAY AV++INWPGGF+R DIGWRAL QKQ AT+E
Sbjct: 492 EARERAYSAVQQINWPGGFFRHDIGWRALRQKQVATKE 529
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | ||||||
| TAIR|locus:2024321 | 532 | PUR2 "purine biosynthesis 2" [ | 0.988 | 0.964 | 0.730 | 4.5e-201 | |
| TIGR_CMR|SPO_1345 | 420 | SPO_1345 "phosphoribosylamine- | 0.789 | 0.976 | 0.569 | 7.2e-123 | |
| UNIPROTKB|Q9KV81 | 429 | purD "Phosphoribosylamine--gly | 0.803 | 0.972 | 0.528 | 5.8e-114 | |
| TIGR_CMR|VC_0275 | 429 | VC_0275 "phosphoribosylamine-- | 0.803 | 0.972 | 0.528 | 5.8e-114 | |
| UNIPROTKB|P15640 | 429 | purD [Escherichia coli K-12 (t | 0.805 | 0.974 | 0.540 | 2.5e-113 | |
| TIGR_CMR|CPS_0555 | 431 | CPS_0555 "phosphoribosylamine- | 0.805 | 0.969 | 0.509 | 1e-107 | |
| TIGR_CMR|GSU_0610 | 423 | GSU_0610 "phosphoribosylamine- | 0.791 | 0.971 | 0.535 | 4.4e-107 | |
| TIGR_CMR|ECH_1006 | 421 | ECH_1006 "phosphoribosylamine- | 0.791 | 0.976 | 0.473 | 1.3e-102 | |
| UNIPROTKB|A0A547 | 1003 | GART "Glycinamide ribonucleoti | 0.793 | 0.410 | 0.502 | 2.3e-101 | |
| UNIPROTKB|F1P3N9 | 1005 | GART "Trifunctional purine bio | 0.793 | 0.409 | 0.502 | 2.3e-101 |
| TAIR|locus:2024321 PUR2 "purine biosynthesis 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1946 (690.1 bits), Expect = 4.5e-201, P = 4.5e-201
Identities = 388/531 (73%), Positives = 444/531 (83%)
Query: 3 CTSYCL--SPCVKLCSSSS--TKCFQFQKPFASSNNLRFSVGPNFSISFNPQGSKSSFFS 58
C S C S + L S+++ TK F FASSN+L F FS + N S S F S
Sbjct: 5 CASNCYPSSSSINLFSNNNNPTKPFLLSLRFASSNSLPFVAPLKFSTT-NHVLSNSRFSS 63
Query: 59 T--------VKCLAQKSQPSVSVNAPTNAG--QRXXXXXXXXXXREHALCYALKRSHSCD 108
++C++++SQPS+S+ N G +R REHALC+ALKRS SCD
Sbjct: 64 NRIQRRLFLLRCVSEESQPSLSIG---NGGSEERVNVLVIGGGGREHALCHALKRSPSCD 120
Query: 109 AVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLV 168
+V CAPGNAGIS+SGDATC+PDLD+ D AVISFC+KW+VGLVVVGPE PLV+GLAN LV
Sbjct: 121 SVLCAPGNAGISSSGDATCVPDLDISDSLAVISFCQKWNVGLVVVGPEVPLVAGLANDLV 180
Query: 169 KAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK 228
KAGI TFGPSS+AAALEGSKNFMKNLC KY IPTAKYKTF+D +AAK+YIQE+GAPIV+K
Sbjct: 181 KAGILTFGPSSQAAALEGSKNFMKNLCHKYNIPTAKYKTFSDASAAKEYIQEQGAPIVIK 240
Query: 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGEN 288
ADGLAAGKGV VAM LEEA+EAVDSML+K FGSAGC+V++EEFLEGEEASFFALVDGEN
Sbjct: 241 ADGLAAGKGVTVAMELEEAFEAVDSMLVKGVFGSAGCQVVVEEFLEGEEASFFALVDGEN 300
Query: 289 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCK 348
AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQ VMESII PTVKGM+ EGCK
Sbjct: 301 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQDFVMESIIHPTVKGMAEEGCK 360
Query: 349 FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTL 408
FVGVL+AGLMIEKKSGLPKLIE+NVRFGDPECQVLM+RLESDLA+VLLAAC+GEL+GV+L
Sbjct: 361 FVGVLFAGLMIEKKSGLPKLIEFNVRFGDPECQVLMMRLESDLAKVLLAACKGELSGVSL 420
Query: 409 NWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGG 468
+WS SAMVVVMAS GYPGSYEKGS I+NLEEAE+VAP VK+FHAGT LD++GN +ATGG
Sbjct: 421 DWSKDSAMVVVMASNGYPGSYEKGSIIKNLEEAERVAPGVKVFHAGTGLDSEGNVVATGG 480
Query: 469 RVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFATRE 519
RVLGVTAKGKD+EEA++RAY AV++INWPGGF+R DIGWRAL QKQ AT+E
Sbjct: 481 RVLGVTAKGKDLEEARERAYSAVQQINWPGGFFRHDIGWRALRQKQVATKE 531
|
|
| TIGR_CMR|SPO_1345 SPO_1345 "phosphoribosylamine--glycine ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
Identities = 238/418 (56%), Positives = 302/418 (72%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHAL +A+ ++ CD + APGNAGI+ A C +LD++DG V +F + ++ V+
Sbjct: 11 REHALAWAVMQNPKCDKLIVAPGNAGIAQI--AECA-ELDIMDGGLVATFAEENAIDFVI 67
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPEAPL +G+A++L +AG FGPS+ AA LE SK+F K +CD G PTA Y FT
Sbjct: 68 VGPEAPLAAGVADRLREAGFLVFGPSAAAARLEASKSFTKEICDAAGAPTAGYARFTQAG 127
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
AK YI+ +GAPIV+KADGLAAGKGVIVAM A EA+D ML AFG AG V+IEEF
Sbjct: 128 PAKDYIRAQGAPIVIKADGLAAGKGVIVAMDEATALEAIDDML-GGAFGDAGAEVVIEEF 186
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
+EGEEAS F LVDGE + + +AQDHKRVG+GDTGPNTGGMGAYSPAPVL+ E+++ ME
Sbjct: 187 MEGEEASLFVLVDGEEVLSIGTAQDHKRVGEGDTGPNTGGMGAYSPAPVLSAEVEARAME 246
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
I+ PT+ M+ G F GVLY GLMI K G P+L+EYNVRFGDPECQVLM+RL +
Sbjct: 247 EIVKPTMAEMARRGVPFQGVLYVGLMI--KDGAPRLVEYNVRFGDPECQVLMLRLGAQAM 304
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
+++ A G L +NW+ A+ VVMA+ GYPGSY+KGSEI+ L+ + + ++ +FH
Sbjct: 305 DLMHATAEGRLREARVNWAEDHAITVVMAANGYPGSYQKGSEIKGLDTLPEDSRNM-VFH 363
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
AGTA +G +ATGGRVL VTA+G + EA+DRAY VE I+WPGGFYRRDIGWRAL
Sbjct: 364 AGTAA-REGAIVATGGRVLNVTARGDSLAEARDRAYAMVEAIDWPGGFYRRDIGWRAL 420
|
|
| UNIPROTKB|Q9KV81 purD "Phosphoribosylamine--glycine ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 223/422 (52%), Positives = 293/422 (69%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHAL + + ++ D ++ APGNAG + + ++ + D A+++F + ++ L +
Sbjct: 11 REHALAWKVAQNPQVDTIYVAPGNAGTALEHKVQNV-NIGITDIPALVAFAQDKAIELTI 69
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPEAPLV G+ + AG+P FGP+ AA LEGSK F K+ ++ IPTA Y FT+
Sbjct: 70 VGPEAPLVIGVVDAFRAAGLPIFGPTQGAAQLEGSKAFTKDFLARHNIPTAAYANFTEIE 129
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
A Y++E+GAPIVVKADGLAAGKGVIVAMTL+EA +A+ ML NAFGSAG RV++EEF
Sbjct: 130 PALAYVREKGAPIVVKADGLAAGKGVIVAMTLQEAEDAIQDMLAGNAFGSAGSRVVVEEF 189
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
L+GEEASF +VDGEN +P+ ++QDHKRVGD DTGPNTGGMGAYSPAPV+T+++ VM
Sbjct: 190 LDGEEASFIVMVDGENVLPMATSQDHKRVGDADTGPNTGGMGAYSPAPVVTQDVHDRVMR 249
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
+I PTV+GM+AEG + G LYAGLMI+ +G PK+IEYN RFGDPE Q +M+RL+SDL
Sbjct: 250 EVIDPTVRGMAAEGNTYTGFLYAGLMIDS-TGAPKVIEYNCRFGDPETQPIMMRLQSDLV 308
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
E+ AA G+L V W P +++ VV+A+ GYPG Y KG I L E K+FH
Sbjct: 309 ELCQAAIAGKLDQVESKWDPRASIGVVLAAGGYPGDYAKGEVISGLPTQESAGQ--KVFH 366
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512
AGT D + GGRVL TA G V EAQ RAY ++I+W G F RRDIG+RA+ +
Sbjct: 367 AGTETQGD-QVVTNGGRVLCATALGNTVLEAQQRAYQLADQIHWNGMFCRRDIGYRAIAR 425
Query: 513 KQ 514
+Q
Sbjct: 426 EQ 427
|
|
| TIGR_CMR|VC_0275 VC_0275 "phosphoribosylamine--glycine ligase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 223/422 (52%), Positives = 293/422 (69%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHAL + + ++ D ++ APGNAG + + ++ + D A+++F + ++ L +
Sbjct: 11 REHALAWKVAQNPQVDTIYVAPGNAGTALEHKVQNV-NIGITDIPALVAFAQDKAIELTI 69
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPEAPLV G+ + AG+P FGP+ AA LEGSK F K+ ++ IPTA Y FT+
Sbjct: 70 VGPEAPLVIGVVDAFRAAGLPIFGPTQGAAQLEGSKAFTKDFLARHNIPTAAYANFTEIE 129
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
A Y++E+GAPIVVKADGLAAGKGVIVAMTL+EA +A+ ML NAFGSAG RV++EEF
Sbjct: 130 PALAYVREKGAPIVVKADGLAAGKGVIVAMTLQEAEDAIQDMLAGNAFGSAGSRVVVEEF 189
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
L+GEEASF +VDGEN +P+ ++QDHKRVGD DTGPNTGGMGAYSPAPV+T+++ VM
Sbjct: 190 LDGEEASFIVMVDGENVLPMATSQDHKRVGDADTGPNTGGMGAYSPAPVVTQDVHDRVMR 249
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
+I PTV+GM+AEG + G LYAGLMI+ +G PK+IEYN RFGDPE Q +M+RL+SDL
Sbjct: 250 EVIDPTVRGMAAEGNTYTGFLYAGLMIDS-TGAPKVIEYNCRFGDPETQPIMMRLQSDLV 308
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
E+ AA G+L V W P +++ VV+A+ GYPG Y KG I L E K+FH
Sbjct: 309 ELCQAAIAGKLDQVESKWDPRASIGVVLAAGGYPGDYAKGEVISGLPTQESAGQ--KVFH 366
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512
AGT D + GGRVL TA G V EAQ RAY ++I+W G F RRDIG+RA+ +
Sbjct: 367 AGTETQGD-QVVTNGGRVLCATALGNTVLEAQQRAYQLADQIHWNGMFCRRDIGYRAIAR 425
Query: 513 KQ 514
+Q
Sbjct: 426 EQ 427
|
|
| UNIPROTKB|P15640 purD [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
Identities = 228/422 (54%), Positives = 292/422 (69%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHAL + +S + VF APGNAG + + + V D A++ F + + L +
Sbjct: 11 REHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVA-IGVTDIPALLDFAQNEKIDLTI 69
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPEAPLV G+ + AG+ FGP++ AA LEGSK F K+ ++ IPTA+Y+ FT+
Sbjct: 70 VGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVE 129
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
A Y++E+GAPIV+KADGLAAGKGVIVAMTLEEA AV ML NAFG AG R++IEEF
Sbjct: 130 PALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHRIVIEEF 189
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
L+GEEASF +VDGE+ +P+ ++QDHKRVGD DTGPNTGGMGAYSPAPV+T ++ ME
Sbjct: 190 LDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTME 249
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
II PTVKGM+AEG + G LYAGLMI+K+ G PK+IE+N RFGDPE Q +M+R++SDL
Sbjct: 250 RIIWPTVKGMAAEGNTYTGFLYAGLMIDKQ-GNPKVIEFNCRFGDPETQPIMLRMKSDLV 308
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
E+ LAAC +L T W +++ VVMA+ GYPG Y G I L E+VA K+FH
Sbjct: 309 ELCLAACESKLDEKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLP-LEEVAGG-KVFH 366
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512
AGT L D + GGRVL VTA G V EAQ RAY + +I+W F R+DIGWRA+ +
Sbjct: 367 AGTKLADDEQVVTNGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIER 426
Query: 513 KQ 514
+Q
Sbjct: 427 EQ 428
|
|
| TIGR_CMR|CPS_0555 CPS_0555 "phosphoribosylamine--glycine ligase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 215/422 (50%), Positives = 281/422 (66%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHAL + +S VF APGNAG + + +DV D A+++F + V L +
Sbjct: 11 REHALAWKAAQSSQVTKVFVAPGNAGTATEAKLENVA-IDVSDNAALVAFAQSEDVALTI 69
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPE PLV G+ + G+ FGPS++AA LEGSK+F K+ + IP+ Y FT+
Sbjct: 70 VGPEQPLVDGVVDAFQAQGLAIFGPSAKAAQLEGSKSFTKDFLARNKIPSGSYAKFTEVE 129
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
A Y++E+GAPIVVKADGLAAGKGVIVA+TL EA +A+ ML NAFG AG RV+IEEF
Sbjct: 130 PALAYVREQGAPIVVKADGLAAGKGVIVALTLTEAEDAITDMLAGNAFGDAGHRVVIEEF 189
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
LEGEEASF +VDG+N +P+ ++QDHKR +GD GPNTGGMGAYSPAPV+T E+ +M
Sbjct: 190 LEGEEASFIVMVDGKNVLPMATSQDHKRALNGDLGPNTGGMGAYSPAPVVTPEIHDRIMA 249
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
+I+PTV+GM+ E + G LYAGLMI + G P +IEYN RFGDPE Q +M+RL+SDL
Sbjct: 250 EVIMPTVEGMANEDAPYSGFLYAGLMIAE-DGTPNVIEYNCRFGDPETQPIMMRLQSDLV 308
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
E+ LAA RGEL VT+ + +A+ VV+A++ YP Y KG I L+ V K FH
Sbjct: 309 ELCLAATRGELDKVTIEFDSRAAVGVVLAAQSYPADYPKGDVISGLDTNNNVL--AKTFH 366
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512
AGT L+ G + GGRVL TA G V EAQ AY + +I+W G +R DI +RA+ +
Sbjct: 367 AGTKLNEQGEVVTNGGRVLCATALGNTVTEAQQTAYELLHQISWQGVEFRTDIAYRAIER 426
Query: 513 KQ 514
+Q
Sbjct: 427 EQ 428
|
|
| TIGR_CMR|GSU_0610 GSU_0610 "phosphoribosylamine--glycine ligase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
Identities = 224/418 (53%), Positives = 278/418 (66%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHAL + + +S V+CAPGN GI + + +D LDG A +F + S+ L V
Sbjct: 11 REHALVWKIAQSPLVSKVYCAPGNPGIGLIAENVSLA-VDDLDGLA--AFATEQSIDLTV 67
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPE PL G+ ++ + G+ FG AA +E SK F K+L KY +PTA Y FT+
Sbjct: 68 VGPELPLSLGIVDRFEEKGLLIFGARRNAAIIEASKAFSKDLMKKYQVPTAAYDVFTEVE 127
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
A +I G PIVVKADGLAAGKGVI+A T EEA AV ML NAFG AG RV+IEEF
Sbjct: 128 PAVAFIDRVGVPIVVKADGLAAGKGVIIAHTREEAVGAVMDMLSGNAFGDAGSRVVIEEF 187
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
L GEEASF A DG+N IPL SAQDHK V DGDTGPNTGGMGAYSPAPV+T + VM
Sbjct: 188 LTGEEASFLAFTDGKNIIPLASAQDHKAVFDGDTGPNTGGMGAYSPAPVVTPAIHDKVMA 247
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
++ TV GM+AEG + GVLYAGLMI K +E+N RFGDPECQ L++R++SD+
Sbjct: 248 EVMRRTVDGMAAEGRPYRGVLYAGLMINGDQ--VKTLEFNARFGDPECQPLLMRMKSDIV 305
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
VLLA RG+L+G+ L W +A+ VVMAS GYP Y KG EI+ LE+A ++ + +FH
Sbjct: 306 PVLLAVARGDLSGIELEWHDMAAVCVVMASGGYPADYRKGDEIRGLEDAARME-DLFVFH 364
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
AGT+ +G + +GGRVLGVTA G V EA DRAY V I+W G YR+DIG +AL
Sbjct: 365 AGTSRK-NGRIVTSGGRVLGVTALGATVGEAIDRAYRGVAAISWDGVHYRKDIGAKAL 421
|
|
| TIGR_CMR|ECH_1006 ECH_1006 "phosphoribosylamine--glycine ligase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 198/418 (47%), Positives = 287/418 (68%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REH++ + +++S + +F APG G+S D I D+D+ VI C+K + LVV
Sbjct: 11 REHSMLHHIRKSTLLNKLFIAPGREGMSGLAD---IIDIDINSTIEVIQVCKKEKIELVV 67
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
+GPE PL++GL++ L + GI FGPS AA LE SK F K LC +YGIPTAKY F D N
Sbjct: 68 IGPETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTN 127
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
+A ++I + P+VVKADGLA GKG ++ T EEAY AVD+ML+ + FG AGC +IIEEF
Sbjct: 128 SAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEF 187
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
LEG+E SFF LVDG N + L AQD+K +GD + GPNTGGMG+YS ++T+E++ ++++
Sbjct: 188 LEGKEISFFTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQ 247
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
II PT+K M +F G+L+AG++I+K PKL+EYNVRFGDPE Q ++ RL SD
Sbjct: 248 KIIYPTIKAMFNMNIQFRGLLFAGIIIKKNE--PKLLEYNVRFGDPETQSILPRLNSDFL 305
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
++L +G+L ++ S +A+ VV+AS+GYPG Y+K S I +E E++ P+V++ H
Sbjct: 306 KLLSLTAKGKLGNESVELSKKAALCVVVASRGYPGEYKKNSIINGIENIEKL-PNVQLLH 364
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
AGT + + N+++ GRV+ V A+G+++ A+ +AY A++ ++WP G YR DIG AL
Sbjct: 365 AGTRREGN-NWVSDSGRVINVVAQGENLASAKHQAYAALDLLDWPDGIYRYDIGSCAL 421
|
|
| UNIPROTKB|A0A547 GART "Glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 211/420 (50%), Positives = 278/420 (66%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHAL + L +S VF APGNAG +NSG + + V + A+ FCR + LVV
Sbjct: 13 REHALAWKLAQSPHVKQVFVAPGNAGTANSGKISNSA-VSVSNHAALAQFCRDQEIRLVV 71
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPE PL +G+ + L AG+ FGP++ AA LE SK+F K+ D++GIPTA++K+FTDP
Sbjct: 72 VGPEVPLAAGIVDDLTAAGVRCFGPTARAAQLESSKSFTKSFLDRHGIPTARWKSFTDPK 131
Query: 213 AAKQYIQEEGAP-IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEE 271
AA +I P +VVKA GLAAGKGVIVA EEA +AV+ ++ FG+AG V++EE
Sbjct: 132 AACSFINSANFPALVVKASGLAAGKGVIVASNKEEACKAVNEIMQDKTFGTAGETVVVEE 191
Query: 272 FLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVM 331
LEGEE S DG P+ AQDHKR+ DGD GPNTGGMGAYSPAP ++K+L +
Sbjct: 192 LLEGEEVSCLCFTDGVTIAPMPPAQDHKRLKDGDEGPNTGGMGAYSPAPQISKDLLLKIR 251
Query: 332 ESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDL 391
E+++ TV GM EG ++GVLYAGLM+ K PK++E+N RFGDPECQV++ L+SDL
Sbjct: 252 ETVLQKTVDGMRKEGIPYLGVLYAGLMLTKDG--PKVLEFNCRFGDPECQVILPLLKSDL 309
Query: 392 AEVLLAACRGELTGVTLNWSPGSAMV-VVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKI 450
EV+ A +L+ W SA V VVMAS+GYPG+Y KG EI L +A+++ +++
Sbjct: 310 YEVMQAVINKKLSSSMPIWYEDSAAVTVVMASEGYPGTYPKGLEITGLSKAKELG--LEV 367
Query: 451 FHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
FHAGTAL DG + GGRVL VTA +D+ A A V IN+ G YR+DIG+RA+
Sbjct: 368 FHAGTALK-DGKVVTNGGRVLTVTAIKEDLMTALQEANKGVAAINFKGSIYRKDIGYRAI 426
|
|
| UNIPROTKB|F1P3N9 GART "Trifunctional purine biosynthetic protein adenosine-3" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 211/420 (50%), Positives = 278/420 (66%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHAL + L +S VF APGNAG +NSG + + V + A+ FCR + LVV
Sbjct: 13 REHALAWKLAQSPHVKQVFVAPGNAGTANSGKISNSA-VSVSNHAALAQFCRDQEIRLVV 71
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPE PL +G+ + L AG+ FGP++ AA LE SK+F K+ D++GIPTA++K+FTDP
Sbjct: 72 VGPEVPLAAGIVDDLTAAGVRCFGPTARAAQLESSKSFTKSFLDRHGIPTARWKSFTDPK 131
Query: 213 AAKQYIQEEGAP-IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEE 271
AA +I P +VVKA GLAAGKGVIVA EEA +AV+ ++ FG+AG V++EE
Sbjct: 132 AACSFINSANFPALVVKASGLAAGKGVIVASNKEEACKAVNEIMQDKTFGTAGETVVVEE 191
Query: 272 FLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVM 331
LEGEE S DG P+ AQDHKR+ DGD GPNTGGMGAYSPAP ++K+L +
Sbjct: 192 LLEGEEVSCLCFTDGVTIAPMPPAQDHKRLKDGDEGPNTGGMGAYSPAPQISKDLLLKIR 251
Query: 332 ESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDL 391
E+++ TV GM EG ++GVLYAGLM+ K PK++E+N RFGDPECQV++ L+SDL
Sbjct: 252 ETVLQKTVDGMRKEGIPYLGVLYAGLMLTKDG--PKVLEFNCRFGDPECQVILPLLKSDL 309
Query: 392 AEVLLAACRGELTGVTLNWSPGSAMV-VVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKI 450
EV+ A +L+ W SA V VVMAS+GYPG+Y KG EI L +A+++ +++
Sbjct: 310 YEVMQAVINKKLSSSMPIWYEDSAAVTVVMASEGYPGTYPKGLEITGLSKAKELG--LEV 367
Query: 451 FHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
FHAGTAL DG + GGRVL VTA +D+ A A V IN+ G YR+DIG+RA+
Sbjct: 368 FHAGTALK-DGKVVTNGGRVLTVTAIKEDLMTALQEANKGVAAINFKGSIYRKDIGYRAI 426
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8YRD8 | PUR2_NOSS1 | 6, ., 3, ., 4, ., 1, 3 | 0.4730 | 0.8034 | 0.9811 | yes | no |
| P43845 | PUR2_HAEIN | 6, ., 3, ., 4, ., 1, 3 | 0.5268 | 0.8169 | 0.9883 | yes | no |
| Q8PQ21 | PUR2_XANAC | 6, ., 3, ., 4, ., 1, 3 | 0.5254 | 0.8227 | 0.9907 | yes | no |
| Q8X612 | PUR2_ECO57 | 6, ., 3, ., 4, ., 1, 3 | 0.5462 | 0.8169 | 0.9883 | N/A | no |
| Q9JWU6 | PUR2_NEIMA | 6, ., 3, ., 4, ., 1, 3 | 0.5234 | 0.8073 | 0.9905 | yes | no |
| O66949 | PUR2_AQUAE | 6, ., 3, ., 4, ., 1, 3 | 0.4707 | 0.8015 | 0.9811 | yes | no |
| Q8KBV8 | PUR2_CHLTE | 6, ., 3, ., 4, ., 1, 3 | 0.4800 | 0.8131 | 0.9929 | yes | no |
| Q88DK2 | PUR2_PSEPK | 6, ., 3, ., 4, ., 1, 3 | 0.5302 | 0.8169 | 0.9837 | yes | no |
| Q7UPZ8 | PUR2_RHOBA | 6, ., 3, ., 4, ., 1, 3 | 0.5230 | 0.8053 | 0.9565 | yes | no |
| Q8UHN3 | PUR2_AGRT5 | 6, ., 3, ., 4, ., 1, 3 | 0.5651 | 0.8092 | 0.9929 | yes | no |
| P12039 | PUR2_BACSU | 6, ., 3, ., 4, ., 1, 3 | 0.5104 | 0.8053 | 0.9905 | yes | no |
| Q9HUV8 | PUR2_PSEAE | 6, ., 3, ., 4, ., 1, 3 | 0.5372 | 0.8169 | 0.9883 | yes | no |
| Q8Z334 | PUR2_SALTI | 6, ., 3, ., 4, ., 1, 3 | 0.5558 | 0.8208 | 0.9930 | N/A | no |
| P15640 | PUR2_ECOLI | 6, ., 3, ., 4, ., 1, 3 | 0.5465 | 0.8208 | 0.9930 | N/A | no |
| Q8G2B1 | PUR2_BRUSU | 6, ., 3, ., 4, ., 1, 3 | 0.5674 | 0.8131 | 0.9882 | yes | no |
| Q87VR8 | PUR2_PSESM | 6, ., 3, ., 4, ., 1, 3 | 0.5103 | 0.8265 | 0.9953 | yes | no |
| P57829 | PUR2_PASMU | 6, ., 3, ., 4, ., 1, 3 | 0.5186 | 0.8169 | 0.9883 | yes | no |
| Q8Y6C6 | PUR2_LISMO | 6, ., 3, ., 4, ., 1, 3 | 0.4682 | 0.8034 | 0.9928 | yes | no |
| Q9KV81 | PUR2_VIBCH | 6, ., 3, ., 4, ., 1, 3 | 0.5325 | 0.8188 | 0.9906 | yes | no |
| B4REI0 | PUR2_PHEZH | 6, ., 3, ., 4, ., 1, 3 | 0.4800 | 0.8053 | 0.9881 | yes | no |
| Q8FB69 | PUR2_ECOL6 | 6, ., 3, ., 4, ., 1, 3 | 0.5534 | 0.8208 | 0.9930 | yes | no |
| P52420 | PUR2_ARATH | 6, ., 3, ., 4, ., 1, 3 | 0.7476 | 0.9884 | 0.9642 | yes | no |
| Q87D59 | PUR2_XYLFT | 6, ., 3, ., 4, ., 1, 3 | 0.5116 | 0.8188 | 0.9883 | yes | no |
| Q9FDL5 | PUR2_ZYMMO | 6, ., 3, ., 4, ., 1, 3 | 0.5200 | 0.7957 | 0.9904 | yes | no |
| Q9JXA3 | PUR2_NEIMB | 6, ., 3, ., 4, ., 1, 3 | 0.5211 | 0.8073 | 0.9905 | yes | no |
| Q986A5 | PUR2_RHILO | 6, ., 3, ., 4, ., 1, 3 | 0.5488 | 0.8111 | 0.9905 | yes | no |
| P26977 | PUR2_SALTY | 6, ., 3, ., 4, ., 1, 3 | 0.5558 | 0.8208 | 0.9930 | yes | no |
| Q46482 | PUR2_ALLVD | 6, ., 3, ., 4, ., 1, 3 | 0.5081 | 0.8169 | 0.9906 | yes | no |
| Q92RL0 | PUR2_RHIME | 6, ., 3, ., 4, ., 1, 3 | 0.5757 | 0.8073 | 0.9905 | yes | no |
| Q9PC09 | PUR2_XYLFA | 6, ., 3, ., 4, ., 1, 3 | 0.5127 | 0.8246 | 0.9794 | yes | no |
| Q8DD07 | PUR2_VIBVU | 6, ., 3, ., 4, ., 1, 3 | 0.5348 | 0.8188 | 0.9906 | yes | no |
| Q71YQ4 | PUR2_LISMF | 6, ., 3, ., 4, ., 1, 3 | 0.4705 | 0.8034 | 0.9928 | yes | no |
| Q87KS8 | PUR2_VIBPA | 6, ., 3, ., 4, ., 1, 3 | 0.5302 | 0.8188 | 0.9906 | yes | no |
| Q8PD48 | PUR2_XANCP | 6, ., 3, ., 4, ., 1, 3 | 0.5300 | 0.8227 | 0.9907 | yes | no |
| Q9KF52 | PUR2_BACHD | 6, ., 3, ., 4, ., 1, 3 | 0.4620 | 0.8131 | 0.9859 | yes | no |
| Q92AP4 | PUR2_LISIN | 6, ., 3, ., 4, ., 1, 3 | 0.4541 | 0.8034 | 0.9928 | yes | no |
| Q8ZAR2 | PUR2_YERPE | 6, ., 3, ., 4, ., 1, 3 | 0.5163 | 0.8169 | 0.9906 | yes | no |
| Q8YFK1 | PUR2_BRUME | 6, ., 3, ., 4, ., 1, 3 | 0.5651 | 0.8131 | 0.9882 | yes | no |
| Q7MGT4 | PUR2_VIBVY | 6, ., 3, ., 4, ., 1, 3 | 0.5348 | 0.8188 | 0.9906 | yes | no |
| Q8XXC4 | PUR2_RALSO | 6, ., 3, ., 4, ., 1, 3 | 0.4906 | 0.8053 | 0.9905 | yes | no |
| Q9ABD2 | PUR2_CAUCR | 6, ., 3, ., 4, ., 1, 3 | 0.4907 | 0.8188 | 0.9953 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.4 | 0.983 |
| 3rd Layer | 6.3.4.13 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.86.80.1 | hypothetical protein (441 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GART | hypothetical protein (215 aa) | • | • | • | • | • | 0.998 | |||
 | gw1.IV.836.1 | amidophosphoribosyltransferase (EC-2.4.2.14) (485 aa) | • | • | • | • | • | 0.997 | |||
 | gw1.IX.1498.1 | SubName- Full=Putative uncharacterized protein; (485 aa) | • | • | • | • | • | 0.997 | |||
 | estExt_fgenesh4_pm.C_LG_X0439 | aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase (E [...] (545 aa) | • | • | • | • | • | 0.988 | |||
 | gw1.II.2846.1 | phosphoribosylformylglycinamidine cyclo-ligase (EC-6.3.3.1) (321 aa) | • | • | • | • | • | • | 0.980 | ||
 | fgenesh4_pm.C_LG_XIV000303 | phosphoribosylformylglycinamidine cyclo-ligase (EC-6.3.3.1) (337 aa) | • | • | • | • | • | • | 0.979 | ||
 | gw1.III.614.1 | GMP synthetase (EC-6.3.5.2) (434 aa) | • | • | • | • | 0.976 | ||||
 | estExt_fgenesh4_pm.C_LG_XIII0184 | phosphoribosylaminoimidazole carboxylase (EC-4.1.1.21) (606 aa) | • | • | • | • | • | • | • | 0.973 | |
 | estExt_fgenesh4_pg.C_LG_XVI0748 | adenylosuccinate synthase (EC-6.3.4.4); Plays an important role in the de novo pathway of purin [...] (491 aa) | • | • | • | • | 0.962 | ||||
 | gw1.21444.1.1 | Phosphoribosylaminoimidazole-succinocarboxamide synthase (285 aa) | • | • | • | • | • | 0.953 | |||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 519 | |||
| PLN02257 | 434 | PLN02257, PLN02257, phosphoribosylamine--glycine l | 0.0 | |
| PRK00885 | 420 | PRK00885, PRK00885, phosphoribosylamine--glycine l | 0.0 | |
| COG0151 | 428 | COG0151, PurD, Phosphoribosylamine-glycine ligase | 0.0 | |
| TIGR00877 | 422 | TIGR00877, purD, phosphoribosylamine--glycine liga | 0.0 | |
| PRK13789 | 426 | PRK13789, PRK13789, phosphoribosylamine--glycine l | 1e-138 | |
| PRK13790 | 379 | PRK13790, PRK13790, phosphoribosylamine--glycine l | 1e-118 | |
| pfam01071 | 193 | pfam01071, GARS_A, Phosphoribosylglycinamide synth | 1e-110 | |
| PRK05784 | 486 | PRK05784, PRK05784, phosphoribosylamine--glycine l | 1e-65 | |
| PRK06395 | 435 | PRK06395, PRK06395, phosphoribosylamine--glycine l | 3e-54 | |
| pfam02844 | 101 | pfam02844, GARS_N, Phosphoribosylglycinamide synth | 1e-44 | |
| pfam02843 | 92 | pfam02843, GARS_C, Phosphoribosylglycinamide synth | 3e-39 | |
| COG0439 | 449 | COG0439, AccC, Biotin carboxylase [Lipid metabolis | 4e-15 | |
| pfam13535 | 183 | pfam13535, ATP-grasp_4, ATP-grasp domain | 2e-14 | |
| PRK08654 | 499 | PRK08654, PRK08654, pyruvate carboxylase subunit A | 2e-08 | |
| PRK12767 | 326 | PRK12767, PRK12767, carbamoyl phosphate synthase-l | 2e-08 | |
| TIGR01205 | 315 | TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine l | 8e-08 | |
| pfam08442 | 202 | pfam08442, ATP-grasp_2, ATP-grasp domain | 1e-07 | |
| COG0045 | 387 | COG0045, SucC, Succinyl-CoA synthetase, beta subun | 2e-07 | |
| TIGR01369 | 1050 | TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth | 4e-07 | |
| PRK01966 | 333 | PRK01966, ddl, D-alanyl-alanine synthetase A; Revi | 4e-07 | |
| TIGR01235 | 1143 | TIGR01235, pyruv_carbox, pyruvate carboxylase | 1e-06 | |
| TIGR01016 | 386 | TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be | 1e-06 | |
| TIGR00768 | 277 | TIGR00768, rimK_fam, alpha-L-glutamate ligases, Ri | 1e-06 | |
| COG4770 | 645 | COG4770, COG4770, Acetyl/propionyl-CoA carboxylase | 1e-06 | |
| COG1181 | 317 | COG1181, DdlA, D-alanine-D-alanine ligase and rela | 2e-06 | |
| TIGR01161 | 352 | TIGR01161, purK, phosphoribosylaminoimidazole carb | 3e-06 | |
| PRK12999 | 1146 | PRK12999, PRK12999, pyruvate carboxylase; Reviewed | 3e-06 | |
| COG0026 | 375 | COG0026, PurK, Phosphoribosylaminoimidazole carbox | 5e-06 | |
| PRK06019 | 372 | PRK06019, PRK06019, phosphoribosylaminoimidazole c | 6e-06 | |
| PRK12815 | 1068 | PRK12815, carB, carbamoyl phosphate synthase large | 7e-06 | |
| PRK00696 | 388 | PRK00696, sucC, succinyl-CoA synthetase subunit be | 2e-05 | |
| PRK08463 | 478 | PRK08463, PRK08463, acetyl-CoA carboxylase subunit | 2e-05 | |
| pfam02222 | 171 | pfam02222, ATP-grasp, ATP-grasp domain | 2e-05 | |
| PRK02471 | 752 | PRK02471, PRK02471, bifunctional glutamate--cystei | 3e-05 | |
| COG1038 | 1149 | COG1038, PycA, Pyruvate carboxylase [Energy produc | 3e-05 | |
| PRK14016 | 727 | PRK14016, PRK14016, cyanophycin synthetase; Provis | 4e-05 | |
| TIGR01142 | 380 | TIGR01142, purT, phosphoribosylglycinamide formylt | 9e-05 | |
| PRK06111 | 450 | PRK06111, PRK06111, acetyl-CoA carboxylase biotin | 1e-04 | |
| TIGR00514 | 449 | TIGR00514, accC, acetyl-CoA carboxylase, biotin ca | 1e-04 | |
| pfam07478 | 201 | pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-t | 3e-04 | |
| TIGR02144 | 280 | TIGR02144, LysX_arch, Lysine biosynthesis enzyme L | 0.001 | |
| COG0027 | 394 | COG0027, PurT, Formate-dependent phosphoribosylgly | 0.003 |
| >gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Score = 868 bits (2244), Expect = 0.0
Identities = 361/434 (83%), Positives = 403/434 (92%)
Query: 86 LVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRK 145
LVIGGGGREHALCYAL+RS SCDAVFCAPGNAGI+ SGDATC+PDLD+ D AVISFCRK
Sbjct: 1 LVIGGGGREHALCYALQRSPSCDAVFCAPGNAGIATSGDATCVPDLDISDSAAVISFCRK 60
Query: 146 WSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY 205
W VGLVVVGPEAPLV+GLA+ LVKAGIPTFGPS+EAAALEGSKNFMK+LCDKY IPTAKY
Sbjct: 61 WGVGLVVVGPEAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKY 120
Query: 206 KTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGC 265
+TFTDP AAK+YI+E+GAPIVVKADGLAAGKGV+VAMTLEEAYEAVDSML+K AFGSAG
Sbjct: 121 ETFTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGS 180
Query: 266 RVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKE 325
V++EEFL+GEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLT E
Sbjct: 181 EVVVEEFLDGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPE 240
Query: 326 LQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385
L+S VME+II PTVKGM+AEGCKFVGVLYAGLMIEKKSGLPKL+EYNVRFGDPECQVLM+
Sbjct: 241 LESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMM 300
Query: 386 RLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVA 445
RLESDLA+VLLAAC+GEL+GV+L WSP SAMVVVMAS GYPGSY+KG+ I+NL+EAE VA
Sbjct: 301 RLESDLAQVLLAACKGELSGVSLTWSPDSAMVVVMASNGYPGSYKKGTVIKNLDEAEAVA 360
Query: 446 PSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDI 505
P VK+FHAGTALD+DGN +A GGRVLGVTAKGKD+ EA+ RAY AV++I+WPGGF+RRDI
Sbjct: 361 PGVKVFHAGTALDSDGNVVAAGGRVLGVTAKGKDIAEARARAYDAVDQIDWPGGFFRRDI 420
Query: 506 GWRALPQKQFATRE 519
GWRA+ + Q A +
Sbjct: 421 GWRAVARLQVANKR 434
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Length = 434 |
| >gnl|CDD|234856 PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Score = 720 bits (1862), Expect = 0.0
Identities = 259/426 (60%), Positives = 316/426 (74%), Gaps = 10/426 (2%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLVIG GGREHAL + L +S + V+ APGNAG + A + +DV D +A+++F +
Sbjct: 3 VLVIGSGGREHALAWKLAQSPLVEKVYVAPGNAGTAL--LAENVV-IDVTDIEALVAFAK 59
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ + L VVGPEAPLV+G+ + AG+P FGP+ AA LEGSK F K+ +YGIPTA
Sbjct: 60 EEGIDLTVVGPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAA 119
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+TFTD A Y+ E+GAPIVVKADGLAAGKGV+VAMTLEEA AVD ML N FG AG
Sbjct: 120 YETFTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAG 179
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
RV+IEEFL+GEEASFFA VDGEN +PL +AQDHKR GDGDTGPNTGGMGAYSPAPV+T+
Sbjct: 180 ARVVIEEFLDGEEASFFAFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTE 239
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E+ VME II PTVKGM+AEG + GVLYAGLMI K PK+IE+N RFGDPE QV++
Sbjct: 240 EVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG--PKVIEFNARFGDPETQVVL 297
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
RL+SDL E+LLAA G+L V L W +A+ VV+A+KGYPG Y KG I LE A+
Sbjct: 298 PRLKSDLVELLLAAADGKLDEVELEWDDRAAVGVVLAAKGYPGDYRKGDVITGLEAAD-- 355
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
+ K+FHAGT L+ DG + GGRVL VTA G +EEAQ RAY A+++I++ GGFYRRD
Sbjct: 356 --ADKVFHAGTKLE-DGKLVTNGGRVLCVTALGDTLEEAQKRAYAALDKIDFDGGFYRRD 412
Query: 505 IGWRAL 510
IG+RAL
Sbjct: 413 IGYRAL 418
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Length = 420 |
| >gnl|CDD|223229 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 638 bits (1648), Expect = 0.0
Identities = 250/431 (58%), Positives = 307/431 (71%), Gaps = 7/431 (1%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLVIG GGREHAL + L +S V+ APGN G + +A + D +A+++F +
Sbjct: 3 VLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTA--LEAYLVNIEIDTDHEALVAFAK 60
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ +V LVVVGPEAPLV+G+ + L AGIP FGP+ AA LEGSK F K+ KYGIPTA+
Sbjct: 61 EKNVDLVVVGPEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAE 120
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+ FTDP AK YI E+GAPIVVKADGLAAGKGVIVAMTLEEA AVD ML NAFGSAG
Sbjct: 121 YEVFTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAG 180
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
RV+IEEFL+GEE S A VDG+ IP+ +AQDHKR DGDTGPNTGGMGAYSPAP +T
Sbjct: 181 ARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITD 240
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E+ +E I+ PTV+GM+ EG F GVLYAGLM+ PK+IE+N RFGDPE QV++
Sbjct: 241 EVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG--PKVIEFNARFGDPETQVVL 298
Query: 385 VRLESDLAEVLLAACRGELTGVT-LNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQ 443
LESDL E+LLAA G+L V L W G+A+ VV+A++GYPG EKG I EEAE
Sbjct: 299 PLLESDLVELLLAAVDGKLDEVEILFWDKGAAVGVVLAAEGYPGDPEKGDVITGDEEAE- 357
Query: 444 VAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRR 503
K+FHAG LD G + +GGRVL V G +EEAQ++AY A+E+I++ G FYR+
Sbjct: 358 -EEGAKVFHAGVKLDDGGQLVTSGGRVLAVVGTGDTLEEAQEKAYEALEKIHFDGLFYRK 416
Query: 504 DIGWRALPQKQ 514
DIG RAL +K+
Sbjct: 417 DIGSRALERKR 427
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Length = 428 |
| >gnl|CDD|233164 TIGR00877, purD, phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Score = 565 bits (1458), Expect = 0.0
Identities = 239/426 (56%), Positives = 300/426 (70%), Gaps = 7/426 (1%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLVIG GGREHAL + L +S V+ APGNAG + + +++ D +A++ F +
Sbjct: 3 VLVIGNGGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNV-AIEITDIEALVEFAK 61
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
K + L ++GPEAPLV GL + L +AGIP FGP+ EAA LEGSK F K+ +YGIPTA+
Sbjct: 62 KKKIDLAIIGPEAPLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAE 121
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+ FTDP AK YIQE+GAPIVVKADGLAAGKGVIVA T EEA +AV+ +L + FG AG
Sbjct: 122 YEVFTDPEEAKSYIQEKGAPIVVKADGLAAGKGVIVAKTNEEAIKAVEDILEQK-FGDAG 180
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
RV+IEEFL+GEE S A VDG+ IP+ AQDHKR +GD GPNTGGMGAYSPAPV T+
Sbjct: 181 ERVVIEEFLDGEEFSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTE 240
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E++ + E I+ PTVK M EG + GVLYAGLM+ K+ PK++E+N RFGDPE Q ++
Sbjct: 241 EVERRIAEEIVEPTVKAMRKEGTPYKGVLYAGLMLTKEG--PKVLEFNCRFGDPETQAVL 298
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
L+SDL EV LAA G+L V L + +A+ VV+AS+GYP Y KG I AE
Sbjct: 299 PLLKSDLLEVCLAAVEGKLDEVELRFDNRAAVTVVLASEGYPEDYRKGDPITGEPLAE-- 356
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
A VK+FHAGT D +G + GGRVL VTA GK +EEA++RAY AVE I + G FYR+D
Sbjct: 357 AEGVKVFHAGTKAD-NGKLVTNGGRVLAVTALGKTLEEARERAYEAVEYIKFEGMFYRKD 415
Query: 505 IGWRAL 510
IG+RAL
Sbjct: 416 IGFRAL 421
|
Alternate name: glycinamide ribonucleotide synthetase (GARS). This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 422 |
| >gnl|CDD|184327 PRK13789, PRK13789, phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Score = 406 bits (1044), Expect = e-138
Identities = 202/427 (47%), Positives = 275/427 (64%), Gaps = 8/427 (1%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPD-LDVLDGDAVISFC 143
VL+IG GGRE A+ +AL++S+ + PGN G + D D +LD +V SF
Sbjct: 7 VLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPD--DELLPADSFSILDKSSVQSFL 64
Query: 144 RKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTA 203
+ L+VVGPE PLV+G A+ + GIP FGP S A +EGSK+F K+L + IPTA
Sbjct: 65 KSNPFDLIVVGPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTA 124
Query: 204 KYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSA 263
YKTFT+ +++ Y++ E PIV+KADGLAAGKGV VA + A A+ + FG +
Sbjct: 125 SYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQS 184
Query: 264 GCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLT 323
G +V+IEEF+EG+EAS FA+ DG++ L +AQDHKR DGD GPNTGGMGAY PAPV+T
Sbjct: 185 GNQVVIEEFMEGQEASIFAISDGDSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVIT 244
Query: 324 KELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVL 383
+ + V E I P +G + G+LYAGLMI + G PK++E+N RFGDPE Q +
Sbjct: 245 EAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPE-GEPKVVEFNCRFGDPETQCV 303
Query: 384 MVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQ 443
+ L+ DL E+L AA G++ V L G+A VVV+A++GYP SYEK L E
Sbjct: 304 LAMLDGDLLELLYAASTGKIKVVNLKLKQGAAAVVVLAAQGYPDSYEKNIP---LNLPET 360
Query: 444 VAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRR 503
+V +FHAGT DG ++GGR+LG+ A+GKD++++ D+AY +E+I P FYR+
Sbjct: 361 SGQNVVLFHAGTKKK-DGKVFSSGGRILGIVAQGKDLKDSVDQAYSFLEKIQAPKTFYRK 419
Query: 504 DIGWRAL 510
DIG RAL
Sbjct: 420 DIGRRAL 426
|
Length = 426 |
| >gnl|CDD|237507 PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Score = 351 bits (903), Expect = e-118
Identities = 165/385 (42%), Positives = 224/385 (58%), Gaps = 16/385 (4%)
Query: 130 DLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKN 189
++ D A++ F ++ +V VV+GPE PL+ GLA+ L G FGP+ +AA +EGSK
Sbjct: 10 EISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKL 69
Query: 190 FMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYE 249
F K + +KY IPTA YK A YI+ P+VVK DGLAAGKGVI+A T+E A
Sbjct: 70 FAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARS 129
Query: 250 AVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLES-AQDHKRVGDGDTGP 308
A++ M G V+ E FLEGEE S V+G+ A+P + AQDHKR D D GP
Sbjct: 130 AIEIMYGDEEEG----TVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGP 185
Query: 309 NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKL 368
NTGGMGAY P P ++ ++ + E+I P K M EG +F GVLY G ++ K PK+
Sbjct: 186 NTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG--PKV 243
Query: 369 IEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGS 428
IE+N RFGDPE QVL+ R+ESDL + ++ G+ W S + V++ASKGYP +
Sbjct: 244 IEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGK--RTEFKWKNESIVGVMLASKGYPDA 301
Query: 429 YEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAY 488
YEKG ++ + E F +G D F+ +GGRV+ KG +V++AQ AY
Sbjct: 302 YEKGHKVSGFDLNENY------FVSGLKKQGD-TFVTSGGRVILAIGKGDNVQDAQRDAY 354
Query: 489 LAVEEINWPGGFYRRDIGWRALPQK 513
V +I FYR DI +AL K
Sbjct: 355 EKVSQIQSDHLFYRHDIANKALQLK 379
|
Length = 379 |
| >gnl|CDD|216282 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain | Back alignment and domain information |
|---|
Score = 326 bits (838), Expect = e-110
Identities = 124/195 (63%), Positives = 147/195 (75%), Gaps = 2/195 (1%)
Query: 186 GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLE 245
GSK+F K+ ++GIPTA+Y+TFTDP AK YI+E G P VVKADGLAAGKGVIVAM E
Sbjct: 1 GSKSFAKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAMDNE 60
Query: 246 EAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGD 305
EA +AVD +L + FG AG V+IEEFLEGEE S A VDG+ PL AQDHKR+G+GD
Sbjct: 61 EAIKAVDEILEQKKFGEAGEPVVIEEFLEGEEVSVLAFVDGKTVKPLPPAQDHKRLGEGD 120
Query: 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGL 365
TGPNTGGMGAYSPAPVLT EL + E+I+ PTV G+ EG + GVLYAGLM+ K
Sbjct: 121 TGPNTGGMGAYSPAPVLTPELLERIKETIVEPTVDGLRKEGIPYKGVLYAGLMLTKDG-- 178
Query: 366 PKLIEYNVRFGDPEC 380
PK++E+N RFGDPE
Sbjct: 179 PKVLEFNCRFGDPET 193
|
Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786). Length = 193 |
| >gnl|CDD|180256 PRK05784, PRK05784, phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 1e-65
Identities = 143/447 (31%), Positives = 220/447 (49%), Gaps = 32/447 (7%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPG--NAGISNSGDATC--IPDLDVLDGDAVI 140
VL++G G REHAL AL++S V+ N GI++ AT ++ + V
Sbjct: 3 VLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIGNINSPEEVK 62
Query: 141 SFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGI 200
++ + LVV+GPE PL +G+A+ L + G P FG SS+ A +E SK + + L KY I
Sbjct: 63 KVAKEVNPDLVVIGPEEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSI 122
Query: 201 P-TAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAY--EAVDSMLLK 257
P +YK F D A ++I E G + +K A GKGV V L +AY + L K
Sbjct: 123 PGRLRYKVFYDVEEAAKFI-EYGGSVAIKPARQAGGKGVKVIADL-QAYLSQEKREALTK 180
Query: 258 NA---------FGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGP 308
+ + ++++EE ++G E + L DGE IPL AQD+ + GP
Sbjct: 181 SVNDIKEGSAYYKDVEPKILVEEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIGP 240
Query: 309 NTGGMGAYSPA----PVLTKELQSVVMESIILPTVKGMSAEGC-KFVGVLYAGLMIEKKS 363
TGGMG+ S P + +E +E I+ T+ + E ++VGV+ +M+ +
Sbjct: 241 ETGGMGSISGPGELLPFINEEEYEEAVE-IVKRTIDAIYKETGERYVGVISGQMMLTELW 299
Query: 364 GLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASK 423
G P +IEY RFGDPE ++ R+ESD E+ A G+L+ + ++ ++V +A
Sbjct: 300 G-PTVIEYYSRFGDPEASNIIPRIESDFGELFELAATGKLSKAKIKFNEEPSVVKAIAPL 358
Query: 424 GYPGSYE--KGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVE 481
GYP S + G I ++ + +F L G I G R L + A GKD E
Sbjct: 359 GYPLSRDLASGRRI-VVDLDKIKEEGCLVFFGSVEL-EGGQLITKGSRALEIVAIGKDFE 416
Query: 482 EAQDRAYLAVEEI--NWPGGFYRRDIG 506
EA ++ + + + YR DIG
Sbjct: 417 EAYEKLERCISYVSSDT-KLIYRTDIG 442
|
Length = 486 |
| >gnl|CDD|102357 PRK06395, PRK06395, phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 3e-54
Identities = 137/444 (30%), Positives = 215/444 (48%), Gaps = 36/444 (8%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
V+++G GGRE A+ A+KRS + +F G+ S + D D D + F
Sbjct: 5 VMLVGSGGREDAIARAIKRSGA--ILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFAL 62
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIP--T 202
K +V +V VGP+ L + L N L+K GI P+ EAA +E SK FM+ L +++ IP
Sbjct: 63 KNNVDIVFVGPDPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNI 122
Query: 203 AKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVA----MTLEEAYEAVDSMLLKN 258
F++ +AA+ YI + VK GL GKGV V +++EA +L ++
Sbjct: 123 NFNACFSEKDAARDYI-TSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRD 181
Query: 259 AFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSP 318
V+IE+ + GEE S A DG++ + QD+KR +GD GPNTGGMG+ S
Sbjct: 182 G------VVLIEKKMTGEEFSLQAFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISD 235
Query: 319 A----PVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVR 374
P L+K+ + I+ ++ M E F G++Y M + +G+ K+IE N R
Sbjct: 236 RDFSLPFLSKDAPERA-KHILNDIIRAMKDENNPFKGIMYGQFM-DTPNGV-KVIEINAR 292
Query: 375 FGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSE 434
F DPE ++ L+SD E L G L G + + ++ GY + G
Sbjct: 293 FADPEGINVLYLLKSDFVETLHQIYSGNLNGSIKFERKATVLKYIVPP-GYGENPSPG-R 350
Query: 435 IQNLEEAEQVAPSVKIFHA---GTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAV 491
I+ + + +++A GT D +G R L + AKG + EA ++ +
Sbjct: 351 IKIDKTIFDS--NSDVYYASVSGTLNDVK----TSGSRSLAIIAKGDSIPEASEKVDSDL 404
Query: 492 EEINWPGGFY-RRDIGWRALPQKQ 514
++ G +Y RRDIG +K+
Sbjct: 405 NAVH--GSYYVRRDIGDSDFIRKK 426
|
Length = 435 |
| >gnl|CDD|217251 pfam02844, GARS_N, Phosphoribosylglycinamide synthetase, N domain | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-44
Identities = 49/101 (48%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLV+G GGREHAL + L +S + V+ APGN G + A + +D D +A+ F +
Sbjct: 3 VLVVGSGGREHALAWKLAQSPRVEKVYVAPGNPGTAQ--LAKNVNVIDETDFEALADFAK 60
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALE 185
+ ++ LVVVGPEAPLV+G+ + L AGIP FGPS AA LE
Sbjct: 61 EENIDLVVVGPEAPLVAGIVDALRAAGIPVFGPSKAAARLE 101
|
Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289). Length = 101 |
| >gnl|CDD|217250 pfam02843, GARS_C, Phosphoribosylglycinamide synthetase, C domain | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-39
Identities = 54/97 (55%), Positives = 70/97 (72%), Gaps = 5/97 (5%)
Query: 414 SAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGV 473
+A+ VV+ASKGYP SYEKG EI LEE V +FHAGT L+ DG + GGRVL V
Sbjct: 1 AAVGVVLASKGYPESYEKGIEITGLEED----EGVLVFHAGTKLE-DGKLVTNGGRVLAV 55
Query: 474 TAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
A G +EEA+++AY A+E+I++PG FYR+DIG +AL
Sbjct: 56 VALGDTLEEAREKAYEALEKIDFPGLFYRKDIGTKAL 92
|
Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02787). Length = 92 |
| >gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 4e-15
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 13/163 (7%)
Query: 125 ATCIPDLDV----LDGDAVISFCRKWSVGLVVVGPE-APLVSGLANKLVKAGIPTF-GPS 178
A CI L+ DA+I+ + + G + A +AG+ TF GPS
Sbjct: 48 AVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGL-TFIGPS 106
Query: 179 SEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVVKADGLAAGK 236
+EA G K + L K G+P D A +E G P++VKA G+
Sbjct: 107 AEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGR 166
Query: 237 GVIVAMTLEEAYEAVDSML--LKNAFGSAGCRVIIEEFLEGEE 277
G+ V EE A ++ + AFG+ RV +E+F+EG
Sbjct: 167 GMRVVRNEEELEAAFEAARGEAEAAFGNP--RVYLEKFIEGPR 207
|
Length = 449 |
| >gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-14
Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 20/192 (10%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247
K M+ L G+P + D +E G P+V+K A GV + E
Sbjct: 5 KALMRELLRAAGLPVPPFFLVDDEEDLDAAAEEIGFPVVLKPRDGAGSLGVFRVDSAAEL 64
Query: 248 YEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTG 307
A+ + A ++EE+++G+E LVD + L ++
Sbjct: 65 EAALAA---LAAEVEDTREYLVEEYIDGDEYHVDGLVDDGELVFLGVSR--YLGPPPPDF 119
Query: 308 PNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIE---KKSG 364
+G+ SP L + E ++ K +G+ +E G
Sbjct: 120 SEGVELGSVSP---GEDPLPEALRE---------LAERVLKALGLRNGVFHLEFFLTPDG 167
Query: 365 LPKLIEYNVRFG 376
P L+E N R G
Sbjct: 168 RPVLLEINPRPG 179
|
This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 183 |
| >gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 162 GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTFTDPNAAKQYIQ 219
A KAGI GPSS+ GSK K L K G+P + D AK+ +
Sbjct: 90 EFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAE 149
Query: 220 EEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSM--LLKNAFGSAGCRVIIEEFLE 274
E G P+++KA G G+ V + EE +A++S + ++AFG + V IE++LE
Sbjct: 150 EIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDS--TVFIEKYLE 204
|
Length = 499 |
| >gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 19/209 (9%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCA---PGNAGISNSGDATCIPDLDVLD-GDAVI 140
+LV G R L ALK+S V A + + +P + + D ++
Sbjct: 4 ILVTSAGRR-VQLVKALKKSLLKGRVIGADISELAPALYFADKFYVVPKVTDPNYIDRLL 62
Query: 141 SFCRKWSVGLVVVG--PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKY 198
C+K + L++ PE PL++ ++ + G+ S E + K +
Sbjct: 63 DICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKEN 122
Query: 199 GIPTAKYKTFTDPNAAKQYIQEE--GAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLL 256
GIPT K K + + P+ VK +A GV EE ++ +L
Sbjct: 123 GIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEE----LEFLLE 178
Query: 257 KNAFGSAGCRVIIEEFLEGEEASFFALVD 285
+II+EF+EG+E + L D
Sbjct: 179 YVPN------LIIQEFIEGQEYTVDVLCD 201
|
Length = 326 |
| >gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 8e-08
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAA------KQYIQEEGA 223
GIP G A+AL K K L G+PT Y T A+ +Q + G
Sbjct: 88 MGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPLGF 147
Query: 224 PIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
P++VK + GV + EE A+D AF V++E+F++G E
Sbjct: 148 PVIVKPAREGSSVGVSKVKSEEELQAALD-----EAFEYDE-EVLVEQFIKGRE 195
|
This model describes D-Ala--D-Ala ligase, an enzyme that makes a required precursor of the bacterial cell wall. It also describes some closely related proteins responsible for resistance to glycopeptide antibiotics such as vancomycin. The mechanism of glyopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). The seed alignment contains only chromosomally encoded D-ala--D-ala ligases, but a number of antibiotic resistance proteins score above the trusted cutoff of this model [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 315 |
| >gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGLAAGK----GVIVAMTLEE 246
K L KYG+P + + P A++ ++ G VVKA LA G+ GV +A + EE
Sbjct: 8 KELLAKYGVPVPRGEVAFSPEEAEEAAKKLGGKVWVVKAQVLAGGRGKAGGVKLAKSPEE 67
Query: 247 AYEAVDSMLLKN----AFGSAGC---RVIIEEFLEGEEASFFALV 284
A EA ML KN G G +V++EE ++ + ++V
Sbjct: 68 AKEAAKEMLGKNLVTKQTGPEGKPVNKVLVEEAVDIAREYYLSIV 112
|
Length = 202 |
| >gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA-PIVVKADGLAAGKG----VIVAMTLEE 246
K L KYGIP T P A++ +E G P+VVKA A G+G V +A + EE
Sbjct: 9 KELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEE 68
Query: 247 AYEAVDSMLLKNAF-GSAGC---RVIIEEFLEGEEASFF--ALVDGENAIPL 292
A EA + +L KN G +V++EE ++ + ++ ++D + P+
Sbjct: 69 AKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPV 120
|
Length = 387 |
| >gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 65/239 (27%), Positives = 101/239 (42%), Gaps = 43/239 (17%)
Query: 149 GLVV-VGPEAPLVSGLANKLVKAGIPTFGPSSEAA-ALEGSKNFMKNLCDKYGIPTAKYK 206
G++V G + PL LA L +AG+P G S E+ E + F + L D+ GIP K+K
Sbjct: 632 GVIVQFGGQTPL--NLAKALEEAGVPILGTSPESIDRAEDREKFSE-LLDELGIPQPKWK 688
Query: 207 TFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFG-SAGC 265
T T A ++ E G P++V+ + G+ + + EE L+ A S
Sbjct: 689 TATSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRR-----YLEEAVEVSPEH 743
Query: 266 RVIIEEFLE-GEEASFFALVDGENA-IP-----LESAQDHKRVGDGDTGPNTGGMGAYSP 318
V+I+++LE E A+ DGE IP +E A G ++G P
Sbjct: 744 PVLIDKYLEDAVEVDVDAVSDGEEVLIPGIMEHIEEA-----------GVHSGDSTCVLP 792
Query: 319 APVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLM---IEKKSGLPKLIEYNVR 374
L+ E+ ++ I+ K ++ GLM K G +IE N R
Sbjct: 793 PQTLSAEIVD-RIKDIVRKIAKELN----------VKGLMNIQFAVKDGEVYVIEVNPR 840
|
Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050 |
| >gnl|CDD|234993 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 4e-07
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE----GAPI 225
GIP G A+AL K K L GIP A Y T + + + E G P+
Sbjct: 106 LGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKLGLPV 165
Query: 226 VVKADGLA-AGK--GVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
VK A G G+ EE A+D AF +V++E+ ++G E
Sbjct: 166 FVKP---ANLGSSVGISKVKNEEELAAALD-----LAFEYDR-KVLVEQGIKGRE 211
|
Length = 333 |
| >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 19/152 (12%)
Query: 134 LDGDAVISFCRKWSV-------GLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEG 186
L D +I + V G + E A+ KAGI GP +E G
Sbjct: 61 LSIDEIIRVAKLNGVDAIHPGYGFLSENSE------FADACNKAGIIFIGPKAEVMDQLG 114
Query: 187 SKNFMKNLCDKYGIPT--AKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTL 244
K +NL K G+P + G P+++KA G+G+ V +
Sbjct: 115 DKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSE 174
Query: 245 EEAYEAVD--SMLLKNAFGSAGCRVIIEEFLE 274
+ +A K AFG+ +E+ +E
Sbjct: 175 ADVADAFQRAKSEAKAAFGNDEV--YVEKLIE 204
|
This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143 |
| >gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA-PIVVKADGLAAGK----GVIVAMTLEE 246
K + KYGIP + T A++ + GA P+VVKA A G+ GV VA + EE
Sbjct: 9 KQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEE 68
Query: 247 AYEAVDSML---LKNAFGSAGC----RVIIEEFLEGEEASFFALV 284
A A + +L L +++IEE + ++ + ++V
Sbjct: 69 ARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIV 113
|
This model is designated subfamily because it does not discriminate the ADP-forming enzyme ((EC 6.2.1.5) from the GDP_forming (EC 6.2.1.4) enzyme. The N-terminal half is described by the CoA-ligases model (pfam00549). The C-terminal half is described by the ATP-grasp model (pfam02222). This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G [Energy metabolism, TCA cycle]. Length = 386 |
| >gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 28/236 (11%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG 222
+A L G+P S +A G K L K G+P + P A + I+E G
Sbjct: 65 VARYLESLGVPVINSS-DAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIG 123
Query: 223 APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL-EGEEASFF 281
P+V+K + G+ V +A + A + ++E++ +
Sbjct: 124 FPVVLKPVFGSWGRLVSLA---RDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIR 180
Query: 282 ALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKG 341
V G+ I A + R+ G N G P P LT+E ++
Sbjct: 181 VFVVGDEVI----AAIY-RITSGHWRTNLARGGKAEPCP-LTEE-------------IEE 221
Query: 342 MSAEGCKFVGVLYAGL-MIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLL 396
++ + K +G+ G+ ++E + + E N +PE + + ++A LL
Sbjct: 222 LAIKAAKALGLDVVGIDLLESEDRGLLVNEVN---PNPEFKNSVKTTGVNIAGKLL 274
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). Length = 277 |
| >gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 134 LDGDAVISFCRKWSVGLVVVGP------EAPLVSGLANKLVKAGIPTFGPSSEAAALEGS 187
LD D +I R+ G + P E A + AG+ GPS+ A G
Sbjct: 61 LDIDKIIDAARR--TGAQAIHPGYGFLSENA---DFAQAVEDAGLVFIGPSAGAIRAMGD 115
Query: 188 KNFMKNLCDKYGIPTAK-YK-TFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLE 245
K K L + G+PT Y D +E G P+++KA GKG+ V T E
Sbjct: 116 KIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPE 175
Query: 246 EAYEAVDSMLL--KNAFGSAGCRVIIEEFLE 274
E EA++S K +FG RV IE++L+
Sbjct: 176 EFAEALESARREAKASFGDD--RVFIEKYLD 204
|
Length = 645 |
| >gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 10/112 (8%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAA----KQYIQEEGAPI 225
GIP G A+A K K L G+P A Y T + ++ + G P+
Sbjct: 86 LGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPL 145
Query: 226 VVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
VK + G + A++ + V+ E+ + G E
Sbjct: 146 FVKPAREGSSVGRSPVNVEGDLQSALELAFKYDR------DVLREQGITGRE 191
|
Length = 317 |
| >gnl|CDD|233295 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 166 KLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPI 225
KL G+ F PS +A A+ + K K G+P + D +QE G P+
Sbjct: 78 KLEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELGFPV 136
Query: 226 VVKADGLA-AGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
V+KA G+G + +A G C I+EEF
Sbjct: 137 VLKARTGGYDGRGQYRIRNEADLPQAAK------ELGDREC--IVEEF 176
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 352 |
| >gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 3e-06
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 163 LANKLVKAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTFTDPNAAKQYIQ 219
A +AGI TF GP++E L G K +N K G+P D A ++ +
Sbjct: 95 FARACAEAGI-TFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAE 153
Query: 220 EEGAPIVVKADGLAAGKGVIVAMT---LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
E G PI++KA G+G+ + + LEEA+E K AFG+ V +E+++E
Sbjct: 154 EIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKRE-AKAAFGND--EVYLEKYVE 208
|
Length = 1146 |
| >gnl|CDD|223105 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA-----DG 231
PS +A + + K DK G+P A ++ + G P V+K D
Sbjct: 89 PSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGYD- 147
Query: 232 LAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF--LEGE 276
GKG + + + ++EEF E E
Sbjct: 148 ---GKGQWRIRSDADLELRAAGLAEGGVP-------VLEEFVPFERE 184
|
Length = 375 |
| >gnl|CDD|235674 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 6e-06
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 19/107 (17%)
Query: 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA-----DG 231
P +A A+ + K DK GIP A + + + + G P V+K D
Sbjct: 90 PGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPAVLKTRRGGYD- 148
Query: 232 LAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF--LEGE 276
GKG V + E+ A GS C I+EEF E E
Sbjct: 149 ---GKGQWVIRSAEDLEAAWA------LLGSVPC--ILEEFVPFERE 184
|
Length = 372 |
| >gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 39/183 (21%)
Query: 160 VSGLANKLVKAGIPTFGPSSEAA-ALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYI 218
LA L +AG+ G S + LE F L D+ G+P T TD A +
Sbjct: 643 AINLAKGLEEAGLTILGTSPDTIDRLEDRDRF-YQLLDELGLPHVPGLTATDEEEAFAFA 701
Query: 219 QEEGAPIVVKADGLAAGKGVIV-----AMT--LEEAYEAVDSMLLKNAFGSAGCRVIIEE 271
+ G P++++ + G+G+ V A+ L E + +L I++
Sbjct: 702 KRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLYPIL-------------IDQ 748
Query: 272 FLEGEEASFFALVDGENA-IP-----LESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKE 325
F++G+E A+ DGE+ IP +E A H GD+ A P L++E
Sbjct: 749 FIDGKEYEVDAISDGEDVTIPGIIEHIEQAGVHS----GDS-------IAVLPPQSLSEE 797
Query: 326 LQS 328
Q
Sbjct: 798 QQE 800
|
Length = 1068 |
| >gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 2e-05
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQE-EGAPIVVKADGLAAGK----GVIVAMTLEE 246
K L KYG+P + T P A + +E G VVKA A G+ GV +A + EE
Sbjct: 9 KELFAKYGVPVPRGIVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEE 68
Query: 247 AYEAVDSML 255
A E +L
Sbjct: 69 AREFAKQIL 77
|
Length = 388 |
| >gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 164 ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIP----TAKYKTFTDPNAAKQYIQ 219
A + AGI GP SE G+KN + L K GIP T K + + K + +
Sbjct: 91 AKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSES-MEEIKIFAR 149
Query: 220 EEGAPIVVKADGLAAGKGVIVAMT---LEEAYEA 250
+ G P+++KA G G+G+ V LE A+E+
Sbjct: 150 KIGYPVILKASGGGGGRGIRVVHKEEDLENAFES 183
|
Length = 478 |
| >gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 196 DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA-AGKGVIVAMTLEEAYEAVDSM 254
K G+PT ++ + QE G P V+KA GKG V + + +A +
Sbjct: 2 QKLGLPTPRFAAAESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQAWEE- 60
Query: 255 LLKNAFGSAGCRVIIEEF 272
G VI+EEF
Sbjct: 61 -------LGGGPVIVEEF 71
|
This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 171 |
| >gnl|CDD|179427 PRK02471, PRK02471, bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQE-EGAPIVVKADGLAAGKGVIV--AMTLEEAY 248
K + + G P FT A IVVK G G+ + E Y
Sbjct: 493 KKILAEAGFPVPAGDEFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDY 552
Query: 249 EAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE 287
E L+ AF V++EEF+ G E FF L DG+
Sbjct: 553 EKA----LEIAF-REDSSVLVEEFIVGTEYRFFVL-DGK 585
|
Length = 752 |
| >gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTFTDPNAAKQYIQE 220
A +AGI GP E + G K +N K G+P A ++ +E
Sbjct: 97 FARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEE 156
Query: 221 EGAPIVVKADGLAAGKGVIVAM---TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG 275
G P+++KA G+G+ V L EA+E S K AFG+ V +E+ +E
Sbjct: 157 YGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSE-AKAAFGND--EVYVEKLVEN 211
|
Length = 1149 |
| >gnl|CDD|237586 PRK14016, PRK14016, cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-05
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA-DGLAAGKGVIVAMT--- 243
K K L G+P + + T A + +E G P+VVK DG G+GV V +T
Sbjct: 215 KELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIGYPVVVKPLDG-NHGRGVTVNITTRE 273
Query: 244 -LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
+E AY + S VI+E ++ G++
Sbjct: 274 EIEAAYAVA------SKESSD---VIVERYIPGKD 299
|
Length = 727 |
| >gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 96/378 (25%), Positives = 156/378 (41%), Gaps = 60/378 (15%)
Query: 132 DVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFM 191
++LDGDA+ + + +V EA L +L K G P++ A L ++ +
Sbjct: 47 NMLDGDALRAVIEREKPDYIVPEIEAIATDALF-ELEKEGY-FVVPNARATKLTMNREGI 104
Query: 192 KNL-CDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMT---LEEA 247
+ L ++ G+PT++Y + ++ +++ G P VVK ++GKG V +E+A
Sbjct: 105 RRLAAEELGLPTSRYMFADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKA 164
Query: 248 YEAVDSMLLKNAFGSAGCRVIIEEFLEGE-EASFFAL--VDGENAIPLESAQDHKRVGDG 304
+E + A G AG RVI+EEF++ + E + + VDG A R DG
Sbjct: 165 WEYA----QEGARGGAG-RVIVEEFIDFDYEITLLTVRHVDGNTTFC---APIGHRQIDG 216
Query: 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSG 364
D ++ P + K L+ + I + G GV L ++
Sbjct: 217 DY------HESWQPQEMSEKALEEA--QRIAKRITDALGGYG--LFGV---ELFVKGD-- 261
Query: 365 LPKLI--EYNVRFGDPECQVLMVRLES-DLAEVLL--AACRGELTGVTLNWSPGSAMVVV 419
++I E + R D MV L S L+E L A G P ++ V+
Sbjct: 262 --EVIFSEVSPRPHDTG----MVTLISQGLSEFALHVRAILGLPIPGIPQLGPAASAVIK 315
Query: 420 MASKGYPGSYEKGSEIQNLEEAEQVAPS-VKIFHAGTALDADGNFIATGGRVLGVT-AKG 477
GY ++ LE+A V + V++F G A GR LGV A
Sbjct: 316 AKVTGYSPAFR------GLEKALSVPNTQVRLF---------GKPEAYVGRRLGVALATA 360
Query: 478 KDVEEAQDRAYLAVEEIN 495
K VE A++RA +
Sbjct: 361 KSVEAARERAEEVAHAVE 378
|
This enzyme is an alternative to PurN (TIGR00639) [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 380 |
| >gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 161 SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT--DPNAAKQYI 218
+ A + + GI GPS++ A GSK + G+P T D A
Sbjct: 89 ASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIA 148
Query: 219 QEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLE 274
++ G P+++KA G G+ + T +E +A +S + N FG+ + IE+++E
Sbjct: 149 RQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNG--EMYIEKYIE 204
|
Length = 450 |
| >gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 36/217 (16%)
Query: 171 GIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTFTDPNAAKQYIQEEGAPIVVK 228
G GPS+E+ L G K K G+P D + + G P+++K
Sbjct: 99 GFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIK 158
Query: 229 ADGLAAGKGVIVAMTLEEAYEAVDSML--LKNAFGSAGCRVIIEEFLEG-EEASFFALVD 285
A G+G+ V +E +++ K AFG+ G V IE+++E L D
Sbjct: 159 ATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDG--VYIEKYIENPRHVEIQVLAD 216
Query: 286 GE-NAIPLE----SAQ-DHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTV 339
NAI L S Q H+++ + +P+P LT EL+ + ++
Sbjct: 217 KYGNAIYLGERDCSIQRRHQKLLE------------EAPSPALTPELRRKMGDA------ 258
Query: 340 KGMSAEGCKFVGVLYAGLM--IEKKSGLPKLIEYNVR 374
+ + +G AG + + K+G +E N R
Sbjct: 259 ---AVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTR 292
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 449 |
| >gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 199 GIPTAKYKTFT----DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSM 254
GIP A + T ++ ++ G P+ VK L + G+ + EE A++
Sbjct: 6 GIPVAPFIVLTREDWVLATKEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEA 65
Query: 255 LLKNAFGSAGCRVIIEEFLEGEE 277
+ +V+IEE +EG E
Sbjct: 66 FQYDN------KVLIEEAIEGRE 82
|
This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF). Length = 201 |
| >gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 42/184 (22%), Positives = 68/184 (36%), Gaps = 20/184 (10%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK- 228
G+P S G K F K G+PT + D AA + + G P+V+K
Sbjct: 71 LGVPVINSS-HVIEACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALGYPVVLKP 129
Query: 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGEN 288
G + G+ V + +E ++ + GS I+E++ V G+
Sbjct: 130 VIG-SWGRLVALIRDKDELESLLE--HKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDE 186
Query: 289 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCK 348
AI A ++ T NT G P P+ +E++ + VK A G
Sbjct: 187 AI----AAIYRYSNHWRT--NTARGGKAEPCPL-DEEVEEL--------AVKAAEAVGGG 231
Query: 349 FVGV 352
V +
Sbjct: 232 VVAI 235
|
The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. Length = 280 |
| >gnl|CDD|223106 COG0027, PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 11/147 (7%)
Query: 132 DVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFM 191
D+LDGDA+ + + +V EA L +L + G T P++ A L ++ +
Sbjct: 60 DMLDGDALRAVVEREKPDYIVPEIEAIATDALV-ELEEEGY-TVVPNARATKLTMNREGI 117
Query: 192 KNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMT---LEEA 247
+ L ++ G+PT+KY+ + +++ G P VVK ++GKG V + +E+A
Sbjct: 118 RRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKA 177
Query: 248 YEAVDSMLLKNAFGSAGCRVIIEEFLE 274
+E G +G RVI+EEF++
Sbjct: 178 WEYAQQ----GGRGGSG-RVIVEEFVK 199
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| COG0151 | 428 | PurD Phosphoribosylamine-glycine ligase [Nucleotid | 100.0 | |
| PLN02257 | 434 | phosphoribosylamine--glycine ligase | 100.0 | |
| PRK13789 | 426 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PRK05784 | 486 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PRK00885 | 420 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| KOG0237 | 788 | consensus Glycinamide ribonucleotide synthetase (G | 100.0 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 100.0 | |
| PRK13790 | 379 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PRK01966 | 333 | ddl D-alanyl-alanine synthetase A; Reviewed | 100.0 | |
| PRK14570 | 364 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| PRK14568 | 343 | vanB D-alanine--D-lactate ligase; Provisional | 100.0 | |
| PRK14572 | 347 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| PRK14569 | 296 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 100.0 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 100.0 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 100.0 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 100.0 | |
| PRK14571 | 299 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| PRK05586 | 447 | biotin carboxylase; Validated | 100.0 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| PRK06111 | 450 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| PRK07178 | 472 | pyruvate carboxylase subunit A; Validated | 100.0 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 100.0 | |
| PRK08463 | 478 | acetyl-CoA carboxylase subunit A; Validated | 100.0 | |
| TIGR01205 | 315 | D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a | 100.0 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 100.0 | |
| PRK08654 | 499 | pyruvate carboxylase subunit A; Validated | 100.0 | |
| PRK07206 | 416 | hypothetical protein; Provisional | 100.0 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| PRK02186 | 887 | argininosuccinate lyase; Provisional | 100.0 | |
| PRK01372 | 304 | ddl D-alanine--D-alanine ligase; Reviewed | 100.0 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 100.0 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 100.0 | |
| COG1181 | 317 | DdlA D-alanine-D-alanine ligase and related ATP-gr | 100.0 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 100.0 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 100.0 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 100.0 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 100.0 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 100.0 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 100.0 | |
| COG0439 | 449 | AccC Biotin carboxylase [Lipid metabolism] | 100.0 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 100.0 | |
| COG0458 | 400 | CarB Carbamoylphosphate synthase large subunit (sp | 100.0 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 100.0 | |
| COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [L | 100.0 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 100.0 | |
| ), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071 | 194 | GARS_A: Phosphoribosylglycinamide synthetase, ATP- | 100.0 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.98 | |
| PRK06524 | 493 | biotin carboxylase-like protein; Validated | 99.98 | |
| KOG0238 | 670 | consensus 3-Methylcrotonyl-CoA carboxylase, biotin | 99.98 | |
| PF15632 | 329 | ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa | 99.97 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 99.97 | |
| PF07478 | 203 | Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In | 99.97 | |
| PRK10446 | 300 | ribosomal protein S6 modification protein; Provisi | 99.97 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 99.96 | |
| KOG0369 | 1176 | consensus Pyruvate carboxylase [Energy production | 99.96 | |
| PF02786 | 211 | CPSase_L_D2: Carbamoyl-phosphate synthase L chain, | 99.95 | |
| TIGR00768 | 277 | rimK_fam alpha-L-glutamate ligases, RimK family. T | 99.94 | |
| TIGR02144 | 280 | LysX_arch Lysine biosynthesis enzyme LysX. The fam | 99.94 | |
| PF13535 | 184 | ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A | 99.94 | |
| PRK13278 | 358 | purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D | 99.93 | |
| COG2232 | 389 | Predicted ATP-dependent carboligase related to bio | 99.93 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.91 | |
| KOG0368 | 2196 | consensus Acetyl-CoA carboxylase [Lipid transport | 99.91 | |
| PF02222 | 172 | ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T | 99.88 | |
| PRK13277 | 366 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo | 99.87 | |
| COG0189 | 318 | RimK Glutathione synthase/Ribosomal protein S6 mod | 99.85 | |
| PF02655 | 161 | ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 | 99.84 | |
| PF08443 | 190 | RimK: RimK-like ATP-grasp domain; InterPro: IPR013 | 99.84 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 99.83 | |
| COG3919 | 415 | Predicted ATP-grasp enzyme [General function predi | 99.81 | |
| COG1821 | 307 | Predicted ATP-utilizing enzyme (ATP-grasp superfam | 99.81 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.81 | |
| TIGR01435 | 737 | glu_cys_lig_rel glutamate--cysteine ligase/gamma-g | 99.77 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 99.76 | |
| PRK02471 | 752 | bifunctional glutamate--cysteine ligase/glutathion | 99.75 | |
| PRK12458 | 338 | glutathione synthetase; Provisional | 99.73 | |
| PLN02941 | 328 | inositol-tetrakisphosphate 1-kinase | 99.68 | |
| ), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844 | 100 | GARS_N: Phosphoribosylglycinamide synthetase, N do | 99.66 | |
| TIGR01380 | 312 | glut_syn glutathione synthetase, prokaryotic. This | 99.66 | |
| PRK05246 | 316 | glutathione synthetase; Provisional | 99.66 | |
| ), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02843">PF02843 | 93 | GARS_C: Phosphoribosylglycinamide synthetase, C do | 99.6 | |
| TIGR02291 | 317 | rimK_rel_E_lig alpha-L-glutamate ligase-related pr | 99.54 | |
| COG1759 | 361 | 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu | 99.38 | |
| PF14398 | 262 | ATPgrasp_YheCD: YheC/D like ATP-grasp | 99.34 | |
| PF01820 | 117 | Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; In | 99.23 | |
| TIGR01016 | 386 | sucCoAbeta succinyl-CoA synthetase, beta subunit. | 99.11 | |
| PF02955 | 173 | GSH-S_ATP: Prokaryotic glutathione synthetase, ATP | 99.07 | |
| PF14397 | 285 | ATPgrasp_ST: Sugar-transfer associated ATP-grasp | 99.06 | |
| PF05770 | 307 | Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- | 98.95 | |
| PRK00696 | 388 | sucC succinyl-CoA synthetase subunit beta; Provisi | 98.92 | |
| PF14305 | 239 | ATPgrasp_TupA: TupA-like ATPgrasp | 98.62 | |
| PF13549 | 222 | ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. | 98.52 | |
| COG0045 | 387 | SucC Succinyl-CoA synthetase, beta subunit [Energy | 98.42 | |
| PF08442 | 202 | ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 | 98.41 | |
| PLN02235 | 423 | ATP citrate (pro-S)-lyase | 98.19 | |
| PRK14046 | 392 | malate--CoA ligase subunit beta; Provisional | 98.17 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 98.07 | |
| PLN00124 | 422 | succinyl-CoA ligase [GDP-forming] subunit beta; Pr | 98.06 | |
| PF02750 | 203 | Synapsin_C: Synapsin, ATP binding domain; InterPro | 97.71 | |
| PF03133 | 292 | TTL: Tubulin-tyrosine ligase family; InterPro: IPR | 97.65 | |
| PF06973 | 188 | DUF1297: Domain of unknown function (DUF1297); Int | 97.0 | |
| KOG3895 | 488 | consensus Synaptic vesicle protein Synapsin [Signa | 96.91 | |
| PF14403 | 445 | CP_ATPgrasp_2: Circularly permuted ATP-grasp type | 96.65 | |
| KOG1057 | 1018 | consensus Arp2/3 complex-interacting protein VIP1/ | 96.15 | |
| PF14243 | 130 | DUF4343: Domain of unknown function (DUF4343) | 96.12 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 95.22 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 95.05 | |
| KOG2156 | 662 | consensus Tubulin-tyrosine ligase-related protein | 94.27 | |
| COG0505 | 368 | CarA Carbamoylphosphate synthase small subunit [Am | 94.19 | |
| PF11379 | 355 | DUF3182: Protein of unknown function (DUF3182); In | 93.85 | |
| KOG2157 | 497 | consensus Predicted tubulin-tyrosine ligase [Postt | 93.6 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 92.79 | |
| KOG2799 | 434 | consensus Succinyl-CoA synthetase, beta subunit [E | 92.78 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 92.65 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 91.79 | |
| PF02785 | 107 | Biotin_carb_C: Biotin carboxylase C-terminal domai | 91.41 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 90.53 | |
| smart00878 | 107 | Biotin_carb_C Biotin carboxylase C-terminal domain | 90.02 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 89.19 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 87.08 | |
| PRK05849 | 783 | hypothetical protein; Provisional | 85.87 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 85.74 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 85.72 | |
| PF06849 | 124 | DUF1246: Protein of unknown function (DUF1246); In | 84.38 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 84.32 | |
| PLN02771 | 415 | carbamoyl-phosphate synthase (glutamine-hydrolyzin | 82.96 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 82.1 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 81.64 | |
| TIGR03025 | 445 | EPS_sugtrans exopolysaccharide biosynthesis polypr | 80.15 |
| >COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=519.16 Aligned_cols=427 Identities=59% Similarity=0.937 Sum_probs=394.1
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
|||||||+|+|||+++|+|+++.-+..+++.|.|+++........+ ..+ .|.+.|.+++++.++|.+|+|+|.+++.+
T Consensus 1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G~a~~~~~~~~-~~~-~~~~~lv~fA~~~~idl~vVGPE~pL~~G 78 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTALEAYLVNI-EID-TDHEALVAFAKEKNVDLVVVGPEAPLVAG 78 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCccchhhhhccC-ccc-cCHHHHHHHHHHcCCCEEEECCcHHHhhh
Confidence 6899999999999999999998777788889999998753222222 233 68999999999999999999999999999
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeC
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~ 242 (519)
+.+.|++.|||++||+.+++++..+|..+|++++++|||++.|..+++.+++.+++++.+.|+||||....+++||.++.
T Consensus 79 vvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~ 158 (428)
T COG0151 79 VVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAM 158 (428)
T ss_pred hHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHcCCCEEEecccccCCCCeEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCC
Q 010065 243 TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVL 322 (519)
Q Consensus 243 ~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l 322 (519)
+.+|..+++.+++....|++...+++||||++|.|+|+.+++||+.+++++..++|++.++++.+|++|+|+.+.|++.+
T Consensus 159 ~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P~~ 238 (428)
T COG0151 159 TLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFI 238 (428)
T ss_pred CHHHHHHHHHHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECccccccccccCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999998777774457899999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 323 TKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 323 ~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+++..+++.+.+++++++.+.+.|..|.|+....||++++| |++||.|.|+|.+.++.+++.+-.||.+++.+.+.|+
T Consensus 239 t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G--PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~ 316 (428)
T COG0151 239 TDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG--PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGK 316 (428)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC--cEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCC
Confidence 99999999989999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCCCCc-ccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHH
Q 010065 403 LTGVTL-NWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVE 481 (519)
Q Consensus 403 ~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ 481 (519)
+..... .|.+++++.+++++.|||..+.++..|.+.++... .+..+||++......+.+.++++|+..|+++|+|.+
T Consensus 317 L~~~~~~~~~~~a~v~vvlA~~GYP~~~~kG~~I~~~~~~~~--~~~~vf~Agv~~~~~~~lvt~GgRvL~v~~~g~t~~ 394 (428)
T COG0151 317 LDEVEILFWDKGAAVGVVLAAEGYPGDPEKGDVITGDEEAEE--EGAKVFHAGVKLDDGGQLVTSGGRVLAVVGTGDTLE 394 (428)
T ss_pred ccccchhhccCCceEEEEEecCCCCCCCCCCCEEecChhhcc--cCcEEEEeeEeccCCceEEecCCeEEEEEecCCCHH
Confidence 888764 45556999999999999999999999999876432 268899999887444579999999999999999999
Q ss_pred HHHHHHHHHhhccccCCeeecccccccccccccc
Q 010065 482 EAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQF 515 (519)
Q Consensus 482 ea~~~a~~~~~~i~~~g~~~r~dig~~~~~~~~~ 515 (519)
||+++|+++++.|.++|.|||+|||.+.+.++++
T Consensus 395 eA~~~ay~~~~~i~~~g~~yRkDIG~~a~~~~~~ 428 (428)
T COG0151 395 EAQEKAYEALEKIHFDGLFYRKDIGSRALERKRI 428 (428)
T ss_pred HHHHHHHHHHhhcCCCCceeecccchhhhhhhcC
Confidence 9999999999999999999999999999988763
|
|
| >PLN02257 phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=546.76 Aligned_cols=429 Identities=83% Similarity=1.348 Sum_probs=384.9
Q ss_pred EEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHHHHH
Q 010065 86 LVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLAN 165 (519)
Q Consensus 86 liiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~~a~ 165 (519)
||||+|+|+|+++|+|.++.....+++.|+|+++...+....++.+|..|.+.+.++++++++|+|+++.|..++.++++
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~~~pgn~g~~~~~~~~~vp~~~~~d~~~l~~~a~~~~id~vvvg~E~~lv~~~~d 80 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVFCAPGNAGIATSGDATCVPDLDISDSAAVISFCRKWGVGLVVVGPEAPLVAGLAD 80 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEEECCCCHHHhhhccceeecCCCCCCHHHHHHHHHHcCCCEEEECCchHHHHHHHH
Confidence 68999999999999999986677889999999876654322232368889999999999999999999999999889999
Q ss_pred HHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHH
Q 010065 166 KLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLE 245 (519)
Q Consensus 166 ~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~ 245 (519)
.|+..|+|++|++.+++.+++||..+|++|+++|||+|++..+++.+++.+++++++||+||||..+++|+||.++++.+
T Consensus 81 ~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~ 160 (434)
T PLN02257 81 DLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLE 160 (434)
T ss_pred HHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHH
Q 010065 246 EAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKE 325 (519)
Q Consensus 246 el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~ 325 (519)
|+.++++.++....|+..+..+||||||+|+|+++.+++||+.++++...+.|+++++++.||++|+++++.|++.++++
T Consensus 161 el~~a~~~~~~~~~fg~~~~~vlIEefi~G~E~Sv~~~~dG~~~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~ 240 (434)
T PLN02257 161 EAYEAVDSMLVKGAFGSAGSEVVVEEFLDGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPE 240 (434)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCCCCEEEEEEEECCCcEEEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHH
Confidence 99999988764434444457899999999999999999998777888878888899999999999999999998778999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEE-cCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCC
Q 010065 326 LQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIE-KKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELT 404 (519)
Q Consensus 326 ~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~-~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~ 404 (519)
+.+++.+.+++.+++++.+.+++|.|++++||+++ +++ +|||+|+|+|||++.++.+++.++.||.+++++++.|++.
T Consensus 241 ~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~l~ 319 (434)
T PLN02257 241 LESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-LPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELS 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-CEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCCCC
Confidence 99988888888888999999999999999999998 555 6999999999999988888888999999999999999988
Q ss_pred CCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHH
Q 010065 405 GVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQ 484 (519)
Q Consensus 405 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~ 484 (519)
+.++.|.+.++++++++++|||+.+.++..|.++++.....+++.+||++......|++.++++|++.|++.|+|.+||+
T Consensus 320 ~~~~~~~~~~av~vv~a~~gYp~~~~~g~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~t~ggRvl~v~~~g~~~~~A~ 399 (434)
T PLN02257 320 GVSLTWSPDSAMVVVMASNGYPGSYKKGTVIKNLDEAEAVAPGVKVFHAGTALDSDGNVVAAGGRVLGVTAKGKDIAEAR 399 (434)
T ss_pred CCCceECCCceEEEEEcCCCCCCCCCCCCEeeCCccccccCCCCEEEECCceEccCCEEEECCCeEEEEEEecCCHHHHH
Confidence 77889988899999999999999998888999887643223567799988775346889999999999999999999999
Q ss_pred HHHHHHhhccccCCeeecccccccccccccc
Q 010065 485 DRAYLAVEEINWPGGFYRRDIGWRALPQKQF 515 (519)
Q Consensus 485 ~~a~~~~~~i~~~g~~~r~dig~~~~~~~~~ 515 (519)
++|+++++.|+|+|.|||+|||.+++.+++-
T Consensus 400 ~~ay~~~~~i~~~~~~~R~DIg~~~~~~~~~ 430 (434)
T PLN02257 400 ARAYDAVDQIDWPGGFFRRDIGWRAVARLQV 430 (434)
T ss_pred HHHHHHHhcCCCCCCEeechhhHHHHHhhhh
Confidence 9999999999999999999999998877663
|
|
| >PRK13789 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-67 Score=542.37 Aligned_cols=423 Identities=47% Similarity=0.784 Sum_probs=378.2
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
..|||||+|+|+++|+++|+|+++..+..+++.|+|.++........+ .+|..|.+.|+++++++++|+|++++|++++
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~-~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~l~ 81 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPAD-SFSILDKSSVQSFLKSNPFDLIVVGPEDPLV 81 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhcccccccc-CcCcCCHHHHHHHHHHcCCCEEEECCchHHH
Confidence 358999999999999999999998656778888998876543211112 4688999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEE
Q 010065 161 SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIV 240 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~ 240 (519)
+++++.++++|+|++|++..++.+++||..+|++|+++|||+|++..+++.+++.+++++++||+||||..+++|+||.+
T Consensus 82 ~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~v 161 (426)
T PRK13789 82 AGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVTV 161 (426)
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCC
Q 010065 241 AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAP 320 (519)
Q Consensus 241 v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~ 320 (519)
+++.+|+.++++.++....++..+..+||||||+|+|+++.+++||+.+.+++..+.|++.++++.+|++|++++++|++
T Consensus 162 v~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G~E~Sv~~~~dg~~~~~lp~~~d~k~~~d~d~g~~tggmg~~~P~p 241 (426)
T PRK13789 162 ATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEGQEASIFAISDGDSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAP 241 (426)
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCCeEEEEEEEECCCEEEEccceEecccccCCCCCCCCCCceEEeeCC
Confidence 99999999999998765555544568999999999999999999888777777777888999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 321 VLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 321 ~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
.++++..+++++.+.+.+.++++++|+.|.|++++|||++++| ++||+|+|+|||++.++.+++.+..||.+++++++.
T Consensus 242 ~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g-~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~ 320 (426)
T PRK13789 242 VITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEG-EPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAAST 320 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCC-CEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHc
Confidence 7799999999887777788999999988889999999999877 799999999999999988888889999999999999
Q ss_pred CCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCH
Q 010065 401 GELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDV 480 (519)
Q Consensus 401 g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~ 480 (519)
|+++..++.|.+++++.++++++|||..+.++..+. +++.. .+++.+||+++.. ..|++.++++|++.|++.|+|.
T Consensus 321 g~l~~~~~~~~~~~s~~vv~a~~gyp~~~~~g~~i~-~~~~~--~~~~~if~a~~~~-~~~~~~t~ggRvl~v~~~g~~~ 396 (426)
T PRK13789 321 GKIKVVNLKLKQGAAAVVVLAAQGYPDSYEKNIPLN-LPETS--GQNVVLFHAGTKK-KDGKVFSSGGRILGIVAQGKDL 396 (426)
T ss_pred CCCCCCCceecCCceEEEEECcCCcCCCcCCCCEEe-ccCcC--CCCcEEEEeeeee-eCCEEEeCCCeEEEEEEecCCH
Confidence 998777788888899999999999999887776666 55421 1467799988764 5788999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCeeecccccccc
Q 010065 481 EEAQDRAYLAVEEINWPGGFYRRDIGWRA 509 (519)
Q Consensus 481 ~ea~~~a~~~~~~i~~~g~~~r~dig~~~ 509 (519)
+||+++|++++++|+|+|.|||+|||.+.
T Consensus 397 ~~A~~~ay~~~~~i~~~~~~~R~Dig~~~ 425 (426)
T PRK13789 397 KDSVDQAYSFLEKIQAPKTFYRKDIGRRA 425 (426)
T ss_pred HHHHHHHHHHHhcCCCCCCEEeccccccc
Confidence 99999999999999999999999999865
|
|
| >PRK05784 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=507.33 Aligned_cols=426 Identities=32% Similarity=0.506 Sum_probs=362.9
Q ss_pred cEEEEEeCChhHHHHHHHHHhcC-CCcEEEEecC--CCCCcCCCC---CccccCCCCCCHHHHHHHHHHcCCcEEEECCC
Q 010065 83 VVVLVIGGGGREHALCYALKRSH-SCDAVFCAPG--NAGISNSGD---ATCIPDLDVLDGDAVISFCRKWSVGLVVVGPE 156 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~-g~~~v~~~~~--~~~~~~~~~---~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E 156 (519)
|||||+|+|+++|+++|+|+++. +++++.+ +. |+++...+. ...+ ..+..|.+.++++++++++|+|++++|
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~-~g~~Npg~~~~~~~~~~~~~-~~~~~d~~~l~~~a~~~~id~Vi~g~E 78 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYAL-SSYLNPGINSVVKATGGEYF-IGNINSPEEVKKVAKEVNPDLVVIGPE 78 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEE-ECCCChhheeecccccCceE-ecCCCCHHHHHHHHHHhCCCEEEECCc
Confidence 68999999999999999998875 5655554 55 666544321 1223 567889999999999999999999999
Q ss_pred hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCC-CeeecCCHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010065 157 APLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTA-KYKTFTDPNAAKQYIQEEGAPIVVKADGLAAG 235 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p-~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs 235 (519)
+++++++++.|+.+|+|++|++.+++.+++||..||++|+++|||+| ++..+++.+++.++++.. +|+||||..++||
T Consensus 79 ~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~~-~PvVVKP~~~agg 157 (486)
T PRK05784 79 EPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEYG-GSVAIKPARQAGG 157 (486)
T ss_pred hHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhhc-CCEEEeeCCCCCC
Confidence 99998999999999999999999999999999999999999999996 788889999988888665 6999999999999
Q ss_pred CcEEEeCCHHH-----HHHHH----HHHHhh-ccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCC
Q 010065 236 KGVIVAMTLEE-----AYEAV----DSMLLK-NAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 236 ~GV~~v~~~~e-----l~~a~----~~~~~~-~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~ 305 (519)
+||.++++.++ +.+++ ++++.. ..|+..+..+||||||+|+|++|++++||+.+++++..+.++++++++
T Consensus 158 kGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~d 237 (486)
T PRK05784 158 KGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDG 237 (486)
T ss_pred CCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCCeEEEEEEEECCCeEEEeeeeEeecceecCC
Confidence 99999999873 33444 444322 334445678999999999999999999888777788888889999999
Q ss_pred CCCCCCCceEEec----CCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEE-cCCCceEEEEEeCCCCCCc
Q 010065 306 TGPNTGGMGAYSP----APVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIE-KKSGLPKLIEYNVRFGDPE 379 (519)
Q Consensus 306 ~~~~~g~~~~~~P----~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~-~~g~~~~viEiN~R~G~~~ 379 (519)
.++++|+++++.| .+.++++..+++.+. ++.+++++... |+.|+|++|+|++++ ++| |++||+|+|+|++.
T Consensus 238 ~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~-v~~~l~al~~~~g~~~~G~l~~elmlt~~~G--P~vIE~n~R~Gdpe 314 (486)
T PRK05784 238 IGPETGGMGSISGPGELLPFINEEEYEEAVEI-VKRTIDAIYKETGERYVGVISGQMMLTELWG--PTVIEYYSRFGDPE 314 (486)
T ss_pred CCCCCCCCcccCCccccCCCCCHHHHHHHHHH-HHHHHHHHHHhcCCCcEEEEEEEEEEecCCC--cEEEEEecccCCch
Confidence 9999999999999 775678877777754 44455666555 888889999999999 888 99999999999999
Q ss_pred hHHHHHHhCCCHHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEEeeeee
Q 010065 380 CQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFHAGTAL 457 (519)
Q Consensus 380 ~~~~~~~~G~d~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 457 (519)
++.+++.++.|+.+++++++.|++.+.++.|++.+++.+++++.|||.. +.++..|.+.++.. ..+++.+||+++..
T Consensus 315 ~~~llp~l~~dl~~~~~~~~~g~l~~~~~~~~~~~~~~vv~as~gYp~~~~~~~g~~i~~~~~~~-~~~~~~v~~ag~~~ 393 (486)
T PRK05784 315 ASNIIPRIESDFGELFELAATGKLSKAKIKFNEEPSVVKAIAPLGYPLSRDLASGRRIVVDLDKI-KEEGCLVFFGSVEL 393 (486)
T ss_pred HHHHHHhccCCHHHHHHHHHcCCCCCCCeeecCCceEEEEECCCCCCCcccCCCCCEEECCcccc-ccCCCEEEECCcee
Confidence 9999999988999999999999988778888888899999999999988 77888887765311 11356689988764
Q ss_pred cCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhhcc-ccCCeeeccccccccccccccc
Q 010065 458 DADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEI-NWPGGFYRRDIGWRALPQKQFA 516 (519)
Q Consensus 458 ~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i-~~~g~~~r~dig~~~~~~~~~~ 516 (519)
..|++.++++|++.|++.|+|.++|+++|++++++| +|+|.|||+|||.+++++++|.
T Consensus 394 -~~~~~~t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~~yR~DIg~~~~~~~~~~ 452 (486)
T PRK05784 394 -EGGQLITKGSRALEIVAIGKDFEEAYEKLERCISYVSSDTKLIYRTDIGSPEYMEYQIE 452 (486)
T ss_pred -eCCEEEEcCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCCCcccccCchHHHHHHHH
Confidence 578899999999999999999999999999999999 9999999999999999999874
|
|
| >PRK00885 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-61 Score=500.95 Aligned_cols=418 Identities=62% Similarity=1.011 Sum_probs=365.5
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
|||||+|+|+++++++|+++++.++.+++++|.|++....+. .+ .+++.|.+.++++++++++|+|+++.|+.+...
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~~~n~g~~~~~~--~~-~~~~~d~~~l~~~~~~~~id~vi~~~e~~l~~~ 77 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNAGTALLAE--NV-VIDVTDIEALVAFAKEEGIDLTVVGPEAPLVAG 77 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCCHHHHhhcc--cc-CCCCCCHHHHHHHHHHhCCCEEEECCchHHHHH
Confidence 689999999999999999999877778888888877654432 34 578889999999999999999999999888778
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeC
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~ 242 (519)
+++.++++|+|++|++++++.+++||..+|++|+++|||+|++..+.+.+++.+++++++||+|+||..++||+||++++
T Consensus 78 ~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~ 157 (420)
T PRK00885 78 IVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAM 157 (420)
T ss_pred HHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeC
Confidence 88899999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCC
Q 010065 243 TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVL 322 (519)
Q Consensus 243 ~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l 322 (519)
+.+|+.++++.++....++.....+||||||+|+|+++.+++||+.+.+++..+.+++.++++.++++|+++++.|++.+
T Consensus 158 ~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l 237 (420)
T PRK00885 158 TLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDGEEASFFAFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVV 237 (420)
T ss_pred CHHHHHHHHHHHhhcccccCCCCeEEEEEccCCcEEEEEEEECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCC
Confidence 99999999999875433333456899999999999999999988777767766677778888888999999999999768
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 323 TKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 323 ~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+++..+++.+...+.+.+++.++|+.++|++|+||+++++| +||+|+|+|+|++.++.+++.++.|+.+++++++.|.
T Consensus 238 ~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g--~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~ 315 (420)
T PRK00885 238 TEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG--PKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGK 315 (420)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC--cEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCC
Confidence 88888877765556677888899998889999999999888 9999999999998887888888999999999999999
Q ss_pred CCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHH
Q 010065 403 LTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEE 482 (519)
Q Consensus 403 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~e 482 (519)
+++.++.+.+..++++++++++||..+.++..+.+++++. .+.+++.+... ..+.+.++++|+++|++.|+|.+|
T Consensus 316 ~~~~~~~~~~~~a~~~~~~~~gy~~~~~~~~~i~~~~~~~----~~~~~~~~~~~-~~~~~~~~g~R~~~vi~~g~t~~e 390 (420)
T PRK00885 316 LDEVELEWDDRAAVGVVLAAKGYPGDYRKGDVITGLEAAD----ADKVFHAGTKL-EDGKLVTNGGRVLCVTALGDTLEE 390 (420)
T ss_pred CCCCCceECCCcEEEEEEeCCCCCCCCCCCCEeecccccC----CCEEEECceec-cCCeEEEeCCEEEEEEEecCCHHH
Confidence 7766677767788899999999998877777777776532 23566666553 458899999999999999999999
Q ss_pred HHHHHHHHhhccccCCeeeccccccccc
Q 010065 483 AQDRAYLAVEEINWPGGFYRRDIGWRAL 510 (519)
Q Consensus 483 a~~~a~~~~~~i~~~g~~~r~dig~~~~ 510 (519)
|+++|+++++.|+++|.|||+|||.+++
T Consensus 391 A~~~a~~~~~~i~~~~~~~r~dig~~~~ 418 (420)
T PRK00885 391 AQKRAYAALDKIDFDGGFYRRDIGYRAL 418 (420)
T ss_pred HHHHHHHHHhccCCCCCEeechhhhhhh
Confidence 9999999999999999999999999765
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=481.39 Aligned_cols=416 Identities=31% Similarity=0.455 Sum_probs=347.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC--CCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG--NAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~--~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
.|||||+|+|+++|+++|+|+++ |.+++.+ +. |++....++ ..+ .+++.|.+.++++|+++++|+|+++.|..+
T Consensus 2 ~~kVLvlG~G~re~al~~~l~~~-g~~v~~~-~~~~Npg~~~~a~-~~~-~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l 77 (435)
T PRK06395 2 TMKVMLVGSGGREDAIARAIKRS-GAILFSV-IGHENPSIKKLSK-KYL-FYDEKDYDLIEDFALKNNVDIVFVGPDPVL 77 (435)
T ss_pred ceEEEEECCcHHHHHHHHHHHhC-CCeEEEE-ECCCChhhhhccc-cee-ecCCCCHHHHHHHHHHhCCCEEEECCChHH
Confidence 47999999999999999999987 7655544 55 666544332 223 578899999999999999999999988888
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC-eeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcE
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK-YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGV 238 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~-~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV 238 (519)
..++++.|++.|+|++|++.+++.+++||..||++|+++|||+|+ +..+.+.+++..+..+++||+||||.+++||+||
T Consensus 78 ~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~~~PvVVKP~~~sggkGV 157 (435)
T PRK06395 78 ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSMKDVAVKPIGLTGGKGV 157 (435)
T ss_pred HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhhCCCEEEEeCCCCCCCCe
Confidence 778888899999999999999999999999999999999999974 4466667777777778899999999999999999
Q ss_pred EEeCC----HHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCce
Q 010065 239 IVAMT----LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMG 314 (519)
Q Consensus 239 ~~v~~----~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (519)
.++.+ .+++..+..+.+ +.+..+||||||+|.||++++++||+.+++++..+.+++.++++.++++|+++
T Consensus 158 ~v~~~~~~~~~ea~~~~~~~~------~~~~~viIEEfl~G~E~Svd~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG 231 (435)
T PRK06395 158 KVTGEQLNSVDEAIRYAIEIL------DRDGVVLIEKKMTGEEFSLQAFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMG 231 (435)
T ss_pred EEecCchhhHHHHHHHHHHHh------CCCCcEEEEeecCCceEEEEEEEcCCeEEEecccceeeecccCCCCCccCCCc
Confidence 99954 334333333332 13468999999999999999999998888888888888999999999999999
Q ss_pred EEe----cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCC
Q 010065 315 AYS----PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESD 390 (519)
Q Consensus 315 ~~~----P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d 390 (519)
++. |.+.++++..+++.+ +++.+.+++...+..++|++++||+++++| ||+||+|+|+|++..+.+++.+..|
T Consensus 232 ~~s~~~~~~p~l~~~~~~~i~~-i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g--p~ViE~n~R~gdpe~~~il~~l~~d 308 (435)
T PRK06395 232 SISDRDFSLPFLSKDAPERAKH-ILNDIIRAMKDENNPFKGIMYGQFMDTPNG--VKVIEINARFADPEGINVLYLLKSD 308 (435)
T ss_pred cccCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCCceEEEEEEEEEEeCCC--cEEEEEeCCCCCccHHhhhhhcccC
Confidence 887 444488998888855 555677777878888899999999999888 9999999999999888899999999
Q ss_pred HHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeE
Q 010065 391 LAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRV 470 (519)
Q Consensus 391 ~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rv 470 (519)
|.+++++++.|++.. ...+.+..++..++++.|||..+.++ .|...+.+ ..+++.+|+.+... ..+.+.++++|+
T Consensus 309 ~~~~~~~~~~g~l~~-~~~~~~~~~~~~~l~~~gYp~~~~~g-~i~~~~~~--~~~~~~~~~~~~~~-~~~~~~s~ggRv 383 (435)
T PRK06395 309 FVETLHQIYSGNLNG-SIKFERKATVLKYIVPPGYGENPSPG-RIKIDKTI--FDSNSDVYYASVSG-TLNDVKTSGSRS 383 (435)
T ss_pred HHHHHHHHhcCCCCC-CceecCCCEEEEEEecCCCCCCCCCC-ceeccccc--cCCCCEEEEeeccc-cCCCeEECCCcE
Confidence 999999999998755 56666667777899999999988776 56544322 12455677776542 234589999999
Q ss_pred EEEEEecCCHHHHHHHHHHHhhccccCCeeeccccccccccccccc
Q 010065 471 LGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFA 516 (519)
Q Consensus 471 g~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~~~~~~~~~~ 516 (519)
++|++.|+|.+||+++|+++++.|+ .+.|||+|||.++|++++|.
T Consensus 384 ~~vv~~g~~~~eA~~~a~~~~~~I~-~~~~~R~Dig~~~~~~~~~~ 428 (435)
T PRK06395 384 LAIIAKGDSIPEASEKVDSDLNAVH-GSYYVRRDIGDSDFIRKKIK 428 (435)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhccC-CCcEeecchhhHHHHHHHHH
Confidence 9999999999999999999999999 89999999999999998874
|
|
| >KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-59 Score=466.30 Aligned_cols=425 Identities=60% Similarity=0.978 Sum_probs=399.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCcccc--CCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIP--DLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~--~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
+.+|||||+|+|||.++|+|++++-+..+++.|+|.+++. .++..++ .++..|.+++.++|+++++.+|++|+|.++
T Consensus 2 ~~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a~-~~~~~~~~~dI~~~d~~ala~f~~e~~I~lVvvGPE~PL 80 (788)
T KOG0237|consen 2 RVNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTAS-GDASKVPNLDISVADFEALASFCKEHNINLVVVGPELPL 80 (788)
T ss_pred ceEEEEEcCCchHhHHHHHhhcCCccceEEEccCCCCccc-CccccCcccccChhhHHHHHHHHHHcceeEEEECCchhh
Confidence 4689999999999999999999999999999999998876 3344444 455569999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC-CCEEEEeCCCCCCCcE
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG-APIVVKADGLAAGKGV 238 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g-~P~VvKP~~g~gs~GV 238 (519)
+.+++..|.+.|||++||+.+++.+..+|..+|+++.++|||++.|..+++.+++..+++..+ .++|||...-..++||
T Consensus 81 ~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGV 160 (788)
T KOG0237|consen 81 VAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAGKGV 160 (788)
T ss_pred hhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhCCCcceEEeecccccCCce
Confidence 999999999999999999999999999999999999999999999999999999999999998 5699999999999999
Q ss_pred EEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEec
Q 010065 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSP 318 (519)
Q Consensus 239 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P 318 (519)
.+..+.+|..+++++++....|++....++|||+++|.|+|+-++.||..+.+++..++|++.++++.+|++|+++.++|
T Consensus 161 iv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEGeEvS~laftDG~s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~p 240 (788)
T KOG0237|consen 161 IVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEGEEVSFLAFTDGYSVRPLPPAQDHKRLGDGDTGPNTGGMGAYAP 240 (788)
T ss_pred EeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCcceEEEEEEecCcccccCCcccchhhhcCCCCCCCCCCcccccc
Confidence 99999999999999999877888888999999999999999999999998899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 319 APVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 319 ~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
++..++++.+.+++.+++.+++-++..|+.|.|+...-+|+++++ |.++|.|.|+|.+.++.+++.+..|+++.+...
T Consensus 241 aPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~--P~vLEfN~RFGDPEtQv~l~lLesDL~evi~a~ 318 (788)
T KOG0237|consen 241 APVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDG--PKVLEFNVRFGDPETQVLLPLLESDLAEVILAC 318 (788)
T ss_pred CCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecCC--ccEEEEecccCCchhhhhHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecC
Q 010065 399 CRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGK 478 (519)
Q Consensus 399 ~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~ 478 (519)
+.|++....+.|.+..++.+++++.+||+.+.++..|.++++. ..+...+||+|... ..+.+.++++|+..|++.++
T Consensus 319 ~~~~L~~~~i~w~~~sa~~VV~as~gYP~sy~KG~~It~~~~~--~~~~~rVFHAGTs~-~ss~vvTNGGRVLsVTA~~~ 395 (788)
T KOG0237|consen 319 CNGRLDTVDIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPEA--DRPGTRVFHAGTSL-DSSNVVTNGGRVLSVTATGD 395 (788)
T ss_pred hhCCccccCccccccceEEEEEecCCCCCCCcCCcccccCccc--CCCcceEEeccccc-cccceEecCceEEEEEecCc
Confidence 9999999999999889999999999999999999999999885 45688999999887 35578899999999999999
Q ss_pred CHHHHHHHHHHHhhccccCCeeeccccccccccc
Q 010065 479 DVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512 (519)
Q Consensus 479 t~~ea~~~a~~~~~~i~~~g~~~r~dig~~~~~~ 512 (519)
+.++|.+.|+++.+.|.|.|.+||+|||++.|--
T Consensus 396 ~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~ra~~~ 429 (788)
T KOG0237|consen 396 DLESAAETAYKAVQVISFSGKFYRKDIAWRAFKN 429 (788)
T ss_pred hHHHHHHHHHHHheEEeeccccccchhhhhhcch
Confidence 9999999999999999999999999999997753
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=477.45 Aligned_cols=421 Identities=57% Similarity=0.921 Sum_probs=357.4
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCc-EEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCD-AVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVS 161 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~-~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~ 161 (519)
|||+|+|+|++++.++|++++. ++. .+++.++|++.........+ ..|+.|.+.++++++++++|+|+++.|..+..
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~~~~~~id~vi~~~e~~l~~ 78 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQS-PLVKYVYVAPGNAGTARLAKNKNV-AISITDIEALVEFAKKKKIDLAVIGPEAPLVL 78 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhC-CCccEEEEECCCHHHhhhcccccc-cCCCCCHHHHHHHHHHhCCCEEEECCchHHHH
Confidence 6899999999999999999887 543 55556777766544322333 56889999999999999999999998877766
Q ss_pred HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC-EEEEeCCCCCCCcEEE
Q 010065 162 GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGLAAGKGVIV 240 (519)
Q Consensus 162 ~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P-~VvKP~~g~gs~GV~~ 240 (519)
.+++.++.+|+|++|++++++.+++||..||++|+++|||+|++..+.+.+++.+++++++|| +|+||..++||+||++
T Consensus 79 ~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~ 158 (423)
T TIGR00877 79 GLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEKGAPAIVVKADGLAAGKGVIV 158 (423)
T ss_pred HHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEE
Confidence 788889999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCC
Q 010065 241 AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAP 320 (519)
Q Consensus 241 v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~ 320 (519)
+++.+|+.++++.++... ++.....+||||||+|+|+++.++.||+.+..++..+.+++.++++.++++++++++.|++
T Consensus 159 v~~~~el~~~~~~~~~~~-~g~~~~~~lvEe~i~G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 237 (423)
T TIGR00877 159 AKTNEEAIKAVEEILEQK-FGDAGERVVIEEFLDGEEVSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAP 237 (423)
T ss_pred ECCHHHHHHHHHHHHHHh-cCCCCCeEEEEECccCceEEEEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCC
Confidence 999999999998886532 2223468999999999999999999887666666666666777888888889989999986
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 321 VLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 321 ~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
.++++...++.+.+.+.+.+++.++++.++|++|+||+++++| +|++|||||+|++.++.+.+.+++|+.+++++++.
T Consensus 238 ~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g--~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~ 315 (423)
T TIGR00877 238 VFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG--PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVE 315 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC--cEEEEEEccCCCccceeEecccCCCHHHHHHHHHc
Confidence 6888877777776777778888888887789999999999888 99999999999887766777789999999999999
Q ss_pred CCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCH
Q 010065 401 GELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDV 480 (519)
Q Consensus 401 g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~ 480 (519)
|.++++++.+.+..++.+++++++||....++..|.+.+ . ...+++.+++.+... ..+.+.++++|+++|++.|+|.
T Consensus 316 g~l~~~~~~~~~~~a~~~~~~~~~yp~~~~~~~~i~~~~-~-~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~vi~~g~~~ 392 (423)
T TIGR00877 316 GKLDEVELRFDNRAAVTVVLASEGYPGDYRKGDPITGEP-L-IEAEGVKVFHAGTKQ-DNGKLVTSGGRVLAVTALGKSL 392 (423)
T ss_pred CCCCCCCceECCCceEEEEEecCCcCCCCCCCCEeeCCc-c-cccCCCEEEECceec-cCCEEEEcCCEEEEEEEecCCH
Confidence 987766677777788888888899998776666776653 2 223566677655433 4688899999999999999999
Q ss_pred HHHHHHHHHHhhccccCCeeecccccccccc
Q 010065 481 EEAQDRAYLAVEEINWPGGFYRRDIGWRALP 511 (519)
Q Consensus 481 ~ea~~~a~~~~~~i~~~g~~~r~dig~~~~~ 511 (519)
++|++++++++++|+++|.|||+|||.+.++
T Consensus 393 ~~a~~~~~~~~~~i~~~~~~~r~dig~~~~~ 423 (423)
T TIGR00877 393 EEARERAYEAVEYIKFEGMFYRKDIGFRALE 423 (423)
T ss_pred HHHHHHHHHHHhcCCCCCCEEecccchhhhC
Confidence 9999999999999999999999999997753
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >PRK13790 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-55 Score=448.66 Aligned_cols=368 Identities=44% Similarity=0.738 Sum_probs=324.5
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecC
Q 010065 130 DLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT 209 (519)
Q Consensus 130 ~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~ 209 (519)
.+|..|.+.++++|+++++|+|+++.|..++.++++.|+..|+|++|++++++.+++||..+|++|+++|||+|++..+.
T Consensus 10 ~~~~~d~~~l~~~~~~~~id~vi~g~E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~ 89 (379)
T PRK13790 10 EISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVE 89 (379)
T ss_pred cCCCCCHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEEC
Confidence 56888999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCee
Q 010065 210 DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENA 289 (519)
Q Consensus 210 ~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~ 289 (519)
+.+++.+++++++||+|+||..+++|+||.+++|.+|+.++++.++.. ..+..+||||||+|+|+++.++++|+..
T Consensus 90 ~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~----~~~~~vlvEe~i~G~E~sv~~~~~g~~~ 165 (379)
T PRK13790 90 RKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGD----EEEGTVVFETFLEGEEFSLMTFVNGDLA 165 (379)
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc----CCCCeEEEEEcccCceEEEEEEeeCCEE
Confidence 999998888999999999999999999999999999999999987631 1346899999999999999999988755
Q ss_pred EEe-ccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEE
Q 010065 290 IPL-ESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKL 368 (519)
Q Consensus 290 ~~~-~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~v 368 (519)
.++ ...+.++++++++.++++|+++.++|++.++++..+++.+.+.+.+.+++.+.|+.|.|++|+||+++++| +||
T Consensus 166 ~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g--~~v 243 (379)
T PRK13790 166 VPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG--PKV 243 (379)
T ss_pred EecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC--eEE
Confidence 544 34556778899999999999999999876888877777555656677888888998889999999999888 999
Q ss_pred EEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCe
Q 010065 369 IEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSV 448 (519)
Q Consensus 369 iEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 448 (519)
+|+|+|+|++..+.+++.+|+|+.+++++.+.|+ .+.+.+.+..++.+.+++.+||..+.++..|.+++. +.
T Consensus 244 iEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~--~~~~~~~~~~~~~v~~~s~gyp~~~~~~~~i~~~~~-----~~- 315 (379)
T PRK13790 244 IEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGK--RTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDL-----NE- 315 (379)
T ss_pred EEEEcccCCCcceeeecccCCCHHHHHHHHHcCC--CCceeEcCCCEEEEEEccCCCCCCCCCCCeeeecCC-----CC-
Confidence 9999999998887788888999999999999997 344667777888999999999998877777776531 22
Q ss_pred EEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCeeeccccccccccc
Q 010065 449 KIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512 (519)
Q Consensus 449 ~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~~~~~~ 512 (519)
.+|+.+... ..|.+.++++|++.|++.|+|.+||+++|+++++.|+++|.+||+|||.+++.+
T Consensus 316 ~~~~~~~~~-~~~~~~~~ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~R~dig~~~~~~ 378 (379)
T PRK13790 316 NYFVSGLKK-QGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQIQSDHLFYRHDIANKALQL 378 (379)
T ss_pred eEEECCccc-cCCeEEECCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhhHhhhc
Confidence 477777543 467799999999999999999999999999999999999999999999988754
|
|
| >PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=370.90 Aligned_cols=309 Identities=22% Similarity=0.196 Sum_probs=242.6
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCC--cccc--C
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDA--TCIP--D 130 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~--~~v~--~ 130 (519)
++||+|||||.|+||+||+.||.+ +..+|.+. |++++.++.+..+.+..... ..+. .
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~------------------v~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 63 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKS------------------VLKALDKE-KYEVVPIGITKDGRWYLIDADNMELADDD 63 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHH------------------HHHHhccc-CCEEEEEEECCCCCEeeccchhhhccccc
Confidence 679999999999999999999876 67888665 89988887554443322110 0010 0
Q ss_pred CCCCCHHHHHHHHHHc--CCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCC
Q 010065 131 LDVLDGDAVISFCRKW--SVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTA 203 (519)
Q Consensus 131 ~d~~d~~~l~~~~~~~--~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p 203 (519)
.+..+.. +....+.. ++|+||+. +|++.+|++ |+.+|+||+|+++.++.+++||..+|++|+++|||+|
T Consensus 64 ~~~~~~~-~~~~~~~~~~~~D~vf~~lhG~~gedg~iq~l---le~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p 139 (333)
T PRK01966 64 NDKEDLS-LLILPSGGSEEVDVVFPVLHGPPGEDGTIQGL---LELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVA 139 (333)
T ss_pred ccccccc-hhccccccCccCCEEEEccCCCCCCCcHHHHH---HHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCC
Confidence 0001111 11111122 69999992 699987666 9999999999999999999999999999999999999
Q ss_pred CeeecCCHHH----HHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEE
Q 010065 204 KYKTFTDPNA----AKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEAS 279 (519)
Q Consensus 204 ~~~~v~~~~~----~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~s 279 (519)
++..+.+.++ +..+.+.++||+||||..++||.||.++++.+|+.++++.++. .++.+|||+||+|+|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEefI~G~E~~ 213 (333)
T PRK01966 140 PYVVLTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFE------YDRKVLVEQGIKGREIE 213 (333)
T ss_pred CEEEEeccccchhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHh------cCCcEEEEcCcCCEEEE
Confidence 9998876544 3445678999999999999999999999999999999998874 46789999999999999
Q ss_pred EEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEE
Q 010065 280 FFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMI 359 (519)
Q Consensus 280 v~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~ 359 (519)
|.++.++..+.++........+++++.+|..+.+.+++|+. ++++..+++++.+ .++++++|++ |++|+||++
T Consensus 214 v~vl~~~~~~~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a----~~~~~aLg~~--G~~rvDf~~ 286 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELA----IKAFKALGCS--GLARVDFFL 286 (333)
T ss_pred EEEECCCCeEcccEEEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCc--ceEEEEEEE
Confidence 99997533344333333333588888888777778889998 9999999998877 4688999987 999999999
Q ss_pred EcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHhC
Q 010065 360 EKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACRG 401 (519)
Q Consensus 360 ~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~g 401 (519)
+++| ++||+|||||||+|.. ++++. .|+++.+++..++..
T Consensus 287 ~~~g-~~~vlEiNt~Pg~t~~-s~~p~~~~~~G~~~~~l~~~ii~~ 330 (333)
T PRK01966 287 TEDG-EIYLNEINTMPGFTPI-SMYPKLWEASGLSYPELIDRLIEL 330 (333)
T ss_pred cCCC-CEEEEEeeCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9876 8999999999999887 56554 399999998877643
|
|
| >PRK14570 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=368.68 Aligned_cols=312 Identities=17% Similarity=0.162 Sum_probs=234.5
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC-CCcCCCCC-ccccC-C
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA-GISNSGDA-TCIPD-L 131 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~-~~~~~~~~-~~v~~-~ 131 (519)
++||+|||||.|+||+||+.||.+ +..+|.+..+++++.+..+.. +.|..... ..... .
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~------------------v~~~l~~~~~~~v~~i~i~~~~g~~~~~~~~~~~~~~~ 63 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYG------------------IYSALLKLDKYNIYSVFIDKCTGIWYLLDSVPDPPKLI 63 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHH------------------HHHHhccccCceEEEEEEecCCCeEEecCccccccccc
Confidence 569999999999999999999987 566663333677766554322 32211100 00000 0
Q ss_pred CCCC---------HHHHHHHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHH
Q 010065 132 DVLD---------GDAVISFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDK 197 (519)
Q Consensus 132 d~~d---------~~~l~~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~ 197 (519)
...+ ...+.. .+..++|+||+ .+||+.+|++ |+.+|+||+|+++.++++++||..+|++|++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~-~~~~~~D~vf~~lhG~~GEdg~iqgl---le~~giPy~Gs~~~asal~~DK~~tK~~l~~ 139 (364)
T PRK14570 64 KRDVLPIVSLIPGCGIFVN-NKNLEIDVVFPIVHGRTGEDGAIQGF---LKVMDIPCVGAGILGSAISINKYFCKLLLKS 139 (364)
T ss_pred ccccccccccccccccccc-CcCcCCCEEEEcCCCCCCCcCHHHHH---HHHcCCCccCCCHHHHHHHHCHHHHHHHHHH
Confidence 0000 000000 12236999999 3899988777 9999999999999999999999999999999
Q ss_pred cCCCCCCeeecCC------HHHHHH-HHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEE
Q 010065 198 YGIPTAKYKTFTD------PNAAKQ-YIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIE 270 (519)
Q Consensus 198 ~Gi~~p~~~~v~~------~~~~~~-~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvE 270 (519)
+|||+|++..+.. .+++.+ +.+.++||+||||+++++|.||.++++.+|+.++++.++. .+..+|||
T Consensus 140 ~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~------~~~~vlVE 213 (364)
T PRK14570 140 FNIPLVPFIGFRKYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFK------YDLTVVIE 213 (364)
T ss_pred cCCCCCCEEEEeccccccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHh------CCCCEEEE
Confidence 9999999877643 344443 3467899999999999999999999999999999999874 45789999
Q ss_pred eccCCcEEEEEEEEeCC-eeEEeccccc-cccccCCCCCCC--CCCc-eEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 010065 271 EFLEGEEASFFALVDGE-NAIPLESAQD-HKRVGDGDTGPN--TGGM-GAYSPAPVLTKELQSVVMESIILPTVKGMSAE 345 (519)
Q Consensus 271 e~I~G~E~sv~~l~dg~-~~~~~~~~~~-~~~~~~~~~~~~--~g~~-~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~ 345 (519)
+||+|+|++|.++.++. .+.+..+... ...+++|+.||. .+.. ...+|++ ++++..+++++.| .++++++
T Consensus 214 efI~GrEi~v~Vlg~~~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A----~~~~~aL 288 (364)
T PRK14570 214 KFIEAREIECSVIGNEQIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYA----FLTYKNL 288 (364)
T ss_pred CCcCCEEEEEEEECCCCceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHH----HHHHHHh
Confidence 99999999999996543 3344333332 225788888885 3443 4567998 9999999999887 4789999
Q ss_pred CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHh----CCCHHHHHHHHHhCC
Q 010065 346 GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRL----ESDLAEVLLAACRGE 402 (519)
Q Consensus 346 g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~----G~d~~~~~i~~~~g~ 402 (519)
||+ |+++|||+++++++++||+||||+||+|.+ +++|.+ |+++.+++..++...
T Consensus 289 g~~--G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~-S~~p~~~~~~G~~~~~li~~li~~a 346 (364)
T PRK14570 289 ELR--GMARIDFLIEKDTGLIYLNEINTIPGFTDI-SMFAKMCEHDGLQYKSLVDNLIDLA 346 (364)
T ss_pred CCc--ceEEEEEEEECCCCcEEEEEeeCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 998 999999999965338999999999999987 666654 999998888776544
|
|
| >PRK14568 vanB D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=367.02 Aligned_cols=307 Identities=19% Similarity=0.190 Sum_probs=232.3
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCc--cc----
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDAT--CI---- 128 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~--~v---- 128 (519)
+|||+|||||.|+||+||+.||++ ++.+|.+. +++++.++.+..+.|...... .+
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~------------------v~~~l~~~-~~~v~~i~i~~~g~~~~~~~~~~~~~~~~ 63 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIE------------------VARNLDTE-KYEPFYIGITKSGVWKLCDGPCAEWENGS 63 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHH------------------HHHhhccc-CCeEEEEEECCCCcEEeCCcccccccccc
Confidence 689999999999999999999987 56777655 788877765543333211100 00
Q ss_pred --c-CCCCC-CHHHHHHH----HHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH
Q 010065 129 --P-DLDVL-DGDAVISF----CRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC 195 (519)
Q Consensus 129 --~-~~d~~-d~~~l~~~----~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l 195 (519)
. .+.+. +...+... .+..++|+||| .+||+.+|++ |+.+|+||+|+++.++++++||..+|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~l---le~~gipy~G~~~~asai~~DK~~~k~~l 140 (343)
T PRK14568 64 CRPAVLSPDRKVHGLLVLEQGEYETIRLDVVFPVLHGKLGEDGAIQGL---LELSGIPYVGCDIQSSALCMDKSLAYIVA 140 (343)
T ss_pred ccceeeccccccccccccCccccccccCCEEEEcCCCCCCCchHHHHH---HHHcCCCccCCCHHHHHHHhCHHHHHHHH
Confidence 0 00000 00000000 12346999999 2899987776 99999999999999999999999999999
Q ss_pred HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC
Q 010065 196 DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG 275 (519)
Q Consensus 196 ~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G 275 (519)
+++|||+|++..+.+.++.. .+.++||+||||++++||.||.++++.+||.++++.++. ++..+|||+||+|
T Consensus 141 ~~~GIp~p~~~~~~~~~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~------~~~~vlVEe~I~G 212 (343)
T PRK14568 141 KNAGIATPAFWTVTADERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQ------YDSKVLIEEAVVG 212 (343)
T ss_pred HHcCcCcCCEEEEECCchhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh------cCCcEEEECCcCC
Confidence 99999999999987665432 357899999999999999999999999999999998864 4678999999999
Q ss_pred cEEEEEEEEeCCeeEE--eccccccccccCCCCCCC----CCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 010065 276 EEASFFALVDGENAIP--LESAQDHKRVGDGDTGPN----TGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKF 349 (519)
Q Consensus 276 ~E~sv~~l~dg~~~~~--~~~~~~~~~~~~~~~~~~----~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~ 349 (519)
+|++|.++.++..... +........+|++..++. .+....+.|+. ++++..+++++.+ .++++++|+.
T Consensus 213 ~E~sv~vl~~~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a----~~~~~~Lg~~- 286 (343)
T PRK14568 213 SEVGCAVLGNGADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETA----KAIYRALGCR- 286 (343)
T ss_pred EEEEEEEEcCCCCcceecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCC-
Confidence 9999999975432211 111222234666665543 23345678998 9999888888876 4688999987
Q ss_pred eeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 350 VGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 350 ~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
|++|+||+++++| ++||+|||++||+|.. ++++. .|+++.+++-+++.
T Consensus 287 -G~~rvDf~l~~~g-~~~llEINt~Pg~t~~-S~~p~~~~~~G~~~~~l~~~li~ 338 (343)
T PRK14568 287 -GLARVDMFLQEDG-TVVLNEVNTLPGFTSY-SRYPRMMAAAGIPLAELIDRLVS 338 (343)
T ss_pred -cEEEEEEEEeCCC-CEEEEEeeCCCCCCcc-CHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999887 8999999999999876 55543 49999998887764
|
|
| >PRK14572 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=364.13 Aligned_cols=307 Identities=18% Similarity=0.188 Sum_probs=236.1
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCC--ccccCCC
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDA--TCIPDLD 132 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~--~~v~~~d 132 (519)
++||+|||||.|+||+||+.||++ ++.+|.+. |++++.+..+..+.+..... ..+ ..+
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~------------------v~~~l~~~-~~~v~~i~~~~~~~~~~~~~~~~~~-~~~ 60 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCF------------------ICATLHTM-GHSVKPILLTPDGGWVVPTVYRPSI-PDE 60 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHH------------------HHHHHhhc-CCEEEEEEECCCCCEeecccccccc-ccc
Confidence 469999999999999999999987 67777665 88876665332222211000 000 000
Q ss_pred C--CCHHHHH-----------HHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHH
Q 010065 133 V--LDGDAVI-----------SFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNL 194 (519)
Q Consensus 133 ~--~d~~~l~-----------~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~ 194 (519)
. .+...+. ......++|++|+ .+||+.+|++ |+.+|+||+|+++.++.+++||..+|++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~hg~~gEdg~iq~~---le~~gipy~Gs~~~a~~i~~DK~~~k~~ 137 (347)
T PRK14572 61 SGNSEDLFLEEFQKANGVSEPADISQLDADIAFLGLHGGAGEDGRIQGF---LDTLGIPYTGSGVLASALAMDKTRANQI 137 (347)
T ss_pred cccccccccccccccccccccccccccCcCEEEEecCCCCCCCcHHHHH---HHHcCcCcCCCCHHHHHHHhCHHHHHHH
Confidence 0 0000011 1112246899998 2899987776 9999999999999999999999999999
Q ss_pred HHHcCCCCCCeeecCC------HHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEE
Q 010065 195 CDKYGIPTAKYKTFTD------PNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVI 268 (519)
Q Consensus 195 l~~~Gi~~p~~~~v~~------~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~l 268 (519)
|+++|||+|++..+.+ .+++.+..++++||+||||.++++|.||.++++.+||..+++.++. .++.+|
T Consensus 138 l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~------~~~~vl 211 (347)
T PRK14572 138 FLQSGQKVAPFFELEKLKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFE------SDSKVM 211 (347)
T ss_pred HHHcCCCCCCEEEEEccccccChHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCCEE
Confidence 9999999999988753 3344444567899999999999999999999999999999999864 457899
Q ss_pred EEeccCCcEEEEEEEEe---CC-eeEEec--cccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 010065 269 IEEFLEGEEASFFALVD---GE-NAIPLE--SAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGM 342 (519)
Q Consensus 269 vEe~I~G~E~sv~~l~d---g~-~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~ 342 (519)
|||||+|+|++|.++.+ |+ ..+.++ .......+++++.||+.++...++|++ ++++..+++++.+ .+++
T Consensus 212 VEefI~G~E~sv~vi~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a----~~~~ 286 (347)
T PRK14572 212 SQSFLSGTEVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELA----IRAH 286 (347)
T ss_pred EEcCcccEEEEEEEEeCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHH----HHHH
Confidence 99999999999999963 32 222222 233334678889999888888888998 8999888888877 4688
Q ss_pred HHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 343 SAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 343 ~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
+++|+. |++|+||+++++ ++|++|||++||++.. ++++. .|+++.+++..++.
T Consensus 287 ~~Lg~~--G~~rvD~~~~~~--~~~vlEiNt~PG~t~~-S~~p~~~~~~G~~~~~l~~~ii~ 343 (347)
T PRK14572 287 ESLGCK--GYSRTDFIIVDG--EPHILETNTLPGMTET-SLIPQQAKAAGINMEEVFTDLIE 343 (347)
T ss_pred HHhCCc--ceeEEEEEEECC--cEEEEeeeCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHH
Confidence 999987 999999999854 5999999999999987 66664 39999999888764
|
|
| >PRK14569 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=350.83 Aligned_cols=283 Identities=17% Similarity=0.127 Sum_probs=224.6
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCC
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDV 133 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~ 133 (519)
+++||+||+||.|+||+||+.||++ +..+|.+. |++++.++.+.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~------------------v~~aL~~~-g~~~~~~~~~~----------------- 45 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKA------------------VLDSLISQ-GYDAVGVDASG----------------- 45 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHH------------------HHHHHHHc-CCEEEEEcCCc-----------------
Confidence 3789999999999999999999876 68888776 99988774210
Q ss_pred CCHHHHHHHHHHcCCcEEEE---C--CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeec
Q 010065 134 LDGDAVISFCRKWSVGLVVV---G--PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF 208 (519)
Q Consensus 134 ~d~~~l~~~~~~~~id~Vi~---g--~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v 208 (519)
..++..+.+.++|+||+ | +|++.+++ .|+.+|+||+|++++++.+++||..+|++|+++|||+|++..+
T Consensus 46 ---~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~---~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~ 119 (296)
T PRK14569 46 ---KELVAKLLELKPDKCFVALHGEDGENGRVSA---LLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFL 119 (296)
T ss_pred ---hhHHHHhhccCCCEEEEeCCCCCCCChHHHH---HHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEE
Confidence 01122233457999998 2 67876655 4999999999999999999999999999999999999999877
Q ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCe
Q 010065 209 TDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGEN 288 (519)
Q Consensus 209 ~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~ 288 (519)
.+.. ...+.++||+||||..+++|.||.++++.+||.++++.++. .+.+|||+||+|+|++|.++.++.
T Consensus 120 ~~~~---~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~G~E~tv~vl~~~~- 188 (296)
T PRK14569 120 TDKL---VAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVTGKEITVAIVNDEV- 188 (296)
T ss_pred chhh---hhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEcccccEEEEEEEECCcC-
Confidence 6422 23467899999999999999999999999999999998753 257999999999999999984432
Q ss_pred eEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEE
Q 010065 289 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKL 368 (519)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~v 368 (519)
...........++++..+| .+.+....|+. ++++..+++++.+ .++++++|++ |++++||+++++| ++|+
T Consensus 189 -~~~~~i~~~~~~~~~~~k~-~~~~~~~~P~~-l~~~~~~~i~~~a----~~~~~~Lg~~--G~~rvD~~~~~~g-~~~v 258 (296)
T PRK14569 189 -YSSVWIEPQNEFYDYESKY-SGKSIYHSPSG-LCEQKELEVRQLA----KKAYDLLGCS--GHARVDFIYDDRG-NFYI 258 (296)
T ss_pred -cceEEEecCCCcCChhhcc-CCCcEEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCc--eEEEEEEEEcCCC-CEEE
Confidence 1111112223466666666 45566678988 8888777777766 5788999987 9999999999876 7999
Q ss_pred EEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 369 IEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 369 iEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
+|||||||++.. ++++. .|+++.+++..++.
T Consensus 259 lEIN~~Pg~t~~-s~~~~~~~~~G~~~~~li~~ii~ 293 (296)
T PRK14569 259 MEINSSPGMTDN-SLSPKSAAAEGVDFDSFVKRIIE 293 (296)
T ss_pred EEeeCCCCCCCc-CHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999876 55543 39999999988764
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=353.46 Aligned_cols=379 Identities=22% Similarity=0.267 Sum_probs=282.0
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC--CCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG--NAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAP 158 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~--~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~ 158 (519)
.+++|||+|+|.....++.++++. |++++.++.+ +++.. .++ ..+ ..|..|.+.+.++++++++|+|+++.|+.
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~-G~~v~~~~~~~~~~~~~-~ad-~~~-~~~~~d~~~l~~~~~~~~id~vi~~~e~~ 86 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRL-GVEVIAVDRYANAPAMQ-VAH-RSH-VIDMLDGDALRAVIEREKPDYIVPEIEAI 86 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCCCchHH-hhh-heE-ECCCCCHHHHHHHHHHhCCCEEEEeeCcC
Confidence 357999999996555677777766 9999888754 22222 111 122 45778899999999999999999988875
Q ss_pred hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCc
Q 010065 159 LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKG 237 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l-~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~G 237 (519)
.... ...+++.|+++. ++++++.+++||..+|+++ +++|||+|++..+++.+++.+++++++||+|+||..+++|+|
T Consensus 87 ~~~~-~~~l~~~g~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g~P~VvKP~~g~~s~G 164 (395)
T PRK09288 87 ATDA-LVELEKEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGYPCVVKPVMSSSGKG 164 (395)
T ss_pred CHHH-HHHHHhcCCeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcCCCEEEEeCCCcCCCC
Confidence 4444 345677799875 8999999999999999999 489999999999999999999889999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeCC-eeEEeccccccccccCCCCCCCCCCceE
Q 010065 238 VIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNTGGMGA 315 (519)
Q Consensus 238 V~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 315 (519)
|+++++.+|+.++++.+..... ..+..+||||||+ |.|+++.++++++ ....+.... +.. .++. ....
T Consensus 165 v~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~-~~~-~~~~------~~~~ 234 (395)
T PRK09288 165 QSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIG-HRQ-EDGD------YRES 234 (395)
T ss_pred eEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcc-cEE-ECCE------EEEE
Confidence 9999999999999998753210 0136899999999 6999999998544 333222221 111 0100 1234
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHH
Q 010065 316 YSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVL 395 (519)
Q Consensus 316 ~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~ 395 (519)
+.|+. ++++..+++.+.+ .+++.+++ ++|++|+||++++++ +|++|+|||+|++.++.+.. .|+|+++++
T Consensus 235 ~~p~~-l~~~~~~~i~~~~----~~~~~~L~--~~G~~~ve~~~~~~~--~~viEinpR~~~~~~~~~~~-~g~~~~~~~ 304 (395)
T PRK09288 235 WQPQP-MSPAALEEAQEIA----KKVTDALG--GRGLFGVELFVKGDE--VYFSEVSPRPHDTGMVTLIS-QNLSEFELH 304 (395)
T ss_pred ECCCC-CCHHHHHHHHHHH----HHHHHHcC--CeeEEEEEEEEeCCe--EEEEEecCCCCCCcceeeee-cccCHHHHH
Confidence 56887 8888888877765 46778888 459999999999876 99999999999887654443 399999999
Q ss_pred HHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEE
Q 010065 396 LAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTA 475 (519)
Q Consensus 396 i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~ 475 (519)
++.++|... ..+.+....++.+++...+++ ...+.+++++. ..+++.+...+.. ..+.++|+|+|++
T Consensus 305 ~~~~lG~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~-~~~g~~~~~~~k~------~~~~~~~lG~v~~ 371 (395)
T PRK09288 305 ARAILGLPI-PDIRLYSPAASAVILAEGESA-----NPSFDGLAEAL-AVPGTDVRLFGKP------EIRGGRRMGVALA 371 (395)
T ss_pred HHHHcCCCC-CcccccCCceeEEEecccccc-----ccchhhHHHHh-cCCCCEEEEecCC------CCCCCCeeEEEEe
Confidence 999999632 233333445666776654444 12344555432 2355554443321 1246789999999
Q ss_pred ecCCHHHHHHHHHHHhhccccCC
Q 010065 476 KGKDVEEAQDRAYLAVEEINWPG 498 (519)
Q Consensus 476 ~g~t~~ea~~~a~~~~~~i~~~g 498 (519)
.|+|.++|+++++++.+.|++.|
T Consensus 372 ~g~~~~~a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 372 TGEDVEEAREKAKEAASKVKVVG 394 (395)
T ss_pred ecCCHHHHHHHHHHHHhheeecc
Confidence 99999999999999999999876
|
|
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=356.21 Aligned_cols=410 Identities=19% Similarity=0.187 Sum_probs=287.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-C-C-CCcCCCCCcc-cc-C---CCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-N-A-GISNSGDATC-IP-D---LDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~-~-~~~~~~~~~~-v~-~---~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.+||||+|+|..+..+++++++. |++++.++++ + . .....++... +. . -++.|.+.++++|+++++|+|+|
T Consensus 2 ~kkili~g~g~~~~~~~~aa~~l-G~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (449)
T TIGR00514 2 LDKILIANRGEIALRILRACKEL-GIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP 80 (449)
T ss_pred cceEEEeCCCHHHHHHHHHHHHc-CCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence 46999999998888888888876 9999998653 2 1 1111222111 10 0 13456789999999999999999
Q ss_pred CC----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEE
Q 010065 154 GP----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~Vv 227 (519)
+. |+.. +++.++++|++++|++++++.+++||..++++|+++|||+|++. .+.+.+++.+++++++||+|+
T Consensus 81 g~g~~se~~~---~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~Pvvv 157 (449)
T TIGR00514 81 GYGFLSENAN---FAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVII 157 (449)
T ss_pred CCCccccCHH---HHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEE
Confidence 53 5553 56679999999999999999999999999999999999999874 677889988888999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCCC
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~ 305 (519)
||..++||+||+++++.+|+.++++.+.....-......++|||||+| +|+++.++.|+ +.+..+..... ....
T Consensus 158 KP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~--~~~~-- 233 (449)
T TIGR00514 158 KATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDC--SIQR-- 233 (449)
T ss_pred EeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEecccc--Ccee--
Confidence 999999999999999999999999876532100012467999999998 89999999864 33443322110 0000
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH
Q 010065 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385 (519)
Q Consensus 306 ~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~ 385 (519)
.........|+..++++..+++++.+ .+++.++|+. |++|+||+++++| ++||+|||||++++.. ....
T Consensus 234 ---~~~~~~~~~p~~~l~~~~~~~i~~~a----~~~~~~lg~~--G~~~vef~~~~~g-~~~viEiNpR~~~~~~-~~~~ 302 (449)
T TIGR00514 234 ---RHQKLLEEAPSPALTPELRRKMGDAA----VKAAVSIGYR--GAGTVEFLLDKNG-EFYFMEMNTRIQVEHP-VTEM 302 (449)
T ss_pred ---cccceEEECCCCCCCHHHHHHHHHHH----HHHHHHCCCc--ceEEEEEEEeCCC-CEEEEEEECCCCCCcc-eeeh
Confidence 00011223465558888888888876 4677888875 9999999999776 6999999999987643 2334
Q ss_pred HhCCCHHHHHHHHHhCCCCCCCc-cc-CCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEEeeeeecCCC
Q 010065 386 RLESDLAEVLLAACRGELTGVTL-NW-SPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFHAGTALDADG 461 (519)
Q Consensus 386 ~~G~d~~~~~i~~~~g~~~~~~~-~~-~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (519)
.+|+|+.++++++++|....... .. .+++++..++..+..-.. +..+ .+..+.. ...+++++... . ..|
T Consensus 303 ~tGvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g-~~~~~~~--~~~~gv~~~~~-~---~~G 375 (449)
T TIGR00514 303 ITGVDLIKEQIRIAAGEPLSLKQEDVVVRGHAIECRINAEDPIKTFLPSPG-RITRYLP--PGGPGVRWDSH-V---YSG 375 (449)
T ss_pred hcCCcHHHHHHHHHCCCCCCCccccCCCceEEEEEEeeccCCCCCeeeCCC-EEEEEEc--CCCCCEeeccC-c---cCC
Confidence 57999999999999998544321 11 235666666555431011 1111 1211110 01123332110 1 123
Q ss_pred cEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeecccccccccccccccc
Q 010065 462 NFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 462 ~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~ 517 (519)
.... ..+|+|+|+++|+|++||.+++.++++.++++| .+.|+=+.+++|...++-|
T Consensus 376 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~~~~~~t 438 (449)
T TIGR00514 376 YTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDGIKTTIPFHQRILEDENFQHGGTNI 438 (449)
T ss_pred CEeCccccccceEEEEEcCCHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhcChhhcCCceee
Confidence 2221 336999999999999999999999999999998 2455555667777666554
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=346.36 Aligned_cols=374 Identities=20% Similarity=0.221 Sum_probs=278.4
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
||+|||+|.....+++++++. |++++.++++.... ...++ ..+ ..+..|.+.+.++++++++|+|++..|+.....
T Consensus 1 kililG~g~~~~~l~~aa~~~-G~~v~~~d~~~~~~~~~~ad-~~~-~~~~~d~~~l~~~~~~~~id~v~~~~e~v~~~~ 77 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL-GVEVIAVDRYANAPAMQVAH-RSY-VINMLDGDALRAVIEREKPDYIVPEIEAIATDA 77 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCCCCchhhhCc-eEE-EcCCCCHHHHHHHHHHhCCCEEEeccCccCHHH
Confidence 689999997777888888776 99999887652221 11222 222 357788999999999999999999877654333
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEe
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVA 241 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l-~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v 241 (519)
...+++.|+|+. ++++++.+++||..+++++ +++|||+|++..+++.+++.+++++++||+|+||.++++|+||.++
T Consensus 78 -~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v 155 (380)
T TIGR01142 78 -LFELEKEGYFVV-PNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVV 155 (380)
T ss_pred -HHHHHhcCCeeC-CCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEE
Confidence 456788998864 8999999999999999985 8999999999999999999888899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE--eCCeeEEeccccccccccCCCCCCCCCCceEEec
Q 010065 242 MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV--DGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSP 318 (519)
Q Consensus 242 ~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~--dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P 318 (519)
++.+|+.++++.+..... ..++.+||||||+| .|+++.+++ ||+... ........ . +..+ ..++.|
T Consensus 156 ~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~-~~~~~~~~--~--~~~~----~~~~~p 224 (380)
T TIGR01142 156 RGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTF-CAPIGHRQ--I--DGDY----HESWQP 224 (380)
T ss_pred CCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEE-ecCcceEE--e--CCee----EEEECC
Confidence 999999999988753210 12468999999997 899998886 444222 21111110 0 1111 134678
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 319 APVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 319 ~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
+. ++++..+++.+.+ .+++.++|+. |++|+||++++++ +||+|||||||++.++.+.. .|+|++++++++
T Consensus 225 ~~-l~~~~~~~i~~~a----~~~~~~l~~~--G~~~ie~~~~~~~--~~viEinpR~~~~~~~~~~~-~g~~~~~~~~r~ 294 (380)
T TIGR01142 225 QE-MSEKALEEAQRIA----KRITDALGGY--GLFGVELFVKGDE--VIFSEVSPRPHDTGMVTLIS-QGLSEFALHVRA 294 (380)
T ss_pred CC-CCHHHHHHHHHHH----HHHHHHcCCc--ceEEEEEEEECCc--EEEEEeecCCCCCceEEeee-cCCCHHHHHHHH
Confidence 87 8988888887766 4688889864 9999999999776 99999999999887754443 399999999999
Q ss_pred HhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecC
Q 010065 399 CRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGK 478 (519)
Q Consensus 399 ~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~ 478 (519)
++|..... ......+++.+++... .+. ...+.+++++.+ .+++.++.++.. | ...++|+|+|++.|+
T Consensus 295 ~~G~~~~~-~~~~~~~~~~~i~~~~--~g~---~~~~~~~~~~~~-~~~~~~~~~~k~----~--~~~~~~~G~v~~~~~ 361 (380)
T TIGR01142 295 ILGLPIPG-IPQLGPAASAVIKAKV--TGY---SPAFRGLEKALS-VPNTQVRLFGKP----E--AYVGRRLGVALATAK 361 (380)
T ss_pred HcCCCCCC-ccccCCceEEEEEccc--ccc---cchhhHHHHHHc-CCCCEEEECCCC----c--CCCCCcCEEEEEecC
Confidence 99974332 2222235555655432 121 123455555433 345555554322 2 246699999999999
Q ss_pred CHHHHHHHHHHHhhcccc
Q 010065 479 DVEEAQDRAYLAVEEINW 496 (519)
Q Consensus 479 t~~ea~~~a~~~~~~i~~ 496 (519)
|.+++.++++++.+.|++
T Consensus 362 s~~~~~~~~~~~~~~i~~ 379 (380)
T TIGR01142 362 SVEAARERAEEVAHAVEV 379 (380)
T ss_pred CHHHHHHHHHHHHhhccC
Confidence 999999999999998876
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=347.66 Aligned_cols=409 Identities=18% Similarity=0.183 Sum_probs=285.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC-CC-cCCCCCccccCC-------CCCCHHHHHHHHHHcCCcEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA-GI-SNSGDATCIPDL-------DVLDGDAVISFCRKWSVGLV 151 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~-~~-~~~~~~~~v~~~-------d~~d~~~l~~~~~~~~id~V 151 (519)
.+||||+|.|..+.++++++++. |++++.+... |. .. ...++ ..+ .+ +..|.+.++++|+++++|+|
T Consensus 4 ~k~ili~~~g~~~~~~~~~~~~~-G~~~v~~~~~~d~~~~~~~~ad-~~~-~~~~~~~~~~y~~~~~l~~~~~~~~~D~i 80 (445)
T PRK08462 4 IKRILIANRGEIALRAIRTIQEM-GKEAIAIYSTADKDALYLKYAD-AKI-CIGGAKSSESYLNIPAIISAAEIFEADAI 80 (445)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCCEEEEechhhcCCchhhhCC-EEE-EeCCCchhcccCCHHHHHHHHHHcCCCEE
Confidence 57999999998888889998877 9999988532 22 11 11121 111 12 45678999999999999999
Q ss_pred EECCCh-hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEEE
Q 010065 152 VVGPEA-PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 152 i~g~E~-~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~VvK 228 (519)
+|+.+. .....+++.++.+|++++|++++++.+++||..||++|+++|||+|++. .+.+.+++.+++++++||+|+|
T Consensus 81 ~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvK 160 (445)
T PRK08462 81 FPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILK 160 (445)
T ss_pred EECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEE
Confidence 996322 1113466779999999999999999999999999999999999999864 5778899988899999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~ 304 (519)
|.+|+||+|++++++.+||.++++.+... ..+ .++.++||+||+| +|+++.++.++ +.+..+...... ....
T Consensus 161 P~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~--~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~--~~~~ 236 (445)
T PRK08462 161 AAAGGGGRGMRVVEDESDLENLYLAAESEALSAF--GDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCS--LQRR 236 (445)
T ss_pred eCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhcc--CCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEecccc--ceec
Confidence 99999999999999999999988765321 112 2357999999996 89999999754 234433221100 0000
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
..++ ....|+..++++..+++.+.+ .++++++|+. |++++||++++++ ++||+|||||++++.. ...
T Consensus 237 ~~~~-----~~~~p~~~l~~~~~~~i~~~a----~~~~~alg~~--G~~~ve~~~~~~g-~~~viEiNpR~~~~~~-~~~ 303 (445)
T PRK08462 237 HQKL-----IEESPAVVLDEKTRERLHETA----IKAAKAIGYE--GAGTFEFLLDSNL-DFYFMEMNTRLQVEHT-VSE 303 (445)
T ss_pred ccce-----EEEcCCCCCCHHHHHHHHHHH----HHHHHHcCCC--CcceEEEEEeCCC-CEEEEEEECCcCcCcc-eeh
Confidence 0111 123466558888888888776 4688899987 9999999999876 6999999999977543 223
Q ss_pred HHhCCCHHHHHHHHHhCCCCCCCc-ccCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEEeeeeecCCC
Q 010065 385 VRLESDLAEVLLAACRGELTGVTL-NWSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFHAGTALDADG 461 (519)
Q Consensus 385 ~~~G~d~~~~~i~~~~g~~~~~~~-~~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (519)
..+|+|+.++++++++|....... ....++++...+.... |.. +..+ .+..+... ....+++... . ..|
T Consensus 304 ~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~~a~~~~~~~~~-~~~~~p~~G-~l~~~~~~--~~~~~r~~~~-~---~~g 375 (445)
T PRK08462 304 MVSGLDLIEWMIKIAEGEELPSQESIKLKGHAIECRITAED-PKKFYPSPG-KITKWIAP--GGRNVRMDSH-A---YAG 375 (445)
T ss_pred hhhCCCHHHHHHHHHCCCCcccccccCCceeEEEEEeccCC-CCceecccC-EEeEEEcC--CCCCEEEccC-c---CCC
Confidence 446999999999999998433211 1123455554443321 110 0011 11111100 0012222210 0 112
Q ss_pred cEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeeccccccccccccccccC
Q 010065 462 NFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 462 ~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~~ 518 (519)
... ...+|+|+|+++|+|.++|.+++.++++.+++.| .+.|+=+.+++|...++-|+
T Consensus 376 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (445)
T PRK08462 376 YVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEGIKTTIPFHLEMMENADFINNKYDTK 439 (445)
T ss_pred CEeChhhccCccEEEEEcCCHHHHHHHHHHHHHhcEEECccCCHHHHHHHhcChhhcCCceech
Confidence 111 2357999999999999999999999999999998 35666667788877766664
|
|
| >PRK14571 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=336.22 Aligned_cols=281 Identities=17% Similarity=0.160 Sum_probs=222.7
Q ss_pred eeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCC
Q 010065 56 FFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLD 135 (519)
Q Consensus 56 ~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d 135 (519)
|||+|||||.|+||+||+.|+.. +..+|.+. |+++..++.+..
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~------------------i~~al~~~-g~~~~~i~~~~~------------------ 43 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGER------------------VKKALEKL-GYEVTVFDVDED------------------ 43 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHH------------------HHHHHHHc-CCeEEEEccCch------------------
Confidence 79999999999999999999876 68888766 998877742210
Q ss_pred HHHHHHHHHHcCCcEEEE---C--CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCC
Q 010065 136 GDAVISFCRKWSVGLVVV---G--PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTD 210 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~---g--~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~ 210 (519)
.+..+.+..++|+||+ | +|++.++++ ++.+|+|++|+++.++.+++||..++++++ .|||+|++..+.+
T Consensus 44 --~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~---le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~~~~ 117 (299)
T PRK14571 44 --FLKKVDQLKSFDVVFNVLHGTFGEDGTLQAI---LDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVEIKE 117 (299)
T ss_pred --HHHHhhhccCCCEEEEeCCCCCCCccHHHHH---HHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEEEec
Confidence 0111112246899998 2 578766555 999999999999999999999999999998 5899999988865
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC--e
Q 010065 211 PNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE--N 288 (519)
Q Consensus 211 ~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~--~ 288 (519)
.. ..+.++||+|+||..++||.||.+++|.+|+.++++.++. ....+||||||+|+|++|.++.+++ .
T Consensus 118 ~~----~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~------~~~~vlVEeyI~G~E~sv~vl~~~~~~~ 187 (299)
T PRK14571 118 FM----KTSPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLP------RYGSVIVQEYIPGREMTVSILETEKGFE 187 (299)
T ss_pred hh----hhhhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHh------hCCcEEEEccccceEEEEEEEcCCCCee
Confidence 32 2356899999999999999999999999999999988763 3468999999999999999998654 2
Q ss_pred eEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEE
Q 010065 289 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKL 368 (519)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~v 368 (519)
++++........++++..++..+......|++ ++++..+++++.+ .+++.++|+. |++++||+++++ ++||
T Consensus 188 vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p~~-l~~~~~~~i~~~a----~~~~~~lg~~--g~~rvD~~~~~~--~~~v 258 (299)
T PRK14571 188 VLPILELRPKRRFYDYVAKYTKGETEFILPAP-LNPEEERLVKETA----LKAFVEAGCR--GFGRVDGIFSDG--RFYF 258 (299)
T ss_pred eeceEEEecCCCccccccccCCCCeeEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCC--ceEEEEEEEECC--cEEE
Confidence 33333232333466777778767666677988 8999888888876 4688999987 999999999864 5999
Q ss_pred EEEeCCCCCCchHHHHHH----hCCCHHHHHHHHH
Q 010065 369 IEYNVRFGDPECQVLMVR----LESDLAEVLLAAC 399 (519)
Q Consensus 369 iEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~ 399 (519)
+|||++||++.. +.++. .|+++.+++..++
T Consensus 259 iEiN~~Pg~~~~-s~~~~~~~~~G~~~~~li~~ii 292 (299)
T PRK14571 259 LEINTVPGLTEL-SDLPASAKAGGIEFEELVDIII 292 (299)
T ss_pred EEeeCCCCCCcc-CHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999876 54443 3999999776654
|
|
| >PRK05586 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=346.08 Aligned_cols=409 Identities=20% Similarity=0.197 Sum_probs=287.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC--CCcCCCCCccc-cCC----CCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA--GISNSGDATCI-PDL----DVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~--~~~~~~~~~~v-~~~----d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.+||||+|+|..+..+++++++. |++++.+... +. .....++...+ ... ...|.+.++++|++.++|+|+|
T Consensus 2 ~kkvli~g~G~~~~~~~~aa~~l-G~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p 80 (447)
T PRK05586 2 FKKILIANRGEIAVRIIRACREM-GIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHP 80 (447)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-CCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEc
Confidence 36999999998888888888876 9998777422 21 11111221111 011 1225688999999999999998
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe--eecCCHHHHHHHHHHhCCCEEE
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY--KTFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~--~~v~~~~~~~~~~~~~g~P~Vv 227 (519)
+ +|+. .++..++..|++++|++++++.+++||..+|++++++|||+|++ ..+.+.+++.+++++++||+||
T Consensus 81 ~~~~~~E~~---~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvv 157 (447)
T PRK05586 81 GFGFLSENS---KFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMV 157 (447)
T ss_pred CccccccCH---HHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEE
Confidence 5 5665 45666899999999999999999999999999999999999997 4678899998888999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhhc--cCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccC
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLKN--AFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGD 303 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~~--~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~ 303 (519)
||.+++||+|++++++.+|+.++++.+.... .+ .++.++||+||+| +|+++.+++|+ +++..+...... ..
T Consensus 158 KP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~--~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~--~~- 232 (447)
T PRK05586 158 KASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAF--GDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCS--LQ- 232 (447)
T ss_pred EECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhc--CCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecc--eE-
Confidence 9999999999999999999999998765321 12 1367999999998 89999999864 344444321100 00
Q ss_pred CCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHH
Q 010065 304 GDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVL 383 (519)
Q Consensus 304 ~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~ 383 (519)
.+........|++.+++++.+++.+.+ .++++++|+. |++++||+++++| ++||+|||||+|++.. ..
T Consensus 233 ----~~~~~~~~~~p~~~l~~~~~~~l~~~a----~~i~~aLg~~--g~~~vEf~~~~~g-~~~~iEvNpR~~~~~~-~t 300 (447)
T PRK05586 233 ----RRNQKVLEEAPSPVMTEELRKKMGEIA----VKAAKAVNYK--NAGTIEFLLDKDG-NFYFMEMNTRIQVEHP-IT 300 (447)
T ss_pred ----ecccceEEEcCCCCCCHHHHHHHHHHH----HHHHHHcCCc--ceeEEEEEEcCCC-CEEEEEEECCCCCCcc-ce
Confidence 000112334576558888888887776 4677888876 9999999999876 8999999999987654 33
Q ss_pred HHHhCCCHHHHHHHHHhCCCCCCC-cc-cCCCcEEEEEEecCCCCC--CCCCCcccccchhhhccCCCeEEEEeeeeecC
Q 010065 384 MVRLESDLAEVLLAACRGELTGVT-LN-WSPGSAMVVVMASKGYPG--SYEKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459 (519)
Q Consensus 384 ~~~~G~d~~~~~i~~~~g~~~~~~-~~-~~~~~a~~~~l~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 459 (519)
...+|+|++++++++++|...... .. ...++++...+..+.-.. .+..| .+..+..- ...++++... . .
T Consensus 301 ~~~tGid~~~~~i~~a~G~~l~~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G-~~~~~~~~--~~~~vr~~~~-~---~ 373 (447)
T PRK05586 301 EMITGVDLVKEQIKIAYGEKLSIKQEDIKINGHSIECRINAEDPKNGFMPCPG-KIEELYIP--GGLGVRVDSA-V---Y 373 (447)
T ss_pred ehhhCCCHHHHHHHHHcCCCCCCcccccCcCceEEEEEeeccCcccCccCCCC-EEEEEEcC--CCCCeEeecc-c---c
Confidence 345799999999999999843321 11 123567776655543111 11111 22222110 0122332210 0 1
Q ss_pred CCcE--EecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eeccccccccccccccccC
Q 010065 460 DGNF--IATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 460 ~g~~--~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~~~~ 518 (519)
.|.. ....+++|+|+++|+|.++|++++.++++.+.+.|. +.|+=+.++.|....+.|+
T Consensus 374 ~g~~v~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~t~ 439 (447)
T PRK05586 374 SGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEGVNTNIDFQFIILEDEEFIKGTYDTS 439 (447)
T ss_pred CCCccCCccCchhheeEEEcCCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCccccH
Confidence 1211 123469999999999999999999999999999992 4455555677766665553
|
|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=343.53 Aligned_cols=409 Identities=20% Similarity=0.219 Sum_probs=289.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC--CCcCCCCCcc-cc----CCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA--GISNSGDATC-IP----DLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~--~~~~~~~~~~-v~----~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.+||||+|.|.....+++++++. |++++.+.++ +. .....++... +. .-+..|.+.+++++++.++|+|+|
T Consensus 5 ~~~vLi~~~geia~~ii~aa~~l-G~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~p 83 (467)
T PRK12833 5 IRKVLVANRGEIAVRIIRAAREL-GMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHP 83 (467)
T ss_pred CcEEEEECCcHHHHHHHHHHHHc-CCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEE
Confidence 47999999998777888888776 9999877532 11 1111121111 10 114567899999999999999999
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEE
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~Vv 227 (519)
+ +|.. .+++.++..|++++|++++++.++.||..+|++++++|||+|++. .+.+.+++.++++++|||+|+
T Consensus 84 g~g~lsE~~---~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvv 160 (467)
T PRK12833 84 GYGFLSENA---AFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMI 160 (467)
T ss_pred CCCccccCH---HHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEE
Confidence 5 3554 345668999999999999999999999999999999999999885 788999999999999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCCeeEEeccccccccccCC
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~~~~~~~~~~~~~~ 304 (519)
||..++||+|++++++.+||.++++.+... ..+ .++.++||+||+| +|+++.++.|++.++.+...... ....
T Consensus 161 Kp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~--~~~~vlvEefi~~~~ei~v~v~~dg~~~~~~~~~~~~--~~r~ 236 (467)
T PRK12833 161 KAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAF--GDGGVYLERFIARARHIEVQILGDGERVVHLFERECS--LQRR 236 (467)
T ss_pred EECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhc--CCCcEEEEecCCCCEEEEEEEEeCCCcEEEEEEeecc--cccC
Confidence 999999999999999999999998876432 122 2467999999995 99999999988654443321100 0000
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
.. ......|+..++++..+++.+.+ .++++++|+. |++++||+++++++++||||||||++++.. ...
T Consensus 237 ~~-----ki~e~~p~~~l~~~~~~~l~~~a----~~~~~alg~~--G~~~vEf~~~~~~g~~~~iEvNpR~~~~~~-~te 304 (467)
T PRK12833 237 RQ-----KILEEAPSPSLTPAQRDALCASA----VRLARQVGYR--GAGTLEYLFDDARGEFYFIEMNTRIQVEHP-VTE 304 (467)
T ss_pred Cc-----cEEEECCCCCCCHHHHHHHHHHH----HHHHHHcCCc--CcceEEEEEecCCCCEEEEEEECCCCcchh-hhH
Confidence 00 11234465458888888888776 4677888876 999999999864337999999999987543 333
Q ss_pred HHhCCCHHHHHHHHHhCCCCCCCc--ccCCCcEEEEEEecCCCCCC---CCCCcccccchhhhccCCCeEEEEeeeeecC
Q 010065 385 VRLESDLAEVLLAACRGELTGVTL--NWSPGSAMVVVMASKGYPGS---YEKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459 (519)
Q Consensus 385 ~~~G~d~~~~~i~~~~g~~~~~~~--~~~~~~a~~~~l~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 459 (519)
..+|+|+.+++++++.|....... ....++++...+..+. |.. +..+ .+..+... ..+++++-. .. .
T Consensus 305 ~~tGvdl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~~~p~~g-~i~~~~~~--~~~gvr~d~-~~---~ 376 (467)
T PRK12833 305 AITGIDLVQEMLRIADGEPLRFAQGDIALRGAALECRINAED-PLRDFFPNPG-RIDALVWP--QGPGVRVDS-LL---Y 376 (467)
T ss_pred HHhCCCHHHHHHHHHCCCCCCCCccccCcceEEEEEEEeccc-CCCCcccCCC-EEEEEEcC--CCCCeEEec-ce---e
Confidence 457999999999999998544221 1223667766665432 110 1111 12222110 113333211 11 1
Q ss_pred CCcEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeeccccccccccccccccC
Q 010065 460 DGNFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 460 ~g~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~~ 518 (519)
.|... ...+++++|+++|+|+++|++++.++++.+++.| .|.++=+.++.|...++.|+
T Consensus 377 ~G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~ 442 (467)
T PRK12833 377 PGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRIDGMKTTAPLHRALLADADVRAGRFHTN 442 (467)
T ss_pred CcCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhcEeECccCCHHHHHHHhcChhhcCCCcccH
Confidence 12222 1346899999999999999999999999999998 35666666777766666553
|
|
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=344.82 Aligned_cols=408 Identities=22% Similarity=0.217 Sum_probs=284.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC-CC-cCCCCCccc-cC----CCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA-GI-SNSGDATCI-PD----LDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~-~~-~~~~~~~~v-~~----~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
++||||+|+|.....+++++++. |++++.++++ +. .. ...++...+ .+ -+..|.+.++++|+++++|+|+|
T Consensus 2 ~k~iLi~g~g~~a~~i~~aa~~~-G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 2 FDKILIANRGEIALRIIRACKEL-GIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred cceEEEECCCHHHHHHHHHHHHc-CCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 47999999998778888888877 9999888543 21 11 111221111 01 13346889999999999999999
Q ss_pred CC----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe--eecCCHHHHHHHHHHhCCCEEE
Q 010065 154 GP----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY--KTFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~--~~v~~~~~~~~~~~~~g~P~Vv 227 (519)
+. |+. .+++.++.+|+|++|++++++.+++||..|+++++++|||+|++ ..+++.+++.+++++++||+|+
T Consensus 81 ~~~~~~e~~---~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~Pvvv 157 (451)
T PRK08591 81 GYGFLSENA---DFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVII 157 (451)
T ss_pred CCCccccCH---HHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEE
Confidence 63 554 35667999999999999999999999999999999999999987 4678999999999999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhhc--cCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccC
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLKN--AFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGD 303 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~~--~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~ 303 (519)
||..++||+|++++++.+|+.++++.+.... .+ .++.++|||||+| +|+++.+++|+. .+..+..... ....
T Consensus 158 KP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~--~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~--~~~~ 233 (451)
T PRK08591 158 KATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAF--GNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDC--SLQR 233 (451)
T ss_pred EECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccc--ccee
Confidence 9999999999999999999999998865321 12 2467999999997 799999998763 4443321110 0000
Q ss_pred CCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHH
Q 010065 304 GDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVL 383 (519)
Q Consensus 304 ~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~ 383 (519)
... ......|+..++++..+++.+.+ .++++++|+. |++|+||+++++| ++||+|||||++++.. ..
T Consensus 234 ~~~-----~~~~~~p~~~l~~~~~~~l~~~a----~~~~~~lg~~--G~~~vEf~~~~~g-~~~viEINpR~~~~~~-~~ 300 (451)
T PRK08591 234 RHQ-----KVLEEAPSPAITEELRRKIGEAA----VKAAKAIGYR--GAGTIEFLYEKNG-EFYFIEMNTRIQVEHP-VT 300 (451)
T ss_pred cce-----eEEEECCCCCCCHHHHHHHHHHH----HHHHHHcCCC--ceEEEEEEEcCCC-CEEEEEEECCCCccch-hh
Confidence 000 01223455448888888888766 4688889976 9999999999766 7999999999987643 33
Q ss_pred HHHhCCCHHHHHHHHHhCCCCCCCc--ccCCCcEEEEEEecCC--CCCCCCCCcccccchhhhccCCCeEEEEeeeeecC
Q 010065 384 MVRLESDLAEVLLAACRGELTGVTL--NWSPGSAMVVVMASKG--YPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459 (519)
Q Consensus 384 ~~~~G~d~~~~~i~~~~g~~~~~~~--~~~~~~a~~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 459 (519)
...+|+|+.++++++++|....... ....++++...+..+. +.-.+..+ .+..+.. . ..+++.+.. .. .
T Consensus 301 ~~~~Gvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g-~~~~~~~-~-~~~~v~~~~-~~---~ 373 (451)
T PRK08591 301 EMITGVDLVKEQIRIAAGEPLSIKQEDIVFRGHAIECRINAEDPAKNFMPSPG-KITRYHP-P-GGPGVRVDS-AV---Y 373 (451)
T ss_pred hhhhCCCHHHHHHHHHCCCCCCCcccccCcCceEEEEEEeeecCccCcccCCC-EeeEEEc-C-CCCCeeecc-cc---c
Confidence 3457999999999999998443211 1123566665543322 10011111 1222110 0 011222111 01 1
Q ss_pred CCcE--EecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeecccccccccccccccc
Q 010065 460 DGNF--IATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 460 ~g~~--~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~ 517 (519)
.|.. ..+.+++|+|+++|+|.++|.+++.++++.+++.| .+.++=+..+.|.+.++-|
T Consensus 374 ~g~~v~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t 438 (451)
T PRK08591 374 TGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNI 438 (451)
T ss_pred CCCCcCccccCcceEEEEEcCCHHHHHHHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhCCCccc
Confidence 1211 12446999999999999999999999999999998 2444445566666655544
|
|
| >PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=340.43 Aligned_cols=395 Identities=21% Similarity=0.212 Sum_probs=272.5
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCCCCCccccC-------CCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNSGDATCIPD-------LDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~~~~~v~~-------~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
+||||+|+|..+..+++++++. |++++.++++... ......++.... -+..|.+.++++++++++|+|+|+
T Consensus 3 ~~ililg~g~~~~~~~~~a~~l-G~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p~ 81 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKL-GIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPG 81 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHc-CCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEeC
Confidence 7899999998888888888776 9999988754221 111111111101 144578999999999999999996
Q ss_pred ----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe--eecCCHHHHHHHHHHhCCCEEEE
Q 010065 155 ----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY--KTFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 155 ----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~--~~v~~~~~~~~~~~~~g~P~VvK 228 (519)
+|.+ .+++.++.+|++++|++.+++.+++||..++++|+++|||+|++ ..+.+.+++.++++.++||+|+|
T Consensus 82 ~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvK 158 (450)
T PRK06111 82 YGLLSENA---SFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLK 158 (450)
T ss_pred CCccccCH---HHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEE
Confidence 4664 45677999999999999999999999999999999999999986 55688888888889999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~ 304 (519)
|..++||+||.++++.+|+.++++.+... ..+ .+..++|||||+| +|+++.++.++ +....+..... .....
T Consensus 159 P~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~--~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~--~~~~~ 234 (450)
T PRK06111 159 ASAGGGGIGMQLVETEQELTKAFESNKKRAANFF--GNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWEREC--SVQRR 234 (450)
T ss_pred eCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhc--CCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecc--ccccc
Confidence 99999999999999999999999875421 111 2468999999998 78899988754 22332221110 00000
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
. +. .....|++.+++++.+++.+.+ .+++.++|+. |++|+||+++++| ++||+|||||++++.. .+.
T Consensus 235 ~-~~----~~~~~p~~~~~~~~~~~i~~~a----~~~~~~lg~~--g~~~ve~~~~~~g-~~~viEiN~R~~~~~~-~~~ 301 (450)
T PRK06111 235 H-QK----VIEEAPSPFLDEETRKAMGERA----VQAAKAIGYT--NAGTIEFLVDEQK-NFYFLEMNTRLQVEHP-VTE 301 (450)
T ss_pred c-cc----eEEecCCCCCCHHHHHHHHHHH----HHHHHHcCCC--CceeEEEEEcCCC-CEEEEEEECCcCCcch-hhH
Confidence 0 00 1112355547777777777766 4677888877 9999999999876 7999999999977643 344
Q ss_pred HHhCCCHHHHHHHHHhCCCCCCCcc--cCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCc
Q 010065 385 VRLESDLAEVLLAACRGELTGVTLN--WSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGN 462 (519)
Q Consensus 385 ~~~G~d~~~~~i~~~~g~~~~~~~~--~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 462 (519)
..+|+|+.++++++++|...+.... ...+.++...+.+..+.........+..++. . ...++.+. ... ..|.
T Consensus 302 ~~~Gvd~~~~~i~~~~G~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~G~~~~i~~-~-~~~~~~~~---~~~-~~G~ 375 (450)
T PRK06111 302 EITGIDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYAEDPKTFFPSPGKITDLTL-P-GGEGVRHD---HAV-ENGV 375 (450)
T ss_pred HHhCcCHHHHHHHHhcCCCCCCccccCCcCceEEEEEEecCCCCCcccCCCeeCeEec-C-CCCCEEEE---ecc-cCCC
Confidence 4579999999999999974332211 1223344444333221111100001111110 0 01122211 101 1222
Q ss_pred EE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCeeeccccc
Q 010065 463 FI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIG 506 (519)
Q Consensus 463 ~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig 506 (519)
.. ...+|+|+|++.|+|.++|+++++++++.|+++| .++++.
T Consensus 376 ~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~~g--~~~~~~ 419 (450)
T PRK06111 376 TVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEG--IKTNIP 419 (450)
T ss_pred EeChhhcccceEEEEEeCCHHHHHHHHHHHHHhCEEeC--ccCCHH
Confidence 11 1246889999999999999999999999999999 455544
|
|
| >PRK07178 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=341.31 Aligned_cols=407 Identities=18% Similarity=0.188 Sum_probs=286.6
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCCcCCCCCcc---cc---CCCCCCHHHHHHHHHHcCCcEEEEC-
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGISNSGDATC---IP---DLDVLDGDAVISFCRKWSVGLVVVG- 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~~~~~~~~~---v~---~~d~~d~~~l~~~~~~~~id~Vi~g- 154 (519)
+||||+|.|.....+++++++. |++++.++.+. ........++. +. .-+..|.+.|+++++++++|+|+|+
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~-Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~ 81 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEM-GIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGY 81 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCC
Confidence 6999999998777888888877 99998886542 21111111111 10 1124568899999999999999995
Q ss_pred ---CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee--cCCHHHHHHHHHHhCCCEEEEe
Q 010065 155 ---PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT--FTDPNAAKQYIQEEGAPIVVKA 229 (519)
Q Consensus 155 ---~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~--v~~~~~~~~~~~~~g~P~VvKP 229 (519)
+|+. .+++.++++|+|++|++++++.+++||..+|++++++|||+|++.. +.+.+++.++++++|||+|+||
T Consensus 82 g~lse~~---~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp 158 (472)
T PRK07178 82 GFLSENA---ELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKA 158 (472)
T ss_pred CCcccCH---HHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEe
Confidence 3554 3567799999999999999999999999999999999999988764 7888999888999999999999
Q ss_pred CCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCCC
Q 010065 230 DGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 230 ~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~ 305 (519)
..|+||+|++++++.+||.++++.+... ..+ .+..+++|+||++ +|+++.++.|+. .++.+..... ......
T Consensus 159 ~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~--~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~--s~~~~~ 234 (472)
T PRK07178 159 TSGGGGRGIRRCNSREELEQNFPRVISEATKAF--GSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDC--SIQRRN 234 (472)
T ss_pred CCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhc--CCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEcccc--ceEecC
Confidence 9999999999999999999998876432 112 2457999999976 899999998643 3333321110 000000
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH
Q 010065 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385 (519)
Q Consensus 306 ~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~ 385 (519)
. ......|++.++++..+++.+.+ .++++++|+. |.+++||++++++ ++||+|||||++++.. ....
T Consensus 235 ~-----~~~e~~P~~~l~~~~~~~i~~~a----~~~~~aLg~~--g~~~vEf~~d~~g-~~y~iEiNpRl~~~~~-~te~ 301 (472)
T PRK07178 235 Q-----KLIEIAPSPQLTPEQRAYIGDLA----VRAAKAVGYE--NAGTVEFLLDADG-EVYFMEMNTRVQVEHT-ITEE 301 (472)
T ss_pred c-----ceEEECCCCCCCHHHHHHHHHHH----HHHHHHcCCC--ceeEEEEEEeCCC-CEEEEEEeCCcCCCcc-ceee
Confidence 0 11234577558998888888876 4677888876 9999999998766 6999999999977543 3334
Q ss_pred HhCCCHHHHHHHHHhCCCCCCC--cccCCCcEEEEEEecCCCCC--CCCCCcccccchhhhccCCCeEEEEeeeeecCCC
Q 010065 386 RLESDLAEVLLAACRGELTGVT--LNWSPGSAMVVVMASKGYPG--SYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADG 461 (519)
Q Consensus 386 ~~G~d~~~~~i~~~~g~~~~~~--~~~~~~~a~~~~l~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (519)
.+|+|+.++++++++|...... .....++++.+.+..+. |. .......+..+... ..+++++.. +. ..|
T Consensus 302 ~tGvdl~~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~f~p~~g~i~~~~~~--~~~~vr~d~-~~---~~g 374 (472)
T PRK07178 302 ITGIDIVREQIRIASGLPLSYKQEDIQHRGFALQFRINAED-PKNDFLPSFGKITRYYAP--GGPGVRTDT-AI---YTG 374 (472)
T ss_pred eeCcCHHHHHHHHHCCCCCCCccccCCcceEEEEEEEeeec-CCcCEecCceEEEEEEcC--CCCCeEEEe-cc---cCC
Confidence 5799999999999999844321 12234788888777654 21 00011123222111 112343321 11 123
Q ss_pred cEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeecccccccccccccccc
Q 010065 462 NFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 462 ~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~ 517 (519)
...+ .+..+|+|+++|+|+++|.+++.++++.+++.| .+.++=+.++.|...++.|
T Consensus 375 ~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t 437 (472)
T PRK07178 375 YTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQGVKTTIPYYQEILRNPEFRSGQFNT 437 (472)
T ss_pred CEeCcccCCccceEEEEcCCHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhcCHhhcCCCccc
Confidence 2222 123459999999999999999999999999998 2344444456665555544
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=342.92 Aligned_cols=377 Identities=20% Similarity=0.165 Sum_probs=278.8
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
++++|+|||+|.....+++++++. |++++.++++.... ...++ ..+ ..+..|.+.+.+++++ +|+|....|...
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~l-G~~Vi~ld~~~~apa~~~AD-~~~-v~~~~D~~~l~~~a~~--~dvIt~e~e~v~ 95 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQM-GIKVKVLDPLEDCPASSVAA-RHV-VGSFDDRAAVREFAKR--CDVLTVEIEHVD 95 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCCCchhhhCc-eee-eCCCCCHHHHHHHHHH--CCEEEEecCCCC
Confidence 457999999998777777777765 99999987653211 12221 122 3567888999999987 677776555543
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC-CCCcE
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA-AGKGV 238 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~-gs~GV 238 (519)
.. ..+.++..|+|+ +++++++.+++||..+|++|+++|||+|+|..+.+.+++.++.+++|||+|+||..++ +|+|+
T Consensus 96 ~~-~l~~le~~gi~v-~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv 173 (577)
T PLN02948 96 VD-TLEALEKQGVDV-QPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFGYPLMLKSRRLAYDGRGN 173 (577)
T ss_pred HH-HHHHHHhcCCcc-CCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCe
Confidence 33 347789999985 5999999999999999999999999999999999999998888999999999999877 69999
Q ss_pred EEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccc-cc-cccCCCCCCCCCCce
Q 010065 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQD-HK-RVGDGDTGPNTGGMG 314 (519)
Q Consensus 239 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~-~~-~~~~~~~~~~~g~~~ 314 (519)
+++++.+|+.++++.+.. ++..+|||+||++ +|++|.++++. +.+..++.... +. .++ ..
T Consensus 174 ~~v~~~~eL~~a~~~~~~------~~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~~E~~~~~~~~----------~~ 237 (577)
T PLN02948 174 AVAKTEEDLSSAVAALGG------FERGLYAEKWAPFVKELAVMVARSRDGSTRCYPVVETIHKDNIC----------HV 237 (577)
T ss_pred EEECCHHHHHHHHHHhhC------CCCcEEEEecCCCCeEEEEEEEECCCCCEEEecCcccEEECCee----------EE
Confidence 999999999999988753 4568999999998 99999999742 22333332221 11 111 12
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEV 394 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~ 394 (519)
.+.|+. ++++..+++++.+ .++++++++. |++|+|||++++| ++||+|||||||++.++.. ..+++|+++.
T Consensus 238 ~~~Pa~-l~~~~~~~~~~~A----~~~~~aLg~~--Gv~~vEffv~~dG-~v~v~EInpRpg~sGh~t~-ea~~~s~fe~ 308 (577)
T PLN02948 238 VEAPAN-VPWKVAKLATDVA----EKAVGSLEGA--GVFGVELFLLKDG-QILLNEVAPRPHNSGHYTI-EACYTSQFEQ 308 (577)
T ss_pred EEECCC-CCHHHHHHHHHHH----HHHHHHhCCC--eEEEEEEEEcCCC-cEEEEEEeCCCCCCCceee-ecccCCHHHH
Confidence 357998 8999888888876 4688888865 9999999999887 7999999999998777444 4679999999
Q ss_pred HHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEE
Q 010065 395 LLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVT 474 (519)
Q Consensus 395 ~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi 474 (519)
++++++|.+........+.+.+.+++.... ... .....+.+++.+.. .+++++++++... ...+.|+|||+
T Consensus 309 ~vRa~lGlpl~~~~~~~~~A~m~nl~g~~~-~~~-g~~~~~~~~~~~~~-~p~~~v~~ygk~~------~r~~rkmGhV~ 379 (577)
T PLN02948 309 HLRAVLGLPLGDTSMKVPAAIMYNILGEDE-GEA-GFRLAHQLMGRALN-IPGASVHWYGKPE------MRKQRKMGHIT 379 (577)
T ss_pred HHHHHcCCCCCCccccCCcEEEEEEecccc-ccc-cccchhhHHHHHhh-CCCCEEEEecCCC------CCCCCeeEEEE
Confidence 999999984433222222244445555321 100 00011234444433 4566666665422 23458999999
Q ss_pred EecCCHHHHHHHHHHHhhccccCC
Q 010065 475 AKGKDVEEAQDRAYLAVEEINWPG 498 (519)
Q Consensus 475 ~~g~t~~ea~~~a~~~~~~i~~~g 498 (519)
+.|+|.+++.++++.+++.+++..
T Consensus 380 ~~g~~~~e~~~~~~~~~~~~~~~~ 403 (577)
T PLN02948 380 VVGPSAAEVEARLDQLLAEESADP 403 (577)
T ss_pred EecCCHHHHHHHHHHHHhhhccCC
Confidence 999999999999999999887653
|
|
| >PRK08463 acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=340.62 Aligned_cols=404 Identities=20% Similarity=0.224 Sum_probs=284.7
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-C-CCCc-CCCCCccccCC------CCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-N-AGIS-NSGDATCIPDL------DVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~-~~~~-~~~~~~~v~~~------d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+||||+|.|..+..+++++++. |++++.++.. + .... ..++. .+ .+ +..|.+.+++++++.++|+|+|
T Consensus 3 kkiLi~~~ge~a~~~i~aa~~l-G~~~v~v~~~~d~~~~~~~~AD~-~~-~i~~~~~~~y~d~~~i~~~a~~~~iDaI~p 79 (478)
T PRK08463 3 HKILIANRGEIAVRVIRACRDL-HIKSVAIYTEPDRECLHVKIADE-AY-RIGTDPIKGYLDVKRIVEIAKACGADAIHP 79 (478)
T ss_pred cEEEEECCCHHHHHHHHHHHHc-CCeEEEEECCCccCCcchhhcCE-EE-EcCCCchhcccCHHHHHHHHHHhCCCEEEE
Confidence 6999999998777788887766 9998877643 2 1111 11211 11 12 2357889999999999999999
Q ss_pred CC----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee-c--CCHHHHHHHHHHhCCCEE
Q 010065 154 GP----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT-F--TDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 154 g~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~-v--~~~~~~~~~~~~~g~P~V 226 (519)
+. |.. .+++.++.+|++++|++++++..++||..+|++++++|||+|++.. + .+.+++.++++++|||+|
T Consensus 80 g~g~lsE~~---~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvv 156 (478)
T PRK08463 80 GYGFLSENY---EFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVI 156 (478)
T ss_pred CCCccccCH---HHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEE
Confidence 53 444 3567799999999999999999999999999999999999988543 2 477888888899999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEecccccccccc
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVG 302 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~ 302 (519)
+||..|+||+|++++++.+|+.++++.+... ..+ .++.++||+||+| +|+++.++.|+ +.++.+.. +.. ...
T Consensus 157 vKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~--~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~e-r~~-s~~ 232 (478)
T PRK08463 157 LKASGGGGGRGIRVVHKEEDLENAFESCKREALAYF--NNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCE-RDC-SIQ 232 (478)
T ss_pred EEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEec-cCC-ccc
Confidence 9999999999999999999999998865321 112 3468999999997 88999988865 34443322 100 000
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
.... ......|++.+++++.+++.+.+ .++++++|+. |+.++||++++++ ++||+|||||++++.. .
T Consensus 233 ~~~~-----~~ie~~P~~~l~~~~~~~i~~~a----~~~~~alg~~--g~~~vEf~~~~~~-~~y~iEiN~R~~~~~~-~ 299 (478)
T PRK08463 233 RRHQ-----KVIEIAPCPSISDNLRKTMGVTA----VAAAKAVGYT--NAGTIEFLLDDYN-RFYFMEMNTRIQVEHG-V 299 (478)
T ss_pred cccC-----ceEEECCCCCCCHHHHHHHHHHH----HHHHHHcCCC--CceeEEEEEcCCC-CEEEEEEECCcCCCcc-e
Confidence 0000 12345677668998888888776 4677888877 8999999999766 7999999999988643 4
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCCCc--ccCCCcEEEEEEecCCCC--CC-CCCCcccccchhhhccCCCeEEEEeeeee
Q 010065 383 LMVRLESDLAEVLLAACRGELTGVTL--NWSPGSAMVVVMASKGYP--GS-YEKGSEIQNLEEAEQVAPSVKIFHAGTAL 457 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~~~~~~~--~~~~~~a~~~~l~~~~~~--~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 457 (519)
....+|+|+.++++++++|...+... ...+++++...+..+. | .. +..| .+..+... ..+++++- ...
T Consensus 300 te~~tGidlv~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~f~p~~G-~~~~~~~~--~~~~vr~d-~~~-- 372 (478)
T PRK08463 300 TEEITGIDLIVRQIRIAAGEILDLEQSDIKPRGFAIEARITAEN-VWKNFIPSPG-KITEYYPA--LGPSVRVD-SHI-- 372 (478)
T ss_pred eeHhhCCCHHHHHHHHHcCCCCCCccccCCCceEEEEEEEeccC-cccCeecCCc-EEEEEEcC--CCCCeeEe-ccc--
Confidence 44567999999999999998543211 1234677776655543 2 11 1111 22222110 11233322 111
Q ss_pred cCCCcEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccccc
Q 010065 458 DADGNFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 458 ~~~g~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~~~ 517 (519)
..|... ..+++++.++++|+|+++|.+++.++++.+.++|. +++.=+.++.|....+.|
T Consensus 373 -~~g~~v~~~~d~~la~~i~~g~~r~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t 438 (478)
T PRK08463 373 -YKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDGIRTTIPFLIAITKTREFRRGYFDT 438 (478)
T ss_pred -cCCCEeCcccccceeEEEEECCCHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhCCCccc
Confidence 123222 24479999999999999999999999999999992 444444455555444443
|
|
| >TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=333.32 Aligned_cols=296 Identities=22% Similarity=0.235 Sum_probs=229.4
Q ss_pred eEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCH
Q 010065 57 FSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDG 136 (519)
Q Consensus 57 ~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~ 136 (519)
||+|||||.|+||++|+.|+.. +..+|.+. |++++.++....+.+ +..+.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~------------------i~~al~~~-g~~v~~i~~~~~~~~-----------~~~~~ 50 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAA------------------VLKALRDL-GYDVYPVDIDKMGSW-----------TYKDL 50 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHH------------------HHHHHhhc-CCEEEEEeecCCccc-----------cccch
Confidence 7999999999999999999865 68888776 999988865432221 11121
Q ss_pred HH-HHHHH-HHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecC
Q 010065 137 DA-VISFC-RKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT 209 (519)
Q Consensus 137 ~~-l~~~~-~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~ 209 (519)
.. +.... ...++|+|++ .+|++.+ +..++.+|+|++|+++.++.+++||..++++|+++|||+|++..+.
T Consensus 51 ~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~---~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~ 127 (315)
T TIGR01205 51 PQLILELGALLEGIDVVFPVLHGRYGEDGTI---QGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLT 127 (315)
T ss_pred HHHHhhccccCCCCCEEEEecCCCCCCCcHH---HHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEe
Confidence 22 21111 1257999999 2566654 4559999999999999999999999999999999999999999887
Q ss_pred -CHHHH-----HHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEE
Q 010065 210 -DPNAA-----KQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFAL 283 (519)
Q Consensus 210 -~~~~~-----~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l 283 (519)
+.++. ..+.+.++||+|+||..+++|.||.+++|.+|+.++++.++. .+..+|||+||+|+|+++.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~i~G~e~~v~vi 201 (315)
T TIGR01205 128 QNRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE------YDEEVLVEQFIKGRELEVSIL 201 (315)
T ss_pred cccccchhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHh------cCCcEEEEcCCCCEEEEEEEE
Confidence 54322 233467899999999999999999999999999999988763 457899999999999999999
Q ss_pred EeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCC
Q 010065 284 VDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKS 363 (519)
Q Consensus 284 ~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g 363 (519)
.+++....+........++++..++..+++...+|+. ++++..+++++.+ .++++++|+. |++++||+++++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a----~~~~~~lg~~--G~~~vD~~~~~~g 274 (315)
T TIGR01205 202 GNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP-LDEELEEKIKELA----LKAYKALGCR--GLARVDFFLDEEG 274 (315)
T ss_pred CCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCC--ceEEEEEEEeCCC
Confidence 7554211111111111256667777777777778887 8988888888876 4688999987 9999999999876
Q ss_pred CceEEEEEeCCCCCCchHHHHH----HhCCCHHHHHHHHHh
Q 010065 364 GLPKLIEYNVRFGDPECQVLMV----RLESDLAEVLLAACR 400 (519)
Q Consensus 364 ~~~~viEiN~R~G~~~~~~~~~----~~G~d~~~~~i~~~~ 400 (519)
++||+|||||||++.. ++++ ..|.++.+++..++.
T Consensus 275 -~~~viEvN~~pg~~~~-s~~~~~~~~~G~~~~~l~~~ii~ 313 (315)
T TIGR01205 275 -EIYLNEINTIPGMTAI-SLFPKAAAAAGIEFSQLVERILE 313 (315)
T ss_pred -CEEEEEeeCCCCCCCc-cHHHHHHHHcCCCHHHHHHHHHh
Confidence 7999999999998775 4443 239999999988764
|
but a number of antibiotic resistance proteins score above the trusted cutoff of this model. |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=373.08 Aligned_cols=311 Identities=19% Similarity=0.194 Sum_probs=238.3
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC-CccccCCC
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD-ATCIPDLD 132 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~-~~~v~~~d 132 (519)
.++||+|||||.|+||+||+.||.+ +..+|.+. ||+++.++.+..+.+.... .......+
T Consensus 450 ~~~~i~vl~GG~S~E~~vSl~s~~~------------------v~~al~~~-~~~v~~~~i~~~g~~~~~~~~~~~~~~~ 510 (809)
T PRK14573 450 KKLSLGLVCGGKSCEHDISLLSAKN------------------IAKYLSPE-FYDVSYFLINRQGLWETVSSLETAIEED 510 (809)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHH------------------HHHhhccc-CcEEEEEEECCCCeEEeccccccccccc
Confidence 4789999999999999999999876 57777665 8888877655433221110 00000000
Q ss_pred C--CCH-HHHHHHHHHcCCcEEEE---C--CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 010065 133 V--LDG-DAVISFCRKWSVGLVVV---G--PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204 (519)
Q Consensus 133 ~--~d~-~~l~~~~~~~~id~Vi~---g--~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~ 204 (519)
. ... ..+. -...++|+||+ | +||+.+|++ ||.+|+||+|+++.++++++||..+|++++++|||+|+
T Consensus 511 ~~~~~~~~~~~--~~~~~~d~vf~~lhG~~gedg~iq~~---le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~ 585 (809)
T PRK14573 511 SGKSVLSSEIA--QALAKVDVVLPILHGPFGEDGTMQGF---LEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVP 585 (809)
T ss_pred ccccccchhhh--hccccCCEEEEcCCCCCCCChHHHHH---HHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCC
Confidence 0 000 0110 01146899999 3 899988777 99999999999999999999999999999999999999
Q ss_pred eeecCC------HH-HHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-c
Q 010065 205 YKTFTD------PN-AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-E 276 (519)
Q Consensus 205 ~~~v~~------~~-~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~ 276 (519)
|..++. .+ .+.++.++++||+||||++++||.||.+|++.+|+.+++++++. .+.++|||||+.| +
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~------~~~~vlVEe~i~~gr 659 (809)
T PRK14573 586 YQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFL------YDTDVFVEESRLGSR 659 (809)
T ss_pred EEEEechhcccChHHHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCcEEEEeccCCCE
Confidence 988863 22 23456678999999999999999999999999999999999874 4578999999876 9
Q ss_pred EEEEEEEEeCCeeEEe---ccccccccccCCCCCCCC-CC--ceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCee
Q 010065 277 EASFFALVDGENAIPL---ESAQDHKRVGDGDTGPNT-GG--MGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFV 350 (519)
Q Consensus 277 E~sv~~l~dg~~~~~~---~~~~~~~~~~~~~~~~~~-g~--~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~ 350 (519)
|++|.++.++...+.+ ........+|+|+.||.. +. ....+|++ +++++.+++++.+ .++++++|+.
T Consensus 660 Ei~v~vl~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a----~~~~~aLg~~-- 732 (809)
T PRK14573 660 EIEVSCLGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELA----ERIYRLLQGK-- 732 (809)
T ss_pred EEEEEEEeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHH----HHHHHHhCCc--
Confidence 9999999865432211 112222368899999953 32 23346888 9999999999887 4788999988
Q ss_pred eEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHh----CCCHHHHHHHHHhCCC
Q 010065 351 GVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRL----ESDLAEVLLAACRGEL 403 (519)
Q Consensus 351 G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~----G~d~~~~~i~~~~g~~ 403 (519)
|+++|||+++++| ++||+|||||||+|.. +++|.+ |+++.+++.+++...+
T Consensus 733 G~~riDf~v~~~g-~~yv~EiNt~PG~t~~-s~~p~~~~~~G~~~~~li~~ii~~a~ 787 (809)
T PRK14573 733 GSCRIDFFLDEEG-NFWLSEMNPIPGMTEA-SPFLTAFVRKGWTYEQIVHQLIIDGL 787 (809)
T ss_pred eEEEEEEEEcCCC-CEEEEEeeCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999876 8999999999999987 666643 9999998888765543
|
|
| >PRK08654 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=339.86 Aligned_cols=388 Identities=22% Similarity=0.250 Sum_probs=277.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CCC-C-cCCCCCcc-cc----CCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NAG-I-SNSGDATC-IP----DLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~~-~-~~~~~~~~-v~----~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
+||||+|.|.....+++++++. |++++.+..+ +.. . ...++... +. .-+..|.+.+++++++.++|+|+||
T Consensus 3 ~kvLIan~Geia~~iiraar~l-Gi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg 81 (499)
T PRK08654 3 KKILIANRGEIAIRVMRACREL-GIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPG 81 (499)
T ss_pred ceEEEECCcHHHHHHHHHHHHc-CCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEEC
Confidence 6899999998777778888776 9998887543 211 1 11122111 10 1234578999999999999999996
Q ss_pred ----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee--cCCHHHHHHHHHHhCCCEEEE
Q 010065 155 ----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT--FTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 155 ----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~--v~~~~~~~~~~~~~g~P~VvK 228 (519)
+|.. .+++.++..|++++|++++++.++.||..+|++++++|||+|++.. +.+.+++.++++++|||+|+|
T Consensus 82 ~gflsE~~---~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIK 158 (499)
T PRK08654 82 YGFLAENP---EFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIK 158 (499)
T ss_pred CCccccCH---HHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEE
Confidence 3554 4567799999999999999999999999999999999999988764 688999999999999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~ 304 (519)
|+.|+||+|++++++.+||.++++.+... ..|+ ++.++||+||+| +|+++.++.|+ ++++.+...... +...
T Consensus 159 p~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~--~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recs--iqrr 234 (499)
T PRK08654 159 ASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFG--DSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECS--IQRR 234 (499)
T ss_pred eCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCC--CCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccc--cccC
Confidence 99999999999999999999999876532 1232 468999999997 89999999875 344444321100 0000
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
.. ......|++.+++++.+++.+.+. ++++++|+. |..+|||+++++ ++||+|||||++.... ...
T Consensus 235 ~q-----k~ie~~Pa~~l~~~~~~~l~~~A~----~l~~algy~--g~gtVEfl~~~g--~~yflEiNpRlqveh~-vte 300 (499)
T PRK08654 235 HQ-----KLIEEAPSPIMTPELRERMGEAAV----KAAKAINYE--NAGTVEFLYSNG--NFYFLEMNTRLQVEHP-ITE 300 (499)
T ss_pred cc-----ceEEECCCCCCCHHHHHHHHHHHH----HHHHHcCCC--CceEEEEEEECC--cEEEEEEECCCCCCCc-eee
Confidence 00 112345776689888888888764 677888876 999999999754 5999999999976543 333
Q ss_pred HHhCCCHHHHHHHHHhCCCCCCCc--ccCCCcEEEEEEecCCCC-CCCCCCcccccchhhhccCCCeEEEEeeeeecCCC
Q 010065 385 VRLESDLAEVLLAACRGELTGVTL--NWSPGSAMVVVMASKGYP-GSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADG 461 (519)
Q Consensus 385 ~~~G~d~~~~~i~~~~g~~~~~~~--~~~~~~a~~~~l~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (519)
..+|+|+.+++++++.|...+... ....++++.+.+...+.. +.....-.|..+... ..+++++-. +. ..|
T Consensus 301 ~~tGvDlv~~~i~~A~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p--~~~~vr~d~-~~---~~g 374 (499)
T PRK08654 301 MVTGIDIVKEQIKIAAGEELSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSP--GGPGVRVDS-GV---HMG 374 (499)
T ss_pred hhhCCCHHHHHHHHhcCCCCCCcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcC--CCCCEEEEC-cc---cCC
Confidence 457999999999999998443221 123467877666554310 111111123332211 012333221 11 112
Q ss_pred cEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC
Q 010065 462 NFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG 498 (519)
Q Consensus 462 ~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g 498 (519)
... ...+++++|+++|+|+++|++++.++++...+.|
T Consensus 375 ~~v~~~~ds~~ak~i~~g~~r~~a~~~~~~al~~~~i~g 413 (499)
T PRK08654 375 YEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVG 413 (499)
T ss_pred CCcCCccCchhheeeEeCCCHHHHHHHHHHHHhhcEEEC
Confidence 211 2446899999999999999999999999999999
|
|
| >PRK07206 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=334.03 Aligned_cols=396 Identities=17% Similarity=0.137 Sum_probs=272.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCC---cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGI---SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~---~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
++++++++++.....+++++++. |++++.++.+. ... ...........++..+.+.++++++++++|+|+++.|.
T Consensus 2 ~k~~liv~~~~~~~~~~~a~~~~-G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~~~e~ 80 (416)
T PRK07206 2 MKKVVIVDPFSSGKFLAPAFKKR-GIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIAGAES 80 (416)
T ss_pred CCeEEEEcCCchHHHHHHHHHHc-CCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEECCCc
Confidence 46899999886666788888876 99999887442 111 11111111112344678899999999999999999887
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC---CEEEEeCCCCC
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA---PIVVKADGLAA 234 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~---P~VvKP~~g~g 234 (519)
.+. ..+...+.+|+|+ +++++++..++||..|+++|+++|||+|++..+.+.+++.+++++++| |+||||.+++|
T Consensus 81 ~~~-~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~~g~~~~P~VvKP~~g~g 158 (416)
T PRK07206 81 GVE-LADRLAEILTPQY-SNDPALSSARRNKAEMINALAEAGLPAARQINTADWEEAEAWLRENGLIDRPVVIKPLESAG 158 (416)
T ss_pred cHH-HHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHHHHHHHHHhcCCCCCCEEEeCCCCCC
Confidence 653 2344556788875 689999999999999999999999999999999999999999999888 99999999999
Q ss_pred CCcEEEeCCHHHHHHHHHHHHhh-ccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCc
Q 010065 235 GKGVIVAMTLEEAYEAVDSMLLK-NAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGM 313 (519)
Q Consensus 235 s~GV~~v~~~~el~~a~~~~~~~-~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~ 313 (519)
|.||++|+|.+|+.++++++... +.++..+..+||||||+|+||+++++..++.+........+..... .+......
T Consensus 159 s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~E~sv~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~ 236 (416)
T PRK07206 159 SDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIGTEYVVNFVSLDGNHLVTEIVRYHKTSLN--SGSTVYDY 236 (416)
T ss_pred CCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccccEEEEEEEEEECCEEEEEEeEEeeecccC--CCCceecc
Confidence 99999999999999999987642 1122234689999999999999999974433333222221111111 01111111
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH-HHhCCCHH
Q 010065 314 GAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM-VRLESDLA 392 (519)
Q Consensus 314 ~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~-~~~G~d~~ 392 (519)
....| .+....+++.+.+ .+++.++|+++ |++|+||+++++| +++||||+|+||+..+.+. ..+|+|+.
T Consensus 237 ~~~~p---~~~~~~~~i~~~~----~~~~~alg~~~-G~~h~E~~~~~~g--~~liEin~R~~G~~~~~~~~~~~G~d~~ 306 (416)
T PRK07206 237 DEFLD---YSEPEYQELVDYT----KQALDALGIKN-GPAHAEVMLTADG--PRLIEIGARLDGGLHPDVARLATGDSQL 306 (416)
T ss_pred cccCC---ccHHHHHHHHHHH----HHHHHHcCCcc-CCceEEEEEcCCC--CEEEEECCccCCCCccchhhhhcCcCHH
Confidence 12233 2344555555544 57889999964 9999999999988 9999999999887664444 44699999
Q ss_pred HHHHHHHhCCCCCCC---c--ccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecC
Q 010065 393 EVLLAACRGELTGVT---L--NWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATG 467 (519)
Q Consensus 393 ~~~i~~~~g~~~~~~---~--~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 467 (519)
+++++.++|...... . ...+..++.+ +.++. .+. ...+.+++++.+.+....+...-...+......++.
T Consensus 307 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~G~---~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~d~~ 381 (416)
T PRK07206 307 DATVESLADPDVFRETLREGYRLKAHVFNVF-LISPA-AGV---FSNVEFLEEIQKLPSFKKSHIYVKEGDYVPQTVDLF 381 (416)
T ss_pred HHHHHHHhCchhhccccCCCcChhhceEEEE-EecCC-Cce---EeCCccHHHHHhCCchhheEEecCCCCCccCceecC
Confidence 999999999732111 1 1112233333 33221 232 245777787765433222111111111234556778
Q ss_pred CeEEEEEEecCCHHHHHHHHHHHhhccccCC
Q 010065 468 GRVLGVTAKGKDVEEAQDRAYLAVEEINWPG 498 (519)
Q Consensus 468 ~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g 498 (519)
+|+|+|++.|+|.+++.+..+++.+ ++-+|
T Consensus 382 ~~~g~v~~~~~~~~~~~~~~~~~~~-~~~~~ 411 (416)
T PRK07206 382 SQPGTVYLVHKDKEQLWQDYEKIRK-MESKG 411 (416)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHH-HhhcC
Confidence 9999999999999999888777643 44333
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=320.80 Aligned_cols=361 Identities=20% Similarity=0.191 Sum_probs=267.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
+++|+|||+|.....++.++++. |+++++++++... ....++ ..+ ..+..|.+.+.++++ .+|+|.+..|+...
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l-G~~v~~~d~~~~~pa~~~ad-~~~-~~~~~D~~~l~~~a~--~~dvit~e~e~i~~ 76 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL-GYKVIVLDPDPDSPAAQVAD-EVI-VADYDDVAALRELAE--QCDVITYEFENVPA 76 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCCCCchhHhCc-eEE-ecCCCCHHHHHHHHh--cCCEEEeCcCCCCH
Confidence 46899999997666666666655 9999999876322 222222 222 457788999999887 57877776666544
Q ss_pred HHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCC-CCCCcEE
Q 010065 161 SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGL-AAGKGVI 239 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g-~gs~GV~ 239 (519)
.. .+.+++.+ + ++++++++.+++||..+|++|+++|||+|+|..+.+.+++.++.+++|||+|+||..+ .+|+|++
T Consensus 77 ~~-l~~l~~~~-~-~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~ 153 (372)
T PRK06019 77 EA-LDALAARV-P-VPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQW 153 (372)
T ss_pred HH-HHHHhcCC-e-eCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeE
Confidence 33 33455543 3 4699999999999999999999999999999999999999988899999999999986 5899999
Q ss_pred EeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCCCCCCCCCCceEEe
Q 010065 240 VAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDGDTGPNTGGMGAYS 317 (519)
Q Consensus 240 ~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (519)
++++.+|+.++++.+ .+..+|||+||++ +|+++.++++. +.+..++........ +. ...++.
T Consensus 154 ~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~~e~~~~~-----gi---~~~~~~ 217 (372)
T PRK06019 154 VIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFYPLVENVHRN-----GI---LRTSIA 217 (372)
T ss_pred EECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeCCcccEEeC-----CE---EEEEEC
Confidence 999999999998876 2468999999995 99999988742 234434433221110 00 012467
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHH
Q 010065 318 PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLA 397 (519)
Q Consensus 318 P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~ 397 (519)
|+. +++++.+++++.+ .+++.++++. |++++|||++++| ++||+||||||+++.+++ ...+++|.++.+++
T Consensus 218 pa~-~~~~~~~~~~~~a----~~i~~~L~~~--G~~~vEff~~~dg-~~~v~EinpR~~~sg~~t-~~~~~~sqf~~~ir 288 (372)
T PRK06019 218 PAR-ISAELQAQAEEIA----SRIAEELDYV--GVLAVEFFVTGDG-ELLVNEIAPRPHNSGHWT-IEACSTSQFEQHLR 288 (372)
T ss_pred CCC-CCHHHHHHHHHHH----HHHHHHcCcc--ceeEEEEEEcCCC-eEEEEEecCCccCcccEE-hhhcCccHHHHHHH
Confidence 887 8888888887766 4677888865 9999999999876 899999999999888855 34679999999999
Q ss_pred HHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEec
Q 010065 398 ACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKG 477 (519)
Q Consensus 398 ~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g 477 (519)
+++|.+.. .+.....+++.+++.... ...+++.+.+ .++++++++|... ...+.++|||.+.|
T Consensus 289 a~~Glpl~-~~~~~~~~~m~nilg~~~---------~~~~~~~~~~-~~~~~~~~ygk~~------~~~~rk~Ghv~~~~ 351 (372)
T PRK06019 289 AILGLPLG-TTRLLSPAVMVNLLGDDW---------LEPRWDALLA-LPGAHLHLYGKAE------ARPGRKMGHVTVLG 351 (372)
T ss_pred HHcCCCCC-CccccCceEEEEEECchh---------hhhHHHHHhh-CCCCEEEECCCCC------CCCCCceEEEEeec
Confidence 99998544 233233356667766431 0122333322 3677777776532 13456799999999
Q ss_pred CCHHHHHHHHHHHhh
Q 010065 478 KDVEEAQDRAYLAVE 492 (519)
Q Consensus 478 ~t~~ea~~~a~~~~~ 492 (519)
+|.+++.++++.+..
T Consensus 352 ~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 352 DDVEALLAKLEALAP 366 (372)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999876
|
|
| >PRK02186 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=351.90 Aligned_cols=385 Identities=17% Similarity=0.197 Sum_probs=280.9
Q ss_pred ccEEEEEeCCh--hHHHHHHHHHhcCCCcEEEEecCCCCCcCCC-CCccccCCCCCCHHHHHHHHHHc-CCcEEEECCCh
Q 010065 82 RVVVLVIGGGG--REHALCYALKRSHSCDAVFCAPGNAGISNSG-DATCIPDLDVLDGDAVISFCRKW-SVGLVVVGPEA 157 (519)
Q Consensus 82 ~~~vliiG~g~--~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~-~~~~v~~~d~~d~~~l~~~~~~~-~id~Vi~g~E~ 157 (519)
.+++++|+++. ....++.++++. |++++++.++........ ..+.+...|+.|.+.+++++++. .+++|+++.|.
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~l-G~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~~V~~~se~ 80 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLR-GFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSSSEY 80 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHc-CCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCCEEEeCchh
Confidence 36788888763 223456666655 999998875432111111 11111156889999999999887 68999998776
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCc
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKG 237 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~G 237 (519)
.. ...++..+.+|+| |++++++.+++||..|+++|+++|||+|++..+++.+++.++.++++||+||||.+++||.|
T Consensus 81 ~v-~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~~~PvVVKP~~g~gS~G 157 (887)
T PRK02186 81 FI-EVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGSVG 157 (887)
T ss_pred hH-HHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCC
Confidence 54 3456778899999 89999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEe
Q 010065 238 VIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYS 317 (519)
Q Consensus 238 V~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (519)
|++|+|.+|+.++++.+... ....+||||||+|+||+++++.+++....+.....+. ...+++.+.++..
T Consensus 158 V~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G~E~sVe~i~~~g~~~i~~i~~k~~-----~~~~~~ve~g~~~ 227 (887)
T PRK02186 158 VRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEGDEYSVETLTVARGHQVLGITRKHL-----GPPPHFVEIGHDF 227 (887)
T ss_pred eEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccCCcEEEEEEEECCcEEEEEEEeeec-----CCCCCeEEecccc
Confidence 99999999999999887542 3578999999999999999998544333333332211 1123344556678
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH-HhCCCHHHHHH
Q 010065 318 PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV-RLESDLAEVLL 396 (519)
Q Consensus 318 P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~-~~G~d~~~~~i 396 (519)
|++ ++++..+++.+.+ .+++.++|+++ |++|+||++++++ +||||||||+||+.++.+.. .+|+|+.++++
T Consensus 228 P~~-l~~~~~~~l~~~~----~~~l~aLG~~~-G~~hvE~~~t~~g--~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i 299 (887)
T PRK02186 228 PAP-LSAPQRERIVRTV----LRALDAVGYAF-GPAHTELRVRGDT--VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVI 299 (887)
T ss_pred CCC-CCHHHHHHHHHHH----HHHHHHcCCCc-CceEEEEEEECCC--EEEEEECCCCCCccHHHHHHHHHCcCHHHHHH
Confidence 988 8888877777765 57889999974 9999999999877 99999999998876544444 46999999999
Q ss_pred HHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcE----EecCCeEEE
Q 010065 397 AACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNF----IATGGRVLG 472 (519)
Q Consensus 397 ~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~rvg~ 472 (519)
++++|......+......++.+++... ++.. ..+.+.++.....+.+. ++.-. +.|.. .+..+|+|+
T Consensus 300 ~~~lG~~~~~~~~~~~~~ai~~~~~~~--~G~i---~~i~~~~~~~~~~~~~~-~~~~~---~~G~~v~~~~~~~~~~g~ 370 (887)
T PRK02186 300 DLHLGVAAFADPTAKRYGAIRFVLPAR--SGVL---RGLLFLPDDIAARPELR-FHPLK---QPGDALRLEGDFRDRIAA 370 (887)
T ss_pred HHhCCCCCCCCCCCCCeEEEEEEecCC--CceE---EecccchhhcccCCeEE-EEEec---CCCCEecCCCCCCCccEE
Confidence 999998655444433334444443321 2222 22333222111122333 21111 23332 345689999
Q ss_pred EEEecCCHHHHHHHHHHHhhccccC
Q 010065 473 VTAKGKDVEEAQDRAYLAVEEINWP 497 (519)
Q Consensus 473 vi~~g~t~~ea~~~a~~~~~~i~~~ 497 (519)
|++.|+|.+++.+.++++.+.+++.
T Consensus 371 vi~~g~~~~e~~~~~~~~~~~l~~~ 395 (887)
T PRK02186 371 VVCAGDHRDSVAAAAERAVAGLSID 395 (887)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCEEE
Confidence 9999999999999999999998874
|
|
| >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=319.74 Aligned_cols=286 Identities=23% Similarity=0.260 Sum_probs=232.4
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCC
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVL 134 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~ 134 (519)
+++|+|++||.|+||++|+.|+.. +..+|++. |+++..++.++
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~------------------i~~al~~~-g~~v~~i~~~~------------------ 46 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAA------------------VLAALREA-GYDAHPIDPGE------------------ 46 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHH------------------HHHHHHHC-CCEEEEEecCc------------------
Confidence 569999999999999999999765 68888776 99988774321
Q ss_pred CHHHHHHHHHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecC
Q 010065 135 DGDAVISFCRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT 209 (519)
Q Consensus 135 d~~~l~~~~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~ 209 (519)
.+.+.++..++|+||+. ++++.+++ .++.+|+|++|++..++.++.||..++++|+++|||+|++..+.
T Consensus 47 ---~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~---~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~ 120 (304)
T PRK01372 47 ---DIAAQLKELGFDRVFNALHGRGGEDGTIQG---LLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLT 120 (304)
T ss_pred ---chHHHhccCCCCEEEEecCCCCCCccHHHH---HHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEe
Confidence 12333445689999982 56665544 48999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCee
Q 010065 210 DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENA 289 (519)
Q Consensus 210 ~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~ 289 (519)
+.+++..++++++||+|+||..+++|.||.++++.+|+.++++.+.. .+..+|||+||+|+|+++.++.+ + .
T Consensus 121 ~~~~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~i~G~E~~v~vi~~-~-~ 192 (304)
T PRK01372 121 REEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK------YDDEVLVEKYIKGRELTVAVLGG-K-A 192 (304)
T ss_pred CcchHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh------cCCcEEEEcccCCEEEEEEEECC-C-c
Confidence 99888888889999999999999999999999999999999887753 35789999999999999988743 3 2
Q ss_pred EEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEE
Q 010065 290 IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLI 369 (519)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~vi 369 (519)
.++.........+++..+++.|+.....|+. ++++..+++.+.+ .++++++|+. |++++||+++++| ++||+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~~l~~~a----~~~~~~lg~~--g~~~iD~~~~~~g-~~~vi 264 (304)
T PRK01372 193 LPVIEIVPAGEFYDYEAKYLAGGTQYICPAG-LPAEIEAELQELA----LKAYRALGCR--GWGRVDFMLDEDG-KPYLL 264 (304)
T ss_pred cceEEEEecCCEEeeeccccCCCeEEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCc--ceEEEEEEEcCCC-CEEEE
Confidence 2222222223456677778888877888876 8888888888765 4688888976 9999999999876 89999
Q ss_pred EEeCCCCCCchHHHHH----HhCCCHHHHHHHHHh
Q 010065 370 EYNVRFGDPECQVLMV----RLESDLAEVLLAACR 400 (519)
Q Consensus 370 EiN~R~G~~~~~~~~~----~~G~d~~~~~i~~~~ 400 (519)
|+|+|||++.. +.++ ..|+++.+++..++.
T Consensus 265 EvN~~p~~~~~-~~~~~~~~~~g~~~~~~~~~ii~ 298 (304)
T PRK01372 265 EVNTQPGMTSH-SLVPMAARAAGISFSELVDRILE 298 (304)
T ss_pred EecCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999988654 3333 339999998887764
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=355.82 Aligned_cols=375 Identities=18% Similarity=0.201 Sum_probs=274.0
Q ss_pred ccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 82 RVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 82 ~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
.+||||+|+|.. ..+++++|++. |++++.++++...... ...++.+ ++.+.+.+.+.++++++++|
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~-G~~Vi~vd~np~t~~~~~~~aD~~-yi~p~~~e~v~~ii~~e~~D 100 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVVLINSNPATIMTDPETADRT-YIAPMTPELVEQVIAKERPD 100 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHc-CCEEEEEeCCcccccCChhhCcEE-EeCCCCHHHHHHHHHHhCCC
Confidence 357777777742 23578898877 9999998755321111 1112333 56777888999999999999
Q ss_pred EEEE--CCChhhHHHH----HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC-
Q 010065 150 LVVV--GPEAPLVSGL----ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG- 222 (519)
Q Consensus 150 ~Vi~--g~E~~~~~~~----a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g- 222 (519)
+|+| +++.++.... ...|+.+|+|++|++++++.+++||..+|++|+++|+|+|++..+.+.+++.++++++|
T Consensus 101 ~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~eea~~~~~~iG~ 180 (1102)
T PLN02735 101 ALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDIGE 180 (1102)
T ss_pred EEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCHHHHHHHHHHhCC
Confidence 9999 6777653221 24688999999999999999999999999999999999999999999999988889998
Q ss_pred CCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEecccccccc
Q 010065 223 APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKR 300 (519)
Q Consensus 223 ~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~ 300 (519)
||+||||+++.||.|+.+|+|.+||.++++.++.. +.++++||||||.| +|+++++++|. +++..++....
T Consensus 181 yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~----s~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v~~ie~--- 253 (1102)
T PLN02735 181 FPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAA----SITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIEN--- 253 (1102)
T ss_pred CCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhc----CCCCeEEEEEecCCCeEEEEEEEEcCCCCEEEEeeEEE---
Confidence 99999999999999999999999999999887532 35678999999999 89999999863 33433333222
Q ss_pred ccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCch
Q 010065 301 VGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 301 ~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~ 380 (519)
++ ..++++|.+..+.|+..++++..+++++.+ .++++++|+. +|.+|+||+++++++++||||||||++++..
T Consensus 254 -~d-p~gvh~G~s~~vaPa~tL~~~~~q~l~~~A----~ki~~aLgi~-~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~ 326 (1102)
T PLN02735 254 -ID-PMGVHTGDSITVAPAQTLTDKEYQRLRDYS----VAIIREIGVE-CGGSNVQFAVNPVDGEVMIIEMNPRVSRSSA 326 (1102)
T ss_pred -Ec-CCccccCCEEEEEeCCCCCHHHHHHHHHHH----HHHHHHhCCC-cCceEEEEEEECCCCcEEEEEecCCCCCcch
Confidence 22 235677887778899769999988888877 4688999985 3999999999963338999999999987543
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCCCC-CCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecC
Q 010065 381 QVLMVRLESDLAEVLLAACRGELTG-VTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459 (519)
Q Consensus 381 ~~~~~~~G~d~~~~~i~~~~g~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 459 (519)
.....+|+|+.+..+++++|...+ .......... ..+-...+| .+..+ | .+....-...
T Consensus 327 -l~s~atG~~~a~~~~klalG~~l~~~~~~~~~~~~-a~~ep~~d~--------~~~k~-------p---~~~f~~f~~~ 386 (1102)
T PLN02735 327 -LASKATGFPIAKMAAKLSVGYTLDQIPNDITLKTP-ASFEPSIDY--------VVTKI-------P---RFAFEKFPGS 386 (1102)
T ss_pred -hhhhhhCCCHHHHHHHHHCCCChhhhccccccccc-hheeecCCc--------EEEEc-------c---cCCcccccCC
Confidence 333457999999999999998322 2111111110 111000000 00000 0 1111111112
Q ss_pred CCcEEecCCeEEEEEEecCCHHHHHHHHHHHhh
Q 010065 460 DGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVE 492 (519)
Q Consensus 460 ~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~ 492 (519)
...+.+....+|.|++.|.|.+||.++|.+.++
T Consensus 387 ~~~l~~~mks~ge~m~~gr~~~ea~~ka~~~~~ 419 (1102)
T PLN02735 387 QPILTTQMKSVGEAMALGRTFQESFQKALRSLE 419 (1102)
T ss_pred CcccceeeeecceEEEecCCHHHHHHHHHHHhc
Confidence 334566778899999999999999999998875
|
|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=348.52 Aligned_cols=407 Identities=19% Similarity=0.237 Sum_probs=290.3
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCCCCCcc-c--c----CCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNSGDATC-I--P----DLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~~~~~-v--~----~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
+||||+|.|.....+++++++. |++++.++.+... ......++. + . .-+..|.+.++++|+++++|+|+|+
T Consensus 2 ~kvLI~g~Geia~~iiraak~l-Gi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG 80 (1201)
T TIGR02712 2 DTVLIANRGEIAVRIIRTLRRM-GIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPG 80 (1201)
T ss_pred cEEEEECCCHHHHHHHHHHHHc-CCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeC
Confidence 6899999998777888888876 9998888654211 111111111 1 0 1245578999999999999999996
Q ss_pred ----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC-eeecCCHHHHHHHHHHhCCCEEEEe
Q 010065 155 ----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK-YKTFTDPNAAKQYIQEEGAPIVVKA 229 (519)
Q Consensus 155 ----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~-~~~v~~~~~~~~~~~~~g~P~VvKP 229 (519)
.|.. .+++.++..|++++|++++++.++.||..+|++++++|||+|+ +..+.+.+++.+++++++||+||||
T Consensus 81 ~gflsE~~---~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~~a~~igyPvVVKP 157 (1201)
T TIGR02712 81 YGFLSENA---AFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSLDEALEAAKEIGYPVMLKS 157 (1201)
T ss_pred CcccccCH---HHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCHHHHHHHHHhcCCeEEEEE
Confidence 3444 4567799999999999999999999999999999999999866 6677899999988999999999999
Q ss_pred CCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCCC
Q 010065 230 DGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 230 ~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~ 305 (519)
..++||+|+++|++.+|+.++++.+... ..+ .+..++|||||+| +|+++.+++|+. .+..+...... +....
T Consensus 158 ~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f--~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s--~qr~~ 233 (1201)
T TIGR02712 158 TAGGGGIGMQKCDSAAELAEAFETVKRLGESFF--GDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCS--LQRRN 233 (1201)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhc--CCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEee--eEecC
Confidence 9999999999999999999998877531 112 2356999999995 999999999764 34444321100 00000
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH
Q 010065 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385 (519)
Q Consensus 306 ~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~ 385 (519)
. ......|++.++++..+++.+.+ .+++.++++. |+.++||+++++++++||+|||||+++... ....
T Consensus 234 ~-----k~vee~Pap~l~~~~~~~l~~~a----~~l~~aLgy~--G~~~VEfild~~~g~~y~lEVNpRlq~~~~-lte~ 301 (1201)
T TIGR02712 234 Q-----KVVEETPAPNLPPETRQALLAAA----ERLGEAVNYR--SAGTVEFIYDEARDEFYFLEVNTRLQVEHP-VTEM 301 (1201)
T ss_pred c-----cEEEEcCCCCCCHHHHHHHHHHH----HHHHHhcCcc--ceEEEEEEEECCCCCEEEEEEECCcCcchh-hHHH
Confidence 0 11234577668888888888776 4566777866 999999999975336999999999977543 3444
Q ss_pred HhCCCHHHHHHHHHhCCCCCCC-cc---cCCCcEEEEEEecCCCCCCC--CCCcccccchhhhccCCCeEEEEeeeeecC
Q 010065 386 RLESDLAEVLLAACRGELTGVT-LN---WSPGSAMVVVMASKGYPGSY--EKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459 (519)
Q Consensus 386 ~~G~d~~~~~i~~~~g~~~~~~-~~---~~~~~a~~~~l~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 459 (519)
.+|+|+.+++++++.|...+.. .. ...++++...+.++.....+ ..+ .+..+ ..+.++++-. -. .
T Consensus 302 ~tGvDlve~~ir~a~G~~~~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G-~l~~v----~~p~~vrvd~---~v-~ 372 (1201)
T TIGR02712 302 VTGLDLVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAENPAKNFQPSPG-LLTDV----QFPDDVRVDT---WV-E 372 (1201)
T ss_pred HhCCCHHHHHHHHHcCCCCCccccccccccceEEEEEEEeccCcccCcCCCCc-eeeEE----ECCCeEEEec---ee-c
Confidence 6799999999999999854432 11 12356666655554311111 011 11111 1122322211 11 2
Q ss_pred CCcEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeeccccccccccccccccC
Q 010065 460 DGNFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 460 ~g~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~~ 518 (519)
.|... ...++++.|+++|+|+++|+++++++++.++++| .|.|.-+..+.|...++.|+
T Consensus 373 ~G~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~~~~~~~~t~ 438 (1201)
T TIGR02712 373 TGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYGIETNLDYLRSILSSETFRSAQVSTR 438 (1201)
T ss_pred CCCEECCccCCCeEEEEEEECCHHHHHHHHHHHHhceEEcCcCcCHHHHHHHhcChhhcCCCccch
Confidence 23222 2458999999999999999999999999999998 36667677777777666654
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=305.65 Aligned_cols=297 Identities=21% Similarity=0.194 Sum_probs=241.5
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCC
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDV 133 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~ 133 (519)
++++++|++||.|+||+||+.|+.+ +..++... ++++..++....+.+... .
T Consensus 1 ~~~~vavl~gG~s~e~eVsl~sa~~------------------v~~~l~~~-~~~~~~~~~~~~~~~~~~---------~ 52 (317)
T COG1181 1 GKMKVAVLLGGRSAEREVSLLSAKA------------------VLRALKGF-GYDVTPVDITEAGLWMLD---------K 52 (317)
T ss_pred CceEEEEeeCCccccceEEEecHHH------------------HHHHHhhc-CceeEEEeccccceEEec---------c
Confidence 3689999999999999999999765 56666654 777766654432222211 0
Q ss_pred CCHHHHHHHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeec
Q 010065 134 LDGDAVISFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF 208 (519)
Q Consensus 134 ~d~~~l~~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v 208 (519)
.... ..-.++|.+|| .+||+.+|++ |+.+|+||+|++..++..++||..+|++++..|+|++++..+
T Consensus 53 ~~~~-----~~~~~~~vvfp~lhG~~gEDg~iqg~---le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~ 124 (317)
T COG1181 53 EVTK-----RVLQKADVVFPVLHGPYGEDGTIQGL---LELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVAL 124 (317)
T ss_pred ccch-----hhcccCCEEEEeCCCCCCCCchHHHH---HHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeee
Confidence 0001 11246788998 3899988887 999999999999999999999999999999999999999888
Q ss_pred CCH----HHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEE
Q 010065 209 TDP----NAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALV 284 (519)
Q Consensus 209 ~~~----~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~ 284 (519)
... ...++..+.++||++|||.+.++|.|+.++++.+|+..+++.++. ++.++++|+|+.|+|++|.++.
T Consensus 125 ~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~------~d~~vl~e~~~~~rei~v~vl~ 198 (317)
T COG1181 125 TRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFK------YDRDVLREQGITGREIEVGVLG 198 (317)
T ss_pred ecccchhHHHHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHH------hCCceeeccCCCcceEEEEecC
Confidence 742 234566678899999999999999999999999999998888875 6799999999999999999996
Q ss_pred eCC--eeEEecccccc-ccccCCCCCCCC-CCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEE
Q 010065 285 DGE--NAIPLESAQDH-KRVGDGDTGPNT-GGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIE 360 (519)
Q Consensus 285 dg~--~~~~~~~~~~~-~~~~~~~~~~~~-g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~ 360 (519)
+.. ..+++.++... ..+|+|++||.. |++.+.+|++ ++++..+++++.|+ ++++++||. |++++||+++
T Consensus 199 ~~~~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~-lt~~~~~~i~~lA~----~a~~alg~~--g~~rvDf~~~ 271 (317)
T COG1181 199 NDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAG-LTDEIHEEIKELAL----RAYKALGCL--GLARVDFFVD 271 (317)
T ss_pred CcccceecCceEEecCCCeEEeeeccccCCCCceeeCCCC-CCHHHHHHHHHHHH----HHHHhcCCC--ceEEEEEEEE
Confidence 433 34445555544 589999999977 7778888998 99999999999885 799999999 9999999999
Q ss_pred cCCCceEEEEEeCCCCCCchHHHHHHh----CCCHHHHHHHHHh
Q 010065 361 KKSGLPKLIEYNVRFGDPECQVLMVRL----ESDLAEVLLAACR 400 (519)
Q Consensus 361 ~~g~~~~viEiN~R~G~~~~~~~~~~~----G~d~~~~~i~~~~ 400 (519)
++.+++|++|||+.||+|.+ +++|.+ |+++.++...+..
T Consensus 272 ~~~g~~~l~EvNt~PG~t~~-sl~P~~~~~~gi~~~~L~~~~~e 314 (317)
T COG1181 272 DDEGEFVLLEVNTNPGMTAM-SLFPKAAAAAGISFAILVLRFVE 314 (317)
T ss_pred CCCCCEEEEEEeCCCCCccc-ccchhhHHHcCCCHHHHHHHHHh
Confidence 92237999999999999887 777765 9999888877654
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=301.77 Aligned_cols=347 Identities=22% Similarity=0.246 Sum_probs=252.6
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
+|+|||+|.....+++++++. |+++++++++... ....++ ..+ ..+..|.+.+.++++. .|+|....|.... .
T Consensus 1 ~igiiG~gql~~~l~~aa~~l-G~~v~~~d~~~~~p~~~~ad-~~~-~~~~~d~~~i~~~a~~--~dvit~e~e~i~~-~ 74 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL-GIKVHVLDPDANSPAVQVAD-HVV-LAPFFDPAAIRELAES--CDVITFEFEHVDV-E 74 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEECCCCCCChhHhCc-eeE-eCCCCCHHHHHHHHhh--CCEEEeCcCcCCH-H
Confidence 489999997777777777766 9999998765222 122222 122 3567788899998875 4666555555332 2
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC-CCCcEEEe
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA-AGKGVIVA 241 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~-gs~GV~~v 241 (519)
..+.+++.|+++. ++++++.+++||..+|++|+++|||+|++..+.+.+++.+++++++||+|+||..++ +|+|+.++
T Consensus 75 ~l~~l~~~g~~~~-p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v 153 (352)
T TIGR01161 75 ALEKLEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRI 153 (352)
T ss_pred HHHHHHhCCCeEC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEE
Confidence 3456888888865 999999999999999999999999999999999999999989999999999999876 89999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE--eCCeeEEeccccccccccCCCCCCCCCCceEEec
Q 010065 242 MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV--DGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSP 318 (519)
Q Consensus 242 ~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~--dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P 318 (519)
++.+|+.++++.+ .+..+||||||+| +|+++.+++ +|+ +..++......+ + +. ...++.|
T Consensus 154 ~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~-~~~~~~~~~~~~--~---g~---~~~~~~p 216 (352)
T TIGR01161 154 RNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGE-TAFYPVVENIHQ--D---GI---LRYVVAP 216 (352)
T ss_pred CCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCC-EEEECCcccEEe--C---CE---EEEEECC
Confidence 9999999988875 2358999999995 999999886 444 333433322111 0 00 0134568
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 319 APVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 319 ~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
+. ++++..+++.+.+ .++++++++. |++++||+++++| ++||+|||||+|++.++++ ..++.+.++.++++
T Consensus 217 ~~-~~~~~~~~~~~~a----~~i~~~l~~~--G~~~ve~~~~~dg-~~~v~EinpR~~~sg~~~~-~~~~~s~f~~~~ra 287 (352)
T TIGR01161 217 AA-VPDAIQARAEEIA----RRLMEELGYV--GVLAVEMFVLPDG-RLLINELAPRVHNSGHYTL-DGCSTSQFEQHLRA 287 (352)
T ss_pred CC-CCHHHHHHHHHHH----HHHHHHcCce--eEEEEEEEEeCCC-cEEEEEecCCCCCcCcCch-hhccccHHHHHHHH
Confidence 87 8888777777765 4677888864 9999999999887 8999999999998887544 45799999999999
Q ss_pred HhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecC
Q 010065 399 CRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGK 478 (519)
Q Consensus 399 ~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~ 478 (519)
++|..... +.....+++.+++... .. ....+..+++ .+++++++++... ...+.++|||...|+
T Consensus 288 ~~g~~l~~-~~~~~~~~m~n~~~~~-~~-------~~~~~~~~~~-~~~~~~~~y~k~~------~~~~rk~Ghi~~~~~ 351 (352)
T TIGR01161 288 ILGLPLGS-TELLLPSVMVNLLGTE-DD-------VIPLWEEILA-LPGAKLHWYGKAE------VRPGRKVGHVNLVGS 351 (352)
T ss_pred HcCCCCCC-ccccCCEEEEEEecCc-cc-------hHHHHHHHHh-CCCCEEEECCCCC------CCCCCcceEEEeecC
Confidence 99974332 2222225666666642 00 1123333322 4677788776532 234567899998886
Q ss_pred C
Q 010065 479 D 479 (519)
Q Consensus 479 t 479 (519)
+
T Consensus 352 ~ 352 (352)
T TIGR01161 352 D 352 (352)
T ss_pred C
Confidence 5
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=337.22 Aligned_cols=375 Identities=21% Similarity=0.231 Sum_probs=271.4
Q ss_pred ccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 82 RVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 82 ~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
.+||||||+|.. ..+++++|++. |+++++++++....... ..++.. ++.+.+.+.+.++++++++|
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~-G~~vi~v~~np~~~~~~~~~aD~~-y~~p~~~~~v~~ii~~e~~D 83 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEE-GYRVILVNSNPATIMTDPEMADKV-YIEPLTPEAVEKIIEKERPD 83 (1050)
T ss_pred CcEEEEECCCcchhcchhcccchHHHHHHHHHHc-CCEEEEEecchhhccCChhcCCEE-EECCCCHHHHHHHHHHhCCC
Confidence 478999999842 13578888876 99999997653221111 112222 33455788999999999999
Q ss_pred EEEE--CCChhhHH----HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC
Q 010065 150 LVVV--GPEAPLVS----GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA 223 (519)
Q Consensus 150 ~Vi~--g~E~~~~~----~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~ 223 (519)
+|+| +++.++.. ..+..++.+|++++|++++++.+++||..+|++|+++|+|+|++..+++.+++.++++++||
T Consensus 84 aIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~igy 163 (1050)
T TIGR01369 84 AILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKEIGY 163 (1050)
T ss_pred EEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHhCC
Confidence 9999 45665421 12456899999999999999999999999999999999999999999999999888999999
Q ss_pred CEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccc
Q 010065 224 PIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRV 301 (519)
Q Consensus 224 P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~ 301 (519)
|+||||+.+.||+|+.++++++|+.+++..++.. +...++||||||+| +|+++++++|.. ++..++....
T Consensus 164 PvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~----s~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~~~~e~---- 235 (1050)
T TIGR01369 164 PVIVRPAFTLGGTGGGIAYNREELKEIAERALSA----SPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMEN---- 235 (1050)
T ss_pred CeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhc----CCCCcEEEEEcccCceEEEEEEEEeCCCCEEEEeecee----
Confidence 9999999999999999999999999998887642 12368999999999 899999998743 3443433222
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchH
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~ 381 (519)
++ ..+.++|++..+.|+..++++..+++++.+ .++++++|+. |.+||||+++++++++||+|||||++++.+
T Consensus 236 ~~-p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a----~~i~~~Lg~~--G~~~Vef~l~~~~g~~~viEiNPR~~~s~~- 307 (1050)
T TIGR01369 236 FD-PMGVHTGDSIVVAPSQTLTDKEYQMLRDAS----IKIIRELGIE--GGCNVQFALNPDSGRYYVIEVNPRVSRSSA- 307 (1050)
T ss_pred cc-CcceecCceEEEecCCCCCHHHHHHHHHHH----HHHHHHcCCc--ceeEEEEEEECCCCcEEEEEeecCcCcchh-
Confidence 22 235677777778898778888888888876 4688888877 999999999976447999999999987654
Q ss_pred HHHHHhCCCHHHHHHHHHhCCCCCCCcc-cCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCC
Q 010065 382 VLMVRLESDLAEVLLAACRGELTGVTLN-WSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDAD 460 (519)
Q Consensus 382 ~~~~~~G~d~~~~~i~~~~g~~~~~~~~-~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (519)
.....+|+++.+..+++++|.....-.+ .. +.... .+..... .+.. + .+.+.+.+++. ..
T Consensus 308 l~s~atG~pl~~~~~~~alG~~l~~~~n~i~-g~~~~------~~~p~~~---~~~~-----k-~p~~~~~~~~~---~~ 368 (1050)
T TIGR01369 308 LASKATGYPIAKVAAKLAVGYGLDELKNPVT-GTTPA------SFEPSLD---YVVV-----K-IPRWDFDKFAG---VD 368 (1050)
T ss_pred hhhHHhCCCHHHHHHHHHcCCCchhhcCCCc-CcCcc------ccCcCCC---eEEE-----E-EEeCCCCCCCc---cc
Confidence 3344679999999999999983221111 11 10000 0100000 0000 0 01111111111 11
Q ss_pred CcEEecCCeEEEEEEecCCHHHHHHHHHHHhhc
Q 010065 461 GNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEE 493 (519)
Q Consensus 461 g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~ 493 (519)
.++.+....+|+|++.|.|.+||.+++.+.++.
T Consensus 369 ~~~~~~~k~~G~v~~~g~~~~ea~~ka~~~~~~ 401 (1050)
T TIGR01369 369 RKLGTQMKSVGEVMAIGRTFEEALQKALRSLEI 401 (1050)
T ss_pred CCcCcccceeeEEEEECCCHHHHHHHHHHHhcc
Confidence 223333446999999999999999999999874
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=333.52 Aligned_cols=408 Identities=23% Similarity=0.249 Sum_probs=284.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CCC--CcCCCCCcc-cc-----CCCCCCHHHHHHHHHHcCCcEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NAG--ISNSGDATC-IP-----DLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~~--~~~~~~~~~-v~-----~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
.+||||.+.|.....+++++++. |++++.+..+ +.. ....++... +. .-+..|.+.++++++++++|+|+
T Consensus 5 ~kkvLianrGeiavri~raa~el-Gi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~ 83 (1146)
T PRK12999 5 IKKVLVANRGEIAIRIFRAATEL-GIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIH 83 (1146)
T ss_pred ccEEEEECCcHHHHHHHHHHHHc-CCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEE
Confidence 46899999997777778887765 9999877543 211 111121111 11 11345789999999999999999
Q ss_pred EC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEE
Q 010065 153 VG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 153 ~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~V 226 (519)
|+ +|.. .+++.++..|++++|++++++..+.||..+|++++++|||+|++. .+.+.+++.++++++|||+|
T Consensus 84 PgyGflsE~~---~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvV 160 (1146)
T PRK12999 84 PGYGFLSENP---EFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIM 160 (1146)
T ss_pred eCCCccccCH---HHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEE
Confidence 96 4554 356778999999999999999999999999999999999998765 47899999999999999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEecccccccccc
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVG 302 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~ 302 (519)
+||..|+||+|+++|++.+||.++++.+... ..++ ++.+++|+||+| +++++.++.|+. +++.+...... ..
T Consensus 161 VKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg--~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcs--vq 236 (1146)
T PRK12999 161 LKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFG--NDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCS--VQ 236 (1146)
T ss_pred EEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcC--CCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccc--ee
Confidence 9999999999999999999999999886542 1232 468999999998 789999998753 34433211000 00
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
.... ......|+..++++..+++.+.+ .++++++|+. |.+++||+++++| ++||+|||||++.... .
T Consensus 237 rr~q-----k~ie~aP~~~L~~~~~~~l~~~A----~kl~~algy~--G~gtVEflvd~dg-~~yfIEINpRlqveh~-v 303 (1146)
T PRK12999 237 RRHQ-----KVVEIAPAPGLSEELRERICEAA----VKLARAVGYV--NAGTVEFLVDADG-NFYFIEVNPRIQVEHT-V 303 (1146)
T ss_pred ecCc-----cEEEEcCCCCCCHHHHHHHHHHH----HHHHHHcCCC--ceEEEEEEEECCC-CEEEEEEECCCCCcch-H
Confidence 0000 01224576558888888888776 4677888876 9999999999876 6999999999987543 3
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCC-C-------cccCCCcEEEEEEecCCCCC--C-CCCCcccccchhhhccCCCeEEE
Q 010065 383 LMVRLESDLAEVLLAACRGELTGV-T-------LNWSPGSAMVVVMASKGYPG--S-YEKGSEIQNLEEAEQVAPSVKIF 451 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~~~~~-~-------~~~~~~~a~~~~l~~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~~~ 451 (519)
....+|+|+.++++++++|..... . -....++++...+.... |. . +..| .|..+... ...++++.
T Consensus 304 te~~tGvDlv~~~iriA~G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aed-p~~~f~P~~G-~i~~~~~p--~~~~vr~d 379 (1146)
T PRK12999 304 TEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTED-PANNFMPDTG-RITAYRSP--GGFGVRLD 379 (1146)
T ss_pred HHHHhCcCHHHHHHHHHCCCCCCccccccccccccccceeEEEEEEEeec-CccCccCCCc-EEEEEEcC--CCCcEEee
Confidence 345579999999999999984332 1 01223677876655543 21 1 1111 22221110 00122221
Q ss_pred EeeeeecCCC-cEEecCCe-EEEEEEecCCHHHHHHHHHHHhhccccCC-----eeecccccccccccccccc
Q 010065 452 HAGTALDADG-NFIATGGR-VLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 452 ~~~~~~~~~g-~~~~~~~r-vg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~ 517 (519)
. +.. ..| .+....++ +++|+++|+|+++|.+++.++++.+++.| .|.++=+.++.|...++.|
T Consensus 380 ~-~~~--~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~~f~~~~~~t 449 (1146)
T PRK12999 380 G-GNA--FAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHPDFRAGDYTT 449 (1146)
T ss_pred c-ccc--CCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCHhhcCCCccc
Confidence 1 110 123 23334444 67899999999999999999999999999 2445555556665555444
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=339.02 Aligned_cols=303 Identities=16% Similarity=0.228 Sum_probs=240.8
Q ss_pred CccEEEEEeCChhH-----------HHHHHHHHhcCCCcEEEEecCCCCCc-CCCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 81 QRVVVLVIGGGGRE-----------HALCYALKRSHSCDAVFCAPGNAGIS-NSGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 81 ~~~~vliiG~g~~~-----------~~l~~~l~~~~g~~~v~~~~~~~~~~-~~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
+++||||||+|..+ ...+++|++. |++++.++.+....+ ..+.++.. ++.+.+.+.++++++++++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~-G~~tI~v~~npetvstd~~~aD~~-y~~pl~~e~vl~i~~~e~~ 650 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDA-GYETIMMNSNPETVSTDYDTSDRL-YFEPLTVEDVLNVIDLERP 650 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHc-CCeEEEEeCCCccccCCcccCCeE-EEEeCCHHHHHHHHHHhCC
Confidence 57899999999532 2367888877 999998864421111 11122333 3455669999999999999
Q ss_pred cEEEE--CCChhhH--HHHHHHHHH---------CCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHH
Q 010065 149 GLVVV--GPEAPLV--SGLANKLVK---------AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAK 215 (519)
Q Consensus 149 d~Vi~--g~E~~~~--~~~a~~le~---------~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~ 215 (519)
|+|+| |+|.++. ..+.+.|++ .|++++|++++++.+++||..++++|+++|||+|++..+.+.+++.
T Consensus 651 d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~eea~ 730 (1102)
T PLN02735 651 DGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEADAL 730 (1102)
T ss_pred CEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCHHHHH
Confidence 99998 6677642 233333332 2789999999999999999999999999999999999999999998
Q ss_pred HHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeCC-eeEEec
Q 010065 216 QYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDGE-NAIPLE 293 (519)
Q Consensus 216 ~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg~-~~~~~~ 293 (519)
++++++|||+||||+.++||+|+.++++.+||.++++.++.. ..+.+++||+||+ |+|++|++++|++ .+...
T Consensus 731 ~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~- 805 (1102)
T PLN02735 731 AIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEV----DPERPVLVDKYLSDATEIDVDALADSEGNVVIG- 805 (1102)
T ss_pred HHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEEECCCCCEEEe-
Confidence 889999999999999999999999999999999999998753 2346799999998 5999999999753 34322
Q ss_pred cccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeC
Q 010065 294 SAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNV 373 (519)
Q Consensus 294 ~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~ 373 (519)
....+.. +.+++.|++....|+..++++..+++++.+. ++++++++. |++++||++++++ ++||+|+||
T Consensus 806 ~i~e~~~----~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~----ki~~~L~~~--G~~~vqf~v~~dg-~~yviEiNp 874 (1102)
T PLN02735 806 GIMEHIE----QAGVHSGDSACSLPTQTIPSSCLATIRDWTT----KLAKRLNVC--GLMNCQYAITPSG-EVYIIEANP 874 (1102)
T ss_pred cceEeee----ccCccCCCccEEecCCCCCHHHHHHHHHHHH----HHHHHcCCc--ceeeEEEEEcCCC-cEEEEEEeC
Confidence 2333321 4567888888888986699999888888764 566788876 9999999998766 799999999
Q ss_pred CCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 374 RFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 374 R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
|++.+.. .+...+|+|+.++.+++++|.
T Consensus 875 R~s~t~p-~~~katGidl~~~~~~~~~G~ 902 (1102)
T PLN02735 875 RASRTVP-FVSKAIGHPLAKYASLVMSGK 902 (1102)
T ss_pred CCCccHH-HHHHHHCCCHHHHHHHHHcCC
Confidence 9987554 455667999999999999998
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=335.53 Aligned_cols=303 Identities=21% Similarity=0.275 Sum_probs=243.1
Q ss_pred CccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 81 QRVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 81 ~~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
+++||||+|+|.. ...++++|++. |++++.++.+...... .+..+.+ ++++.+.+.++++++++++
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~-G~~vI~v~~npetvs~d~~~~D~l-y~ep~~~e~vl~i~~~e~i 630 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALREL-GYETIMINYNPETVSTDYDTSDRL-YFEPLTFEDVMNIIELEKP 630 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhC-CCEEEEEecCCccccccccccceE-EEecCCHHHHHHHHhhcCC
Confidence 3589999999943 24668888877 9999988654221111 1112223 4566678999999999999
Q ss_pred cEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEE
Q 010065 149 GLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 149 d~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvK 228 (519)
|+|++.........+++.+++.|+|++|++++++..+.||..|+++|+++|||+|++..+.+.+++.+++++++||+|||
T Consensus 631 dgVI~~~gg~~~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~igyPvIVK 710 (1050)
T TIGR01369 631 EGVIVQFGGQTPLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGYPVLVR 710 (1050)
T ss_pred CEEEEccCcHhHHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhcCCCEEEE
Confidence 99998432222335788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeCCeeEEeccccccccccCCCCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDGENAIPLESAQDHKRVGDGDTG 307 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~ 307 (519)
|+++.||+|+.+++|.+||.++++++... +.+.+++||+||+ |+|++++++++++.+...... .+.. ..+
T Consensus 711 P~~~~Gg~gv~iv~~~eeL~~~l~~a~~~----s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i~~i~-e~~~----~~g 781 (1050)
T TIGR01369 711 PSYVLGGRAMEIVYNEEELRRYLEEAVEV----SPEHPVLIDKYLEDAVEVDVDAVSDGEEVLIPGIM-EHIE----EAG 781 (1050)
T ss_pred ECCCCCCCCeEEECCHHHHHHHHHHHHHh----CCCCCEEEeecCCCCeEEEEEEEEeCCEEEEEEEE-Eeec----ccC
Confidence 99999999999999999999999987642 2456799999999 799999999987755543322 2211 345
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHh
Q 010065 308 PNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRL 387 (519)
Q Consensus 308 ~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~ 387 (519)
.+.|.+....|+..++++..+++.+.+ .++++++|+. |++|+||++++++ +|+||+|||++++.. .+...+
T Consensus 782 v~sGds~~~~P~~~l~~~~~~~i~~~a----~ki~~aLgi~--G~~~vqf~~~~~~--~yvIEvNpR~s~t~p-~vs~at 852 (1050)
T TIGR01369 782 VHSGDSTCVLPPQTLSAEIVDRIKDIV----RKIAKELNVK--GLMNIQFAVKDGE--VYVIEVNPRASRTVP-FVSKAT 852 (1050)
T ss_pred CcCCCceEEecCCCCCHHHHHHHHHHH----HHHHHHCCCc--ceEEEEEEEECCe--EEEEEEeCCCCchHH-HHHHHH
Confidence 667777778888668988888888766 4677888876 9999999999765 999999999987543 344567
Q ss_pred CCCHHHHHHHHHhCCC
Q 010065 388 ESDLAEVLLAACRGEL 403 (519)
Q Consensus 388 G~d~~~~~i~~~~g~~ 403 (519)
|+|+.++++++++|..
T Consensus 853 Gi~l~~~~~~~~lG~~ 868 (1050)
T TIGR01369 853 GVPLIKLATRVMLGKK 868 (1050)
T ss_pred CCCHHHHHHHHHcCCC
Confidence 9999999999999983
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=336.19 Aligned_cols=300 Identities=20% Similarity=0.280 Sum_probs=241.2
Q ss_pred CccEEEEEeCChhH-----------HHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 81 QRVVVLVIGGGGRE-----------HALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 81 ~~~~vliiG~g~~~-----------~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
.+++|||+|+|..+ ..++++|++. |++++.++.+...... ....+.. ++++.+.+.++++++++++
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~-G~~vI~vn~npetvs~~~~~aD~~-y~ep~~~e~vl~I~~~e~~ 631 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKE-GYETIMINNNPETVSTDYDTADRL-YFEPLTLEDVLNVAEAENI 631 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHc-CCEEEEEeCCccccccccccCceE-EEccCCHHHHHHHHhhcCC
Confidence 46899999998531 3357888877 9999988654211111 1112333 4566678999999999999
Q ss_pred cEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEE
Q 010065 149 GLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 149 d~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvK 228 (519)
|+|++..+......+++.+++.|+|++|++++++..+.||..|+++|+++|||+|++..+.+.+++.++++++|||+|+|
T Consensus 632 dgVI~~~g~~~~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~~igyPvVVK 711 (1068)
T PRK12815 632 KGVIVQFGGQTAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIGYPVLIR 711 (1068)
T ss_pred CEEEEecCcHHHHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHhcCCCEEEE
Confidence 99999533333446788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGP 308 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~ 308 (519)
|+++.||+|+.++++.+|+.++++.+. +.+.++|||+||+|.|+++++++||+.+... ....+.. ..+.
T Consensus 712 P~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~G~E~~Vd~i~dg~~v~i~-~i~e~~e----~~gv 780 (1068)
T PRK12815 712 PSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFIDGKEYEVDAISDGEDVTIP-GIIEHIE----QAGV 780 (1068)
T ss_pred eCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeecCceEEEEEEEcCCceEEe-eEEEEee----ccCC
Confidence 999999999999999999999998873 2457899999999999999999988754422 2232211 2345
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhC
Q 010065 309 NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLE 388 (519)
Q Consensus 309 ~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G 388 (519)
+.|++..+.|...++++..+++++.+. ++++++++. |++|+||++++++ +|+||+|||+|++.. .+...+|
T Consensus 781 ~sGds~~v~pp~~l~~~~~~~i~~~a~----ki~~~L~~~--G~~niqf~v~~~~--~yviEiNpR~s~t~~-~~skatG 851 (1068)
T PRK12815 781 HSGDSIAVLPPQSLSEEQQEKIRDYAI----KIAKKLGFR--GIMNIQFVLANDE--IYVLEVNPRASRTVP-FVSKATG 851 (1068)
T ss_pred cCCCeeEEECCCCCCHHHHHHHHHHHH----HHHHHcCCc--cEEEEEEEEECCc--EEEEEEeCCCCccHH-HHHHHHC
Confidence 667666677665589888888888764 567788876 9999999999766 999999999988654 3444579
Q ss_pred CCHHHHHHHHHhCC
Q 010065 389 SDLAEVLLAACRGE 402 (519)
Q Consensus 389 ~d~~~~~i~~~~g~ 402 (519)
+|+.++++++++|.
T Consensus 852 v~l~~~~~~~~lG~ 865 (1068)
T PRK12815 852 VPLAKLATKVLLGK 865 (1068)
T ss_pred CCHHHHHHHHHcCC
Confidence 99999999999998
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=335.30 Aligned_cols=300 Identities=23% Similarity=0.318 Sum_probs=242.5
Q ss_pred CccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 81 QRVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 81 ~~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
.++||||||+|.. ...++++|++. |++++.++.+...... ....+.+ ++++.+.+.++++++++++
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~-G~~vi~v~~npetvs~~~~~aD~~-y~e~~~~e~v~~i~~~e~~ 630 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREA-GYETIMVNCNPETVSTDYDTSDRL-YFEPLTLEDVLEIIEKEKP 630 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHC-CCEEEEEeCCccccccccchhhhe-eecCCCHHHHHHHHHHcCC
Confidence 4689999999853 14568888877 9999988654221111 1112233 4577789999999999999
Q ss_pred cEEEE--CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEE
Q 010065 149 GLVVV--GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 149 d~Vi~--g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~V 226 (519)
|+|++ +++.+. .++..|+++|+|++|++++++.+++||..++++|+++|||+|++..+.+.+++.+++++++||+|
T Consensus 631 dgVi~~~g~~~~~--~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~igyPvv 708 (1066)
T PRK05294 631 KGVIVQFGGQTPL--KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGYPVL 708 (1066)
T ss_pred CEEEEEeCchhHH--HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhcCCCeE
Confidence 99997 667664 57888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCc-EEEEEEEEeCCeeEEeccccccccccCCC
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGE-EASFFALVDGENAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~-E~sv~~l~dg~~~~~~~~~~~~~~~~~~~ 305 (519)
|||+++.||.|+.+++|.+|+.++++.+... ..+.+++||+||+|. |+++++++||+.+.... ...+.. .
T Consensus 709 VKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~----s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~-i~e~i~----~ 779 (1066)
T PRK05294 709 VRPSYVLGGRAMEIVYDEEELERYMREAVKV----SPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGG-IMEHIE----E 779 (1066)
T ss_pred EEeCCCCCCCcEEEECCHHHHHHHHHHHHhh----CCCCcEEEEecCCCCEEEEEEEEecCCeEEEee-eEEeee----e
Confidence 9999999999999999999999999987642 245789999999997 99999999887443322 222211 2
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH
Q 010065 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385 (519)
Q Consensus 306 ~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~ 385 (519)
.+.+.|+.....|+..++++..+++++.+ .++++++|+. |++|+||++++++ +|++|||||++++.. .+..
T Consensus 780 ~gv~~Gds~~~~p~~~l~~~~~~~i~~~a----~~i~~aLg~~--G~~~vqf~~~~~~--~yViEiNpR~s~t~~-~~s~ 850 (1066)
T PRK05294 780 AGVHSGDSACSLPPQTLSEEIIEEIREYT----KKLALELNVV--GLMNVQFAVKDDE--VYVIEVNPRASRTVP-FVSK 850 (1066)
T ss_pred ccccCCCCcEEecCCCCCHHHHHHHHHHH----HHHHHHcCCe--eeEEEEEEEECCe--EEEEEEecCCCccHH-HHHH
Confidence 34566777777776558988888888776 4677888876 9999999999765 999999999987543 3445
Q ss_pred HhCCCHHHHHHHHHhCC
Q 010065 386 RLESDLAEVLLAACRGE 402 (519)
Q Consensus 386 ~~G~d~~~~~i~~~~g~ 402 (519)
.+|+|+.++++++++|.
T Consensus 851 atGi~~~~~~~~~~lG~ 867 (1066)
T PRK05294 851 ATGVPLAKIAARVMLGK 867 (1066)
T ss_pred HhCccHHHHHHHHHcCC
Confidence 57999999999999998
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=337.94 Aligned_cols=375 Identities=22% Similarity=0.232 Sum_probs=272.7
Q ss_pred ccEEEEEeCChhH-----------HHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 82 RVVVLVIGGGGRE-----------HALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 82 ~~~vliiG~g~~~-----------~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
.+||||+|+|... .+++++|++. |+++++++++...... ...++.. ++.+.+.+.+.++++++++|
T Consensus 7 ~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~-G~~vi~v~~~p~~~~~~~~~aD~~-y~~p~~~e~l~~ii~~e~~D 84 (1066)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREE-GYRVVLVNSNPATIMTDPEMADAT-YIEPITPEFVEKIIEKERPD 84 (1066)
T ss_pred CCEEEEECCchhhhcccccccchHHHHHHHHHHc-CCEEEEEcCCcccccCCcccCCEE-EECCCCHHHHHHHHHHHCcC
Confidence 4789999998531 3578888877 9999998765322111 1112222 33455688999999999999
Q ss_pred EEEE--CCChhhHHHH----HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC
Q 010065 150 LVVV--GPEAPLVSGL----ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA 223 (519)
Q Consensus 150 ~Vi~--g~E~~~~~~~----a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~ 223 (519)
+|+| +++.++.... ...|+++|++++|++++++..++||..+|++|+++|+|+|++..+++.+++.++++++||
T Consensus 85 ~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~ 164 (1066)
T PRK05294 85 AILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAEEIGY 164 (1066)
T ss_pred EEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCHHHHHHHHHHcCC
Confidence 9999 4666653222 235889999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccc
Q 010065 224 PIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRV 301 (519)
Q Consensus 224 P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~ 301 (519)
|+||||+.+.||.|+.++++.+|+.++++..+.. +....+|||+||+| +|+++.+++|+. .+..++....
T Consensus 165 PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~----s~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~~~e~---- 236 (1066)
T PRK05294 165 PVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDL----SPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIEN---- 236 (1066)
T ss_pred CeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhh----CCCCeEEEEEcccCceEEEEEEEEcCCCCEEEEeeeee----
Confidence 9999999999999999999999999999876532 23468999999999 799999998653 3443433222
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchH
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~ 381 (519)
++ ..+++.|+...+.|+..++++..+++++.+ .++++++|+.+ |++++||+++++++++||+|||||++++..
T Consensus 237 ~d-p~gih~g~~~~~~Pa~~l~~~~~~~l~~~a----~ki~~aLg~~~-G~~~vef~~~~~~g~~~viEiNPR~~~s~~- 309 (1066)
T PRK05294 237 ID-PMGVHTGDSITVAPAQTLTDKEYQMLRDAS----IAIIREIGVET-GGCNVQFALNPKDGRYIVIEMNPRVSRSSA- 309 (1066)
T ss_pred cc-ccceecCCeEEEeCCCCCCHHHHHHHHHHH----HHHHHHcCCcc-CceEEEEEEECCCCcEEEEEeecCCCccee-
Confidence 12 235677777777898558888888888876 46778888653 999999999964448999999999987653
Q ss_pred HHHHHhCCCHHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchh-hhccCCCeEEEEeeeeecCC
Q 010065 382 VLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEE-AEQVAPSVKIFHAGTALDAD 460 (519)
Q Consensus 382 ~~~~~~G~d~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~ 460 (519)
.....+|.++.+..+++++|.....-.+.-.+.... ... |. ++. +.+ .|.+.+++++.. .
T Consensus 310 ~~s~~tG~pl~~~~~~~~lG~~l~~m~n~~~g~~~~--~~~---p~----------~~~v~~k-~p~~~~~~y~k~---~ 370 (1066)
T PRK05294 310 LASKATGYPIAKVAAKLAVGYTLDEIKNDITGKTPA--SFE---PS----------LDYVVTK-IPRFAFEKFPGA---D 370 (1066)
T ss_pred eeeHhhCCCHHHHHHHHHcCCChHHhcCcccCCCcc--ccc---cc----------CCeEEEE-ccCCccccccCC---C
Confidence 223357999999999999997322111111010000 000 10 111 001 234444444332 2
Q ss_pred CcEEecCCeEEEEEEecCCHHHHHHHHHHHhh
Q 010065 461 GNFIATGGRVLGVTAKGKDVEEAQDRAYLAVE 492 (519)
Q Consensus 461 g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~ 492 (519)
.++.++...+|||++.|+|.+||.+++.+.++
T Consensus 371 ~~~g~~mrk~G~v~~~g~~~e~~~~k~~~~~~ 402 (1066)
T PRK05294 371 RRLGTQMKSVGEVMAIGRTFEESLQKALRSLE 402 (1066)
T ss_pred CCccceecccceEEEEcCCHHHHHHHHHHhcC
Confidence 23444557799999999999999999999875
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=335.29 Aligned_cols=375 Identities=22% Similarity=0.241 Sum_probs=272.4
Q ss_pred ccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 82 RVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 82 ~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
.+||||||+|.. ..+++++|++. |++++.++++....... ..++.+ ++++.+.+.+.++++++++|
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~-G~~vi~v~~np~~~~~d~~~ad~~-y~ep~~~e~l~~ii~~e~~D 84 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE-GYQVVLVNPNPATIMTDPAPADTV-YFEPLTVEFVKRIIAREKPD 84 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc-CCEEEEEeCCcchhhcCcccCCee-EECCCCHHHHHHHHHHhCcC
Confidence 467888888742 23578888877 99999987543221110 112223 45667789999999999999
Q ss_pred EEEE--CCChhhHHHH----HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC
Q 010065 150 LVVV--GPEAPLVSGL----ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA 223 (519)
Q Consensus 150 ~Vi~--g~E~~~~~~~----a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~ 223 (519)
+|+| +++.++.... ...|+++|++++|++++++..+.||..++++|+++|||+|++..+++.+++.++++++||
T Consensus 85 ~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~igy 164 (1068)
T PRK12815 85 ALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVEEALAFAEKIGF 164 (1068)
T ss_pred EEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCHHHHHHHHHHcCC
Confidence 9999 5676653222 235789999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccc
Q 010065 224 PIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRV 301 (519)
Q Consensus 224 P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~ 301 (519)
|+||||+.+.||.|+.+++|.+||.++++.++.. +...++|||+||+| +|+++++++|+ +.+..++.....
T Consensus 165 PvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~----s~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~~~~e~~--- 237 (1068)
T PRK12815 165 PIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQA----SPIHQCLLEESIAGWKEIEYEVMRDRNGNCITVCNMENI--- 237 (1068)
T ss_pred CEEEEECcCCCCCceEEECCHHHHHHHHHHHHhc----CCCCeEEEEEccCCCeEEEEEEEEcCCCCEEEEEeceec---
Confidence 9999999999999999999999999999887642 22368999999999 79999999864 334434333221
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchH
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~ 381 (519)
+ ..+.++|....+.|+..++++..+++++.+ .++++++|+. |.+++||+++++++++|++|||||++++.++
T Consensus 238 -~-p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a----~ki~~~Lg~~--G~~~vef~l~~~~g~~~ViEINPR~~~s~~l 309 (1068)
T PRK12815 238 -D-PVGIHTGDSIVVAPSQTLTDDEYQMLRSAS----LKIISALGVV--GGCNIQFALDPKSKQYYLIEVNPRVSRSSAL 309 (1068)
T ss_pred -c-cccccCCceEEEecCCCCCHHHHHHHHHHH----HHHHHHcCCC--CceEEEEEEECCCCcEEEEEEecCcccchhh
Confidence 1 235666777777898668988888888876 4677888874 9999999999865589999999999887653
Q ss_pred HHHHHhCCCHHHHHHHHHhCCC-CCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCC
Q 010065 382 VLMVRLESDLAEVLLAACRGEL-TGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDAD 460 (519)
Q Consensus 382 ~~~~~~G~d~~~~~i~~~~g~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (519)
....+|+++.+..++++.|.. ++...... +..... .. |. . ..+ +.+ .|.+.+..++.. .
T Consensus 310 -~~~atG~pl~~~~~~~alG~~l~ei~~~i~-g~~~a~--~e---p~-~---d~~-----~~k-~p~~~f~~y~~~---~ 369 (1068)
T PRK12815 310 -ASKATGYPIAKIAAKLAVGYTLNELKNPVT-GLTYAS--FE---PA-L---DYV-----VVK-FPRWPFDKFGYA---D 369 (1068)
T ss_pred -hhHhhCCcHHHHHHHHHcCCChHHhcCCcc-CCcccc--cC---Cc-c---ceE-----EEE-eccCccccccCc---c
Confidence 234679999999999999972 21111111 110000 00 10 0 000 001 133333333321 1
Q ss_pred CcEEecCCeEEEEEEecCCHHHHHHHHHHHhhc
Q 010065 461 GNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEE 493 (519)
Q Consensus 461 g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~ 493 (519)
.++.+....+|+|++.|+|.+||.++|.+.++.
T Consensus 370 ~~~g~kmks~G~v~~ig~~~eea~~ka~~~~~~ 402 (1068)
T PRK12815 370 RTLGTQMKATGEVMAIGRNFESAFQKALRSLEI 402 (1068)
T ss_pred ccccceecccceEEEecCCHHHHHHHHHHhhcC
Confidence 223334455699999999999999999999853
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=268.29 Aligned_cols=377 Identities=22% Similarity=0.271 Sum_probs=283.1
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
...|||++|+|....+++..+.+. |.+++.+|.. |.+....+... + .+|..|.++|..+++++++|.|+|--|.-.
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~QRL-G~eViAVDrY~~APAmqVAhrs-~-Vi~MlD~~al~avv~rekPd~IVpEiEAI~ 87 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEAQRL-GVEVIAVDRYANAPAMQVAHRS-Y-VIDMLDGDALRAVVEREKPDYIVPEIEAIA 87 (394)
T ss_pred CCeEEEEecCCccchHHHHHHHhc-CCEEEEecCcCCChhhhhhhhe-e-eeeccCHHHHHHHHHhhCCCeeeehhhhhh
Confidence 457899999997666777777665 9999999865 32233333222 3 579999999999999999999999766544
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcE
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGV 238 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l-~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV 238 (519)
... ...+|+.|..++ |...+..+++|+...|+++ +++|+|+.+|...++.+++.++++++||||++||..+++++|-
T Consensus 88 td~-L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGq 165 (394)
T COG0027 88 TDA-LVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQ 165 (394)
T ss_pred HHH-HHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCCeecccccccCCCCc
Confidence 433 345889999987 9999999999999999887 6899999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE--eCCeeEEecccccc-ccccCCCCCCCCCCce
Q 010065 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV--DGENAIPLESAQDH-KRVGDGDTGPNTGGMG 314 (519)
Q Consensus 239 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~--dg~~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 314 (519)
.++++++|+.++++.+.....- ...+++||+||+- .|+++-.++ ||...+ +.-..| +.-.||. .
T Consensus 166 svv~~~e~ve~AW~~A~~g~R~--~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~F--c~PIGHrq~dgdY~--------E 233 (394)
T COG0027 166 SVVRSPEDVEKAWEYAQQGGRG--GSGRVIVEEFVKFDFEITLLTVRAVDGTGSF--CAPIGHRQEDGDYR--------E 233 (394)
T ss_pred eeecCHHHHHHHHHHHHhcCCC--CCCcEEEEEEecceEEEEEEEEEEecCCCCc--CCCcccccCCCChh--------c
Confidence 9999999999999998754332 3579999999997 788888776 454322 221122 1222332 4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEV 394 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~ 394 (519)
++.|.. +++...++.+..|. ++-.+||-. |++.||+|+..|. +||.|+.|||.+|.. ..+...+.+-+++
T Consensus 234 SWQP~~-mS~~al~~A~~IA~----~vt~aLGG~--GiFGVElfv~gDe--V~FsEVSPRPHDTGm-VTLiSq~lsEF~L 303 (394)
T COG0027 234 SWQPQE-MSEAALEEAQSIAK----RVTDALGGR--GLFGVELFVKGDE--VIFSEVSPRPHDTGM-VTLISQDLSEFAL 303 (394)
T ss_pred ccCccc-cCHHHHHHHHHHHH----HHHHhhcCc--cceeEEEEEeCCE--EEEeecCCCCCCCce-EEEEeccchHHHH
Confidence 577888 89988888887764 566788866 9999999999886 999999999988765 2222238889999
Q ss_pred HHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEE
Q 010065 395 LLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVT 474 (519)
Q Consensus 395 ~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi 474 (519)
+++.++|.+.+.-..+.++++ .++++... . ......++.++... ++..+...|... ...+.|+|..+
T Consensus 304 H~RAiLGLPi~~i~~~~P~AS-~vI~~~~~-~----~~~~f~~l~~AL~~-p~t~vRlFGKP~------~~~~RRmGVAL 370 (394)
T COG0027 304 HVRAILGLPIPEIRQISPAAS-AVILAQET-S----QAPTFDGLAEALGV-PDTQVRLFGKPE------ADGGRRLGVAL 370 (394)
T ss_pred HHHHHhCCCccceeeeccccc-ceeecccc-c----cCCchhhHHHHhcC-CCceEEEecCCc------ccCCceeeEEE
Confidence 999999985443334444433 34444321 1 12345667776553 333333333221 23457799999
Q ss_pred EecCCHHHHHHHHHHHhhccccC
Q 010065 475 AKGKDVEEAQDRAYLAVEEINWP 497 (519)
Q Consensus 475 ~~g~t~~ea~~~a~~~~~~i~~~ 497 (519)
++++|.++|+++|.++.+.|.+.
T Consensus 371 A~a~~Ve~Are~A~~aa~~i~v~ 393 (394)
T COG0027 371 ATAESVEEARERARKAASAIEVK 393 (394)
T ss_pred ecCccHHHHHHHHHHHHhheecC
Confidence 99999999999999999998875
|
|
| >COG0439 AccC Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=289.24 Aligned_cols=403 Identities=21% Similarity=0.252 Sum_probs=285.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC--CC-CcCCCCCccccCCC-------CCCHHHHHHHHHHcCCcEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN--AG-ISNSGDATCIPDLD-------VLDGDAVISFCRKWSVGLV 151 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~--~~-~~~~~~~~~v~~~d-------~~d~~~l~~~~~~~~id~V 151 (519)
.+||||...|....-+.++.++. |++++.+.... .. ....++ +.+ .++ ..+.+.++..++....|+|
T Consensus 2 ~~kiLIanrGeia~ri~ra~~~l-Gi~tvav~s~~d~~~~~~~~ad-eav-~i~~~~~~~syl~i~~ii~~a~~~gadai 78 (449)
T COG0439 2 FKKILIANRGEIAVRIIRACREL-GIETVAVYSEADADALHVALAD-EAV-CIGPAPSADSYLNIDAIIAAAEETGADAI 78 (449)
T ss_pred CceEEEecCchhHHHHHHHHHHh-CCeEEEEeccccccchhhhhCc-eEE-EcCCccchhhhhhHHHHHHHHHhcCCceE
Confidence 46899999987666666666554 99998876431 11 111111 112 222 3458899999999999999
Q ss_pred EEC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee--cCCHHHHHHHHHHhCCCE
Q 010065 152 VVG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT--FTDPNAAKQYIQEEGAPI 225 (519)
Q Consensus 152 i~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~--v~~~~~~~~~~~~~g~P~ 225 (519)
+|| +|+. .+++.+++.|+-++||++++++.+.||..+|++++++|+|+|++.. +.+.+++.++++++|||+
T Consensus 79 ~pGygflsen~---~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPV 155 (449)
T COG0439 79 HPGYGFLSENA---AFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPV 155 (449)
T ss_pred cccchhhhCCH---HHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCE
Confidence 995 5665 4677799999999999999999999999999999999999999762 566788999999999999
Q ss_pred EEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccc
Q 010065 226 VVKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRV 301 (519)
Q Consensus 226 VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~ 301 (519)
||||..|+||+|+++|++.+||.+++..+... ..|+ ++.+++|+||++ +.+.+.++.|+. .++.+......
T Consensus 156 ivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg--~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcs--- 230 (449)
T COG0439 156 IVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFG--NPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCS--- 230 (449)
T ss_pred EEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCC---
Confidence 99999999999999999999999999988754 2354 356999999999 689999999886 55555432211
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchH
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~ 381 (519)
............|++.++++.+.++-+.+ .++.+..|.. |..++||+++.++ ++||+|+|||+++-..
T Consensus 231 ----iqrr~qkvieeapsp~~~~e~r~~i~~~a----~~a~~~~gY~--gagtvEfl~~~~~-~~yfiEmN~Rlqveh~- 298 (449)
T COG0439 231 ----IQRRHQKVIEEAPSPLLTEELREKIGEAA----VRAAKLIGYR--GAGTVEFLYDSNG-EFYFIEMNTRLQVEHP- 298 (449)
T ss_pred ----CcCCccceeeecCCCCCCHHHHHHHHHHH----HHHHHhcCCC--CCceEEEEEeCCC-CEEEEEEecccccCcc-
Confidence 01112234556788878888777777766 4676777755 9999999999744 6999999999977544
Q ss_pred HHHHHhCCCHHHHHHHHHhCCCCCC---CcccCCCcEEEEEEecCCCCCC-CCCCcccccchhhhccC--CCeEEEEeee
Q 010065 382 VLMVRLESDLAEVLLAACRGELTGV---TLNWSPGSAMVVVMASKGYPGS-YEKGSEIQNLEEAEQVA--PSVKIFHAGT 455 (519)
Q Consensus 382 ~~~~~~G~d~~~~~i~~~~g~~~~~---~~~~~~~~a~~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~--~~~~~~~~~~ 455 (519)
.....+|+|+.+.+++++.|+..+. +.... +.++...+..+. |.. + .+..|.-.....| +++++...
T Consensus 299 vte~vtGiDlv~~qi~ia~ge~l~~~q~~~~~~-g~aie~Ri~aed-p~~~f---~pspG~i~~~~~P~g~gvr~d~~-- 371 (449)
T COG0439 299 VTEMVTGIDLVKEQIRIAAGEPLSLKQEDIKFR-GHAIECRINAED-PLGNF---LPSPGKITRYAPPGGPGVRVDSG-- 371 (449)
T ss_pred ceehhhhhhHHHHHHHHHcCCCCCCCCCccccc-ceeeeceeeccC-CCCCc---CCCCCeeeeecCCCCCceEEEee--
Confidence 4555679999999999999973222 12222 556665555543 211 1 1111211111112 23333321
Q ss_pred eecCCCcE-EecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccc
Q 010065 456 ALDADGNF-IATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQF 515 (519)
Q Consensus 456 ~~~~~g~~-~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~ 515 (519)
.. ...++ ....+.++.+++.|.++++|..+++++++.+.++|. +++.=+..+.|....+
T Consensus 372 ~~-~~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g~~ 436 (449)
T COG0439 372 VY-DGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDGIKTNIPLLQEILRDPDFLAGDL 436 (449)
T ss_pred cc-cCcccCcchhhheeEEEEecCChHHHHHHHHHHHHheEecCccCChHHHHHHhcChHhhcCCc
Confidence 11 11122 235688999999999999999999999999999993 3444444444444433
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=321.28 Aligned_cols=407 Identities=19% Similarity=0.214 Sum_probs=283.6
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC--C-cCCCCCcc-cc-------CCCCCCHHHHHHHHHHcCCcEEE
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG--I-SNSGDATC-IP-------DLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~--~-~~~~~~~~-v~-------~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
||||-.-|.....+.+++++. |++++.+.++... . ...++... +. .-+..|.+.++++|+++++|+|+
T Consensus 1 ~~lianrgeia~ri~ra~~el-Gi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~ 79 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANEL-GIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIH 79 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEE
Confidence 477777775555567777766 9999998754221 1 11122111 10 11345789999999999999999
Q ss_pred EC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEE
Q 010065 153 VG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 153 ~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~V 226 (519)
|+ +|.. .+++.++..|++++|++++++.++.||..++++++++|||+|++. .+.+.+++.++++++|||+|
T Consensus 80 PGyGflsE~~---~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvI 156 (1143)
T TIGR01235 80 PGYGFLSENS---EFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVI 156 (1143)
T ss_pred ECCCccccCH---HHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEE
Confidence 96 3554 456779999999999999999999999999999999999999975 56788999999999999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEecccccccccc
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVG 302 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~ 302 (519)
+||..|+||+|++++++.+|+.++++.+..+ ..|+ ++.++||+||+| +|++|.++.|+. +++.+...... ..
T Consensus 157 VKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg--~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcs--vq 232 (1143)
T TIGR01235 157 IKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFG--NDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCS--VQ 232 (1143)
T ss_pred EEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEecccc--cc
Confidence 9999999999999999999999999887532 1232 368999999997 899999998653 34433211000 00
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
.... ......|+..++++..+++.+.+. ++++++|+. |+.+|||+++++| ++||||||||++.+.. .
T Consensus 233 rr~q-----k~ie~aPa~~L~~e~r~~I~~~A~----kla~aLgy~--G~gtVEFlvd~dg-~~yfIEVNPRiqveh~-v 299 (1143)
T TIGR01235 233 RRHQ-----KVVEVAPAPYLSREVRDEIAEYAV----KLAKAVNYI--NAGTVEFLVDNDG-KFYFIEVNPRIQVEHT-V 299 (1143)
T ss_pred ccCc-----eEEEEeCCCCCCHHHHHHHHHHHH----HHHHHcCCc--ceEEEEEEEeCCC-cEEEEEeecCCCcchh-H
Confidence 0000 112356776689988888888764 577888866 9999999999876 7999999999987544 3
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCC------C--CcccCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEE
Q 010065 383 LMVRLESDLAEVLLAACRGELTG------V--TLNWSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFH 452 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~~~~------~--~~~~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ 452 (519)
....+|+|+.+..++++.|.... + ......++++...+..++-... +..| .|..+... ..+++++-.
T Consensus 300 Te~vtGiDlv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g-~i~~~~~~--~g~gvr~d~ 376 (1143)
T TIGR01235 300 TEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTG-RIEAYRSA--GGFGIRLDG 376 (1143)
T ss_pred HHHHhCcHHHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCc-EeeEEecC--CCCCeEecc
Confidence 33457999999999999998433 1 1112347888887776541111 1111 12211110 001222110
Q ss_pred eeeeecCCCc-EEe-cCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeecccccccccccccccc
Q 010065 453 AGTALDADGN-FIA-TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 453 ~~~~~~~~g~-~~~-~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~ 517 (519)
+.. ..|. +.. .++-++.++++|.|+++|.+++.++++..++.| .|.++=+.++.|...++-|
T Consensus 377 -~~~--~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~~~~f~~~~~~t 445 (1143)
T TIGR01235 377 -GNS--YAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRIRGVKTNIPFLENVLGHPKFLDGSYDT 445 (1143)
T ss_pred -ccc--CCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhcCHhhcCCCccc
Confidence 000 0122 222 345567899999999999999999999999999 2444444556665555444
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=279.51 Aligned_cols=362 Identities=23% Similarity=0.233 Sum_probs=267.4
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCcEEEE--CCChhhHHHH--H--HHH
Q 010065 95 HALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVGLVVV--GPEAPLVSGL--A--NKL 167 (519)
Q Consensus 95 ~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~--g~E~~~~~~~--a--~~l 167 (519)
.+.+++|+++ |+++++++++....... ..++.+ ++.+...+.+..+++++++|+++| ++++++...+ . ..|
T Consensus 19 ~qac~aLkee-g~~vvlvnsnpAti~td~e~AD~~-y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l 96 (400)
T COG0458 19 TQACKALKEE-GYGVVLVNSNPATIMTDPELADKV-YIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVL 96 (400)
T ss_pred HHHHHHHHhc-CCeEEEEcCCCccccCCchhccee-eeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcch
Confidence 4568888777 99999986543222211 123333 566777899999999999999999 5676663222 1 235
Q ss_pred HHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHH
Q 010065 168 VKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247 (519)
Q Consensus 168 e~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el 247 (519)
+++|++++|++++++.++.||.+++++|+++|+|+| ....++.+++.+..+.+|||+||||+.+.||.|..+++|.+||
T Consensus 97 ~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel 175 (400)
T COG0458 97 EKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEEL 175 (400)
T ss_pred hhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccHHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHH
Confidence 677999999999999999999999999999999999 6788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCCCCCCCCCCceEEecCCCCCHH
Q 010065 248 YEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKE 325 (519)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~ 325 (519)
.+.....+.. .+..++++||+|.| +|+..++++|++ +++..+ ... .++ ..+.|++.+....|++++++.
T Consensus 176 ~~~~~~~l~~----s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc-~me---n~d-p~gvhtgdsi~vapaqtl~d~ 246 (400)
T COG0458 176 EEIIEEGLRA----SPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVC-NME---NLD-PMGVHTGDSITVAPAQTLTDK 246 (400)
T ss_pred HHHHHhcccc----CccccceeeeeecCceEEEEEEEEeCCCCEEEEE-eCC---ccc-cccccccceeeeccccccccH
Confidence 9999887753 34579999999999 999999999875 343332 222 122 457889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCC
Q 010065 326 LQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTG 405 (519)
Q Consensus 326 ~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~ 405 (519)
..+.++..+. ++++.+|+. |.+++||.++++++++|+||+|||++.+.. .-..++|..+..+..+++.|-..+
T Consensus 247 eyq~~r~~~~----~iir~igi~--G~~niQ~av~~~~~~~~viEvNpRvSrssa-LaskAtgypia~vaakla~g~~l~ 319 (400)
T COG0458 247 EYQMLRDAAI----KVIREIGIE--GGCNIQFAVDPGGGELYVIEINPRVSRSSA-LASKATGYPIAKVAAKLAVGYTLD 319 (400)
T ss_pred HHHHHHHHHH----HHHHHhccc--CCCceeEEEcCCCceEEEEEecCCcCcchh-hhhhccCChHHHHHHHhhcccCch
Confidence 8888887664 577888988 999999999998779999999999988665 333456888888888888887433
Q ss_pred CCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHH
Q 010065 406 VTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQD 485 (519)
Q Consensus 406 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~ 485 (519)
...+.-.+..... ..|. .. -.+..+.. .....|.. ...++.+....+|.|++.|+|++||++
T Consensus 320 Ei~n~it~~t~a~--fePs---ld---yvv~k~pr-----~~f~kf~~-----~~~~l~~~mks~gevm~igr~f~eal~ 381 (400)
T COG0458 320 EIRNDITGRTPAS--FEPS---LD---YVVTKIPR-----FDFEKFPG-----ADRRLGTQMKSVGEVMAIGRTFEEALQ 381 (400)
T ss_pred hhcCccccccccc--cCCc---cc---eeeeecCC-----CCcccccc-----cccceeeeeeccceEEEecchHHHHHH
Confidence 2221111111111 1111 00 01111111 01112211 123456677788999999999999999
Q ss_pred HHHHHhhc
Q 010065 486 RAYLAVEE 493 (519)
Q Consensus 486 ~a~~~~~~ 493 (519)
+|.+.++.
T Consensus 382 ka~~~l~~ 389 (400)
T COG0458 382 KALRSLEI 389 (400)
T ss_pred HHHHhhcc
Confidence 99998763
|
|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=283.44 Aligned_cols=299 Identities=20% Similarity=0.225 Sum_probs=218.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcC-CCcEEEEecCC--CCCcCCCCCccccCC-CCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSH-SCDAVFCAPGN--AGISNSGDATCIPDL-DVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~-g~~~v~~~~~~--~~~~~~~~~~~v~~~-d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
++||||+|+|... +++++|++.. |++++.++.+. ++....+....++.. +....+.++++++++++|+|+|+.|.
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~d~~~~~p~~~~~~~~~~l~~~~~~~~id~ii~~~d~ 79 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYFADKFYVVPKVTDPNYIDRLLDICKKEKIDLLIPLIDP 79 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHhccCcEecCCCCChhHHHHHHHHHHHhCCCEEEECCcH
Confidence 4799999998654 7899998874 58888876542 222211111111111 22236889999999999999998765
Q ss_pred h--hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHH--HHHHhCCCEEEEeCCCC
Q 010065 158 P--LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQ--YIQEEGAPIVVKADGLA 233 (519)
Q Consensus 158 ~--~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~--~~~~~g~P~VvKP~~g~ 233 (519)
. .+...++.++..|+++++++++++.+++||..|+++|+++|+|+|++..+.+.+++.+ +.+.++||+|+||.++.
T Consensus 80 ~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~viKP~~g~ 159 (326)
T PRK12767 80 ELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGS 159 (326)
T ss_pred HHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHHHHHhhhhcccCCCCEEEEeCCCC
Confidence 4 3445667788889988899999999999999999999999999999999999988877 45678999999999999
Q ss_pred CCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEe-CCeeEEeccccccccccCCCCCCCCCC
Q 010065 234 AGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVD-GENAIPLESAQDHKRVGDGDTGPNTGG 312 (519)
Q Consensus 234 gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~d-g~~~~~~~~~~~~~~~~~~~~~~~~g~ 312 (519)
+|.|+.+++|.+|+.++++.. ..++|||||+|+|++++++++ ++.+..+...... ... .|.
T Consensus 160 ~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~G~e~~v~~~~~~~G~~~~~~~~~~~-~~~-------~g~ 221 (326)
T PRK12767 160 ASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIEGQEYTVDVLCDLNGEVISIVPRKRI-EVR-------AGE 221 (326)
T ss_pred CccCeEEeCCHHHHHHHHHhC----------CCeEEEeccCCceEEEEEEEcCCCCEEEEEEeeee-eec-------CCc
Confidence 999999999999999888754 489999999999999999986 4444433222211 111 111
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHH
Q 010065 313 MGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392 (519)
Q Consensus 313 ~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~ 392 (519)
....... .++ ++.+.+ .++++++|+ +|++++||++++++ +|+||+|||++++.. +...+|+|+.
T Consensus 222 ~~~~~~~--~~~----~i~~~~----~~i~~~lg~--~G~~~vd~~~~~g~--~~viEiNpR~~g~~~--~~~~~G~n~~ 285 (326)
T PRK12767 222 TSKGVTV--KDP----ELFKLA----ERLAEALGA--RGPLNIQCFVTDGE--PYLFEINPRFGGGYP--LSYMAGANEP 285 (326)
T ss_pred eeEEEEc--CCH----HHHHHH----HHHHHhcCC--eeeEEEEEEEECCe--EEEEEEeCCCCCcch--hhHhhCCCHH
Confidence 1111111 122 344433 345678886 49999999999854 999999999987653 3345799999
Q ss_pred HHHHHHHhCCCCCCCc-ccCCCcE
Q 010065 393 EVLLAACRGELTGVTL-NWSPGSA 415 (519)
Q Consensus 393 ~~~i~~~~g~~~~~~~-~~~~~~a 415 (519)
+++++.++|....+.+ .++.+..
T Consensus 286 ~~~~~~~~g~~~~~~~~~~~~~~~ 309 (326)
T PRK12767 286 DWIIRNLLGGENEPIIGEYKEGLY 309 (326)
T ss_pred HHHHHHHcCCCCCcchhccccCeE
Confidence 9999999998544443 4444433
|
|
| >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=266.09 Aligned_cols=384 Identities=24% Similarity=0.285 Sum_probs=283.6
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC---CCcCCCC-Ccccc----CCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA---GISNSGD-ATCIP----DLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~---~~~~~~~-~~~v~----~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
.||||-.-|-....+++..++. |+.++.+.++.+ .....++ +..+- .-++.+.+.|++.+++...++|-||
T Consensus 3 ~KiLIANRGEIAcRVIRtar~l-Gi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPG 81 (645)
T COG4770 3 SKILIANRGEIACRVIRTARDL-GIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPG 81 (645)
T ss_pred ceEEEeccchhhHHHHHHHHHc-CCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccCC
Confidence 4788888775444566666655 999998865421 1122221 11111 1234568999999999999999995
Q ss_pred ----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee--cCCHHHHHHHHHHhCCCEEEE
Q 010065 155 ----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT--FTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 155 ----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~--v~~~~~~~~~~~~~g~P~VvK 228 (519)
+|.+ .+++.++..|+-++||++.+++..-||...|.++.++|+|+.|.+. +.+.+++..+++++|||+++|
T Consensus 82 YGFLSENa---~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIK 158 (645)
T COG4770 82 YGFLSENA---DFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIK 158 (645)
T ss_pred ccccccCH---HHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEE
Confidence 6876 5678899999999999999999999999999999999999977654 667888999999999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccc-----cccc
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESA-----QDHK 299 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~-----~~~~ 299 (519)
++.|+|++|++++.+.+|+.++++.+..+ ..|+ ++.++||+|+.- +.+.+.++.|+ ++++.+.+. +.|+
T Consensus 159 AsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFG--ddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQ 236 (645)
T COG4770 159 ASAGGGGKGMRVVETPEEFAEALESARREAKASFG--DDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQ 236 (645)
T ss_pred eccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcC--CceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcc
Confidence 99999999999999999999999988754 4564 489999999998 99999999875 366666542 3444
Q ss_pred cccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCc
Q 010065 300 RVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPE 379 (519)
Q Consensus 300 ~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~ 379 (519)
++.+ -.|++.|++++++.|-+.+. ++.++.| |.|.-.|||+++.++ .+||+|+|+|+.- .
T Consensus 237 KVIE------------EAPaP~l~~~~R~amg~aAv----~~a~avg--Y~gAGTVEFivd~~~-~f~FlEMNTRLQV-E 296 (645)
T COG4770 237 KVIE------------EAPAPFLTEETREAMGEAAV----AAAKAVG--YVGAGTVEFIVDADG-NFYFLEMNTRLQV-E 296 (645)
T ss_pred hhhh------------cCCCCCCCHHHHHHHHHHHH----HHHHhcC--CCcCceEEEEEcCCC-cEEEEEeecceec-c
Confidence 4433 35888899999999999875 4556767 559999999999988 7999999999955 3
Q ss_pred hHHHHHHhCCCHHHHHHHHHhCCCCCCC--cccCCCcEEEEEEecCC-CCCCCCCCcccccchhhhccCCC--eEEEEee
Q 010065 380 CQVLMVRLESDLAEVLLAACRGELTGVT--LNWSPGSAMVVVMASKG-YPGSYEKGSEIQNLEEAEQVAPS--VKIFHAG 454 (519)
Q Consensus 380 ~~~~~~~~G~d~~~~~i~~~~g~~~~~~--~~~~~~~a~~~~l~~~~-~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 454 (519)
+......+|+||.++.++++.|+..+.. ...-+++++...+..++ +-+.....-.+..+.. |.+ +++ ..|
T Consensus 297 HPVTE~iTGiDLVewqiRVA~GekL~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~----P~~~~vRv-DsG 371 (645)
T COG4770 297 HPVTELITGIDLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRP----PAGPGVRV-DSG 371 (645)
T ss_pred ccchhhhhhhHHHHHHHHHhcCCcCCcccccccccceeEEEEEeccCcccCccCCCceeEeecC----CCCCceec-ccC
Confidence 3355556799999999999999843321 12234889988877764 1122211112222211 111 111 111
Q ss_pred eeecCCCcEEec-CCeEEEEEEecCCHHHHHHHHHHHhhccccCCe
Q 010065 455 TALDADGNFIAT-GGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG 499 (519)
Q Consensus 455 ~~~~~~g~~~~~-~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~ 499 (519)
.. ..+.+... +..+..++++|.|+++|++++.++++...++|+
T Consensus 372 V~--~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~v~Gi 415 (645)
T COG4770 372 VR--EGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEGI 415 (645)
T ss_pred cc--cCCccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhEecCc
Confidence 11 12233333 344677899999999999999999999999983
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-30 Score=249.18 Aligned_cols=356 Identities=20% Similarity=0.223 Sum_probs=256.2
Q ss_pred ccEEEEEeCChhHHHHHHHHHhc---CCCcEEEEecCCC-CCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 82 RVVVLVIGGGGREHALCYALKRS---HSCDAVFCAPGNA-GISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~---~g~~~v~~~~~~~-~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
+++|.|||+|+ |.|++..+ .|+++++++|+.. .....++ ..+ ..+.+|.+++.+++.+. |+|-...|.
T Consensus 1 ~~tvgIlGGGQ----LgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~-~~i-~~~~dD~~al~ela~~~--DViT~EfE~ 72 (375)
T COG0026 1 MKTVGILGGGQ----LGRMMALAAARLGIKVIVLDPDADAPAAQVAD-RVI-VAAYDDPEALRELAAKC--DVITYEFEN 72 (375)
T ss_pred CCeEEEEcCcH----HHHHHHHHHHhcCCEEEEecCCCCCchhhccc-cee-ecCCCCHHHHHHHHhhC--CEEEEeecc
Confidence 36899999996 55555443 3999999987733 3333322 223 44666889999998764 556656666
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCC-CCCCC
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADG-LAAGK 236 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~-g~gs~ 236 (519)
.-...+.. ++.. .++. |++++..+..||...|++|+++|+|+|+|..+.+.+++..+++++|+|+|+|-.. |..|+
T Consensus 73 V~~~aL~~-l~~~-~~v~-p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~p~VlKtr~gGYDGk 149 (375)
T COG0026 73 VPAEALEK-LAAS-VKVF-PSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGYDGK 149 (375)
T ss_pred CCHHHHHH-HHhh-cCcC-CCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCceEEEeccccccCC
Confidence 55544433 4433 4554 9999999999999999999999999999999999999999999999999999964 56899
Q ss_pred cEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE--eCCeeEEecc--ccccccccCCCCCCCCC
Q 010065 237 GVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV--DGENAIPLES--AQDHKRVGDGDTGPNTG 311 (519)
Q Consensus 237 GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~--dg~~~~~~~~--~~~~~~~~~~~~~~~~g 311 (519)
|.+++++.+++........ .....++|+||+- +|+|+-+.+ ||+ +..++. +.....++.
T Consensus 150 GQ~~i~~~~~~~~~~~~~~-------~~~~~vlE~fV~F~~EiSvi~aR~~~G~-~~~yP~~eN~h~~gIl~-------- 213 (375)
T COG0026 150 GQWRIRSDADLELRAAGLA-------EGGVPVLEEFVPFEREISVIVARSNDGE-VAFYPVAENVHRNGILR-------- 213 (375)
T ss_pred CeEEeeCcccchhhHhhhh-------ccCceeEEeecccceEEEEEEEEcCCCC-EEEecccceeeecCEEE--------
Confidence 9999999998887555542 1234499999997 999999997 444 333433 333233332
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCH
Q 010065 312 GMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDL 391 (519)
Q Consensus 312 ~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~ 391 (519)
.++.|+. +++...+..++++. +++..++ |.|++.||||++.+| +++++|+.|||..+.+|++. .+.++-
T Consensus 214 --~siaPa~-i~~~~~~~A~~~a~----~i~~~L~--yvGVl~vE~Fv~~dg-~llvNEiAPRvHNSGH~T~~-gc~~SQ 282 (375)
T COG0026 214 --TSIAPAR-IPDDLQAQAEEMAK----KIAEELD--YVGVLAVEFFVTPDG-ELLVNEIAPRVHNSGHWTID-GCETSQ 282 (375)
T ss_pred --EEEecCc-CCHHHHHHHHHHHH----HHHHHcC--ceEEEEEEEEEECCC-cEEEeeccCCCCCccccchh-hccccH
Confidence 3578997 88887777777664 5556655 669999999999997 79999999999999997765 356777
Q ss_pred HHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEE
Q 010065 392 AEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVL 471 (519)
Q Consensus 392 ~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg 471 (519)
++.+++.++|.+... +.......|.++++....+. ...++. ..++.+++++|... ...+..+|
T Consensus 283 FEqHlRAv~glPLg~-~~~~~p~vMvNlLG~~~~~~---------~~~~~l-~~p~~~lH~YGK~e------~R~gRKmG 345 (375)
T COG0026 283 FEQHLRAVLGLPLGS-TTLLSPSVMVNLLGDDVPPD---------DVKAVL-ALPGAHLHWYGKAE------ARPGRKMG 345 (375)
T ss_pred HHHHHHHHhCCCCCC-ccccCceEEEEecCCCCchh---------hhHHHH-hCCCCEEEEecCcc------CCCCCeee
Confidence 888888888874333 22233467777777532111 122222 25678888887632 12345589
Q ss_pred EEEEecCCHHHHHHHHHHHhh
Q 010065 472 GVTAKGKDVEEAQDRAYLAVE 492 (519)
Q Consensus 472 ~vi~~g~t~~ea~~~a~~~~~ 492 (519)
||...+.|.+++.+.+...-.
T Consensus 346 Hvn~~~~~~~~~~~~~~~l~~ 366 (375)
T COG0026 346 HVNVLGSDSDELEQLAALLPA 366 (375)
T ss_pred eEEeecCCHHHHHHHHHhhhh
Confidence 999999997777766555543
|
|
| >PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=246.20 Aligned_cols=191 Identities=60% Similarity=1.023 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCE-EEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCC
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPI-VVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGC 265 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~-VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~ 265 (519)
+|..+|++++++|||++++..+++.+++.+++++.++|+ ||||...++++||.++.+.+|..+++++++....|+..+.
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~ 81 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGS 81 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGS
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCC
Confidence 799999999999999999999999999999999999999 9999999999999999999999999999998777877788
Q ss_pred cEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 010065 266 RVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE 345 (519)
Q Consensus 266 ~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~ 345 (519)
.++||||+.|.|+|+.++.||+.+.+++..++|++.++++.+|++|+|+.++|.+.++++..+.+.+.+++++++++++.
T Consensus 82 ~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~~~l~~e 161 (194)
T PF01071_consen 82 KVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTLKGLKKE 161 (194)
T ss_dssp SEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHHHHHHHT
T ss_pred cEEEEeccCCeEEEEEEEEcCCeEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCc
Q 010065 346 GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPE 379 (519)
Q Consensus 346 g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~ 379 (519)
|+.|.|+..+.+|++++| |++||.|.|+|.+.
T Consensus 162 g~~y~GvLy~glMlt~~G--p~vlEfN~RfGDPE 193 (194)
T PF01071_consen 162 GIPYRGVLYAGLMLTEDG--PKVLEFNVRFGDPE 193 (194)
T ss_dssp T---EEEEEEEEEEETTE--EEEEEEESSGSTTC
T ss_pred CCCcceeeeeeeEEeCCC--cEEEEEeCCCCCCC
Confidence 999999999999999998 99999999999864
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-33 Score=292.83 Aligned_cols=436 Identities=19% Similarity=0.186 Sum_probs=322.4
Q ss_pred ccccccccccccC-----CCceeccCCceeEEeccCCCccceeEEEeeccCCCC--CcccccCCC----------CCCCc
Q 010065 20 TKCFQFQKPFASS-----NNLRFSVGPNFSISFNPQGSKSSFFSTVKCLAQKSQ--PSVSVNAPT----------NAGQR 82 (519)
Q Consensus 20 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GG~s~e--~~vS~~s~~----------~~~~~ 82 (519)
|-|-||+..|+|. +||.|+.+|+||+||||+...+.+.-..+|+-.-.. +.-+...+. ...+.
T Consensus 298 tLp~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~tAs~~~t~~~~~~~~~~~ 377 (1435)
T KOG0370|consen 298 TLPAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKSTPTASAFITEPAKAAPRVEV 377 (1435)
T ss_pred cccCCCchheeecccCCCceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHHHhcCCcccccccccccccccccc
Confidence 5678999999987 699999999999999999998776666666542111 111111110 11245
Q ss_pred cEEEEEeCChhH-----------HHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCcE
Q 010065 83 VVVLVIGGGGRE-----------HALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVGL 150 (519)
Q Consensus 83 ~~vliiG~g~~~-----------~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id~ 150 (519)
++|+|+|+||.. .+.+++|+++ |+.+++++|+-....+. ..++.+ ++-+..++.+....+.+.+|+
T Consensus 378 ~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe-~i~TiLiNPNIAtvQts~~lAD~v-yflpvT~~~vt~vi~~erPd~ 455 (1435)
T KOG0370|consen 378 KKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEE-NIFTILINPNIATVQTSKGLADKV-YFLPVTPEYVTKVIKAERPDG 455 (1435)
T ss_pred cEEEEEccCCccccccceeeeeHHHHHHhhhhc-ccEEEEECCcccccccccccceEE-EEeecCHHHHHHHHHhhCCCe
Confidence 899999999642 4457788777 99999997762222211 124444 455667888889999999999
Q ss_pred EEE--CCChhhHHHH----HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC
Q 010065 151 VVV--GPEAPLVSGL----ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP 224 (519)
Q Consensus 151 Vi~--g~E~~~~~~~----a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P 224 (519)
++. |+...+..++ +..+++++++++|.+.++.....|+.++.+.+++.+.+..++...++.+++.++++.++||
T Consensus 456 il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie~al~aae~l~yp 535 (1435)
T KOG0370|consen 456 ILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIEEALEAAERLGYP 535 (1435)
T ss_pred EEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchhhHhHHHHHHHHHHhcCcH
Confidence 998 4555543332 2358889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEecccccccccc
Q 010065 225 IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVG 302 (519)
Q Consensus 225 ~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~ 302 (519)
+++.....-|+.|-.+++|++||.+....+++ ...+++||+-+.| +|+..++++|.. +++.++ .++ .+
T Consensus 536 vivRaayalgglgSgfa~n~eeL~~l~~~a~a------~s~QilvekSlkGwkevEyevvrDa~~nciTvc-nme---n~ 605 (1435)
T KOG0370|consen 536 VIVRAAYALGGLGSGFANNEEELQDLAAQALA------LSPQILVEKSLKGWKEVEYEVVRDAYDNCITVC-NME---NF 605 (1435)
T ss_pred HHHHHHHHhcCccccccccHHHHHHHHhhccc------cCceeeehhhhccccceEEEEEeccccchhhhc-CCc---cc
Confidence 99999999999999999999999999888875 5689999999999 999999998753 344332 222 34
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
| ..+.|+|++..+.|+.+++++..+.++..++ ++.+.+|.- |-+++++.+++...++++||+|+|...+.. .
T Consensus 606 D-plgihtGdSiVvapsqtlsd~ey~mlrttai----kVirhlgvv--GEcniQyaL~p~s~~y~IiEVNarLSrssa-L 677 (1435)
T KOG0370|consen 606 D-PLGIHTGDSIVVAPSQTLSDEEYQMLRTTAI----KVIRHLGVV--GECNIQYALNPYSLEYRIIEVNARLSRSSA-L 677 (1435)
T ss_pred C-cceeeccceEEEeeccccChHHHHHHHhcch----hheeccCCc--ccccceeeecccceeEEEEEEEeEEeehhh-h
Confidence 4 5689999999999999999999999998875 577788866 999999999998878999999999966443 2
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCc
Q 010065 383 LMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGN 462 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 462 (519)
...++|..+.....++++|.+.+.-++.-.+.....+-..-+ +.. .+|..++. .-|.. ...+
T Consensus 678 ASkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T~AcFEpslD----Y~v-~KiprWDl--------~kf~~-----vs~~ 739 (1435)
T KOG0370|consen 678 ASKATGYPLAYTAAKLALGIPLPELKNSVTKTTTACFEPSLD----YCV-VKIPRWDL--------SKFQR-----VSTE 739 (1435)
T ss_pred hccCccCcHHHHHHHHhcCcccccCCcccccceecccCcchh----hee-eecccccH--------HHHHH-----HHHh
Confidence 223459999999999999984322222222333333211111 110 11222221 01110 1123
Q ss_pred EEecCCeEEEEEEecCCHHHHHHHHHHHhhc
Q 010065 463 FIATGGRVLGVTAKGKDVEEAQDRAYLAVEE 493 (519)
Q Consensus 463 ~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~ 493 (519)
+.++...+|.|++.|.+.|||.++|.+..+.
T Consensus 740 igssmKSvgEvm~iGR~feea~QKalr~vd~ 770 (1435)
T KOG0370|consen 740 IGSSMKSVGEVMAIGRTFEEAFQKALRMVDP 770 (1435)
T ss_pred hchhhhhhhhhhhhhhhHHHHHHHHHhhcCh
Confidence 4466788999999999999999999888764
|
|
| >PRK06524 biotin carboxylase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-30 Score=264.57 Aligned_cols=251 Identities=14% Similarity=0.048 Sum_probs=182.8
Q ss_pred HHHHHHHHHcCCcEEEE-CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeec--CCHHH
Q 010065 137 DAVISFCRKWSVGLVVV-GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF--TDPNA 213 (519)
Q Consensus 137 ~~l~~~~~~~~id~Vi~-g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v--~~~~~ 213 (519)
..++++++.......+. -.||+.+|++ |+.+|+|++|++++++.+++||..+|++++++|||+|++..+ .+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~fl~~DG~iQ~l---LE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~ee 170 (493)
T PRK06524 94 PETLEFIKRRGPGGKACFVMFDEETEAL---ARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDE 170 (493)
T ss_pred HHHHHHHHhhCCCCceEEecCCHHHHHH---HHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHH
Confidence 45666666655433332 4789977666 999999999999999999999999999999999999999873 56666
Q ss_pred HHHHHHH--hCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC-eeE
Q 010065 214 AKQYIQE--EGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE-NAI 290 (519)
Q Consensus 214 ~~~~~~~--~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~-~~~ 290 (519)
+.+.++. +|||+||||+.|+||+|+++|++.+|+.+++.+++. .+.++||+||+|+|++|+++++++ .+.
T Consensus 171 l~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~-------~~~viVEe~I~GrEitVev~vd~dG~Vv 243 (493)
T PRK06524 171 LSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG-------QPEIKVMKRIRNVEVCIEACVTRHGTVI 243 (493)
T ss_pred HHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC-------CCCEEEEeccCcEEEEEEEEEeCCCCEE
Confidence 6666655 999999999999999999999999999999888752 367999999999999999997543 233
Q ss_pred Eec--cccccccccCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCce
Q 010065 291 PLE--SAQDHKRVGDGDTGPNTGGM-GAYSPAPVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLP 366 (519)
Q Consensus 291 ~~~--~~~~~~~~~~~~~~~~~g~~-~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~ 366 (519)
... ....+..+.+ |..|.. ..++|+. +++++.+++++.|. +++.++ ++++.|+++|||+++++++++
T Consensus 244 ~~~~~e~vg~~Ei~~----yr~G~~~~~i~PA~-L~~ei~eeIqeiA~----ka~~aL~~lG~~Gv~rVDFfvd~ddgev 314 (493)
T PRK06524 244 GPAMTSLVGYPELTP----YRGGWCGNDIWPGA-LPPAQTRKAREMVR----KLGDVLSREGYRGYFEVDLLHDLDADEL 314 (493)
T ss_pred eccccccccceEEEE----ccCCeEEEEEccCC-CCHHHHHHHHHHHH----HHHHHhhcCCCEEEEEEEEEEECCCCeE
Confidence 211 1111111211 111211 2467988 99999999888875 566666 223449999999999642379
Q ss_pred EEEEEeCCCCCCchHHHH-HHh--CCCHHHHHHHHHhCCCCCC
Q 010065 367 KLIEYNVRFGDPECQVLM-VRL--ESDLAEVLLAACRGELTGV 406 (519)
Q Consensus 367 ~viEiN~R~G~~~~~~~~-~~~--G~d~~~~~i~~~~g~~~~~ 406 (519)
||+||||||+++...+.. ..+ +.++..++++..+|.+.+.
T Consensus 315 YfnEINPR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~~ 357 (493)
T PRK06524 315 YLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYEL 357 (493)
T ss_pred EEEEEeCCcccccccchhhhccCCChhHHHHHHHHHhCCCcee
Confidence 999999999774432333 223 4455555666777875443
|
|
| >KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=251.22 Aligned_cols=387 Identities=21% Similarity=0.274 Sum_probs=275.5
Q ss_pred HHHHHHhcCCCcEEEEecCCC---CCcCCCC-Ccccc----CCCCCCHHHHHHHHHHcCCcEEEEC----CChhhHHHHH
Q 010065 97 LCYALKRSHSCDAVFCAPGNA---GISNSGD-ATCIP----DLDVLDGDAVISFCRKWSVGLVVVG----PEAPLVSGLA 164 (519)
Q Consensus 97 l~~~l~~~~g~~~v~~~~~~~---~~~~~~~-~~~v~----~~d~~d~~~l~~~~~~~~id~Vi~g----~E~~~~~~~a 164 (519)
+.+.+++. |++++.+.++-+ -....++ +-.+- ..+..+.+.+++.+++.+..+|.|| +|.. .++
T Consensus 13 VirTakkm-GI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~---~Fa 88 (670)
T KOG0238|consen 13 VIRTAKKM-GIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENA---EFA 88 (670)
T ss_pred hhhHHHHh-CCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccccccch---HHH
Confidence 45555554 999988864411 1111111 11110 1233457899999999999999995 6776 467
Q ss_pred HHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeC
Q 010065 165 NKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242 (519)
Q Consensus 165 ~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~ 242 (519)
+.++..|+.++||++.+++-..||...|++++++|+|+.+.. ...+.+++.+.++++|||+++|+..|+|++|++++.
T Consensus 89 e~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~ 168 (670)
T KOG0238|consen 89 ELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAW 168 (670)
T ss_pred HHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCCCcceEeec
Confidence 789999999999999999999999999999999999997753 356788899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccc-----cccccccCCCCCCCCCCc
Q 010065 243 TLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESA-----QDHKRVGDGDTGPNTGGM 313 (519)
Q Consensus 243 ~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~-----~~~~~~~~~~~~~~~g~~ 313 (519)
+++|+.+.++.+..+ ..|+ ++.+++|+||+. +.+.+.++.|+ ++.+.+.+. ++++.+.+
T Consensus 169 ~~~ef~~~~~~ak~Ea~~sFG--dd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiE---------- 236 (670)
T KOG0238|consen 169 SEEEFEEGLESAKQEAAKSFG--DDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIE---------- 236 (670)
T ss_pred ChHHHHHHHHHHHHHHHhhcC--cchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhh----------
Confidence 999999999887754 3464 488999999998 99999999976 356666542 23333332
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHH
Q 010065 314 GAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAE 393 (519)
Q Consensus 314 ~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~ 393 (519)
-.|++.++++.+..+-+.|+ ++.++.|+. |.-.|||++|..+ ++||+|+|+|+.- .+......+|.|+.+
T Consensus 237 --EaPap~l~~e~R~~lgeaAv----~aa~avgY~--~aGTVEFi~D~~~-~FyFmEmNTRLQV-EHPvTEmItg~DLVe 306 (670)
T KOG0238|consen 237 --EAPAPNLPEETRRALGEAAV----RAAKAVGYV--GAGTVEFIVDSKD-NFYFMEMNTRLQV-EHPVTEMITGTDLVE 306 (670)
T ss_pred --cCCCCCCCHHHHHHHHHHHH----HHHHhhCCc--ccceEEEEEcCCC-cEEEEEeeceeee-cccchhhccchHHHH
Confidence 35888899999999999875 466777754 9999999999976 8999999999954 232444457999999
Q ss_pred HHHHHHhCCCCCCC---cccCCCcEEEEEEecCCCCCCCC-CCcccccchhhhccCCCeEEEEeeeeecCCCcEE--ecC
Q 010065 394 VLLAACRGELTGVT---LNWSPGSAMVVVMASKGYPGSYE-KGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFI--ATG 467 (519)
Q Consensus 394 ~~i~~~~g~~~~~~---~~~~~~~a~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~ 467 (519)
+.++++.|...+.. ... +++++...+..++-.+.+. ..-++...... ...+.+++- .+. ..|.-. ..+
T Consensus 307 wqiRvA~ge~lp~~q~ei~l-~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p-~~~~~vRvd-tgV---~~g~~vs~~YD 380 (670)
T KOG0238|consen 307 WQIRVAAGEPLPLKQEEIPL-NGHAFEARIYAEDPYKGFLPSAGRLVYYSFP-GHSPGVRVD-TGV---RSGDEVSIHYD 380 (670)
T ss_pred HHHHHhcCCCCCCCcceeee-cceEEEEEEeecCCcccCCCCCccceeeccC-CCCCCeeee-cCc---ccCCccccccc
Confidence 99999999954432 222 4777777666554222211 00011111110 000122211 111 123222 245
Q ss_pred CeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccc
Q 010065 468 GRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQF 515 (519)
Q Consensus 468 ~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~ 515 (519)
..++.++++|.|+++|+.+..++++.-.+.|. |.|.-+.++.|.-.++
T Consensus 381 pmiaKlvvwg~dR~~Al~kl~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V 433 (670)
T KOG0238|consen 381 PMIAKLVVWGKDREEALNKLKDALDNYVIRGVPTNIDFLRDIISHPEFAKGNV 433 (670)
T ss_pred chheeeeEecCCHHHHHHHHHHHHhhcEEecCccchHHHHHHhcChhhhcCcc
Confidence 56788999999999999999999999999883 4444455555544443
|
|
| >PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=250.04 Aligned_cols=282 Identities=19% Similarity=0.228 Sum_probs=205.1
Q ss_pred HHHHHHHHHhcCCCcEEEEecCC-CCCcCCCCCccccCCCCCC-HHHHHHHHHHcCCcEEEECCChhhHHHHHHHHHHCC
Q 010065 94 EHALCYALKRSHSCDAVFCAPGN-AGISNSGDATCIPDLDVLD-GDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAG 171 (519)
Q Consensus 94 ~~~l~~~l~~~~g~~~v~~~~~~-~~~~~~~~~~~v~~~d~~d-~~~l~~~~~~~~id~Vi~g~E~~~~~~~a~~le~~g 171 (519)
.+.+...|++...++++..+.+. ......++.....+.+..+ .+.++++|+++++|+++|+-+...+....+.++..|
T Consensus 11 ~~~~i~~lr~~~~~~i~~sh~~~~~~~~~~aD~~~~eP~~~~~yv~~~l~~C~~~~Idv~~P~~~~~~l~~~r~~F~a~G 90 (329)
T PF15632_consen 11 QRDIIRSLRANRDFTIIASHRDPRAPILYAADEAYLEPADGEEYVDWCLDFCKEHGIDVFVPGRNRELLAAHRDEFEALG 90 (329)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCCchHHhcCceeeecCCCHHHHHHHHHHHHHHhCCeEEEcCccHHHHHHHHHHHHHhC
Confidence 35577777765334333333221 1111222222111222222 788999999999999999877666778888999999
Q ss_pred CCeeC-CcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC---EEEEeCCCCCCCcEEEeC-CHHH
Q 010065 172 IPTFG-PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP---IVVKADGLAAGKGVIVAM-TLEE 246 (519)
Q Consensus 172 ip~~g-~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P---~VvKP~~g~gs~GV~~v~-~~~e 246 (519)
+.++- ++.++..++.||..+.+.+++.|+|+|+++.+++.+++..+.+++++| ++|||+.|.||.|.++++ +.++
T Consensus 91 v~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~ 170 (329)
T PF15632_consen 91 VKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDE 170 (329)
T ss_pred CEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcch
Confidence 99976 789999999999999999999999999999999999999999988877 999999999999999998 4555
Q ss_pred HHHHHH------------HHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCce
Q 010065 247 AYEAVD------------SMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMG 314 (519)
Q Consensus 247 l~~a~~------------~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (519)
+....+ .+++. .+.-.++||+||++|.||||+++.+.+.++.....++. |..+
T Consensus 171 l~~l~~~~~~~i~~~~~~~~l~~---~~~~~~llvMeyL~G~EySVD~l~~~G~viaaV~R~K~------------G~~q 235 (329)
T PF15632_consen 171 LDALFEPDSRRISLDELLAALQR---SEEFPPLLVMEYLPGPEYSVDCLADEGRVIAAVPRRKL------------GRRQ 235 (329)
T ss_pred HHHhcCCCcceeCHHHHHHHHhc---cCCCCCcEEecCCCCCeEEEEEEecCCEEEEEEEEEec------------Ccee
Confidence 444333 11110 02457899999999999999999976666544332221 1112
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEV 394 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~ 394 (519)
.+. -++++.+..++ +.+.++++ |+++|||+.|.+| +++++|||||++|+...+. .+|+|+..+
T Consensus 236 ~l~----~~~~l~e~a~~--------l~~~~~l~--g~~NiQ~r~d~~g-~p~LLEINpR~sGGi~~s~--~aGvNlp~l 298 (329)
T PF15632_consen 236 VLE----NDEELIELARR--------LAEAFGLD--GLFNIQFRYDEDG-NPKLLEINPRPSGGIGYSC--AAGVNLPYL 298 (329)
T ss_pred EEE----ECHHHHHHHHH--------HHHHhCCC--ceEEEEEEEcCCC-CEEEEEeCCCCccchhhHh--hcCCChHHH
Confidence 221 24444444443 44788888 9999999998887 8999999999977665333 479999999
Q ss_pred HHHHHhCCCCCCC
Q 010065 395 LLAACRGELTGVT 407 (519)
Q Consensus 395 ~i~~~~g~~~~~~ 407 (519)
.++.++|...++.
T Consensus 299 a~~~~lG~~~~~~ 311 (329)
T PF15632_consen 299 AVKLALGEPIPPP 311 (329)
T ss_pred HHHHHcCCCCCCc
Confidence 9999999965443
|
|
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=257.81 Aligned_cols=395 Identities=21% Similarity=0.288 Sum_probs=285.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCc--CC-CCCccc-----cCC-CCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGIS--NS-GDATCI-----PDL-DVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~--~~-~~~~~v-----~~~-d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+||||-.-|.....+-++.. +.|+.++.+.+..+..+ .. ++..+. .++ ...+++.+++++++.+.|+|.|
T Consensus 8 ~KvLVANRgEIAIRvFRAa~-ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIhP 86 (1149)
T COG1038 8 KKVLVANRGEIAIRVFRAAN-ELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHP 86 (1149)
T ss_pred heeeeeccchhhHHHHHHHH-hcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCeecC
Confidence 68888887743222233333 34999998875532211 11 111111 012 2346899999999999999999
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEE
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~Vv 227 (519)
| +|.. .+++.+.+.||-++||.++.+..+.||...+....++|+|+.+.. .+.+.+++.+++++.|||+++
T Consensus 87 GYGfLSEn~---efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmi 163 (1149)
T COG1038 87 GYGFLSENP---EFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMI 163 (1149)
T ss_pred CcccccCCH---HHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEE
Confidence 5 6776 468889999999999999999999999999999999999996643 355789999999999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccc-----ccc
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESA-----QDH 298 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~-----~~~ 298 (519)
|.+.|+|++|++++.+++++.++++++.++ ..|+ ++.+.||+||+. +.+.|.++.|. ++++++-+. ++|
T Consensus 164 KA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG--~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRh 241 (1149)
T COG1038 164 KAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFG--NDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRH 241 (1149)
T ss_pred EEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcC--CCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhcc
Confidence 999999999999999999999999988754 4565 489999999999 89999999864 356655432 233
Q ss_pred ccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCC
Q 010065 299 KRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDP 378 (519)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~ 378 (519)
+.+ ..+.|+..|++++++++.+.+++ .+..++|.+.-.+||.+|++| ++||||+|||..--
T Consensus 242 QKV------------VE~APa~~L~~~~R~~ic~~Avk------la~~~~Y~~AGTvEFLvd~~~-~fyFIEvNPRiQVE 302 (1149)
T COG1038 242 QKV------------VEVAPAPYLSPELRDEICDDAVK------LARNIGYINAGTVEFLVDEDG-KFYFIEVNPRIQVE 302 (1149)
T ss_pred cee------------EEecCCCCCCHHHHHHHHHHHHH------HHHHcCCcccceEEEEEcCCC-cEEEEEecCceeeE
Confidence 332 34679999999999999998865 344555679999999999998 89999999999552
Q ss_pred chHHHHHHhCCCHHHHHHHHHhCC-CCCCCc--c-----cCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCe
Q 010065 379 ECQVLMVRLESDLAEVLLAACRGE-LTGVTL--N-----WSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSV 448 (519)
Q Consensus 379 ~~~~~~~~~G~d~~~~~i~~~~g~-~~~~~~--~-----~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~ 448 (519)
++.....+|+|+.+..+.++.|. +..+++ . ...++++...+.-++-... +++| .+
T Consensus 303 -HTiTE~vTgiDIV~aQi~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtG--------------rI 367 (1149)
T COG1038 303 -HTITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTG--------------RI 367 (1149)
T ss_pred -EeeeeeeechhHHHHHHHHhccCccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCc--------------eE
Confidence 22344457999999999999997 332221 1 1246788777665441111 1111 22
Q ss_pred EEEEe----eeeec----CCCcEEe-cC-CeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccc
Q 010065 449 KIFHA----GTALD----ADGNFIA-TG-GRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQK 513 (519)
Q Consensus 449 ~~~~~----~~~~~----~~g~~~~-~~-~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~ 513 (519)
..|+. |...+ -.|..++ .. +-+..+.++|.|+++|.+++.++++..++.|. |..+=+.++.|...
T Consensus 368 ~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g 447 (1149)
T COG1038 368 TAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSG 447 (1149)
T ss_pred EEEecCCCceEEecCCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCcccccC
Confidence 33321 11111 1233443 33 44567899999999999999999999999983 34455556666665
Q ss_pred cccc
Q 010065 514 QFAT 517 (519)
Q Consensus 514 ~~~~ 517 (519)
+..|
T Consensus 448 ~y~T 451 (1149)
T COG1038 448 RYTT 451 (1149)
T ss_pred ccee
Confidence 5544
|
|
| >PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=242.55 Aligned_cols=191 Identities=23% Similarity=0.316 Sum_probs=153.2
Q ss_pred HHHHcCCCCCCeeecCCHHHH----HHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEE
Q 010065 194 LCDKYGIPTAKYKTFTDPNAA----KQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVII 269 (519)
Q Consensus 194 ~l~~~Gi~~p~~~~v~~~~~~----~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lv 269 (519)
+++++|||+|++..+...+.. .+....++||+||||..+++|.||.+|++.+||.++++.++. .++.+||
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~------~~~~vlV 74 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFK------YDDDVLV 74 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTT------THSEEEE
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhh------hcceEEE
Confidence 578999999999999865543 345688999999999999999999999999999999999874 5689999
Q ss_pred EeccCCcEEEEEEEEeCC-eeEEeccccccccccCCCCCCCC--CCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 010065 270 EEFLEGEEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNT--GGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEG 346 (519)
Q Consensus 270 Ee~I~G~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g 346 (519)
||||+|+|++|.++.++. .+.+.........+++|+.||.. +.....+|+. +++++.+++++.| .++++++|
T Consensus 75 EefI~G~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~~i~~~a----~~a~~~lg 149 (203)
T PF07478_consen 75 EEFISGREFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQEKIKEIA----KKAFKALG 149 (203)
T ss_dssp EE--SSEEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHHHHHHHH----HHHHHHTT
T ss_pred EeeecccceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHHHHHHHH----HHHHHHHc
Confidence 999999999999998665 45555555555688999999843 5667778988 9999999999987 47999999
Q ss_pred CCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHh----CCCHHHHHHHHH
Q 010065 347 CKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRL----ESDLAEVLLAAC 399 (519)
Q Consensus 347 ~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~----G~d~~~~~i~~~ 399 (519)
|+ |++|+||+++++| ++||+|+|+.||++.. +.++.+ |+++.+++.+++
T Consensus 150 ~~--~~~RiD~rv~~~g-~~~~lEiNt~PGlt~~-S~~p~~~~~~G~sy~~li~~ii 202 (203)
T PF07478_consen 150 CR--GYARIDFRVDEDG-KPYFLEINTIPGLTPT-SLFPRMAEAAGISYEDLIERII 202 (203)
T ss_dssp TC--SEEEEEEEEETTT-EEEEEEEESS-G-STT-SHHHHHHHHTT--HHHHHHHHH
T ss_pred CC--CceeEEEEeccCC-ceEEEeccCcccccCC-CHHHHHHHHcCCCHHHHHHHHh
Confidence 99 9999999999887 8999999999999886 555543 999999988765
|
3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A .... |
| >PRK10446 ribosomal protein S6 modification protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-28 Score=239.99 Aligned_cols=265 Identities=18% Similarity=0.176 Sum_probs=188.2
Q ss_pred HHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC--CChhh-HHHHHHHHHHCCCC
Q 010065 97 LCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG--PEAPL-VSGLANKLVKAGIP 173 (519)
Q Consensus 97 l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g--~E~~~-~~~~a~~le~~gip 173 (519)
+..++++. |+++.++++.+...........+ ... . .+..++|+||+. ++... -...+..||.+| +
T Consensus 18 ~~~a~~~~-g~~v~~i~~~~~~~~~~~~~~~~-~~~--~-------~~~~~~d~v~~~~~~~~~~~~~~~~~~le~~g-~ 85 (300)
T PRK10446 18 LREAAIQR-GHLVEILDPLSCYMNINPAASSI-HYK--G-------RKLPHFDAVIPRIGTAITFYGTAALRQFEMLG-S 85 (300)
T ss_pred HHHHHHHc-CCeEEEEehHHceEecCCCcccE-EEC--C-------cccCCCCEEEEcCCCchhhHHHHHHHHHHHCC-C
Confidence 67787766 99999887553210000000000 000 0 012368999983 32111 112356799999 4
Q ss_pred eeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHH
Q 010065 174 TFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVKADGLAAGKGVIVAMTLEEAYEAVD 252 (519)
Q Consensus 174 ~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~-g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~ 252 (519)
++++++.++.+++||..++++|+++|||+|++..+.+.+++.++++++ +||+|+||.+|++|.||.++++.+++..+++
T Consensus 86 ~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~ 165 (300)
T PRK10446 86 YPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVID 165 (300)
T ss_pred ceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHH
Confidence 557999999999999999999999999999999888888888877777 7999999999999999999999999988887
Q ss_pred HHHhhccCCCCCCcEEEEecc---CCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHH
Q 010065 253 SMLLKNAFGSAGCRVIIEEFL---EGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSV 329 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~lvEe~I---~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~ 329 (519)
.+.. .+..+|||||| .|+|+.|.++ +++ +++........ -++..+++.|+... |.+ +++++
T Consensus 166 ~~~~------~~~~~lvQe~I~~~~g~d~rv~vi-g~~-~~~~~~r~~~~--~~~~~n~~~g~~~~--~~~-l~~~~--- 229 (300)
T PRK10446 166 AFRG------LNAHILVQEYIKEAQGCDIRCLVV-GDE-VVAAIERRAKE--GDFRSNLHRGGAAS--VAS-ITPQE--- 229 (300)
T ss_pred HHHh------cCCCEEEEeeeccCCCceEEEEEE-CCE-EEEEEEEecCC--CchhheeccCCeec--cCC-CCHHH---
Confidence 6643 34689999999 5899999877 443 44332221111 24455666665433 444 66553
Q ss_pred HHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 330 VMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 330 i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
++.+ .++++++|+. +++|||+++++| +||+|||++||++. +...+|+|+.+.+++.+...
T Consensus 230 -~~~a----~~a~~alg~~---~~gvD~~~~~~g--~~vlEvN~~pg~~~---~~~~~g~~~~~~~~~~i~~~ 289 (300)
T PRK10446 230 -REIA----IKAARTMALD---VAGVDILRANRG--PLVMEVNASPGLEG---IEKTTGIDIAGKMIRWIERH 289 (300)
T ss_pred -HHHH----HHHHHHhCCC---EEEEEEEEcCCC--cEEEEEECCCChhh---hHHHHCcCHHHHHHHHHHHh
Confidence 3433 3566888976 567999999877 89999999998753 44557999999999988766
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=246.15 Aligned_cols=269 Identities=16% Similarity=0.134 Sum_probs=186.5
Q ss_pred CCccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc---CCCC-CccccCCCCCC----HHHHHHHHHHcCCcE
Q 010065 80 GQRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS---NSGD-ATCIPDLDVLD----GDAVISFCRKWSVGL 150 (519)
Q Consensus 80 ~~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~---~~~~-~~~v~~~d~~d----~~~l~~~~~~~~id~ 150 (519)
+++++|||+|++. ...++++++++. |+++++++....... ...+ ...+ +....+ .+.|+++++++++|+
T Consensus 2 ~~~~~VLI~G~~~~~~l~iar~l~~~-G~~Vi~~d~~~~~~~~~s~~~d~~~~~-p~p~~d~~~~~~~L~~i~~~~~id~ 79 (389)
T PRK06849 2 NTKKTVLITGARAPAALELARLFHNA-GHTVILADSLKYPLSRFSRAVDGFYTI-PSPRWDPDAYIQALLSIVQRENIDL 79 (389)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHhhhheEEe-CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 3579999999985 457789999987 999998865432111 1111 1111 101112 688999999999999
Q ss_pred EEECCChhh-HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCEEEE
Q 010065 151 VVVGPEAPL-VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVK 228 (519)
Q Consensus 151 Vi~g~E~~~-~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~-g~P~VvK 228 (519)
|+|+.|+.. +....+.++. ++.+.+++.+.+..++||..|+++++++|||+|++..+++.+++.++..+. +||+|+|
T Consensus 80 vIP~~e~~~~~a~~~~~l~~-~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~~~~~~~~P~vlK 158 (389)
T PRK06849 80 LIPTCEEVFYLSHAKEELSA-YCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDPEAIRNFMFKTPHTPYVLK 158 (389)
T ss_pred EEECChHHHhHHhhhhhhcC-CcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHhhcCCCCcEEEE
Confidence 999877543 2222233322 466778999999999999999999999999999999999999988877666 8999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGP 308 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~ 308 (519)
|..+.+|.|+.++.+.+++. .... ..+..+|+||||+|.|+++.++..++.+........ .+. .
T Consensus 159 P~~~~~~~~v~~~~~~~~l~----~~~~-----~~~~~~ivQe~I~G~e~~~~~~~~~G~v~~~~~~~~---~~~----~ 222 (389)
T PRK06849 159 PIYSRFVRRVDLLPKEAALK----ELPI-----SKDNPWVMQEFIQGKEYCSYSIVRSGELRAHSCYKP---EYC----A 222 (389)
T ss_pred eCcccCCCeEEEecCHHHhc----cccc-----CCCCCeEEEEEecCCeEEEEEEEECCEEEEEEEeec---ccc----C
Confidence 99999999999998854432 2210 123569999999999999988874443443322111 010 0
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCch
Q 010065 309 NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 309 ~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~ 380 (519)
..+....+.|.. ++ ++.+.+ .+++.++++. |.+++||+++++| ++|+||||||++++.+
T Consensus 223 ~~~~~~~~~~~~--~~----~l~~~~----~~~~~~l~~~--G~~~~df~~~~~g-~~~~iEiNpR~~~g~~ 281 (389)
T PRK06849 223 GSGAQIAFQPIN--HP----RIEEFV----THFVKELNYT--GQISFDFIETENG-DAYPIECNPRTTSGLH 281 (389)
T ss_pred CCCceeEeEECC--cH----HHHHHH----HHHHHhcCce--eEEEEEEEECCCC-CEEEEEecCCCCceeE
Confidence 011111223322 33 344433 3455777765 9999999998766 7999999999987665
|
|
| >KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=233.75 Aligned_cols=377 Identities=23% Similarity=0.300 Sum_probs=272.9
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC--CCcCC-CCCccc-----cC-CCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA--GISNS-GDATCI-----PD-LDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~--~~~~~-~~~~~v-----~~-~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.||||-.-|.....+-+++.+ .+.+++.+..... ..... ++..++ ++ -....+++++++++++++|+|-|
T Consensus 34 ~kvlVANRgEIaIRvFRa~tE-L~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 34 NKVLVANRGEIAIRVFRAATE-LSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred ceeEEecCCcchhHHHHHHhh-hcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 588888777432223334333 3788887764421 11111 111111 01 12234789999999999999999
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEE
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~Vv 227 (519)
| +|.. .+++.....|+.++||+++.+....||...|.+.-++|+|+.+.. .+++.+++.++.++.|+|+|+
T Consensus 113 GYGFLSErs---dFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~ 189 (1176)
T KOG0369|consen 113 GYGFLSERS---DFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVII 189 (1176)
T ss_pred Cccccccch---HHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEE
Confidence 5 5665 467779999999999999999999999999999999999997753 477899999999999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccc-----ccc
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESA-----QDH 298 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~-----~~~ 298 (519)
|.+.|+|++|+++|++.+|+++++.++.++ ..|+ ++.++||+||+- +.+.|..+.|. ++++++-+. +.|
T Consensus 190 KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFG--nG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRH 267 (1176)
T KOG0369|consen 190 KAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFG--NGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRH 267 (1176)
T ss_pred eecccCCCcceEEeechhhHHHHHHHHHHHHHHhcC--CceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhh
Confidence 999999999999999999999999988754 3454 488999999998 89999999864 356655432 233
Q ss_pred ccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCC
Q 010065 299 KRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDP 378 (519)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~ 378 (519)
+.+ ..+.|+..|++++++.+...+++ ..+..|+. -...+||.+|..| +.||||||+|+.--
T Consensus 268 QKV------------VEiAPA~~Lp~~vR~~~~~davk----lAk~vgY~--NAGTvEFLvD~~g-~hYFIEvN~RlQVE 328 (1176)
T KOG0369|consen 268 QKV------------VEIAPAKTLPPEVRDAILTDAVK----LAKHVGYE--NAGTVEFLVDQKG-RHYFIEVNPRLQVE 328 (1176)
T ss_pred cce------------eEecccccCCHHHHHHHHHHHHH----HHHHhCcc--cCCceEEEEccCC-CEEEEEecCceeee
Confidence 332 34789999999999999888764 44666655 5567899999988 89999999999553
Q ss_pred chHHHHHHhCCCHHHHHHHHHhCC-CCCCCcc----cCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEE
Q 010065 379 ECQVLMVRLESDLAEVLLAACRGE-LTGVTLN----WSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIF 451 (519)
Q Consensus 379 ~~~~~~~~~G~d~~~~~i~~~~g~-~~~~~~~----~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~ 451 (519)
.+ .....+|+|+.+..+.++.|. +++..+. ...++++.+.+.-++-... +++ +.+.+|
T Consensus 329 HT-vTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdt--------------GriEVf 393 (1176)
T KOG0369|consen 329 HT-VTEEITGVDLVQAQIHVAEGASLPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDT--------------GRIEVF 393 (1176)
T ss_pred ee-eeeeeccchhhhhhhhhhcCCCcccccccccceeecceEEEEEEeccCccccCCCCC--------------ceEEEE
Confidence 22 444557999999999999998 4444332 1246777776655431111 111 234445
Q ss_pred Eeee----eec----CCCcEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe
Q 010065 452 HAGT----ALD----ADGNFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG 499 (519)
Q Consensus 452 ~~~~----~~~----~~g~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~ 499 (519)
..+. ..+ -.|.+++ .++-+..+++.|.|++-+.++..+++.+.++.|.
T Consensus 394 RSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiRGV 451 (1176)
T KOG0369|consen 394 RSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIRGV 451 (1176)
T ss_pred EeCCCceEeecCccccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhhcce
Confidence 4321 111 1234444 2455678999999999999999999999999884
|
|
| >PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=216.87 Aligned_cols=200 Identities=25% Similarity=0.324 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHcCCCCCCeeec--CCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhc--cCCC
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTF--TDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKN--AFGS 262 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v--~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~--~~~~ 262 (519)
||..++++++++|+|+|++... ++.+++.++++++|||+++||+.++|++|++++++.+||.++++...... .|
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~f-- 78 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAF-- 78 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccc--
Confidence 8999999999999999999887 99999999999999999999999999999999999999999999887542 23
Q ss_pred CCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHH
Q 010065 263 AGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVK 340 (519)
Q Consensus 263 ~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~ 340 (519)
.+..+++|+|++| +|+.|++++|+. +++.+........ -|.+.+....|+..|+++..+++++.+. +
T Consensus 79 g~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~-------~hs~dsi~~~P~~~L~~~~~~~l~~~a~----~ 147 (211)
T PF02786_consen 79 GDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQ-------RHSQDSIEEAPAQTLSDEERQKLREAAK----K 147 (211)
T ss_dssp STS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEE-------ETTEEEEEEES-SSS-HHHHHHHHHHHH----H
T ss_pred ccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccc-------cccccceeEeeccccchHHHHHHHHHHH----H
Confidence 2578999999999 999999999986 4554443221111 1445566788998899999999999875 4
Q ss_pred HHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 341 GMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 341 ~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+.+++++. |++++||.++++++++||+|+|||..-+.. .....+|+|+.++.+++++|.
T Consensus 148 ia~~l~~~--G~~tvef~~~~~~~~~y~lEvNpR~~~~~p-~~e~~tg~dlv~~~~~ia~G~ 206 (211)
T PF02786_consen 148 IARALGYV--GAGTVEFAVDPDDGEFYFLEVNPRLQREHP-VTEKVTGYDLVRVQIRIALGE 206 (211)
T ss_dssp HHHHTT-E--EEEEEEEEEETTTTEEEEEEEESS--TTHH-HHHHHHT--HHHHHHHHHTT-
T ss_pred HHHhhCee--ecceEEEEEccCccceeeecccCCCCCcch-HHHHHHCCCHHHHHHHHHCCC
Confidence 66677754 999999999984448999999999977554 555667999999999999998
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G .... |
| >TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-24 Score=210.70 Aligned_cols=260 Identities=21% Similarity=0.185 Sum_probs=178.5
Q ss_pred HHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECC-ChhhHHHHHHHHHHCCCCe
Q 010065 96 ALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGP-EAPLVSGLANKLVKAGIPT 174 (519)
Q Consensus 96 ~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~-E~~~~~~~a~~le~~gip~ 174 (519)
.+..++++. |+++.++++.+.... .+... ....++|+|++.. +...-..+++.++..|+|+
T Consensus 15 ~l~~a~~~~-g~~~~~~~~~~~~~~----------~~~~~-------~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~ 76 (277)
T TIGR00768 15 MLKEAAEEL-GIDYKVVTPPAIPLT----------FNEGP-------RELAELDVVIVRIVSMFRGLAVARYLESLGVPV 76 (277)
T ss_pred HHHHHHHHc-CCceEEEEhHHcEEe----------ccCCC-------ccCCCCCEEEEechhHhhHHHHHHHHHHCCCee
Confidence 467777665 998888765432110 00000 0023588888832 1111124677789999999
Q ss_pred eCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHH
Q 010065 175 FGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSM 254 (519)
Q Consensus 175 ~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~ 254 (519)
+ ++++++..++||..++++|+++|+|+|++..+.+.+++.++.++++||+|+||..|++|.||.++++.+++..+++..
T Consensus 77 ~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~ 155 (277)
T TIGR00768 77 I-NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHF 155 (277)
T ss_pred e-CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHH
Confidence 8 568999999999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred HhhccCCCCCCcEEEEeccCCcE-EEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHH
Q 010065 255 LLKNAFGSAGCRVIIEEFLEGEE-ASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMES 333 (519)
Q Consensus 255 ~~~~~~~~~~~~~lvEe~I~G~E-~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~ 333 (519)
.... .....+++||||+|.+ +++.++..++.+...........+ ....+.|+ ...|.. ++++. .+.
T Consensus 156 ~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~~~~---~~n~~~g~--~~~~~~-l~~~~----~~~ 222 (277)
T TIGR00768 156 EQLN---GPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITSGHW---RTNLARGG--KAEPCP-LTEEI----EEL 222 (277)
T ss_pred HHhc---ccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCCCch---hhhhhcCC--eeeecC-CCHHH----HHH
Confidence 4210 1124799999999754 555555544444322211111111 11122222 234555 66543 333
Q ss_pred HHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 334 IILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 334 a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
+ .+++.++++ |++++||+++++| ++|++|+|+|||... +...+|+|+.+++++.
T Consensus 223 a----~~~~~~l~~---~~~~vD~~~~~~g-~~~viEiN~~p~~~~---~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 223 A----IKAAKALGL---DVVGIDLLESEDR-GLLVNEVNPNPEFKN---SVKTTGVNIAGKLLDY 276 (277)
T ss_pred H----HHHHHHhCC---CeEEEEEEEcCCC-CeEEEEEcCCcchhh---hHHHHCCCHHHHHHhh
Confidence 3 245567775 5677999999886 799999999998643 3445799999998864
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). |
| >TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-24 Score=210.75 Aligned_cols=263 Identities=20% Similarity=0.142 Sum_probs=179.9
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChhhHHHHHHHHHHCCCC
Q 010065 95 HALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAPLVSGLANKLVKAGIP 173 (519)
Q Consensus 95 ~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~~~~~~a~~le~~gip 173 (519)
..+..++++. |+++..++..+... ..+..+ ....++|++++- .-+.....++..++..|+|
T Consensus 13 ~~l~~al~~~-g~~~~~~~~~~~~~----------~~~~~~-------~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~ 74 (280)
T TIGR02144 13 KMLIEELEKL-GLPYRKIYVPALPL----------PFGERP-------KELEDVDVAIIRCVSQSRALYSARLLEALGVP 74 (280)
T ss_pred HHHHHHHHHc-CCceEEEEhhheEE----------EcCCCc-------cccCCCCEEEEcCcchhhHHHHHHHHHHCCCc
Confidence 4466677666 99988775432111 011000 011368998883 1112222456678999999
Q ss_pred eeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHH
Q 010065 174 TFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDS 253 (519)
Q Consensus 174 ~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~ 253 (519)
++ ++++++.++.||..++++|+++|||+|++..+.+.+++.++.+.++||+|+||..|++|.||.++++.+++.++++.
T Consensus 75 ~~-n~~~~~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~ 153 (280)
T TIGR02144 75 VI-NSSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALGYPVVLKPVIGSWGRLVALIRDKDELESLLEH 153 (280)
T ss_pred EE-CcHHHHHHHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEECCHHHHHHHHHH
Confidence 98 57899999999999999999999999999999888888888888999999999999999999999999999887753
Q ss_pred HHhhccCCCCCCcEEEEeccCC--cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHH
Q 010065 254 MLLKNAFGSAGCRVIIEEFLEG--EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVM 331 (519)
Q Consensus 254 ~~~~~~~~~~~~~~lvEe~I~G--~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~ 331 (519)
.... ....+..+|+|+||+| +++++.++ +++ ..... .+.. .++......| +...|.+ +++++.
T Consensus 154 ~~~~--~~~~~~~~ivQefI~~~~~d~~v~vi-g~~-~~~~~-~r~~---~~~~~~~~~g--~~~~~~~-~~~~~~---- 218 (280)
T TIGR02144 154 KEVL--GGSQHKLFYIQEYINKPGRDIRVFVI-GDE-AIAAI-YRYS---NHWRTNTARG--GKAEPCP-LDEEVE---- 218 (280)
T ss_pred HHhh--cCCcCCeEEEEcccCCCCCceEEEEE-CCE-EEEEE-EEcC---CchhhhhhcC--CceeccC-CCHHHH----
Confidence 2110 0013357999999985 56666554 333 32111 1111 1111111222 2345666 676543
Q ss_pred HHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 332 ESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 332 ~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+.+ .++++++|+ |+++|||+++++| ++|++|||+|||++. +...+|+|+.+.+++.+..+
T Consensus 219 ~~a----~~~~~~lg~---~~~~vD~~~~~~g-~~~v~EvN~~p~~~~---~~~~~g~~~~~~~~~~~~~~ 278 (280)
T TIGR02144 219 ELA----VKAAEAVGG---GVVAIDIFESKER-GLLVNEVNHVPEFKN---SVRVTGVNVAGEILEYAVSL 278 (280)
T ss_pred HHH----HHHHHHhCC---CeEEEEEEEcCCC-CEEEEEEeCCcchhh---hhHhhCCCHHHHHHHHHHHh
Confidence 333 345578885 5778999999876 699999999998854 34557999999999987654
|
The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. |
| >PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=206.92 Aligned_cols=182 Identities=21% Similarity=0.289 Sum_probs=124.2
Q ss_pred HhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCC
Q 010065 184 LEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSA 263 (519)
Q Consensus 184 ~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~ 263 (519)
+++||..|+++++++|+|+|++..+.+.+++.++.+.++||+||||..++||.||.++++.+|+.++++.+..... ..
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~--~~ 78 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP--LG 78 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS---H
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--cC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999998864311 01
Q ss_pred CCcEEEEeccCCcEEEEEEEEeCCeeEEecccccccc-ccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 010065 264 GCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKR-VGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGM 342 (519)
Q Consensus 264 ~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~ 342 (519)
...+|+||||+|.|+++.++..++.++.+...+.... ...... ....+...+.+ ....+++.+.+ .+++
T Consensus 79 ~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~----~~~~ 148 (184)
T PF13535_consen 79 NGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYVRQSPGHFSG---GVPTGYSVPSE---PPLPEELRDLA----RKLL 148 (184)
T ss_dssp SSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEEEEETCCCSS---SEEEEEEES-----CEHHHHHHHHH----HHHH
T ss_pred CccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEeccccccccc---ceeeeeecccc---cccHHHHHHHH----HHHH
Confidence 3689999999999999999985554443333222111 111000 01122233322 22334555544 4567
Q ss_pred HHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCc
Q 010065 343 SAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPE 379 (519)
Q Consensus 343 ~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~ 379 (519)
.++|+. +|++|+||+++++| +++++|||||+||+.
T Consensus 149 ~~~g~~-~G~~~id~~~~~~g-~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 149 RALGYR-NGFFHIDFIVDPDG-ELYFIEINPRFGGGS 183 (184)
T ss_dssp HHHT---SEEEEEEEEEETCC-EEEEEEEESS--STT
T ss_pred HHcCCc-eEEEEEEEEEeCCC-CEEEEEECccCCCCC
Confidence 888985 49999999999996 899999999998854
|
|
| >PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=211.28 Aligned_cols=277 Identities=16% Similarity=0.196 Sum_probs=183.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCCc-CCCCCccccCCC-C---CCHHHHHHHHHHcCCcEEEE-C
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGIS-NSGDATCIPDLD-V---LDGDAVISFCRKWSVGLVVV-G 154 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~~-~~~~~~~v~~~d-~---~d~~~l~~~~~~~~id~Vi~-g 154 (519)
+++|..+|+-. ..++.+.++++ |++++.+.... .... .....+.+..+| . .|.+.+.++.+ .+.. ++| |
T Consensus 18 ~~~i~~~~shs-aL~I~~gAkee-Gf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~~-~~~i-iIp~g 93 (358)
T PRK13278 18 NITIATIGSHS-SLQILKGAKKE-GFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLRE-MNAI-LIPHG 93 (358)
T ss_pred cceEEEEeccc-HHHHHHHHHHC-CCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHhh-cCcE-EEeCC
Confidence 45788888763 45688888877 99999886442 1111 111111111222 2 22233333333 3332 555 5
Q ss_pred CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCC
Q 010065 155 PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAA 234 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~g 234 (519)
++.+.+ + ++.++.+++|++| +.+++.+..||..++++|+++|||+|++ +.+.+ +++||+||||..+.|
T Consensus 94 s~v~y~-~-~d~l~~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~--~~~~~-------~i~~PvIVKp~~g~g 161 (358)
T PRK13278 94 SFVAYL-G-LENVEKFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRK--YESPE-------DIDRPVIVKLPGAKG 161 (358)
T ss_pred Ccceee-c-HHHHHHCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCE--eCCHH-------HcCCCEEEEeCCCCC
Confidence 565544 3 3445578999885 8889999999999999999999999996 44543 357999999999999
Q ss_pred CCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEe---CCeeEEeccccccccc----c-----
Q 010065 235 GKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVD---GENAIPLESAQDHKRV----G----- 302 (519)
Q Consensus 235 s~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~d---g~~~~~~~~~~~~~~~----~----- 302 (519)
|+|++++++.+|+.++++.+.....++. .+.++|||||.|.||+++++.. |+ +..+...+++... +
T Consensus 162 gkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~iIEEfI~G~e~sv~~f~s~~~~~-~e~l~id~r~~~~~d~~~r~p~~ 239 (358)
T PRK13278 162 GRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAIIQEYVVGVPYYFHYFYSPIKNR-LELLGIDRRYESNIDGLVRIPAK 239 (358)
T ss_pred CCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEEEEecCCCcEEEEEEEEeccCCe-EEEEeeceeeeecccceeeccch
Confidence 9999999999999999998865433322 5789999999999999999964 44 3333332222110 0
Q ss_pred ---CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCceEEEEEeCCC-CC
Q 010065 303 ---DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLPKLIEYNVRF-GD 377 (519)
Q Consensus 303 ---~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~~viEiN~R~-G~ 377 (519)
.....+.....+ ..|+. +.+.+...+.+.+.+.+..+.+.+ +.. .|++++|+++++++ ++|++|+|+|+ ||
T Consensus 240 ~~~~~~~~p~~v~~G-n~P~~-~resll~~v~~~~~~~v~a~~~~~~~~~-~Gp~~ie~~~~~d~-~~~V~Eis~R~~gg 315 (358)
T PRK13278 240 DQLELGIDPTYVVVG-NIPVV-LRESLLPQVFEYGERFVETSKELVPPGM-IGPFCLESVVTDNL-EIVVFEISARIVAG 315 (358)
T ss_pred hhhhcccCCceeEec-ceecc-chHhHHHHHHHHHHHHHHHHHHhcCccc-cCCceEEEEEcCCC-CEEEEEEeCcccCC
Confidence 011122222233 35776 777777777776654333333334 332 49999999999887 79999999999 76
Q ss_pred Cch
Q 010065 378 PEC 380 (519)
Q Consensus 378 ~~~ 380 (519)
|..
T Consensus 316 tn~ 318 (358)
T PRK13278 316 TNL 318 (358)
T ss_pred ccc
Confidence 544
|
|
| >COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=203.26 Aligned_cols=348 Identities=18% Similarity=0.134 Sum_probs=229.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec---CCCCC-cC--C--CCCccccCCCCCCHHHHHHHHHH--cCCcE-
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAP---GNAGI-SN--S--GDATCIPDLDVLDGDAVISFCRK--WSVGL- 150 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~---~~~~~-~~--~--~~~~~v~~~d~~d~~~l~~~~~~--~~id~- 150 (519)
+.|+|++|...+. ++..+.+. |+++..+.- .+... .. . .....+..+...|.+.|++.+.+ .++|+
T Consensus 11 ~~kiLviGvntR~--vveSA~kl-Gf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ 87 (389)
T COG2232 11 SCKILVIGVNTRP--VVESASKL-GFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAP 87 (389)
T ss_pred cceEEEEeecchH--hHHHHHhc-CeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhccee
Confidence 4689999998754 55665555 898877642 22110 00 0 00011112235567888888776 45888
Q ss_pred EEEC-CChhhHHHHHHHHHHCCCCeeCCcHH-HHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEE
Q 010065 151 VVVG-PEAPLVSGLANKLVKAGIPTFGPSSE-AAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 151 Vi~g-~E~~~~~~~a~~le~~gip~~g~~~~-~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvK 228 (519)
++++ +...+- .--.++.++.|++++ ....+.+|..+.+.+..+|+|.|+....... +.--.++|+|
T Consensus 88 ii~~sg~e~l~-----~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e~~-------~~gekt~IlK 155 (389)
T COG2232 88 IIPFSGFEALR-----TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIEPL-------EEGEKTLILK 155 (389)
T ss_pred eeecccccccc-----ccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhhhh-------hhcceeeEEe
Confidence 5553 222210 012456788898888 8888999999999999999999986544211 1223689999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCC-
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTG- 307 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~- 307 (519)
|+.|+||. +.++.-.++ . ....+|.|+||+|+.+|+.++.+|...+++....+... +..+
T Consensus 156 Pv~GaGG~-~el~~~~Ee-------~--------~~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~---~~~~~ 216 (389)
T COG2232 156 PVSGAGGL-VELVKFDEE-------D--------PPPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIID---GLRGE 216 (389)
T ss_pred eccCCCce-eeecccccc-------c--------CCcceehhhhcCCceeEEEEEecCcceEEEEEeeeeec---ccccc
Confidence 99999885 222221111 1 23789999999999999999999987766655443221 1111
Q ss_pred C-CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH
Q 010065 308 P-NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR 386 (519)
Q Consensus 308 ~-~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~ 386 (519)
+ .+...|..+|.+.... +++.+.+. .+...+|+. |...|||.+++.| +|+||||||+.|+.- .+...
T Consensus 217 ~~~f~Y~GNlTP~~~~~~---ee~e~la~----elV~~lgL~--GsnGVDfvl~d~g--pyViEVNPR~qGt~e-~iE~s 284 (389)
T COG2232 217 YSQFVYKGNLTPFPYEEV---EEAERLAE----ELVEELGLV--GSNGVDFVLNDKG--PYVIEVNPRIQGTLE-CIERS 284 (389)
T ss_pred cccceeccCcCCCcchhh---HHHHHHHH----HHHHHhccc--cccccceEeecCC--cEEEEecCcccchHH-HHHHh
Confidence 1 1112344567653222 44444443 344677776 9999999999999 999999999988665 67777
Q ss_pred hCCCHHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEec
Q 010065 387 LESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIAT 466 (519)
Q Consensus 387 ~G~d~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 466 (519)
+|+|++++++.+..|+++.. ++. .++++..++.++. . ..+. .+ -..+++ +.+ ..|+++..
T Consensus 285 ~giNl~~lHi~af~G~LpEr-~kp-r~~a~krILyap~---~----v~v~---~l----~~~~~~---DiP-~~Gtviek 344 (389)
T COG2232 285 SGINLFRLHIQAFDGELPER-PKP-RGYACKRILYAPR---T----VRVP---IL----KLSWTH---DIP-RPGTVIEK 344 (389)
T ss_pred cCCCHHHHHHHHhcCcCcCC-CCc-ceeEEeEEEeccc---e----eecc---cc----cccccc---cCC-CCCcccCC
Confidence 89999999999999997543 222 3577777777654 1 1121 11 012222 333 57889999
Q ss_pred CCeEEEEEEecCCHHHHHHHHHHHhhccc
Q 010065 467 GGRVLGVTAKGKDVEEAQDRAYLAVEEIN 495 (519)
Q Consensus 467 ~~rvg~vi~~g~t~~ea~~~a~~~~~~i~ 495 (519)
+..+++|+|.+.|+++|...+++..+++.
T Consensus 345 gePl~sviA~~nt~~~a~~~~er~~ervk 373 (389)
T COG2232 345 GEPLCSVIASSNTRSGAESMAERLAERVK 373 (389)
T ss_pred CCceeeeeeccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887664
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-23 Score=215.04 Aligned_cols=309 Identities=18% Similarity=0.265 Sum_probs=246.5
Q ss_pred CCCcccccCCCCCCCccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCC
Q 010065 67 SQPSVSVNAPTNAGQRVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDV 133 (519)
Q Consensus 67 ~e~~vS~~s~~~~~~~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~ 133 (519)
.||||+... ..++|+|+|-. ...-++.|++. |+.++.++- ||.+.+. +.++.+ +++.
T Consensus 910 ~~hDv~F~~-------~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~-g~kTimvNy-NPETVSTDyDecdrL-YFee 979 (1435)
T KOG0370|consen 910 TEHDVDFNE-------HGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKL-GKKTIMVNY-NPETVSTDYDECDRL-YFEE 979 (1435)
T ss_pred cccccccCC-------CceEEEcccceecccceeechhhhhHHHHHHHc-CCceEEEec-CcccccCchHHHhhH-hHhh
Confidence 788888663 46899998831 24457777776 999998842 3333222 122333 4555
Q ss_pred CCHHHHHHHHHHcCCcEEEE--CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCH
Q 010065 134 LDGDAVISFCRKWSVGLVVV--GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDP 211 (519)
Q Consensus 134 ~d~~~l~~~~~~~~id~Vi~--g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~ 211 (519)
-..+.++++=..++..+++. |+..+- .++-.|.+.|++++|.+++.+..+.|+..+.+.|.+.|+..|+|..+++.
T Consensus 980 is~E~vmDiYe~E~~~G~iis~GGQ~pn--NiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~ 1057 (1435)
T KOG0370|consen 980 ISYERVMDIYELENSEGIIISVGGQLPN--NIALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSL 1057 (1435)
T ss_pred hhhhhhhhhhhhccCCceEEEecCcCcc--hhhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhhhccH
Confidence 56778888877778888876 666654 45666889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE-eCCee
Q 010065 212 NAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV-DGENA 289 (519)
Q Consensus 212 ~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~-dg~~~ 289 (519)
+++.++++++||||+|.|+.--++.-+.++.+.+||+.+++.+..- +.+.++++.+||+| +|+.++++. ||+.+
T Consensus 1058 ~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~v----s~dhPVVisKfie~AkEidvDAVa~~G~~~ 1133 (1435)
T KOG0370|consen 1058 EEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAV----SPDHPVVISKFIEGAKEIDVDAVASDGKVL 1133 (1435)
T ss_pred HHHHHHHHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhc----CCCCCEEhHHhhcccceechhhhccCCeEE
Confidence 9999999999999999999988899999999999999999988643 46789999999999 999999996 66633
Q ss_pred EEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEE
Q 010065 290 IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLI 369 (519)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~vi 369 (519)
. . .+.+|-. ++|.|.|......|...++++..+++.+.+. ++.+++.+. |+++++|+.+++. +.+|
T Consensus 1134 ~-h-aiSEHvE----nAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~----ki~~a~~it--GPfN~Q~i~k~n~--lkVI 1199 (1435)
T KOG0370|consen 1134 V-H-AISEHVE----NAGVHSGDATLVLPPQDLSADTLERIKDIAA----KVAKALKIT--GPFNMQIIAKDNE--LKVI 1199 (1435)
T ss_pred E-E-ehhhhhh----cccccCCceeEeCCchhcCHHHHHHHHHHHH----HHHHHhccc--CCceEEEEecCCe--EEEE
Confidence 2 2 2233322 5778888888888988899999999998774 455777766 9999999998876 9999
Q ss_pred EEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCCC
Q 010065 370 EYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGV 406 (519)
Q Consensus 370 EiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~~ 406 (519)
|+|-|...+.. .....+|+||.++..+...|....+
T Consensus 1200 ECN~RaSRSFP-FvSKtlgvdfi~~At~~i~g~~~~~ 1235 (1435)
T KOG0370|consen 1200 ECNVRASRSFP-FVSKTLGVDFIALATRAIMGVPVPP 1235 (1435)
T ss_pred Eeeeeeecccc-ceehhcCchHHHHHHHHHhCCCCCC
Confidence 99999976554 3444569999999999999974443
|
|
| >KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-22 Score=214.54 Aligned_cols=336 Identities=18% Similarity=0.254 Sum_probs=254.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--
Q 010065 133 VLDGDAVISFCRKWSVGLVVVG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK-- 206 (519)
Q Consensus 133 ~~d~~~l~~~~~~~~id~Vi~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~-- 206 (519)
..+.+-+++++++.++|+|.+| +|.+. +-+.|...||-++||+..++....||....-+++.+|+|+.+|-
T Consensus 123 yANVdlIvdiAe~~~VdAVWaGWGHASENP~---LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS 199 (2196)
T KOG0368|consen 123 YANVDLIVDIAERTDVDAVWAGWGHASENPE---LPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGS 199 (2196)
T ss_pred cccHHHHHHHHHhcccceEeecccccccCcc---hHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCC
Confidence 3458999999999999999995 57775 45569999999999999999999999999999999999998752
Q ss_pred ------------------------ecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCC
Q 010065 207 ------------------------TFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGS 262 (519)
Q Consensus 207 ------------------------~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~ 262 (519)
.+.+.+|..++++.+|||+++|.+.|+||+|+++|++.+|+...+++...+ -
T Consensus 200 ~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E----v 275 (2196)
T KOG0368|consen 200 GVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----V 275 (2196)
T ss_pred cceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhh----C
Confidence 123567777888999999999999999999999999999999999988754 3
Q ss_pred CCCcEEEEeccCC-cEEEEEEEEeC-CeeEEecc-----ccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHH
Q 010065 263 AGCRVIIEEFLEG-EEASFFALVDG-ENAIPLES-----AQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESII 335 (519)
Q Consensus 263 ~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~ 335 (519)
++.++++.+...+ +.+.|..+.|. ++++.+.. .++|+.+.+ -.|+.+.+.+..+++.+.|+
T Consensus 276 PGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIE------------EAPatIap~etf~~Me~~Av 343 (2196)
T KOG0368|consen 276 PGSPIFLMKLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIE------------EAPATIAPPETFKKMEQAAV 343 (2196)
T ss_pred CCCceeeeecccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHh------------hCCcccCCHHHHHHHHHHHH
Confidence 5688999999998 99999999864 33443322 234555443 23777678888999998886
Q ss_pred HHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCC----CCC-----
Q 010065 336 LPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGEL----TGV----- 406 (519)
Q Consensus 336 ~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~----~~~----- 406 (519)
+ ..+..| |.+...||+.+.++.+++||+|.|||..- .+......+|+|++.+.+++++|.+ ++.
T Consensus 344 r----Lak~VG--YvSAGTVEYLYsp~d~~fyFLELNPRLQV-EHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg 416 (2196)
T KOG0368|consen 344 R----LAKLVG--YVSAGTVEYLYSPDDGEYYFLELNPRLQV-EHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYG 416 (2196)
T ss_pred H----HHHhhc--ceecceEEEEEecCCCcEEEEecCccccc-cCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcC
Confidence 4 445556 56999999999986669999999999955 2334555679999999999999973 110
Q ss_pred -------C-------cccCCCcEEEEEEecCCCCC--CCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEe-cCCe
Q 010065 407 -------T-------LNWSPGSAMVVVMASKGYPG--SYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIA-TGGR 469 (519)
Q Consensus 407 -------~-------~~~~~~~a~~~~l~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~r 469 (519)
+ ...++++.+...+..++ |. .....-.|..+..- ..+++|-|.. +...|.+.. +++.
T Consensus 417 ~~~~GdS~idfe~~~~p~pkgHciA~RITsEd-PddgFkPSsG~v~eLnFr--SssnvWgYFS---V~~~g~iHeFadSQ 490 (2196)
T KOG0368|consen 417 LEPTGDSPIDFENAKLPCPKGHCIAARITSED-PDDGFKPSSGTVQELNFR--SSSNVWGYFS---VGNGGGIHEFADSQ 490 (2196)
T ss_pred CCCCCCCCCChhhccCCCCCceEEEEEeeccC-CCCCcCCCCCeeEEeccC--CCCCeeEEEE---ecCCCceeeccccc
Confidence 0 11234667777766654 32 11122234443321 2346665532 113455655 6788
Q ss_pred EEEEEEecCCHHHHHHHHHHHhhccccCCee
Q 010065 470 VLGVTAKGKDVEEAQDRAYLAVEEINWPGGF 500 (519)
Q Consensus 470 vg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~ 500 (519)
+||+.+.|+|+++|++++--+++.+.+.|.+
T Consensus 491 FGHiFa~Ge~R~eAi~nMv~aLKelsIRgdF 521 (2196)
T KOG0368|consen 491 FGHIFAFGESRQEAIANMVVALKELSIRGDF 521 (2196)
T ss_pred cceeeeecCcHHHHHHHHHHHHHheeecccc
Confidence 9999999999999999999999999998854
|
|
| >PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=176.31 Aligned_cols=165 Identities=24% Similarity=0.266 Sum_probs=127.3
Q ss_pred HHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEe-CCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEecc
Q 010065 195 CDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA-DGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL 273 (519)
Q Consensus 195 l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP-~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I 273 (519)
|+++|||+|+|..+.+.+++.++++++|||+|+|+ ..|..++|..++++.+|+..++..+ ....+|+|+||
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~~v 72 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEEFV 72 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE--
T ss_pred CcccCCCCCCeEEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEecc
Confidence 68999999999999999999999999999999995 6778899999999999999999887 35899999999
Q ss_pred CC-cEEEEEEEEeCC-eeEEecc--ccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 010065 274 EG-EEASFFALVDGE-NAIPLES--AQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKF 349 (519)
Q Consensus 274 ~G-~E~sv~~l~dg~-~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~ 349 (519)
+. +|+++-+.++.. .+..++. .......+. ..+.|++ +++++.+++++.+. +++.+++.
T Consensus 73 ~f~~EiSvivaR~~~G~~~~yp~~en~~~~~il~----------~s~~Pa~-i~~~~~~~a~~ia~----~i~~~l~~-- 135 (172)
T PF02222_consen 73 PFDREISVIVARDQDGEIRFYPPVENVHRDGILH----------ESIAPAR-ISDEVEEEAKEIAR----KIAEALDY-- 135 (172)
T ss_dssp -ESEEEEEEEEEETTSEEEEEEEEEEEEETTEEE----------EEEESCS-S-HHHHHHHHHHHH----HHHHHHTS--
T ss_pred CCcEEEEEEEEEcCCCCEEEEcCceEEEECCEEE----------EEECCCC-CCHHHHHHHHHHHH----HHHHHcCc--
Confidence 98 999999998543 3333333 332223332 4578999 89998888888764 67777775
Q ss_pred eeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 350 VGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 350 ~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
.|++.||||++++|.++|++||.|||..+.++++.
T Consensus 136 vGv~~VE~Fv~~~g~~v~vNEiaPRpHnSGh~Ti~ 170 (172)
T PF02222_consen 136 VGVLAVEFFVTKDGDEVLVNEIAPRPHNSGHWTIE 170 (172)
T ss_dssp SEEEEEEEEEETTSTEEEEEEEESS--GGGGGHHH
T ss_pred EEEEEEEEEEecCCCEEEEEeccCCccCcccEeee
Confidence 49999999999988339999999999999987764
|
This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A .... |
| >PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=185.59 Aligned_cols=298 Identities=18% Similarity=0.198 Sum_probs=184.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCC-cCC-CCCccccCCC-CCC--HHHHHHHHHHcCCcEEEECC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGI-SNS-GDATCIPDLD-VLD--GDAVISFCRKWSVGLVVVGP 155 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~-~~~-~~~~~v~~~d-~~d--~~~l~~~~~~~~id~Vi~g~ 155 (519)
+.+|..+|+.. ..++..-++++ |.+++.+.... ... ... ...+.+..+| ..| -+.+.+.+++.+. .++|.+
T Consensus 17 ~~~i~t~~SHs-al~i~~gAk~e-gf~t~~v~~~~r~~~Y~~f~~~~d~~i~~~~f~~~~~~~~~~~l~~~n~-i~iPh~ 93 (366)
T PRK13277 17 KVKIGVLASHS-ALDVFDGAKDE-GFRTIAVCQKGRERTYREFKGIVDEVIVLDKFKDILSEKVQDELREENA-IFVPNR 93 (366)
T ss_pred ccEEEEEecch-HHHHhccHHhc-CCcEEEEEcCCCcchhhhhccccceEEEecchhhhhhHHHHHHHHHCCe-EEecCC
Confidence 45788888873 23455555656 99998886442 111 111 0111110122 111 1234444444332 344532
Q ss_pred ChhhHHHHHHHHH-HCCCCeeCCcHHHHHHh--cCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCC
Q 010065 156 EAPLVSGLANKLV-KAGIPTFGPSSEAAALE--GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGL 232 (519)
Q Consensus 156 E~~~~~~~a~~le-~~gip~~g~~~~~~~~~--~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g 232 (519)
--....++ +..| .+.+|++|+ -...++. +||..+.++|+++||++|++.. ++ +++.+|+||||..+
T Consensus 94 sf~~y~g~-~~ie~~~~vp~fGn-r~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~~--~p-------~eId~PVIVKp~~a 162 (366)
T PRK13277 94 SFAVYVGY-DAIENEFKVPIFGN-RYLLRWEERTGEKNYYWLLEKAGIPYPKLFK--DP-------EEIDRPVIVKLPEA 162 (366)
T ss_pred CeEEEecH-HHHhhcCCCCcccC-HHHhhhhhccCHHHHHHHHHHcCCCCceeec--Cc-------cccCccEEEEECCC
Confidence 22222243 3355 689999975 3344444 8898888899999999999765 22 35689999999999
Q ss_pred CC--CCcEEEeCCHHHHHHHHHHHHhhccCC-CCCCcEEEEeccCCcEEEEEEEEe--CCeeEEeccccccccccC----
Q 010065 233 AA--GKGVIVAMTLEEAYEAVDSMLLKNAFG-SAGCRVIIEEFLEGEEASFFALVD--GENAIPLESAQDHKRVGD---- 303 (519)
Q Consensus 233 ~g--s~GV~~v~~~~el~~a~~~~~~~~~~~-~~~~~~lvEe~I~G~E~sv~~l~d--g~~~~~~~~~~~~~~~~~---- 303 (519)
.| |+|+++++|.+|+....+.+....... ..-.+++|||||.|.+|+++++.+ .+.+..+...+++....|
T Consensus 163 sG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r 242 (366)
T PRK13277 163 KRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVR 242 (366)
T ss_pred CCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeeccccccccccc
Confidence 99 999999999999998877764311110 112466899999999999999976 333333333221111000
Q ss_pred --------CCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCeeeEEEEEEEEEcCCCceEEEEE
Q 010065 304 --------GDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEG----CKFVGVLYAGLMIEKKSGLPKLIEY 371 (519)
Q Consensus 304 --------~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g----~~~~G~~~vdf~~~~~g~~~~viEi 371 (519)
....+....+|+ .|.. +.+.+.+.+.+.+. ++..+++ -...|++++|+++++++ ++|++||
T Consensus 243 ~pa~~ql~~~~~p~~vv~G~-~p~t-~rEslle~v~e~ge----r~v~a~~~~~~pg~iGpf~lQ~iv~~d~-~~~V~EI 315 (366)
T PRK13277 243 LPAPQQLKLNEEPRYIEVGH-EPAT-IRESLLEKVFEIGE----KFVEATKELYPPGIIGPFTLQTIVTPDL-DFVVYDV 315 (366)
T ss_pred cChhhhhhcccCCceEEEcC-cccc-chHHHHHHHHHHHH----HHHHHhhhhcCcccccceEEEEEEcCCC-cEEEEEE
Confidence 011111222333 4555 66666677776654 3334433 12349999999999877 8999999
Q ss_pred eCCCCCCchHHHHHHhCCCHHHHHHH--HHhCC
Q 010065 372 NVRFGDPECQVLMVRLESDLAEVLLA--ACRGE 402 (519)
Q Consensus 372 N~R~G~~~~~~~~~~~G~d~~~~~i~--~~~g~ 402 (519)
|||+||+.. +...+|.|+..+++. +.+|+
T Consensus 316 npR~gGGtn--l~~~aGs~y~~l~~~~~ms~Gr 346 (366)
T PRK13277 316 APRIGGGTN--VYMGVGSPYSKLYFGKPMSTGR 346 (366)
T ss_pred cCCcCCCcc--ceeecCCCcHHHHhcCccccCC
Confidence 999977655 444469999999998 88887
|
|
| >COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=178.42 Aligned_cols=229 Identities=19% Similarity=0.308 Sum_probs=164.2
Q ss_pred cCCcEEEE--C-CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHH-HHh
Q 010065 146 WSVGLVVV--G-PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYI-QEE 221 (519)
Q Consensus 146 ~~id~Vi~--g-~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~-~~~ 221 (519)
...|++++ + .-+. ...+++.+|..|++++ +++.++..|.||..+.+++...|+|+|++.++.+.++...+. +.+
T Consensus 77 ~~~D~i~~R~~~~~~~-~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~ 154 (318)
T COG0189 77 DELDVIIMRKDPPFDF-ATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHL 154 (318)
T ss_pred ccCCEEEEecCCchhh-HHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhc
Confidence 36789998 2 2222 2356778999999999 999999999999999999999999999999999986665554 556
Q ss_pred CCCEEEEeCCCCCCCcEEEeCCHH-HHHHHHHHHHhhccCCCCCCcEEEEeccCC--cEEEEEEEEeCCeeEEe-ccccc
Q 010065 222 GAPIVVKADGLAAGKGVIVAMTLE-EAYEAVDSMLLKNAFGSAGCRVIIEEFLEG--EEASFFALVDGENAIPL-ESAQD 297 (519)
Q Consensus 222 g~P~VvKP~~g~gs~GV~~v~~~~-el~~a~~~~~~~~~~~~~~~~~lvEe~I~G--~E~sv~~l~dg~~~~~~-~~~~~ 297 (519)
|||+|+||.+|++|+||.++++.+ ++.+.++.+... ....+|+||||+- +..-.-++.++. +.+. +..+
T Consensus 155 g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~~~~-~~~~y~~~R- 227 (318)
T COG0189 155 GFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVGGGE-VVAIYALAR- 227 (318)
T ss_pred CCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEeCCE-EeEEeeecc-
Confidence 799999999999999999999999 999888887531 2246999999985 344444444443 3322 2111
Q ss_pred cccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCC
Q 010065 298 HKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGD 377 (519)
Q Consensus 298 ~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~ 377 (519)
...--++....+.|+.. .|.+ ++++..+...+ +..++|+.+.| ||++.+++| .||+|||..|++
T Consensus 228 ~~~~~~~R~N~a~Gg~~--e~~~-l~~e~~elA~k--------aa~~lGl~~~G---VDiie~~~g--~~V~EVN~sP~~ 291 (318)
T COG0189 228 IPASGDFRSNLARGGRA--EPCE-LTEEEEELAVK--------AAPALGLGLVG---VDIIEDKDG--LYVTEVNVSPTG 291 (318)
T ss_pred ccCCCCceeeccccccc--cccC-CCHHHHHHHHH--------HHHHhCCeEEE---EEEEecCCC--cEEEEEeCCCcc
Confidence 11122334444555543 3555 77765544433 33677865544 999999888 999999998855
Q ss_pred CchHHHHHHhCCCHHHHHHHHHhC
Q 010065 378 PECQVLMVRLESDLAEVLLAACRG 401 (519)
Q Consensus 378 ~~~~~~~~~~G~d~~~~~i~~~~g 401 (519)
-. .+....|+|....+.+.+..
T Consensus 292 ~~--~i~~~~g~~~~~~~~~~ie~ 313 (318)
T COG0189 292 KG--EIERVTGVNIAGLIIDAIEK 313 (318)
T ss_pred cc--chhhhcCCchHHHHHHHHHH
Confidence 33 24445688998888877643
|
|
| >PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-21 Score=172.94 Aligned_cols=159 Identities=25% Similarity=0.312 Sum_probs=85.0
Q ss_pred hcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCC
Q 010065 185 EGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264 (519)
Q Consensus 185 ~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~ 264 (519)
|.||.+++++|+++|||+|.+....... ...+|+|+||.+|+||.|++++++.+++.......
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~~-------~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~~---------- 63 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEPE-------PIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNKL---------- 63 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EESS---------SSSEEEEESS-------B--SS--TTE----------------
T ss_pred CCCHHHHHHHHHccCCCCCCcccccccc-------ccCCcEEEEeCCCCCCCCeEEECCchhhccccccc----------
Confidence 6899999999999999999433222211 23689999999999999999999998877654332
Q ss_pred CcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010065 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSA 344 (519)
Q Consensus 265 ~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a 344 (519)
.++||||+|.++|+.++.+++....+...+......+ ..+. -.+...|+. .+ ...++.+.+ .++..+
T Consensus 64 --~i~Qe~i~G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~--~~~~--~~G~~~~~~-~~--~~~~~~~~~----~~i~~~ 130 (161)
T PF02655_consen 64 --RIVQEFIEGEPYSVSFLASGGGARLLGVNRQLIGNDD--GRFR--YCGGIVPAD-TP--LKEEIIELA----RRIAEA 130 (161)
T ss_dssp ---EEEE---SEEEEEEEEE-SSSEEEEEEEEEEEET------TE--EEEEEES-------HHHHHHHHH----HHHHTT
T ss_pred --eEEeeeeCCEEeEEEEEEeCCceEEEEechHhhcccc--ceee--ecccccccC-Cc--hHHHHHHHH----HHHHHH
Confidence 2999999999999999987765555555544322211 1111 124556765 22 245555554 355577
Q ss_pred c-CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCC
Q 010065 345 E-GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGD 377 (519)
Q Consensus 345 ~-g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~ 377 (519)
+ |+. |++.|||++++++ +|+||||||+++
T Consensus 131 l~gl~--G~~giD~I~~~~~--~~viEINPR~t~ 160 (161)
T PF02655_consen 131 LPGLR--GYVGIDFILDDGG--PYVIEINPRFTG 160 (161)
T ss_dssp STT----EEEEEEEEESS-S--EEEEEEESS--G
T ss_pred cCCCe--eeEeEEEEEeCCc--EEEEEEcCCCCC
Confidence 7 766 9999999999866 999999999965
|
This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A. |
| >PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=169.14 Aligned_cols=185 Identities=23% Similarity=0.348 Sum_probs=101.4
Q ss_pred hcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCC
Q 010065 185 EGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSA 263 (519)
Q Consensus 185 ~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~-g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~ 263 (519)
+.||..+.++|+++|||+|++..+.+.+++.++++++ ++|+|+||..|+.|.||.++++.+++...++.... .
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~------~ 74 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKR------L 74 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH-----------
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHh------c
Confidence 4699999999999999999999999999999999999 89999999999999999999999999988776532 3
Q ss_pred CCcEEEEeccCC---cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHH
Q 010065 264 GCRVIIEEFLEG---EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVK 340 (519)
Q Consensus 264 ~~~~lvEe~I~G---~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~ 340 (519)
...+++|+||+. +++.|.++ +|+ ++...... ..-.++....+.|+. ..|.. ++++..+.+. +
T Consensus 75 ~~~~~~Q~fI~~~~g~d~Rv~Vi-g~~-vv~a~~r~--~~~~d~r~n~~~g~~--~~~~~-l~~e~~~~a~--------~ 139 (190)
T PF08443_consen 75 ENPILVQEFIPKDGGRDLRVYVI-GGK-VVGAYRRS--SPEGDFRTNLSRGGK--VEPYD-LPEEIKELAL--------K 139 (190)
T ss_dssp TTT-EEEE----SS---EEEEEE-TTE-EEEEEE----------------------EE-----HHHHHHHH--------H
T ss_pred cCcceEeccccCCCCcEEEEEEE-CCE-EEEEEEEe--cCcccchhhhccCce--EEEec-CCHHHHHHHH--------H
Confidence 478899999985 47887666 444 44322111 111233333444443 34555 6665444333 4
Q ss_pred HHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 341 GMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 341 ~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
+.+++|+.+ +.||++.++++ +||+|||+.||... +...+|+|+.+.+++.
T Consensus 140 ~~~~lgl~~---~giDi~~~~~~--~~v~EvN~~~~~~~---~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 140 AARALGLDF---AGIDILDTNDG--PYVLEVNPNPGFRG---IEEATGIDIAEEIAEY 189 (190)
T ss_dssp HHHHTT-SE---EEEEEEEETTE--EEEEEEETT---TT---HHHHH---HHHHHHHH
T ss_pred HHHHhCCCE---EEEEEEecCCC--eEEEEecCCchHhH---HHHHHCcCHHHHHHhh
Confidence 557888765 45997666655 99999999998743 3345799999998875
|
It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A. |
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=186.24 Aligned_cols=233 Identities=20% Similarity=0.244 Sum_probs=163.6
Q ss_pred HHHHHHHHHcCCcEEEECCChhhHHHHH-----HHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCH
Q 010065 137 DAVISFCRKWSVGLVVVGPEAPLVSGLA-----NKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDP 211 (519)
Q Consensus 137 ~~l~~~~~~~~id~Vi~g~E~~~~~~~a-----~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~ 211 (519)
+.|++.+++.++++++...|+..++ +. ..++. .+.- -+++.++.++.||..++++|+++|||+|++..+.+.
T Consensus 245 ~~Ii~~a~~~Gi~~~~~~se~~~~~-L~~g~~~~~~~~-s~~~-~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~ 321 (547)
T TIGR03103 245 RIIVDEARRRGIEVEVLDAEGGLFR-LSLGGRSIRCRE-SLSE-LTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG 321 (547)
T ss_pred HHHHHHHHHcCCcEEEECCCCCEEE-ecCCceEEEEEe-ccCC-CCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH
Confidence 7899999999999999876665431 10 00000 1111 268899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCcEEE-eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeE
Q 010065 212 NAAKQYIQEEGAPIVVKADGLAAGKGVIV-AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAI 290 (519)
Q Consensus 212 ~~~~~~~~~~g~P~VvKP~~g~gs~GV~~-v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~ 290 (519)
+++.++++++| |+||||..|++|+||.+ +++.+++.++++.+.. .+..+|||+||+|.|+.+.++ +|+ ++
T Consensus 322 ~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~------~~~~vlvEe~i~G~d~Rv~Vi-gg~-vv 392 (547)
T TIGR03103 322 EAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQ------FCDRVLLERYVPGEDLRLVVI-DFE-VV 392 (547)
T ss_pred HHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHh------cCCcEEEEEeccCCeEEEEEE-CCE-EE
Confidence 99988888998 79999999999999997 9999999999998864 346899999999999999665 444 22
Q ss_pred Eecccccc---------------------cccc-----------------------------------CCCCCCCCCCce
Q 010065 291 PLESAQDH---------------------KRVG-----------------------------------DGDTGPNTGGMG 314 (519)
Q Consensus 291 ~~~~~~~~---------------------~~~~-----------------------------------~~~~~~~~g~~~ 314 (519)
.......- .... ......++|+..
T Consensus 393 aa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~ 472 (547)
T TIGR03103 393 AAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTI 472 (547)
T ss_pred EEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCee
Confidence 21110000 0000 012233455543
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEc-CCCceEEEEEeCCCCCCchHHHHHHhCCCHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEK-KSGLPKLIEYNVRFGDPECQVLMVRLESDLAE 393 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~-~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~ 393 (519)
.-+ ++++...+.+.| .++.+++|+++.| ||++.++ ++....|||+|.|||...+ -.-+..+
T Consensus 473 ~dv-----td~~~~~~~~~A----~~aa~~~gl~~~G---vD~i~~~~~~p~~~iiEvN~~Pgl~~h------~~~~~~~ 534 (547)
T TIGR03103 473 HDV-----TEQLHPDLREAA----ERAARALDIPVVG---IDFLVPDVTGPDYVIIEANERPGLANH------EPQPTAE 534 (547)
T ss_pred Eec-----ccccCHHHHHHH----HHHHHHhCCCeEE---EEEEeccCCCCCeEEEEecCCcccccc------CCCchHH
Confidence 332 233333444444 3466889988666 9999875 3313599999999988666 2346666
Q ss_pred HHHHHH
Q 010065 394 VLLAAC 399 (519)
Q Consensus 394 ~~i~~~ 399 (519)
.+++++
T Consensus 535 ~~~d~l 540 (547)
T TIGR03103 535 RFIDLL 540 (547)
T ss_pred HHHHHh
Confidence 666655
|
Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. |
| >COG3919 Predicted ATP-grasp enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=162.87 Aligned_cols=292 Identities=17% Similarity=0.104 Sum_probs=187.7
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC--cCCCC-CccccCCC--CCCHHHHHHHHHHcCCcEEEE--C--
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI--SNSGD-ATCIPDLD--VLDGDAVISFCRKWSVGLVVV--G-- 154 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~--~~~~~-~~~v~~~d--~~d~~~l~~~~~~~~id~Vi~--g-- 154 (519)
-|+|+|+.....++++.+..+ .+.+..+..+.+.. +.... .... ..+ ..-...|.+++.++...+.+. +
T Consensus 5 gviilGgahgtlalARSfg~~-~vpv~~ls~d~plPt~Sr~vr~t~~w-~gphd~gaiafLrd~Aekhglkg~LLva~GD 82 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEE-FVPVLALSADGPLPTYSRIVRVTTHW-NGPHDEGAIAFLRDFAEKHGLKGYLLVACGD 82 (415)
T ss_pred ceEEEcccchhHHHHHhhccc-cceEEEEecCCCCcchhhhheeeecc-CCCCcccHHHHHHHHHhhcCcCceEEEecCC
Confidence 478898875555677777655 45555554332221 11110 0001 122 222778888888876554433 2
Q ss_pred CChhhHHHHHHHHH-HCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC
Q 010065 155 PEAPLVSGLANKLV-KAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA 233 (519)
Q Consensus 155 ~E~~~~~~~a~~le-~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~ 233 (519)
+|.-++....+.|. ...+| -++........+|-.+++.+.++|+|.|++..+++..+.. .+++-||+|+||..|+
T Consensus 83 gev~lvSq~reeLSa~f~v~--lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~S~~d~~--~~el~FPvILKP~mgg 158 (415)
T COG3919 83 GEVLLVSQYREELSAFFEVP--LPDWALLRWLCEKPLLYNRAEELGLPYPKTYLVNSEIDTL--VDELTFPVILKPGMGG 158 (415)
T ss_pred ceeeehHhhHHHHHHHhcCC--CCcHHHHHHHhhCcHHHHHHHHhCCCCcceEEecchhhhh--hhheeeeEEecCCCCC
Confidence 45544444444443 45777 4799999999999999999999999999999999765543 4678899999998877
Q ss_pred CC-----CcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-c--EEEEEEEEeCCeeEEeccccccccccCCC
Q 010065 234 AG-----KGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-E--EASFFALVDGENAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 234 gs-----~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~--E~sv~~l~dg~~~~~~~~~~~~~~~~~~~ 305 (519)
|- ..+..+.+.+|+..++..+..+ ...+.++|||||+| . .++..++.|.+.-+.....+. -+.+..+
T Consensus 159 ~~~~~araKa~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr-~rqyPvd 233 (415)
T COG3919 159 SVHFEARAKAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARR-LRQYPVD 233 (415)
T ss_pred cceeehhhheeeccCHHHHHHHHHHHHHh----cCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcch-hhcCCcc
Confidence 42 2345678899999888877643 24588999999997 3 477777775542222222211 1222222
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH
Q 010065 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385 (519)
Q Consensus 306 ~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~ 385 (519)
.+| +.+....|- +..+++. + .+.+...+ ++|++.+||++|+.+|..+++||||||+.... +..
T Consensus 234 fgy--tst~vevvD---n~Q~i~a----a----r~~L~si~--htGlvevefK~D~RDGs~KlldvNpRpw~wfg--l~t 296 (415)
T COG3919 234 FGY--TSTVVEVVD---NQQVIQA----A----RDFLESIE--HTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFG--LVT 296 (415)
T ss_pred ccc--ccEEEEecC---cHHHHHH----H----HHHHHhhc--ccceEEEEEEecCCCCceeEEeecCCCcceee--EEe
Confidence 222 122222221 2222222 2 34555555 56999999999987679999999999976432 334
Q ss_pred HhCCCHHHHHHHHHhCCC
Q 010065 386 RLESDLAEVLLAACRGEL 403 (519)
Q Consensus 386 ~~G~d~~~~~i~~~~g~~ 403 (519)
..|+|+-.++++...++.
T Consensus 297 aaG~nLg~~Lwa~~~~~~ 314 (415)
T COG3919 297 AAGYNLGRYLWADRINNE 314 (415)
T ss_pred cccccccceEEeeecCCc
Confidence 469999999988877763
|
|
| >COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=162.79 Aligned_cols=210 Identities=22% Similarity=0.313 Sum_probs=155.9
Q ss_pred CCcEEE--ECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC
Q 010065 147 SVGLVV--VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP 224 (519)
Q Consensus 147 ~id~Vi--~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P 224 (519)
++|+.+ ..-+++++..+.+..|+. +-.+|+++++++.|.||+++.+.|+.+ +++|++..+. ..+-.
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~----------~~~~k 140 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREWA----------EEPKK 140 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccccc----------cCCce
Confidence 556444 345566777888888887 677899999999999999999999999 9999976432 23456
Q ss_pred EEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCC
Q 010065 225 IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 225 ~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~ 304 (519)
+|+||.+|+|+.|+.+..+..+ -.|+||||+|..+||. +.+|+.+.++..+++...+...
T Consensus 141 ~ViKp~dgCgge~i~~~~~~pd-------------------~~i~qEfIeG~~lSVS-L~~GEkv~pLsvNrQfi~~~~~ 200 (307)
T COG1821 141 YVIKPADGCGGEGILFGRDFPD-------------------IEIAQEFIEGEHLSVS-LSVGEKVLPLSVNRQFIIFAGS 200 (307)
T ss_pred EEecccccCCcceeeccCCCcc-------------------hhhHHHhcCCcceEEE-EecCCccccceechhhhhhccc
Confidence 9999999999999998776443 2678999999999999 6688888888777664333332
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVL 383 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~ 383 (519)
..+|.-| +++ ++.++.+++.+.|++ +.... ||. |++.||+++. |+ ||+|||||||.-+.. .+
T Consensus 201 ~~~y~gg------~~p-i~he~k~~~~~~Ai~----aVeci~Gl~--GYVGVDlVls-D~--pYvIEINpR~TTp~v-g~ 263 (307)
T COG1821 201 ELVYNGG------RTP-IDHELKREAFEEAIR----AVECIPGLN--GYVGVDLVLS-DE--PYVIEINPRPTTPTV-GL 263 (307)
T ss_pred eeeeccC------cCC-CCcHHHHHHHHHHHH----HHHhhcccc--ceeeEEEEec-CC--cEEEEecCCCCccee-ee
Confidence 3333222 344 666888888887764 44444 576 9999999998 55 999999999955433 33
Q ss_pred HHHhCCCHHHHHHHHHhCCCCC
Q 010065 384 MVRLESDLAEVLLAACRGELTG 405 (519)
Q Consensus 384 ~~~~G~d~~~~~i~~~~g~~~~ 405 (519)
...++-++.++++.-..|++++
T Consensus 264 sr~~~~sv~~LLl~~~~g~~~~ 285 (307)
T COG1821 264 SRVTPESVAELLLEGPTGKVLR 285 (307)
T ss_pred eccccHHHHHHHhcCccccccc
Confidence 3445778888888877777543
|
|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.7e-18 Score=185.61 Aligned_cols=143 Identities=22% Similarity=0.309 Sum_probs=117.7
Q ss_pred HHHHHHHHHHcCCcEEEECCChhh---HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHH
Q 010065 136 GDAVISFCRKWSVGLVVVGPEAPL---VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~g~E~~~---~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~ 212 (519)
...|++.+++.++++...+..+.+ ....++..+..+.. +++..++.++.||..++++|+++|||+|++..+.+.+
T Consensus 162 t~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~~i~~~~~~--~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~ 239 (727)
T PRK14016 162 TAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQRRIQAAETD--QTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAE 239 (727)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHHHHHHhcCC--CCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHH
Confidence 468899999999988554321110 01123345555555 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCcEEE-eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC
Q 010065 213 AAKQYIQEEGAPIVVKADGLAAGKGVIV-AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE 287 (519)
Q Consensus 213 ~~~~~~~~~g~P~VvKP~~g~gs~GV~~-v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~ 287 (519)
++.++++++|||+|+||..|++|+||++ +++.+|+.++++.+.. .+..+|||+||+|+||.+.++ +|+
T Consensus 240 ~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~------~~~~viVEe~I~G~d~Rv~Vv-gg~ 308 (727)
T PRK14016 240 DAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASK------ESSDVIVERYIPGKDHRLLVV-GGK 308 (727)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHH------hCCeEEEEEecCCceEEEEEE-CCE
Confidence 9999999999999999999999999998 9999999999988764 347899999999999998655 554
|
|
| >TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-17 Score=176.70 Aligned_cols=199 Identities=21% Similarity=0.248 Sum_probs=137.8
Q ss_pred cHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCEEEEeCCCCCCCcEEEeCC---HHHHHHHHHH
Q 010065 178 SSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVKADGLAAGKGVIVAMT---LEEAYEAVDS 253 (519)
Q Consensus 178 ~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~-g~P~VvKP~~g~gs~GV~~v~~---~~el~~a~~~ 253 (519)
+..+..+++||..+|++|+++|||+|++..+.+.+++.+....+ ++|+||||.++++|+||.++.+ .+++.++++.
T Consensus 466 S~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~ 545 (737)
T TIGR01435 466 NYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNI 545 (737)
T ss_pred cHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHH
Confidence 45567899999999999999999999999999887777666666 6999999999999999999866 7899999988
Q ss_pred HHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccc-------------------cccc--cc-----------
Q 010065 254 MLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESA-------------------QDHK--RV----------- 301 (519)
Q Consensus 254 ~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~-------------------~~~~--~~----------- 301 (519)
++. .+..+|||+||+|+||+|.++ +++ ++++... .... +-
T Consensus 546 A~~------~~~~VLVEefI~G~EyRv~VI-g~k-vvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~ 617 (737)
T TIGR01435 546 AFS------EDSSVIIEEFLPGTEYRFFVL-NDK-VEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKIT 617 (737)
T ss_pred HHh------cCCeEEEEecccCCEEEEEEE-CCe-EEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCccccc
Confidence 764 457899999999999999877 444 2222110 0000 00
Q ss_pred ------------cCC--------------CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEE
Q 010065 302 ------------GDG--------------DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYA 355 (519)
Q Consensus 302 ------------~~~--------------~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~v 355 (519)
+.. ....++|+... + +++++.....+.| .++.+++|+++.| |
T Consensus 618 ~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~i----D-vTd~ihp~~~~lA----~~aa~algl~i~G---V 685 (737)
T TIGR01435 618 GPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSI----D-MTDEMDDSYKQIA----IRIATAVGAAICG---V 685 (737)
T ss_pred chHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceE----e-cccccCHHHHHHH----HHHHHhcCCCEEE---E
Confidence 000 00111222211 1 3344444555555 4566899988655 9
Q ss_pred EEEEEcCC-------CceEEEEEeCCCCCCchHHHHHHh--CCCHHHHHHHH
Q 010065 356 GLMIEKKS-------GLPKLIEYNVRFGDPECQVLMVRL--ESDLAEVLLAA 398 (519)
Q Consensus 356 df~~~~~g-------~~~~viEiN~R~G~~~~~~~~~~~--G~d~~~~~i~~ 398 (519)
|++..+-. ....+||+|.+||...+ .+|.. .-|+...++++
T Consensus 686 Dii~~di~~p~~~~~~~~~iiEvN~~P~l~mH--~~P~~G~~r~v~~~ild~ 735 (737)
T TIGR01435 686 DLIIPDETIPDTDKHAIWGVIEANFNPAMHMH--CFPYAGEKRRLTDKVIKF 735 (737)
T ss_pred EEEecCCCCCccccccceEEEEEcCCcchhhh--cCCCCCCCcchHHHHHHh
Confidence 99986321 12568999999988665 55655 44666666654
|
gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein. |
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=179.36 Aligned_cols=202 Identities=19% Similarity=0.285 Sum_probs=143.8
Q ss_pred CcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEE-eCCHHHHHHHHHHHH
Q 010065 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIV-AMTLEEAYEAVDSML 255 (519)
Q Consensus 177 ~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~-v~~~~el~~a~~~~~ 255 (519)
.+..+..+++||..++++|+++|||+|++..+.+.+++.++++++|||+|+||..+++|.||.+ +++.+|+.++++.+.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~ 282 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAV 282 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999998 999999999999886
Q ss_pred hhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccc-c------------------c-c---------------
Q 010065 256 LKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQD-H------------------K-R--------------- 300 (519)
Q Consensus 256 ~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~-~------------------~-~--------------- 300 (519)
. .+..+|||+||+|+||++.++ +|+ ++....... + . +
T Consensus 283 ~------~~~~vlVEefI~G~e~rvlVv-~~~-vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d 354 (864)
T TIGR02068 283 E------ESSGVIVERFITGRDHRLLVV-GGK-VVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLD 354 (864)
T ss_pred h------hCCcEEEEEeccCCEEEEEEE-CCE-EEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCC
Confidence 4 346899999999999998665 544 332211000 0 0 0
Q ss_pred ------------------------ccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEE
Q 010065 301 ------------------------VGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAG 356 (519)
Q Consensus 301 ------------------------~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vd 356 (519)
.+......++|+...-+... +.++ ..+.| .++.+++|+++.| ||
T Consensus 355 ~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~-i~~~----~~~~a----~~aa~~~gl~i~g---vD 422 (864)
T TIGR02068 355 STARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDE-IHPE----NAATA----VRAAKIIGLDIAG---VD 422 (864)
T ss_pred HHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccc-cCHH----HHHHH----HHHHHHhCCCeEE---EE
Confidence 00111222334333222222 4444 34433 2455788988666 99
Q ss_pred EEEEcCC-----CceEEEEEeCCCCCCchHHHHHHh--CCCHHHHHHHHHh
Q 010065 357 LMIEKKS-----GLPKLIEYNVRFGDPECQVLMVRL--ESDLAEVLLAACR 400 (519)
Q Consensus 357 f~~~~~g-----~~~~viEiN~R~G~~~~~~~~~~~--G~d~~~~~i~~~~ 400 (519)
++..+-. ....++|+|..||...+ ++|.. +.+....+++.+.
T Consensus 423 ~i~~di~~~~~~~~~~iiEvN~~p~~~~h--~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 423 IVTEDISRPLRDTDGAIVEVNAAPGLRMH--LAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred EEecCCCCCccccCcEEEEEcCCcchhhc--ccccCCCCeeHHHHHHHHhc
Confidence 9875311 12579999999988655 44443 6677777777665
|
Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. |
| >PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=175.56 Aligned_cols=241 Identities=19% Similarity=0.223 Sum_probs=156.4
Q ss_pred HHHHHHHHHHcCCcEEEECCChhhHHHHH----HHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCH
Q 010065 136 GDAVISFCRKWSVGLVVVGPEAPLVSGLA----NKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDP 211 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~g~E~~~~~~~a----~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~ 211 (519)
...+++.+.+.++.+.+...+..+++-.. +.+...+.+- ..+..+..++.||..++++|+++|||+|++..+.+.
T Consensus 434 T~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~~~t~-~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~ 512 (752)
T PRK02471 434 TQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNGNMTS-KDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL 512 (752)
T ss_pred HHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEeccccC-CCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH
Confidence 45778888888888777754332221100 0001111221 134446677789999999999999999999999998
Q ss_pred HHHHHHHHHh-CCCEEEEeCCCCCCCcEEEe---CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC
Q 010065 212 NAAKQYIQEE-GAPIVVKADGLAAGKGVIVA---MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE 287 (519)
Q Consensus 212 ~~~~~~~~~~-g~P~VvKP~~g~gs~GV~~v---~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~ 287 (519)
+++.+..+.+ |||+||||..+++|+||.++ ++.+++.++++.++. .+..+||||||+|+||+|.++ +|+
T Consensus 513 e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~------~~~~vlVEEfI~G~E~Rv~Vi-ggk 585 (752)
T PRK02471 513 EEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFR------EDSSVLVEEFIVGTEYRFFVL-DGK 585 (752)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHh------cCCcEEEEecccCCEEEEEEE-CCE
Confidence 8887766664 89999999999999999985 568999999988764 457899999999999999777 554
Q ss_pred eeEEeccc-------------------cccc--cc------------------------cCCC--------------CCC
Q 010065 288 NAIPLESA-------------------QDHK--RV------------------------GDGD--------------TGP 308 (519)
Q Consensus 288 ~~~~~~~~-------------------~~~~--~~------------------------~~~~--------------~~~ 308 (519)
++..... .... +- +..+ ...
T Consensus 586 -vvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~Nl 664 (752)
T PRK02471 586 -VEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNI 664 (752)
T ss_pred -EEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCcc
Confidence 2221110 0000 00 0000 011
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCC-----C--ceEEEEEeCCCCCCchH
Q 010065 309 NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKS-----G--LPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 309 ~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g-----~--~~~viEiN~R~G~~~~~ 381 (519)
++|+... + +++.+.....+.| .++.+++|+++.| ||++..+-. . ...+||+|.+||...+
T Consensus 665 stGg~~~----d-vtd~ih~~~~~lA----~~aa~~igl~~~G---vDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH- 731 (752)
T PRK02471 665 STGGDSI----D-MTDDMDDSYKQIA----VKAAKALGAKICG---VDLIIPDLTQPASPEHPNYGIIELNFNPAMYMH- 731 (752)
T ss_pred CCCCeeE----e-cccccCHHHHHHH----HHHHHhcCCCEEE---EEEEeCCCcccccccCCCeEEEEecCCCchhhc-
Confidence 1222111 1 3344444555554 3566888988766 999986511 0 2688999999988665
Q ss_pred HHHHHh--CCCHHHHHHHHH
Q 010065 382 VLMVRL--ESDLAEVLLAAC 399 (519)
Q Consensus 382 ~~~~~~--G~d~~~~~i~~~ 399 (519)
++|.. ..|..+.+++++
T Consensus 732 -~~P~~G~~r~v~~~i~d~l 750 (752)
T PRK02471 732 -CFPYKGKGRRITPKILDKL 750 (752)
T ss_pred -cCccCCCCcchHHHHHHHh
Confidence 66666 446777776654
|
|
| >PRK12458 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=154.34 Aligned_cols=204 Identities=17% Similarity=0.228 Sum_probs=140.3
Q ss_pred HHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC-EEEEeCCCCCCCcEEEeCCH
Q 010065 166 KLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGLAAGKGVIVAMTL 244 (519)
Q Consensus 166 ~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P-~VvKP~~g~gs~GV~~v~~~ 244 (519)
.++..|++++ ++++++..+.||..+..+++ +++|++.+..+.+++.++++++++| +|+||..|.+|.||.++++.
T Consensus 109 ~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~ 184 (338)
T PRK12458 109 LAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHISRNKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKS 184 (338)
T ss_pred HHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecC
Confidence 3467799888 99999999999999976655 6889998888888998988888765 99999999999999999876
Q ss_pred HH--HHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE-eCCeeE------EeccccccccccCCCCCCCCCCce
Q 010065 245 EE--AYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV-DGENAI------PLESAQDHKRVGDGDTGPNTGGMG 314 (519)
Q Consensus 245 ~e--l~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~-dg~~~~------~~~~~~~~~~~~~~~~~~~~g~~~ 314 (519)
++ +...++... ....+|+|+||++ .+..+.++. +|+ ++ +.. .+. ....++....+.|+.
T Consensus 185 ~~~~~~~ile~~~-------~~~~~ivQeyI~~~~~gDiRv~vv~g~-~v~~~g~~~a~-~R~-~~~~d~RsN~~~Gg~- 253 (338)
T PRK12458 185 AQSNLNQILEFYS-------GDGYVIAQEYLPGAEEGDVRILLLNGE-PLERDGHYAAM-RRV-PAGGDVRSNVHAGGS- 253 (338)
T ss_pred ChhhHHHHHHHHh-------hCCCEEEEEcccCCCCCCEEEEEECCE-EEeeccceeEE-EEe-cCCCCeeecccCCCc-
Confidence 53 555555442 2358999999997 444444444 555 33 221 111 111233444455543
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCC-CCCCchHHHHHHhCCCHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVR-FGDPECQVLMVRLESDLAE 393 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R-~G~~~~~~~~~~~G~d~~~ 393 (519)
..+.+ ++++..+.+.+.+ .++...|+. ++.||++ + .+++|||++ ||+ . ..+...+|+|+.+
T Consensus 254 -~~~~~-l~~~~~~ia~~~~-----~~l~~~GL~---~~gVDli----~--~~l~EIN~~sp~g-~-~~~~~~~g~d~a~ 315 (338)
T PRK12458 254 -VVKHT-LTKEELELCEAIR-----PKLVRDGLF---FVGLDIV----G--DKLVEVNVFSPGG-L-TRINKLNKIDFVE 315 (338)
T ss_pred -ccCcC-CCHHHHHHHHHHH-----HHHhhcCCe---EEeEEEE----C--CEEEEEeCCCcch-H-HHHHHHhCCCHHH
Confidence 34555 7776655444432 334445665 4559997 3 479999997 544 2 2455667999999
Q ss_pred HHHHHHhCC
Q 010065 394 VLLAACRGE 402 (519)
Q Consensus 394 ~~i~~~~g~ 402 (519)
.+++.+...
T Consensus 316 ~i~~~i~~~ 324 (338)
T PRK12458 316 DIIEALERK 324 (338)
T ss_pred HHHHHHHHH
Confidence 999988655
|
|
| >PLN02941 inositol-tetrakisphosphate 1-kinase | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-15 Score=145.52 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=133.3
Q ss_pred CCcEEEE--CCChhhHHHH-HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcC-------CCCCCeeecCCHHHHH-
Q 010065 147 SVGLVVV--GPEAPLVSGL-ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYG-------IPTAKYKTFTDPNAAK- 215 (519)
Q Consensus 147 ~id~Vi~--g~E~~~~~~~-a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~G-------i~~p~~~~v~~~~~~~- 215 (519)
.+|+|+- .++.. .+.+ +..++..|++++ ++++++..+.||..|.++|.++| ||+|++.++.+.+.+.
T Consensus 66 pfDvilhK~~~~~~-~~~~~~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~ 143 (328)
T PLN02941 66 PFDVILHKLYGKEW-RQQLEEYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIP 143 (328)
T ss_pred CcCEEEEecCCHHH-HHHHHHHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHH
Confidence 5688876 23321 2223 334567799998 99999999999999999999999 9999999999876533
Q ss_pred --HHHHHhCCCEEEEeCCC---CCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC--CcEEEEEEEEeCCe
Q 010065 216 --QYIQEEGAPIVVKADGL---AAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE--GEEASFFALVDGEN 288 (519)
Q Consensus 216 --~~~~~~g~P~VvKP~~g---~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~--G~E~sv~~l~dg~~ 288 (519)
...+.++||+|+||..+ +.|+++.++.++++|.. + ...+++||||+ |+.|-|.++ |+.
T Consensus 144 ~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~----l---------~~p~~lQEfVnh~g~d~RVfVv--Gd~ 208 (328)
T PLN02941 144 DAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSK----L---------EPPLVLQEFVNHGGVLFKVYVV--GDY 208 (328)
T ss_pred HHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHh----c---------CCcEEEEEecCCCCEEEEEEEE--CCE
Confidence 33567899999999988 77899999999988775 2 24699999995 688888777 443
Q ss_pred eEEeccccccc-cccCCCCCCCCC-------------Cc-eE---Ee--cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010065 289 AIPLESAQDHK-RVGDGDTGPNTG-------------GM-GA---YS--PAPVLTKELQSVVMESIILPTVKGMSAEGCK 348 (519)
Q Consensus 289 ~~~~~~~~~~~-~~~~~~~~~~~g-------------~~-~~---~~--P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~ 348 (519)
+..+ .+... .+...+.....| .. +. .- +.+ ++. .+++.+.+. ++-+++|+.
T Consensus 209 v~~~--~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~-~p~--~~~l~~La~----~~r~alGl~ 279 (328)
T PLN02941 209 VKCV--RRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAE-LPP--RPFLEDLAR----ELRRRLGLR 279 (328)
T ss_pred EEEE--EecCCccccccccccccccccccccccccccccccccccccccccc-CCC--hHHHHHHHH----HHHHHhCCc
Confidence 3211 11111 111001111101 00 00 00 111 111 122344432 344788875
Q ss_pred eeeEEEEEEEEEcCC-CceEEEEEeCCCCCCch
Q 010065 349 FVGVLYAGLMIEKKS-GLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 349 ~~G~~~vdf~~~~~g-~~~~viEiN~R~G~~~~ 380 (519)
+++||++.+++. +.++|+|||..||....
T Consensus 280 ---l~GvDvI~~~~~~~~~~VidVN~fP~~k~~ 309 (328)
T PLN02941 280 ---LFNFDMIREHGTGDRYYVIDINYFPGYAKM 309 (328)
T ss_pred ---eEEEEEEeecCCCCceEEEEecCCCccccC
Confidence 455999998742 25999999999976443
|
|
| >PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-16 Score=126.58 Aligned_cols=99 Identities=52% Similarity=0.885 Sum_probs=83.3
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
|||||+|+|+|||+++|+|.++..++.+++.|+|+++.... ..+ .++..|.+.+.++|+++++|+|++|+|.++..+
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~aPGN~G~~~~~--~~~-~~~~~d~~~l~~~a~~~~idlvvvGPE~pL~~G 77 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVAPGNPGTAELG--KNV-PIDITDPEELADFAKENKIDLVVVGPEAPLVAG 77 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEEE--TTGGGTS--EEE--S-TT-HHHHHHHHHHTTESEEEESSHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhc--eec-CCCCCCHHHHHHHHHHcCCCEEEECChHHHHHH
Confidence 79999999999999999999998888999999999987653 334 568899999999999999999999999999999
Q ss_pred HHHHHHHCCCCeeCCcHHHHHH
Q 010065 163 LANKLVKAGIPTFGPSSEAAAL 184 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~ 184 (519)
+++.|++.|+|++||+.+++++
T Consensus 78 l~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 78 LADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp HHHHHHHTT-CEES--HHHHHH
T ss_pred HHHHHHHCCCcEECcCHHHHhc
Confidence 9999999999999999988875
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >TIGR01380 glut_syn glutathione synthetase, prokaryotic | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-14 Score=143.74 Aligned_cols=221 Identities=17% Similarity=0.177 Sum_probs=150.1
Q ss_pred CCcEEEECC-----Chh-hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH
Q 010065 147 SVGLVVVGP-----EAP-LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQE 220 (519)
Q Consensus 147 ~id~Vi~g~-----E~~-~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~ 220 (519)
++|+|++-. +.. .-..+.+.+|..|++++ +++.++..+.||..+.+++. ++|++....+.+++.+++++
T Consensus 78 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~~~~~~~~~~ 152 (312)
T TIGR01380 78 ELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLVTRDKAEIRAFLAE 152 (312)
T ss_pred cCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCHHHHHHHHHH
Confidence 589999821 111 11246777888999988 99999999999999877653 79999988899999999988
Q ss_pred hCCCEEEEeCCCCCCCcEEEeCC-HHHHHHHHHHHHhhccCCCCCCcEEEEeccC---CcEEEEEEEEeCCeeEEecccc
Q 010065 221 EGAPIVVKADGLAAGKGVIVAMT-LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE---GEEASFFALVDGENAIPLESAQ 296 (519)
Q Consensus 221 ~g~P~VvKP~~g~gs~GV~~v~~-~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~---G~E~sv~~l~dg~~~~~~~~~~ 296 (519)
.+ |+|+||..|++|.||.++++ ..++...++.... .....+++|+||+ +.++.+.++ +|+ ++.....+
T Consensus 153 ~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~-----~~~~~~~vQ~yI~~~~~~D~Rv~vv-~g~-vv~~ai~R 224 (312)
T TIGR01380 153 HG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQ-----RGREPVMAQRYLPEIKEGDKRILLI-DGE-PIGAAVAR 224 (312)
T ss_pred cC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHHh-----ccCCcEEEEeccccccCCCEEEEEE-CCe-EEEEEEEe
Confidence 88 99999999999999999875 3334333332221 1235799999997 367877655 554 33212222
Q ss_pred ccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCC-C
Q 010065 297 DHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVR-F 375 (519)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R-~ 375 (519)
.. ...++....+.|+ ...|.+ ++++..+...+. ..++.++|+.|.| ||++ + .+|+|||.. |
T Consensus 225 ~~-~~gd~r~N~~~Gg--~~~~~~-l~~e~~~ia~~~-----~~~~~~~gl~~ag---VDii----g--~~v~EvN~~~p 286 (312)
T TIGR01380 225 IP-AGGEFRGNLAVGG--RGEATE-LSERDREICADV-----APELKRRGLLFVG---IDVI----G--GYLTEVNVTSP 286 (312)
T ss_pred cC-CCCCccccccCCc--eeeccC-CCHHHHHHHHHH-----HHHHHhcCCcEEE---EEEe----C--CEEEEEecCCc
Confidence 11 1113334445554 345666 777655433332 2445677876655 9998 4 579999986 4
Q ss_pred CCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 376 GDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 376 G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
++ ...+...+|.|+.+.+++.+.
T Consensus 287 ~~--~~~~~~~~g~~ia~~i~d~l~ 309 (312)
T TIGR01380 287 TG--IREIDRQKGVNIAGMLWDAIE 309 (312)
T ss_pred ch--HHHHHhhhCCCHHHHHHHHHH
Confidence 32 234556689999999998764
|
This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. |
| >PRK05246 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-14 Score=142.70 Aligned_cols=223 Identities=16% Similarity=0.189 Sum_probs=150.8
Q ss_pred CCcEEEEC--C---Ch-hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH
Q 010065 147 SVGLVVVG--P---EA-PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQE 220 (519)
Q Consensus 147 ~id~Vi~g--~---E~-~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~ 220 (519)
.+|+|++- . +. .....+.+.++..|++++ +++.++..+.||..+.+++. ++|++....+.+++.+++++
T Consensus 79 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~~~~~~~~~~ 153 (316)
T PRK05246 79 DFDVILMRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLVTRDKAEIRAFRAE 153 (316)
T ss_pred cCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEEeCCHHHHHHHHHH
Confidence 48999983 1 11 112245667887899998 89999999999999988655 78999998899999999988
Q ss_pred hCCCEEEEeCCCCCCCcEEEeCC-HHHHHHHHHHHHhhccCCCCCCcEEEEeccCC---cEEEEEEEEeCCeeEEecccc
Q 010065 221 EGAPIVVKADGLAAGKGVIVAMT-LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG---EEASFFALVDGENAIPLESAQ 296 (519)
Q Consensus 221 ~g~P~VvKP~~g~gs~GV~~v~~-~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G---~E~sv~~l~dg~~~~~~~~~~ 296 (519)
.+ |+|+||..|++|.||.++.. ..++...++.+.. .....+|+|+||+. .++.+.++ +|+ ++.....+
T Consensus 154 ~~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv-~g~-vv~~a~~R 225 (316)
T PRK05246 154 HG-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLV-DGE-PVGYALAR 225 (316)
T ss_pred CC-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEE-CCE-EhhheeEe
Confidence 87 99999999999999999944 3444433333321 12468999999975 56776655 554 33311122
Q ss_pred ccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCC-C
Q 010065 297 DHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVR-F 375 (519)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R-~ 375 (519)
.. ...++.+..+.|+ ...|.+ ++++..+-..+ + .+.+..+|+.+ ++||++ + .||+|||.. |
T Consensus 226 ~~-~~~~~rtN~~~Gg--~~~~~~-l~~~~~~ia~~-~----~~~l~~~gl~~---~GVDli----~--~~l~EvN~~~p 287 (316)
T PRK05246 226 IP-AGGETRGNLAAGG--RGEATP-LTERDREICAA-I----GPELKERGLIF---VGIDVI----G--DYLTEINVTSP 287 (316)
T ss_pred cC-CCCCcccCccCCc--eEeccC-CCHHHHHHHHH-H----HHHHHHhCCCE---EEEEEe----C--CEEEEEeCCCc
Confidence 11 1123344455554 345666 77654433332 2 24556677765 459998 4 369999986 6
Q ss_pred CCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 376 GDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 376 G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
++ ...+...+|+|+.+.+++.+...
T Consensus 288 ~~--~~~~~~~tg~~ia~~i~~~~~~~ 312 (316)
T PRK05246 288 TG--IREIERLTGVDIAGMLWDAIEAK 312 (316)
T ss_pred hH--HHHHHHHhCCCHHHHHHHHHHHH
Confidence 44 23566667999999999987654
|
|
| >PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-15 Score=119.96 Aligned_cols=93 Identities=55% Similarity=0.923 Sum_probs=77.1
Q ss_pred cEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhhc
Q 010065 414 SAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEE 493 (519)
Q Consensus 414 ~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~ 493 (519)
+++.++++++|||..+.++.+|.+... ..+++++||++... ..+.+.++++|+..|++.|+|.+||++++++.++.
T Consensus 1 A~v~vv~as~GYP~~~~~g~~I~~~~~---~~~~~~vf~agv~~-~~~~l~t~GGRvl~v~~~g~tl~eA~~~ay~~i~~ 76 (93)
T PF02843_consen 1 ASVGVVLASKGYPGSYEKGFPITGEEE---EPEGVHVFHAGVKK-EDGQLVTNGGRVLTVVALGDTLEEAREKAYEAIEK 76 (93)
T ss_dssp EEEEEEEEETTTTSS--SS-BEBSHHH---TSTTEEEEESSEEE-ETTEEEE-SSEEEEEEEEESSHHHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCcCCCCCCCCEEecCcc---CCCCCEEEEeEEEe-eCCEEEecCCeEEEEEEEcCCHHHHHHHHHHHHhc
Confidence 367889999999999988888887333 46789999999876 58999999999999999999999999999999999
Q ss_pred cccCCeeeccccccccc
Q 010065 494 INWPGGFYRRDIGWRAL 510 (519)
Q Consensus 494 i~~~g~~~r~dig~~~~ 510 (519)
|+++|.|||+|||.+.|
T Consensus 77 I~~~g~~yR~DIG~~al 93 (93)
T PF02843_consen 77 IDFPGMFYRKDIGHRAL 93 (93)
T ss_dssp SB-TTEE--STTTHHHH
T ss_pred cCCCCCEEcCccChhhC
Confidence 99999999999998765
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=129.14 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=123.1
Q ss_pred CcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh--CC-CEEEEeCCCCCCCcEEEeCCHHH-------
Q 010065 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE--GA-PIVVKADGLAAGKGVIVAMTLEE------- 246 (519)
Q Consensus 177 ~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~--g~-P~VvKP~~g~gs~GV~~v~~~~e------- 246 (519)
++.+...++.||..+..+|+++|||+|++..+.+.+...+.+.++ ++ |+|+||..|+.|+||.++++.++
T Consensus 27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~~~ 106 (317)
T TIGR02291 27 NKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRKDGRYRKPS 106 (317)
T ss_pred CCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEecccccccccc
Confidence 566777889999999999999999999988777665332223333 45 69999999999999999966533
Q ss_pred --------HHHHHHHHHhhc-cCCCCCCcEEEEeccCC------------cEEEEEEEEeCCeeEEeccccccccccCCC
Q 010065 247 --------AYEAVDSMLLKN-AFGSAGCRVIIEEFLEG------------EEASFFALVDGENAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 247 --------l~~a~~~~~~~~-~~~~~~~~~lvEe~I~G------------~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~ 305 (519)
+...+..+.... ......+.+++|+++.. +.+.|.++ +++.+..+ .+...+.-++.
T Consensus 107 ~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv-~~~~vaa~--~R~~~~~~~~~ 183 (317)
T TIGR02291 107 GATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVF-KGYPVMAM--MRLPTRASDGK 183 (317)
T ss_pred ccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEE-CCEEEEEE--EEccCccCCcc
Confidence 444333221100 00112234666555432 34455444 33322111 11111111223
Q ss_pred CCCCCCCceEEecC---------------CC----------CCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEE
Q 010065 306 TGPNTGGMGAYSPA---------------PV----------LTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIE 360 (519)
Q Consensus 306 ~~~~~g~~~~~~P~---------------~~----------l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~ 360 (519)
...+.|+...-+.. .. +.-...+++.+.| .++.+++++ |++++|++++
T Consensus 184 tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la----~~A~~~~g~---~~~GvDii~~ 256 (317)
T TIGR02291 184 ANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELA----ASCWELTGL---GYMGVDMVLD 256 (317)
T ss_pred cccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHH----HHHHHhcCC---CeEEEEEEEe
Confidence 34455554331110 00 1113334556655 456778775 6777999998
Q ss_pred cCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 361 KKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 361 ~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
+++ .++++|+|+.||++ . ......|++-.-..++..+
T Consensus 257 ~~~-g~~VlEVN~~Pg~t-~-~~a~~~Gl~~~~~~~~~~~ 293 (317)
T TIGR02291 257 KEE-GPLVLELNARPGLA-I-QIANGAGLLPRLKHIEARL 293 (317)
T ss_pred CCC-CEEEEEeCCCCCCC-H-HHHHHCCCcHHHHHHHHhh
Confidence 654 49999999999997 2 3444457766555555443
|
Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown. |
| >COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.4e-11 Score=112.28 Aligned_cols=280 Identities=17% Similarity=0.179 Sum_probs=173.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCC-cCCCCC-ccccCCCCCCH--HHHHHHHHHcCCcEEEECCC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGI-SNSGDA-TCIPDLDVLDG--DAVISFCRKWSVGLVVVGPE 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~-~~~~~~-~~v~~~d~~d~--~~l~~~~~~~~id~Vi~g~E 156 (519)
+.+|..+|+.. ..++...++++ |.+++.+...- ... .....+ +.+..-+..|. +.+.+.+++.+ ..++|.+.
T Consensus 18 ~i~Iat~gSHS-aL~Il~GAK~E-GF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~~f~dil~~~iqe~L~~~n-~I~IP~gS 94 (361)
T COG1759 18 DITIATIGSHS-ALQILDGAKEE-GFRTIAVCQRGREKPYEKFPVADEVIIVDKFSDILNEEIQEELRELN-AIFIPHGS 94 (361)
T ss_pred ceEEEEeecch-HHHHhhhHHhc-CCcEEEEEecCccchHHhhchhheEEEechhHHHhhHHHHHHHHHcC-eEEecCCc
Confidence 45777788763 23456666655 99998886431 111 111111 22201112221 12233333333 23455333
Q ss_pred hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 010065 157 APLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGK 236 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~ 236 (519)
-....++-....++-+|++|+ -...++..|...-+.+|+++||+.|+ .+.+++++ .-|+|||+...-|++
T Consensus 95 fv~Y~G~d~ie~~~~vP~fGn-R~lLrwE~~~~~~~~lLekAgi~~P~--~~~~PeeI-------dr~VIVK~pgAkggR 164 (361)
T COG1759 95 FVAYVGYDGIENEFEVPMFGN-RELLRWEEDRKLEYKLLEKAGLRIPK--KYKSPEEI-------DRPVIVKLPGAKGGR 164 (361)
T ss_pred eEEEecchhhhhcccCccccc-HhHhhhhcchhhHHHHHHHcCCCCCc--ccCChHHc-------CCceEEecCCccCCc
Confidence 222223322355678999975 56677777999999999999999998 56677664 459999999999999
Q ss_pred cEEEeCCHHHHHHHHHHHHhhccCCC-CCCcEEEEeccCCcEEEEEEEE---eCCeeEEeccccccccccCC--------
Q 010065 237 GVIVAMTLEEAYEAVDSMLLKNAFGS-AGCRVIIEEFLEGEEASFFALV---DGENAIPLESAQDHKRVGDG-------- 304 (519)
Q Consensus 237 GV~~v~~~~el~~a~~~~~~~~~~~~-~~~~~lvEe~I~G~E~sv~~l~---dg~~~~~~~~~~~~~~~~~~-------- 304 (519)
|-+++.|.+|+.+..+++...+.... .-..+.+||||-|..+....+. .+. +-.++..+++....|+
T Consensus 165 GyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G~~f~~~yFyS~i~~~-lEl~g~D~R~Esn~Dg~~RlPa~~ 243 (361)
T COG1759 165 GYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVGAPFYFHYFYSPIKDR-LELLGIDRRYESNLDGLVRLPAKD 243 (361)
T ss_pred eEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeeccceeeeeeeccccCc-eeEeeeeheeeccchhhccCCHHH
Confidence 99999999999999999876432211 1246899999999877777664 222 2222222222111111
Q ss_pred ----CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCC
Q 010065 305 ----DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDP 378 (519)
Q Consensus 305 ----~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~ 378 (519)
+..+.....|+ .|.. +-+.+..++.+++.+.+..+-...+....|++.+|.+++++- ++++.|+.+|.+++
T Consensus 244 ql~l~~~ptyvv~Gn-~p~v-lRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl-~~vVfevS~Ri~gG 318 (361)
T COG1759 244 QLELNLEPTYVVVGN-IPVV-LRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDL-EFVVFEVSARIVGG 318 (361)
T ss_pred HhhcCCCceEEEECC-cchh-hHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCc-cEEEEEEeccccCC
Confidence 11122222232 2555 677777777777776555554555666679999999999987 89999999999443
|
|
| >PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=113.62 Aligned_cols=192 Identities=22% Similarity=0.220 Sum_probs=127.7
Q ss_pred HHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcC-CC--CCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEe--
Q 010065 167 LVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYG-IP--TAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVA-- 241 (519)
Q Consensus 167 le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~G-i~--~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v-- 241 (519)
-+..|+|++.+ ...||+.+.+.|.+.. +. .|++..+.+.+++.+++++.+ -+++||..|+.|+||.++
T Consensus 4 k~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri~~ 76 (262)
T PF14398_consen 4 KKQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRIEK 76 (262)
T ss_pred HhcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEEEE
Confidence 35679999854 3589999999999864 43 489999999999999998876 599999999999999876
Q ss_pred --------------------CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-----CcEEEEEEEE--eCCe---eEE
Q 010065 242 --------------------MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-----GEEASFFALV--DGEN---AIP 291 (519)
Q Consensus 242 --------------------~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-----G~E~sv~~l~--dg~~---~~~ 291 (519)
.+.+++...+.... ....+|||+.|+ |+.|.+-++. |+.. +..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~vtg 149 (262)
T PF14398_consen 77 KGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL-------GKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQVTG 149 (262)
T ss_pred eCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc-------CCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEEEE
Confidence 35677777777664 346999999996 6777777665 5432 222
Q ss_pred eccccccccccCCCCCCCCCCceEEecCC-CC-----CHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCc
Q 010065 292 LESAQDHKRVGDGDTGPNTGGMGAYSPAP-VL-----TKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGL 365 (519)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~g~~~~~~P~~-~l-----~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~ 365 (519)
+........ ...+..+.|+. ..|.. .+ .....+++.+.+...+...-...+.. .|-+.+|+-+|.+| +
T Consensus 150 ~~~Rva~~~--~ivTN~~~GG~--~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~-~gElGiDl~iD~~g-~ 223 (262)
T PF14398_consen 150 IVARVAKPG--SIVTNLSQGGT--ALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGH-LGELGIDLGIDKNG-K 223 (262)
T ss_pred EEEEEcCCC--CceeccCCCce--ecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCc-eeEEEEEEEEcCCC-C
Confidence 221111111 11222334433 22211 11 22345556665554333322334443 38899999999998 9
Q ss_pred eEEEEEeCCCCCC
Q 010065 366 PKLIEYNVRFGDP 378 (519)
Q Consensus 366 ~~viEiN~R~G~~ 378 (519)
+|+||+|++|+-.
T Consensus 224 iWliEvN~kP~~~ 236 (262)
T PF14398_consen 224 IWLIEVNSKPGKF 236 (262)
T ss_pred EEEEEEeCCCCcc
Confidence 9999999999753
|
|
| >PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-13 Score=115.34 Aligned_cols=100 Identities=21% Similarity=0.180 Sum_probs=56.8
Q ss_pred eeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC--CccccCCCC
Q 010065 56 FFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD--ATCIPDLDV 133 (519)
Q Consensus 56 ~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~--~~~v~~~d~ 133 (519)
|||+|||||.|+||+||+.||+++ ...|.+. +++++.+.-+..+.+.... .......+.
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v------------------~~~L~~~-~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~ 61 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNV------------------YEALDKE-KYEVIPIYIDKDGRWYLGEGPEEYLDNDDD 61 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHH------------------HHHSHTT-TEEEEEEEETTTSCEEEEHHHCSHHHTTTC
T ss_pred CeEEEEeccCchhHHHHHHHHHHH------------------HHHHhhh-cceEEEEeecCCCCEEEcccchhhcccCch
Confidence 899999999999999999999874 4444333 4444443322222111000 000000000
Q ss_pred CCH-----H-----HHHHHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCC
Q 010065 134 LDG-----D-----AVISFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGP 177 (519)
Q Consensus 134 ~d~-----~-----~l~~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~ 177 (519)
.+. . ..........+|+||| .+||+.+|++ |+.+|+||+|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~DvvFp~lHG~~GEDG~iQgl---le~~~iPYvG~ 117 (117)
T PF01820_consen 62 EEFSFKPLPEISASLIEKNEQKLEVDVVFPVLHGPNGEDGTIQGL---LELLGIPYVGC 117 (117)
T ss_dssp CCHEESSSCCEEEEETTESTTCTTCSEEEEECCSTTTSSSHHHHH---HHHTT-EBSSS
T ss_pred hhccccccccccccccccccccccCCEEEEeccCCCCcccHHHHH---HHHcCCCCcCC
Confidence 000 0 0000000457999999 3899999888 99999999985
|
3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B .... |
| >TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=112.08 Aligned_cols=101 Identities=31% Similarity=0.403 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC-CCEEEEeC----CCCCCCcEEEeCCHHHHHHHHHHHHhhcc--
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG-APIVVKAD----GLAAGKGVIVAMTLEEAYEAVDSMLLKNA-- 259 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g-~P~VvKP~----~g~gs~GV~~v~~~~el~~a~~~~~~~~~-- 259 (519)
+.+..|++|+++|||+|++..+++.+++.++++++| ||+|+||. ..+++-||.++.|.+|+.+++++++....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~ 83 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVT 83 (386)
T ss_pred cHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceee
Confidence 467889999999999999999999999999999999 99999997 22333499999999999999988874211
Q ss_pred --C---CCCCCcEEEEeccC-CcEEEEEEEEeCC
Q 010065 260 --F---GSAGCRVIIEEFLE-GEEASFFALVDGE 287 (519)
Q Consensus 260 --~---~~~~~~~lvEe~I~-G~E~sv~~l~dg~ 287 (519)
+ +..-..++||+|++ |+|+.+.++.|..
T Consensus 84 ~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~ 117 (386)
T TIGR01016 84 NQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRS 117 (386)
T ss_pred cccCCCCCEeeEEEEEECccCCceEEEEEEEcCC
Confidence 0 01114699999999 6999999998753
|
This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G |
| >PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.7e-09 Score=95.06 Aligned_cols=146 Identities=21% Similarity=0.304 Sum_probs=84.8
Q ss_pred CCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCH-HHHHHHHHHHHhhccCCCCCCcEEEEeccCC-c--E
Q 010065 202 TAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTL-EEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-E--E 277 (519)
Q Consensus 202 ~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~-~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~--E 277 (519)
+|++.+..+.+++.++.++.+. +|+||..|.||.||.++... ..+...++.+.. .....+|+|+|++. . |
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~-----~~~~~~mvQ~flp~i~~GD 85 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTK-----NGERPVMVQPFLPEIKEGD 85 (173)
T ss_dssp S--EEEES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTT-----TTTS-EEEEE--GGGGG-E
T ss_pred CcCEEEECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHh-----cCCccEEEEeccccccCCC
Confidence 4888888899999999999988 99999999999999998774 445555555533 13467999999996 2 6
Q ss_pred EEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEE
Q 010065 278 ASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGL 357 (519)
Q Consensus 278 ~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf 357 (519)
.++-++ ||+.+.+ ..+.....|+......|+..... . ++++..+..++. ...|...|+.|.| +|+
T Consensus 86 kRii~~-nG~~~~a---v~R~P~~gd~R~N~~~Gg~~~~~--~-lt~~e~~i~~~i-----~~~L~~~Gl~f~G---iDv 150 (173)
T PF02955_consen 86 KRIILF-NGEPSHA---VRRIPAKGDFRSNLAAGGSAEPA--E-LTEREREICEQI-----GPKLREDGLLFVG---IDV 150 (173)
T ss_dssp EEEEEE-TTEE-SE---EEEE--SS-S---GGGTSCEEEE--E---HHHHHHHHHH-----HHHHHHTT--EEE---EEE
T ss_pred EEEEEE-CCEEhHH---eecCCCCCCceeeeccCCceeec--C-CCHHHHHHHHHH-----HHHHhhcCcEEEE---Eec
Confidence 666544 7763222 22222233445555667665443 3 666655544442 3566778887766 998
Q ss_pred EEEcCCCceEEEEEeCC
Q 010065 358 MIEKKSGLPKLIEYNVR 374 (519)
Q Consensus 358 ~~~~~g~~~~viEiN~R 374 (519)
+ | -|+.|||.-
T Consensus 151 i----g--~~l~EiNvt 161 (173)
T PF02955_consen 151 I----G--DKLTEINVT 161 (173)
T ss_dssp E----T--TEEEEEE-S
T ss_pred c----c--cceEEEecc
Confidence 7 3 389999986
|
3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A. |
| >PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-08 Score=98.40 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=67.4
Q ss_pred CcHHHHHHhcCHHHHHHHHHHcCCCCCCeee-----------cCCHHHHHHHHHHh-CCCEEEEeCCCCCCCcEEEeCCH
Q 010065 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKT-----------FTDPNAAKQYIQEE-GAPIVVKADGLAAGKGVIVAMTL 244 (519)
Q Consensus 177 ~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~-----------v~~~~~~~~~~~~~-g~P~VvKP~~g~gs~GV~~v~~~ 244 (519)
++.+...++.||..+++++.++|||+|+... ..+.+++.+++... ..++|+||+.|++|.||.+++..
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 6677888999999999999999999999321 13456777777664 47999999999999999998655
Q ss_pred H------HHHHHHHHHHhhccCCCCCCcEEEEeccC
Q 010065 245 E------EAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274 (519)
Q Consensus 245 ~------el~~a~~~~~~~~~~~~~~~~~lvEe~I~ 274 (519)
+ +.......+.. .....+||||+|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~-----~~~~~~liqe~i~ 126 (285)
T PF14397_consen 96 DGSEINRDISALYAGLES-----LGGKDYLIQERIE 126 (285)
T ss_pred cCcccccchhHHHHHHHh-----cCCccEEEEeccc
Confidence 4 11111121111 0112899999996
|
|
| >PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-08 Score=97.24 Aligned_cols=208 Identities=13% Similarity=0.138 Sum_probs=117.0
Q ss_pred CCcEEEE-CCChhhHHHHHHHHHHC-CCCeeCCcHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeecC-CHHHHHH
Q 010065 147 SVGLVVV-GPEAPLVSGLANKLVKA-GIPTFGPSSEAAALEGSKNFMKNLCDKY-------GIPTAKYKTFT-DPNAAKQ 216 (519)
Q Consensus 147 ~id~Vi~-g~E~~~~~~~a~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gi~~p~~~~v~-~~~~~~~ 216 (519)
.+|+|+- -.+....+.+.+..+++ +++++ -+++++....|+..|.+++.+. .+.+|++..+. +.+++.+
T Consensus 52 pfDvIlHKltd~~~~~~l~~y~~~hP~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~ 130 (307)
T PF05770_consen 52 PFDVILHKLTDEDWVQQLEEYIKKHPEVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPE 130 (307)
T ss_dssp -SCEEEE--CHCHHHHHHHHHHHH-TTSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHH
Confidence 4687776 33344455666666654 67777 7899999999999999988875 67889999987 3333444
Q ss_pred HH--HHhCCCEEEEeCC--CC-CCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC--CcEEEEEEEEeCCee
Q 010065 217 YI--QEEGAPIVVKADG--LA-AGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE--GEEASFFALVDGENA 289 (519)
Q Consensus 217 ~~--~~~g~P~VvKP~~--g~-gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~--G~E~sv~~l~dg~~~ 289 (519)
.. +.+.||+|+||.. |+ .|..+.++.+++.|.+. ..++++||||. |.-|-|.++ |+.+
T Consensus 131 ~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVv--Gd~v 195 (307)
T PF05770_consen 131 LLKEAGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVV--GDKV 195 (307)
T ss_dssp HHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEE--TTEE
T ss_pred HHHHCCCcccEEeeehhhcCCccceEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEe--cCEE
Confidence 43 3466999999964 43 56789999999988641 36899999998 578888777 4433
Q ss_pred EEecc-----c---c--ccccccCCC--CCCCCCCce-EEe--c--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeE
Q 010065 290 IPLES-----A---Q--DHKRVGDGD--TGPNTGGMG-AYS--P--APVLTKELQSVVMESIILPTVKGMSAEGCKFVGV 352 (519)
Q Consensus 290 ~~~~~-----~---~--~~~~~~~~~--~~~~~g~~~-~~~--P--~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~ 352 (519)
..... . . ....++++. .+....... ..- + ....+.+..+++.+. .-+++|+. +
T Consensus 196 ~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~-------LR~~lgL~---L 265 (307)
T PF05770_consen 196 FVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKE-------LRRALGLT---L 265 (307)
T ss_dssp EEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHH-------HHHHHT-S---E
T ss_pred EEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHH-------HHHHhCcc---e
Confidence 22110 0 0 000111111 011110000 000 1 111123333332222 22678876 4
Q ss_pred EEEEEEEEcCC-CceEEEEEeCCCCCCch
Q 010065 353 LYAGLMIEKKS-GLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 353 ~~vdf~~~~~g-~~~~viEiN~R~G~~~~ 380 (519)
+++|++++.++ +++++|.||.-||....
T Consensus 266 FgfDvI~~~~t~~~~~VIDINyFPgY~~v 294 (307)
T PF05770_consen 266 FGFDVIRENGTGGRYYVIDINYFPGYKKV 294 (307)
T ss_dssp EEEEEEEGCCT-SSEEEEEEEES--TTTS
T ss_pred eeeEEEEEcCCCCcEEEEEeccCCCccCC
Confidence 55999998766 68999999999987544
|
Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X. |
| >PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.6e-09 Score=106.49 Aligned_cols=101 Identities=31% Similarity=0.329 Sum_probs=83.9
Q ss_pred cCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCEEEEeCCCCCCC----cEEEeCCHHHHHHHHHHHHhhcc-
Q 010065 186 GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVKADGLAAGK----GVIVAMTLEEAYEAVDSMLLKNA- 259 (519)
Q Consensus 186 ~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~-g~P~VvKP~~g~gs~----GV~~v~~~~el~~a~~~~~~~~~- 259 (519)
.+++.+|++|+++|||+|++..+++.+++.++++++ +||+|+||....+++ ||.+..+.+|+.+++++++....
T Consensus 3 l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~ 82 (388)
T PRK00696 3 LHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLV 82 (388)
T ss_pred CCHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhcccee
Confidence 367889999999999999999999999999999999 999999997433333 99999999999999998874311
Q ss_pred ------CCCCCCcEEEEeccC-CcEEEEEEEEeC
Q 010065 260 ------FGSAGCRVIIEEFLE-GEEASFFALVDG 286 (519)
Q Consensus 260 ------~~~~~~~~lvEe~I~-G~E~sv~~l~dg 286 (519)
.+..-..++||++++ |.|+.+.+..|.
T Consensus 83 ~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~ 116 (388)
T PRK00696 83 THQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDR 116 (388)
T ss_pred eeccCCCCCEEeEEEEEeccCCCceEEEEEEEcC
Confidence 111123599999999 699999999875
|
|
| >PF14305 ATPgrasp_TupA: TupA-like ATPgrasp | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-06 Score=82.74 Aligned_cols=184 Identities=15% Similarity=0.163 Sum_probs=110.7
Q ss_pred HHHhcCHHHHHHHHHHcC---CCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCC---HHHHHHHHHHHH
Q 010065 182 AALEGSKNFMKNLCDKYG---IPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMT---LEEAYEAVDSML 255 (519)
Q Consensus 182 ~~~~~dK~~~k~~l~~~G---i~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~---~~el~~a~~~~~ 255 (519)
...+.||...|+.+++.+ .-+|-..+.++.+++. .+.+.-++|+||.+|+|+..|....+ .+++...+...+
T Consensus 15 ~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~wl 92 (239)
T PF14305_consen 15 FTKLADKYAVREYVEEKIGEEYLPPLLGVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNRWL 92 (239)
T ss_pred ceecchHHHHHHHHHHhCCCceECceeecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHHHh
Confidence 456899999999999987 3445555566766654 25677889999999999888877654 344444444333
Q ss_pred hhc--------cCCCCCCcEEEEeccCC------cEEEEEEEEeCCeeE-Eecccc---ccccccCCCCCCCCCCceEEe
Q 010065 256 LKN--------AFGSAGCRVIIEEFLEG------EEASFFALVDGENAI-PLESAQ---DHKRVGDGDTGPNTGGMGAYS 317 (519)
Q Consensus 256 ~~~--------~~~~~~~~~lvEe~I~G------~E~sv~~l~dg~~~~-~~~~~~---~~~~~~~~~~~~~~g~~~~~~ 317 (519)
+.. .|..-.+.+|||++|+- .+|-+.++ +|+..+ .+...+ ....+|+.+.....-....-.
T Consensus 93 ~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF-~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~~~~~ 171 (239)
T PF14305_consen 93 KKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCF-NGKPKFIQVDSDRFGNHKRNFYDRDWNRLPFRSDYPP 171 (239)
T ss_pred hhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEE-CCEEEEEEEEeCCCCCeEEEEECcccCCCccccCCCC
Confidence 221 12233578999999973 36777666 675322 222221 111344433322111100001
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCc
Q 010065 318 PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPE 379 (519)
Q Consensus 318 P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~ 379 (519)
....--++..++|.+.|.+ .+.+ + .++||||...+++ +||-|+...||++.
T Consensus 172 ~~~~~kP~~l~emi~iA~~------Ls~~--f-~fvRVDlY~~~~~--iyFGElTf~p~~G~ 222 (239)
T PF14305_consen 172 DEDIPKPKNLEEMIEIAEK------LSKG--F-PFVRVDLYNVDGK--IYFGELTFTPGAGF 222 (239)
T ss_pred CCCCCCChhHHHHHHHHHH------HccC--C-CEEEEEEEEeCCc--EEEEeeecCCCCcC
Confidence 1111234455666666632 3344 4 5789999988776 99999999997753
|
|
| >PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-06 Score=81.08 Aligned_cols=102 Identities=25% Similarity=0.244 Sum_probs=68.8
Q ss_pred cCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC-----CCCcEEE-eCCHHHHHHHHHHHHhhcc
Q 010065 186 GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA-----AGKGVIV-AMTLEEAYEAVDSMLLKNA 259 (519)
Q Consensus 186 ~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~-----gs~GV~~-v~~~~el~~a~~~~~~~~~ 259 (519)
.+-...+++|+.+||++|++..+++.+++.++++++|||+++|-.... -.-||.+ ++|.+++.++++++...-.
T Consensus 10 L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~ 89 (222)
T PF13549_consen 10 LTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVA 89 (222)
T ss_dssp E-HHHHHHHHHTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999986432 1237888 8999999999998874311
Q ss_pred ---CCCCCCcEEEEeccC--CcEEEEEEEEeCC
Q 010065 260 ---FGSAGCRVIIEEFLE--GEEASFFALVDGE 287 (519)
Q Consensus 260 ---~~~~~~~~lvEe~I~--G~E~sv~~l~dg~ 287 (519)
-......++||+.++ |.|+.+.+..|..
T Consensus 90 ~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~ 122 (222)
T PF13549_consen 90 AHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQ 122 (222)
T ss_dssp HH-TT----EEEEEE------EEEEEEEEEETT
T ss_pred HhCCCCccceEEEEEcccCCcEEEEEEEEECCC
Confidence 111236899999999 7999999998853
|
|
| >COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-06 Score=84.66 Aligned_cols=100 Identities=34% Similarity=0.423 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC-CCEEEEeCCCCCC----CcEEEeCCHHHHHHHHHHHHh----hc
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG-APIVVKADGLAAG----KGVIVAMTLEEAYEAVDSMLL----KN 258 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g-~P~VvKP~~g~gs----~GV~~v~~~~el~~a~~~~~~----~~ 258 (519)
-+..|++|+++|||+|+..++.+++++.++++++| .|+|||+---.|+ -||+++.|.+|+.++.++++. ..
T Consensus 5 EYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~ 84 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTD 84 (387)
T ss_pred HHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccC
Confidence 46789999999999999999999999999999998 8999999533333 389999999999999999986 33
Q ss_pred cCCCCCCcEEEEeccC-Cc-EEEEEEEEeCC
Q 010065 259 AFGSAGCRVIIEEFLE-GE-EASFFALVDGE 287 (519)
Q Consensus 259 ~~~~~~~~~lvEe~I~-G~-E~sv~~l~dg~ 287 (519)
..+..-..++||+.++ -. ||-+.++.|..
T Consensus 85 ~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~ 115 (387)
T COG0045 85 IKGEPVNKVLVEEAVDIIKKEYYLSIVLDRS 115 (387)
T ss_pred cCCceeeEEEEEecCCCccceEEEEEEEEcC
Confidence 3333457899999999 44 99999998654
|
|
| >PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=81.38 Aligned_cols=100 Identities=39% Similarity=0.503 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC-CEEEEeCCCCCCC----cEEEeCCHHHHHHHHHHHHhhccC--
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA-PIVVKADGLAAGK----GVIVAMTLEEAYEAVDSMLLKNAF-- 260 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~-P~VvKP~~g~gs~----GV~~v~~~~el~~a~~~~~~~~~~-- 260 (519)
.+..|++|+++|||+|++.++++++++.++++.++. ++||||---.|++ ||.+++|++|+.++..+++...-.
T Consensus 4 EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~ 83 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTK 83 (202)
T ss_dssp HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-T
T ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEee
Confidence 467899999999999999999999999999999986 5799996444443 799999999999999988743211
Q ss_pred -----CCCCCcEEEEeccCC-cEEEEEEEEeCC
Q 010065 261 -----GSAGCRVIIEEFLEG-EEASFFALVDGE 287 (519)
Q Consensus 261 -----~~~~~~~lvEe~I~G-~E~sv~~l~dg~ 287 (519)
+..-..++|||+++= +|+-+.+..|..
T Consensus 84 Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~ 116 (202)
T PF08442_consen 84 QTGPKGEKVNKVLVEEFVDIKREYYLSITLDRE 116 (202)
T ss_dssp TSTTTEEEE--EEEEE---CCEEEEEEEEEETT
T ss_pred ecCCCCCEeeEEEEEecCccCceEEEEEEeccC
Confidence 112357899999997 899999888754
|
They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E .... |
| >PLN02235 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=81.03 Aligned_cols=99 Identities=21% Similarity=0.181 Sum_probs=79.1
Q ss_pred HHHHHHHHHHc-----CCCCCCeeec-CCHHHHHHHHHH---hCCC-EEEEeCCCCCCC----cEEEeCCHHHHHHHHHH
Q 010065 188 KNFMKNLCDKY-----GIPTAKYKTF-TDPNAAKQYIQE---EGAP-IVVKADGLAAGK----GVIVAMTLEEAYEAVDS 253 (519)
Q Consensus 188 K~~~k~~l~~~-----Gi~~p~~~~v-~~~~~~~~~~~~---~g~P-~VvKP~~g~gs~----GV~~v~~~~el~~a~~~ 253 (519)
-+..|++|+++ |||+|+..++ ++.+++.+++++ ++.| +||||---.|++ ||.+++|.+|+.++.++
T Consensus 8 EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~ 87 (423)
T PLN02235 8 EYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKE 87 (423)
T ss_pred HHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHH
Confidence 35668888888 9999999888 999999988887 7764 699996555554 69999999999999999
Q ss_pred HHhhcc-----CCCCCCcEEEEeccCC-cEEEEEEEEeCC
Q 010065 254 MLLKNA-----FGSAGCRVIIEEFLEG-EEASFFALVDGE 287 (519)
Q Consensus 254 ~~~~~~-----~~~~~~~~lvEe~I~G-~E~sv~~l~dg~ 287 (519)
++...- -+ .-..++||++++= +||-+.++.|..
T Consensus 88 ~Lg~~l~t~g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~ 126 (423)
T PLN02235 88 RLGKEVEMGGCKG-PITTFIVEPFVPHDQEFYLSIVSDRL 126 (423)
T ss_pred HhCCceEecCCCc-cEeEEEEEecCCCcceEEEEEEEecC
Confidence 885421 11 2247899999987 999999988654
|
|
| >PRK14046 malate--CoA ligase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-05 Score=81.63 Aligned_cols=99 Identities=23% Similarity=0.188 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC-EEEEeCCC----CCCCcEEEeCCHHHHHHHHHHHHhhcc---
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGL----AAGKGVIVAMTLEEAYEAVDSMLLKNA--- 259 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P-~VvKP~~g----~gs~GV~~v~~~~el~~a~~~~~~~~~--- 259 (519)
-+..|++|+++|||+|++..+++.+++.++++++|+| +|+|..-. +-+-||.+..|.+|+.+++++++....
T Consensus 5 E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~ 84 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTH 84 (392)
T ss_pred HHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhh
Confidence 4677899999999999999999999999999999995 59997322 223489999999999999999875311
Q ss_pred ----CCCCCCcEEEEeccCC-cEEEEEEEEeC
Q 010065 260 ----FGSAGCRVIIEEFLEG-EEASFFALVDG 286 (519)
Q Consensus 260 ----~~~~~~~~lvEe~I~G-~E~sv~~l~dg 286 (519)
.+..-..++||+++++ +|+.+.+..|.
T Consensus 85 ~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~ 116 (392)
T PRK14046 85 QTGPEGKPVQRVYVETADPIERELYLGFVLDR 116 (392)
T ss_pred ccCCCCCeeeeEEEEEecCCCcEEEEEEEECC
Confidence 1112357999999995 99999999874
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-06 Score=70.22 Aligned_cols=95 Identities=25% Similarity=0.268 Sum_probs=66.9
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCC--------CCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDL--------DVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~--------d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+||||+|.|.....+++.+++. |++++.+..+....+. ...++.. +. ...+.+.++++++++++|+++|
T Consensus 3 kkvLIanrGeia~r~~ra~r~~-Gi~tv~v~s~~d~~s~~~~~ad~~-~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALREL-GIETVAVNSNPDTVSTHVDMADEA-YFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHT-TSEEEEEEEGGGTTGHHHHHSSEE-EEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHh-CCcceeccCchhcccccccccccc-eecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 6899999997777778888877 9999998754221111 0111111 11 2367999999999999999999
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHH
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAA 182 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~ 182 (519)
| .|+. .+++.+++.|+.++||+++++
T Consensus 81 Gyg~lse~~---~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 81 GYGFLSENA---EFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp TSSTTTTHH---HHHHHHHHTT-EESSS-HHHH
T ss_pred ccchhHHHH---HHHHHHHHCCCEEECcChHhC
Confidence 6 5665 567778999999999998864
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.4e-05 Score=79.92 Aligned_cols=100 Identities=25% Similarity=0.262 Sum_probs=76.4
Q ss_pred cCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh---CCCEEEEeCCCCCC-----------CcEEEeCCHHHHHHHH
Q 010065 186 GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE---GAPIVVKADGLAAG-----------KGVIVAMTLEEAYEAV 251 (519)
Q Consensus 186 ~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~---g~P~VvKP~~g~gs-----------~GV~~v~~~~el~~a~ 251 (519)
..-+..|++|+++|||+|++.++.+.+++.++++++ ++|+|+|+.--.|+ -||.++++ +|+.+++
T Consensus 30 l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~aa 108 (422)
T PLN00124 30 IHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEELA 108 (422)
T ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHHH
Confidence 457788999999999999999999999999988888 69999999733333 34777766 9999999
Q ss_pred HHHHhhcc-------CCCCCCcEEEEeccC-CcEEEEEEEEeC
Q 010065 252 DSMLLKNA-------FGSAGCRVIIEEFLE-GEEASFFALVDG 286 (519)
Q Consensus 252 ~~~~~~~~-------~~~~~~~~lvEe~I~-G~E~sv~~l~dg 286 (519)
++++.... -+..-..++|||.+. ++|+-+.+..|.
T Consensus 109 ~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 109 GKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred HHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEecc
Confidence 99875311 111223577555555 699999999875
|
|
| >PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0043 Score=56.36 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=92.1
Q ss_pred cHHHHHHhcCHHHHHH----HHHHcC---CCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHH
Q 010065 178 SSEAAALEGSKNFMKN----LCDKYG---IPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEA 250 (519)
Q Consensus 178 ~~~~~~~~~dK~~~k~----~l~~~G---i~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a 250 (519)
+..++-.+.||..... +.+++| +|-.+.....+..+.. ....||+|||--...+|.|-.+++|..++.+.
T Consensus 2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~em~---s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi 78 (203)
T PF02750_consen 2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHREML---SAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDI 78 (203)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGGGC---S-SSSSEEEEESS-STTTTEEEE-SHHHHHHH
T ss_pred cccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhhhc---cCCCCCEEEEEccccCceeEEEEccHHHHHHH
Confidence 5567778888865432 233443 4554444444544432 23469999999999999999999999998876
Q ss_pred HHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceE-EecCCCCCHHHHH
Q 010065 251 VDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGA-YSPAPVLTKELQS 328 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~P~~~l~~~~~~ 328 (519)
..-+.. .+..+.+|+||+- .++.+.-+ |.++.++. +. -.....|-++|.... ..+ +++....
T Consensus 79 ~sll~~------~~~Y~T~EPfId~kyDirvqkI--G~~ykA~~--R~---sis~nWK~N~gsa~lEqi~---~~~ryk~ 142 (203)
T PF02750_consen 79 ASLLAI------TKDYATTEPFIDAKYDIRVQKI--GNNYKAYM--RT---SISGNWKANTGSAMLEQIA---MTERYKL 142 (203)
T ss_dssp HHHHHH------HTS-EEEEE---EEEEEEEEEE--TTEEEEEE--EE---ESSSTSSTTSSSEEEEEE------HHHHH
T ss_pred HHHHHh------cCceEEeeccccceeEEEEEEE--cCeEEEEE--Ec---cccccccccccchheeecC---CChHHHH
Confidence 665543 2467899999976 56666555 55554432 11 112234455554322 222 4555444
Q ss_pred HHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCceEEEEEeCC
Q 010065 329 VVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLPKLIEYNVR 374 (519)
Q Consensus 329 ~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~~viEiN~R 374 (519)
-+.+.. ..+ |++ ++.+|.+...+| +-|++|+|--
T Consensus 143 Wvd~~s--------~lfGGlD---I~~v~ai~~kdG-ke~Iievnds 177 (203)
T PF02750_consen 143 WVDECS--------ELFGGLD---ICAVDAIHGKDG-KEYIIEVNDS 177 (203)
T ss_dssp HHHHHG--------GGGG--S---EEEEEEEEETTS--EEEEEEE-T
T ss_pred HHHHHH--------HHcCCcc---EEEEEEEEcCCC-CEEEEEecCC
Confidence 433322 455 444 577999999998 8899999964
|
The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A. |
| >PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00022 Score=71.08 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=27.6
Q ss_pred CEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC------CcEEEEEEE
Q 010065 224 PIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE------GEEASFFAL 283 (519)
Q Consensus 224 P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~------G~E~sv~~l 283 (519)
-+|+||..++.|+|+.++++.+++.+. .. .....++||+||+ |+-|.+.++
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---~~------~~~~~~vvQkYI~~PlLi~grKFDlR~y 123 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---SK------NKNQPYVVQKYIENPLLIDGRKFDLRVY 123 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---HC------CTTS-EEEEE--SSB--BTTB-EEEEEE
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---hh------hhhhhhhhhhccCCCeEEeeeeEEEEEE
Confidence 499999999999999999999887754 10 2457899999996 655544443
|
This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A. |
| >PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0061 Score=54.68 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=64.0
Q ss_pred CcEEEEeccCCcEEEEEEEEe--CCeeEEeccccccccccCC------------CCCCCCCCceEEecCCCCCHHHHHHH
Q 010065 265 CRVIIEEFLEGEEASFFALVD--GENAIPLESAQDHKRVGDG------------DTGPNTGGMGAYSPAPVLTKELQSVV 330 (519)
Q Consensus 265 ~~~lvEe~I~G~E~sv~~l~d--g~~~~~~~~~~~~~~~~~~------------~~~~~~g~~~~~~P~~~l~~~~~~~i 330 (519)
.+..+||||-|.-+.+..+.. .+.+-.++.-+++....|+ ...+.....|+. |+. +-+.+..++
T Consensus 21 ~~~~IeEyviG~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~-p~v-lRESLL~~v 98 (188)
T PF06973_consen 21 ENAIIEEYVIGVPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNI-PAV-LRESLLPKV 98 (188)
T ss_dssp CCEEEEE---SEEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEE-EEE-E-GGGHHHH
T ss_pred cccEEEEEecCceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCc-ccc-hhHhhHHHH
Confidence 679999999998888887753 1223223332222222221 111223334443 665 777788888
Q ss_pred HHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCC
Q 010065 331 MESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDP 378 (519)
Q Consensus 331 ~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~ 378 (519)
.+.+.+.+..+-+..+-...|++.+|.+++++. ++++.|+.+|.+++
T Consensus 99 fe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dl-e~vvfevS~RI~gG 145 (188)
T PF06973_consen 99 FEMGERFVEASKELVPPGMIGPFCLQSIVTDDL-EFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHSTT---EEEEEEEEE-TTS-SEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHhcCCCccccceEEEEEcCCc-eEEEEEEeccccCC
Confidence 887776554444455555669999999999988 89999999999543
|
Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A. |
| >KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0063 Score=59.61 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=114.9
Q ss_pred HHcCCcEEEEC------CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHH----HHHHHcC---CCCCCeeecCC
Q 010065 144 RKWSVGLVVVG------PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMK----NLCDKYG---IPTAKYKTFTD 210 (519)
Q Consensus 144 ~~~~id~Vi~g------~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k----~~l~~~G---i~~p~~~~v~~ 210 (519)
+..++|+|+.+ .+...+..+...|...|||.+ ++..++-.+.||...+ ++....| +|..+.....+
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn 230 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN 230 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC
Confidence 55689999983 122223355666888999998 8888888888886544 3345555 44433333333
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCCee
Q 010065 211 PNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENA 289 (519)
Q Consensus 211 ~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~ 289 (519)
-.+. ...-.||+|||--.+.++.|-.+|+|.+|+.+.-.-..- .+...-+|.||+. .++.+.-+. .++
T Consensus 231 HK~m---~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval------~~Tyat~epFiDaKYDiriQKIG--~nY 299 (488)
T KOG3895|consen 231 HKEM---LSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVAL------TKTYATAEPFIDAKYDIRIQKIG--HNY 299 (488)
T ss_pred chhh---ccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHH------Hhhhhhccccccccceeehhhhh--hhH
Confidence 2222 223349999999999999999999999998765433221 2356678999987 566666553 222
Q ss_pred EEeccccccccccCCCCCCCCCCceEEecCCCCCHHH-HHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEE
Q 010065 290 IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKEL-QSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKL 368 (519)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~-~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~v 368 (519)
-.+. + +-..++.|-++|... |..-. .++-+.. +..+-...|-- .++.|+.....+| +=|+
T Consensus 300 Kaym--R---tsIsgnWKtNtGSam-------LEQIamseRyklw----vdtcse~fGgl--dICav~alhsKdG-rd~i 360 (488)
T KOG3895|consen 300 KAYM--R---TSISGNWKTNTGSAM-------LEQIAMSERYKLW----VDTCSEMFGGL--DICAVKALHSKDG-RDYI 360 (488)
T ss_pred HHHh--h---hhhccCcccCchHHH-------HHHHHHHHHHHHH----HHHHHHhcCCc--ceEEeeeeecccc-hhhe
Confidence 2111 1 111223333333211 11000 0000111 01111233322 5688999999888 7899
Q ss_pred EEEeC
Q 010065 369 IEYNV 373 (519)
Q Consensus 369 iEiN~ 373 (519)
+|+|-
T Consensus 361 ~eV~d 365 (488)
T KOG3895|consen 361 IEVMD 365 (488)
T ss_pred eeecc
Confidence 99997
|
|
| >PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0083 Score=62.38 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=74.8
Q ss_pred HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHH----------------HHHcCCCCCCeeecCC--------HHHHHHH
Q 010065 162 GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNL----------------CDKYGIPTAKYKTFTD--------PNAAKQY 217 (519)
Q Consensus 162 ~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~----------------l~~~Gi~~p~~~~v~~--------~~~~~~~ 217 (519)
.+.+....-.++++| +-.+.+..||..+.-+ .+++ +|-+..++. .-++.+.
T Consensus 259 ~li~Ay~~~av~~vg--sfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~H---vP~T~~l~~~~~~~~g~~~dL~~~ 333 (445)
T PF14403_consen 259 PLIQAYRDGAVCMVG--SFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRH---VPWTRLLTAGRTTYQGEDVDLVEF 333 (445)
T ss_pred HHHHHHhcCCeEEec--chhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHh---CCceEEEcCccccccccchhHHHH
Confidence 344445555566663 4556777788766433 3333 456666655 2244444
Q ss_pred HHHhCCCEEEEeCCCCCCCcEEE--eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC
Q 010065 218 IQEEGAPIVVKADGLAAGKGVIV--AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE 287 (519)
Q Consensus 218 ~~~~g~P~VvKP~~g~gs~GV~~--v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~ 287 (519)
+....--+|+||.++.||.||.+ =.+.+++.++++++. ++++|+|||++-.......+.+|+
T Consensus 334 ~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~--------~~~yilQe~v~~~~~~~~~~~dg~ 397 (445)
T PF14403_consen 334 AIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA--------REPYILQEYVRPPREPMPAFEDGE 397 (445)
T ss_pred HHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh--------cCCcEEEEEecCCccccccccCCc
Confidence 44445579999999999999998 467899999999985 369999999986333333444555
|
|
| >KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0073 Score=64.83 Aligned_cols=208 Identities=14% Similarity=0.127 Sum_probs=113.6
Q ss_pred CcEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCH---HHHHHHHH-----
Q 010065 148 VGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDP---NAAKQYIQ----- 219 (519)
Q Consensus 148 id~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~---~~~~~~~~----- 219 (519)
.|++|.....++--.-|....++.-|++-++...-.+..|+....++|++.||++|++..+... +++..+++
T Consensus 91 CdcLIsFhSsGFPLdKAiaY~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~v 170 (1018)
T KOG1057|consen 91 CDCLISFHSKGFPLDKAVAYAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHV 170 (1018)
T ss_pred cceEEEeccCCCChHHHHHHHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeE
Confidence 5778874333331112233445667888899999999999999999999999999999887621 22333332
Q ss_pred -----HhCCCEEEEeCCCCCCCcEEE--eCCH-HHHHHHHHHHHhh-ccCC-----CCCCcEEEEeccC--CcEEEEEEE
Q 010065 220 -----EEGAPIVVKADGLAAGKGVIV--AMTL-EEAYEAVDSMLLK-NAFG-----SAGCRVIIEEFLE--GEEASFFAL 283 (519)
Q Consensus 220 -----~~g~P~VvKP~~g~gs~GV~~--v~~~-~el~~a~~~~~~~-~~~~-----~~~~~~lvEe~I~--G~E~sv~~l 283 (519)
.+.-|+|=||+++-.. .|++ -.+. ---+..++++-.. ..|. ...+.+|-|||++ |.++-|-.+
T Consensus 171 EVnGevf~KPFVEKPVs~EDH-NIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTV 249 (1018)
T KOG1057|consen 171 EVNGEVFQKPFVEKPVSAEDH-NIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTV 249 (1018)
T ss_pred EEcceeccCCcccCCCCcccc-cEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEee
Confidence 2356999999865422 2222 1111 0111222222111 0010 1246799999998 465555444
Q ss_pred EeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCC
Q 010065 284 VDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKS 363 (519)
Q Consensus 284 ~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g 363 (519)
|-.+.+ .+.+ .....|+.-.-.+.|...-.|.. |+++.....++.+ .|+.- -++.+|+...+ |
T Consensus 250 --Gp~YaH-AEaR-KSPvvDGkV~Rns~GKEvRYpv~-Ls~~EK~iA~KVc--------iAF~Q---~VCGFDLLRa~-G 312 (1018)
T KOG1057|consen 250 --GPDYAH-AEAR-KSPVVDGKVERNSDGKEVRYPVI-LNSSEKQIARKVC--------IAFKQ---TVCGFDLLRAN-G 312 (1018)
T ss_pred --Ccchhh-hhhc-cCccccceeeecCCCceeeceee-cChhhHHHHhHHH--------hhccc---cccchHHhhcC-C
Confidence 321111 1111 11233332222333445556776 7776544444332 34432 34447876544 4
Q ss_pred CceEEEEEeCC
Q 010065 364 GLPKLIEYNVR 374 (519)
Q Consensus 364 ~~~~viEiN~R 374 (519)
+-|++.+|.-
T Consensus 313 -~SYVcDVNGf 322 (1018)
T KOG1057|consen 313 -KSYVCDVNGF 322 (1018)
T ss_pred -ceEEEeccce
Confidence 5899999963
|
|
| >PF14243 DUF4343: Domain of unknown function (DUF4343) | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.055 Score=46.80 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCCeeEEeccccccccc
Q 010065 223 APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRV 301 (519)
Q Consensus 223 ~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~~~~~~~~~~~ 301 (519)
-|++|||.......-=.+..+.+++...- . ...+..+++.+.++- .||.+.++ +|+ ++... .
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~~-~-------~~~~~~V~vSe~v~~~~E~R~fi~-~g~-vv~~s---~---- 64 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGFG-S-------LDPDTPVLVSEVVEIESEWRCFIV-DGE-VVTGS---P---- 64 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccccC-C-------CCCCceEEEeceEeeeeeEEEEEE-CCE-EEEEe---e----
Confidence 48999999866666555667666654211 1 135688999999995 89999777 665 43221 1
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHH-HcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCC
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMS-AEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFG 376 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~-a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G 376 (519)
|..+. ... .+.+..+.+.+.+ . .-... -.+-+|+-++++| .++|+|+|.--+
T Consensus 65 Y~~~~-----------~~~-~~~~~~~~~~~~~--------~~~~~~p--~~~vlDvg~~~~G-~~~lVE~N~~~~ 117 (130)
T PF14243_consen 65 YRGDW-----------DLE-PDPDVVAFAIQAL--------AAAWTLP--PAYVLDVGVTDDG-GWALVEANDGWS 117 (130)
T ss_pred cCCCc-----------ccC-CCHHHHHHHHHHH--------HhcccCC--CeEEEEEEEeCCC-CEEEEEecCccc
Confidence 11110 011 3444444443332 2 12233 4466999999876 699999999763
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.22 Score=48.50 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=73.3
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC--CccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChh-
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD--ATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAP- 158 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~--~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~- 158 (519)
|+|+|+|+.+....++..|.+. |++++....+..+...... ...+ ..+..|.+.+.++++++++|+|+=. ...+
T Consensus 1 m~ILvlGGT~egr~la~~L~~~-g~~v~~s~~t~~~~~~~~~~g~~~v-~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQ-GIEILVTVTTSEGKHLYPIHQALTV-HTGALDPQELREFLKRHSIDILVDATHPFAA 78 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhC-CCeEEEEEccCCccccccccCCceE-EECCCCHHHHHHHHHhcCCCEEEEcCCHHHH
Confidence 5899999976667788888876 8888776544333222111 1122 3455677788899999999998863 2211
Q ss_pred -hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHH
Q 010065 159 -LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQ 219 (519)
Q Consensus 159 -~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~ 219 (519)
.-+.+.+.++++|+||+- ..+..+ .+.+.+..+.+.+++.+.+.
T Consensus 79 ~is~~a~~a~~~~~ipylR-------~eR~~~----------~~~~~~~~v~~~~ea~~~~~ 123 (256)
T TIGR00715 79 QITTNATAVCKELGIPYVR-------FERPPL----------ALGKNIIEVPDIEEATRVAY 123 (256)
T ss_pred HHHHHHHHHHHHhCCcEEE-------EECCCC----------CCCCCeEEeCCHHHHHHHhh
Confidence 123456678889999872 112110 13455667778777666543
|
This enzyme was found to be a monomer by gel filtration. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.061 Score=55.13 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=73.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCC-----CCccccCCCCCCHHHHHHHHHHcCCcEEEECCC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSG-----DATCIPDLDVLDGDAVISFCRKWSVGLVVVGPE 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~-----~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E 156 (519)
+++|+|||+|+..+.+++.|++....++...+.+........ ..+.. .+|..|.+++.+++++. |+||...-
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~-~vD~~d~~al~~li~~~--d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEAL-QVDAADVDALVALIKDF--DLVINAAP 77 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeE-EecccChHHHHHHHhcC--CEEEEeCC
Confidence 478999999988888999998873245544433311111110 11222 57888999999999876 88887322
Q ss_pred hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe
Q 010065 157 APLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY 205 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~ 205 (519)
..+...+.+.+-+.|++|+-.+... .+.+..+..++++|+.....
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~----~~~~~~~~~a~~Agit~v~~ 122 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYE----EPPWKLDEEAKKAGITAVLG 122 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCC----chhhhhhHHHHHcCeEEEcc
Confidence 2222256677888999997322221 12477888889999765443
|
|
| >KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.3 Score=50.81 Aligned_cols=63 Identities=16% Similarity=0.297 Sum_probs=42.8
Q ss_pred HcCCCCCCe-eecCCHHHHHHHHHHhC-CCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC
Q 010065 197 KYGIPTAKY-KTFTDPNAAKQYIQEEG-APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274 (519)
Q Consensus 197 ~~Gi~~p~~-~~v~~~~~~~~~~~~~g-~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~ 274 (519)
+.|+- |++ ..-.+.+++.+..++-. --+||||..+.-|.||++++...++- .+.+++||+||+
T Consensus 279 ef~fm-PrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~p--------------k~rpLvvQ~yie 343 (662)
T KOG2156|consen 279 EFGFM-PRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFP--------------KDRPLVVQKYIE 343 (662)
T ss_pred ccCcc-ceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCC--------------CcccHHHHHHhh
Confidence 44443 444 44457777777765532 22889999999999999998876642 345667777775
|
|
| >COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.017 Score=57.38 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCceeccCCceeEEeccCCCccceeEEEee
Q 010065 33 NNLRFSVGPNFSISFNPQGSKSSFFSTVKC 62 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 62 (519)
+||+|+.+|-|||||||+...++.....||
T Consensus 326 EGi~h~~~P~fSVQ~HPEAsPGPhDt~ylF 355 (368)
T COG0505 326 EGIRHKDLPAFSVQYHPEASPGPHDTRYLF 355 (368)
T ss_pred cceecCCCceEEEccCCCCCCCCcccHHHH
Confidence 799999999999999999998876665555
|
|
| >PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.59 Score=46.36 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=66.6
Q ss_pred CCCeeecCCHHHHHHHHHHh--CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEE
Q 010065 202 TAKYKTFTDPNAAKQYIQEE--GAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEA 278 (519)
Q Consensus 202 ~p~~~~v~~~~~~~~~~~~~--g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~ 278 (519)
+-+...+-+.+++..+...+ +-|+=+||..+.|++|-.++.+.++|..++..+-... . ....+++|+-++. .-|
T Consensus 114 vL~G~tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~-l--~~~GlVLE~~L~~~~T~ 190 (355)
T PF11379_consen 114 VLPGYTVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAE-L--ARHGLVLEEDLEEVVTY 190 (355)
T ss_pred ccCCccccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHH-H--HhCCEEEecccCCCcee
Confidence 44455666778877666554 4799999999999999999999999999988653110 0 1367999999998 889
Q ss_pred EEEEEEeCCeeEEecc
Q 010065 279 SFFALVDGENAIPLES 294 (519)
Q Consensus 279 sv~~l~dg~~~~~~~~ 294 (519)
||.-++-++....+..
T Consensus 191 SVGqv~v~g~~~SY~G 206 (355)
T PF11379_consen 191 SVGQVRVAGLVASYYG 206 (355)
T ss_pred eEEEEEECCEEEEEee
Confidence 9998875553444433
|
|
| >KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.19 Score=53.04 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=38.4
Q ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC
Q 010065 222 GAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274 (519)
Q Consensus 222 g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~ 274 (519)
....|+||....-++|+.++++.+++.+........... ..++.++|+.||+
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~-~~~~~~vv~~yi~ 250 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISE-NNDEGYVVSAYID 250 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhcccccccc-cccccceeeeecc
Confidence 468999999999999999999999988776432210000 2356788888887
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.2 Score=43.12 Aligned_cols=91 Identities=21% Similarity=0.324 Sum_probs=58.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCC-CHHHHHHHHHHcCCcEEEECC---Ch
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVL-DGDAVISFCRKWSVGLVVVGP---EA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~-d~~~l~~~~~~~~id~Vi~g~---E~ 157 (519)
+++|||+|+.+-...++..|.+. |+++++......+.... ....+ ..-.. +.+.+.++++++++++|+=.. -.
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~-g~~v~~Svat~~g~~~~-~~~~v-~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~ 78 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAA-GVDIVLSLAGRTGGPAD-LPGPV-RVGGFGGAEGLAAYLREEGIDLVIDATHPYAA 78 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhC-CCeEEEEEccCCCCccc-CCceE-EECCCCCHHHHHHHHHHCCCCEEEECCCccHH
Confidence 46899999987777788888766 88777654443222111 11112 22233 789999999999999998521 11
Q ss_pred hhHHHHHHHHHHCCCCee
Q 010065 158 PLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~ 175 (519)
..-+.+.+.++++|+||+
T Consensus 79 ~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 79 QISANAAAACRALGIPYL 96 (248)
T ss_pred HHHHHHHHHHHHhCCcEE
Confidence 112345666788888886
|
|
| >KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.48 Score=47.13 Aligned_cols=102 Identities=29% Similarity=0.294 Sum_probs=71.2
Q ss_pred HhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC-CCEEEEeCCCCCC-----------CcEEEeCCHHHHHHHH
Q 010065 184 LEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG-APIVVKADGLAAG-----------KGVIVAMTLEEAYEAV 251 (519)
Q Consensus 184 ~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g-~P~VvKP~~g~gs-----------~GV~~v~~~~el~~a~ 251 (519)
+...-+...+++++.|+.+|+.+...+++++.+++++++ --+|||.-.-.|+ .||.+|.+++|.++.-
T Consensus 23 L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va 102 (434)
T KOG2799|consen 23 LGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVA 102 (434)
T ss_pred hhHHHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHH
Confidence 334455668999999999999999999999999999998 5599998533332 3899999999998887
Q ss_pred HHHHhhccC-------CCCCCcEEEEeccCC-cEEEEEEEEe
Q 010065 252 DSMLLKNAF-------GSAGCRVIIEEFLEG-EEASFFALVD 285 (519)
Q Consensus 252 ~~~~~~~~~-------~~~~~~~lvEe~I~G-~E~sv~~l~d 285 (519)
..+...+-+ +..-..++|=+...+ .|+.+..+.|
T Consensus 103 ~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~d 144 (434)
T KOG2799|consen 103 SQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMD 144 (434)
T ss_pred HHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHh
Confidence 777643211 111123444444444 5666665543
|
|
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.65 E-value=2.6 Score=40.34 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=71.6
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCC-CCccccCCCCCCHHHHHHHHHHcCCcEEEECCC-hh-
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSG-DATCIPDLDVLDGDAVISFCRKWSVGLVVVGPE-AP- 158 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~-~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E-~~- 158 (519)
+++|+|+|+..-..+++..|... +...++..-..-+..... ..... ..-..+.+.+.++.+++++|.++=.+- .+
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~-~~~~~~ss~t~~g~~l~~~~~~~~-~~G~l~~e~l~~~l~e~~i~llIDATHPyAa 79 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAA-PVDIILSSLTGYGAKLAEQIGPVR-VGGFLGAEGLAAFLREEGIDLLIDATHPYAA 79 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhcc-CccEEEEEcccccccchhccCCee-ecCcCCHHHHHHHHHHcCCCEEEECCChHHH
Confidence 46899999887666778887755 322332221111111110 11111 334567899999999999999885311 11
Q ss_pred -hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC
Q 010065 159 -LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG 222 (519)
Q Consensus 159 -~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g 222 (519)
.-+...+.++..|+||+- ..+-++. .+ .+++..+.+.+++.+.+.+.+
T Consensus 80 ~iS~Na~~aake~gipy~r-------~eRP~~~-------~~--gd~~~~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 80 RISQNAARAAKETGIPYLR-------LERPPWA-------PN--GDNWIEVADIEEAAEAAKQLG 128 (257)
T ss_pred HHHHHHHHHHHHhCCcEEE-------EECCccc-------cC--CCceEEecCHHHHHHHHhccC
Confidence 123345678888999872 1111110 00 467788889998888777665
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.79 Score=44.97 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=39.1
Q ss_pred cEEEEEeCChhHHHHHHHHHhcC--CCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSH--SCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~--g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+|||+|++| ++.+.|.+.. +.+++.++.. .+|..|.+.+.++.++.+||+||.
T Consensus 1 M~iLi~G~~G---qLG~~L~~~l~~~~~v~a~~~~--------------~~Ditd~~~v~~~i~~~~PDvVIn 56 (281)
T COG1091 1 MKILITGANG---QLGTELRRALPGEFEVIATDRA--------------ELDITDPDAVLEVIRETRPDVVIN 56 (281)
T ss_pred CcEEEEcCCC---hHHHHHHHHhCCCceEEeccCc--------------cccccChHHHHHHHHhhCCCEEEE
Confidence 4699999886 3566666553 3555544221 357788899999999999999997
|
|
| >PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.12 Score=43.01 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=41.9
Q ss_pred cCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeeccccccccccccccccC
Q 010065 466 TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 466 ~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~~ 518 (519)
.+..++.+++.|.|+++|++++.++++...+.| .+.|.=+.++.|...++.|+
T Consensus 47 yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~Gv~TNi~fl~~ll~~~~f~~g~~~T~ 104 (107)
T PF02785_consen 47 YDSMIAKLIVHGPDREEAIARLRRALAETVIEGVKTNIPFLRALLAHPEFRSGTYDTG 104 (107)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHHHHHEEESSSHSHHHHHHHHTSHHHHTT-SSTT
T ss_pred chhhhhhheeeccchHHHHHHHHhhcceEEEECccCCHHHHHHHhCCcccccCCCeee
Confidence 346688999999999999999999999999999 35566666677766666553
|
It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A .... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.53 E-value=1.4 Score=51.22 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=70.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCc-------------EEEEecCCCCCcCC-C---CCccccCCCCCCHHHHHHHHH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCD-------------AVFCAPGNAGISNS-G---DATCIPDLDVLDGDAVISFCR 144 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~-------------~v~~~~~~~~~~~~-~---~~~~v~~~d~~d~~~l~~~~~ 144 (519)
+++|+|||+|......+..|.+..+++ +.+.+++....... . ....+ .+|..|.+.+.++++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v-~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAV-QLDVSDSESLLKYVS 647 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceE-EeecCCHHHHHHhhc
Confidence 679999999976667788887765555 33333221111111 0 11123 567788888887766
Q ss_pred HcCCcEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 010065 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204 (519)
Q Consensus 145 ~~~id~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~ 204 (519)
. +|+|+...-..+-..+++.+-+.|++++..+... .+-..+.+.++++|+..-.
T Consensus 648 ~--~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~----~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 648 Q--VDVVISLLPASCHAVVAKACIELKKHLVTASYVS----EEMSALDSKAKEAGITILC 701 (1042)
T ss_pred C--CCEEEECCCchhhHHHHHHHHHcCCCEEECcCCH----HHHHHHHHHHHHcCCEEEE
Confidence 4 8999985333333456777888999998544111 1223456778888887644
|
|
| >smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.22 Score=41.42 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=39.2
Q ss_pred cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccccc
Q 010065 466 TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 466 ~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~~~ 517 (519)
.+..++.+|+.|+|+++|++++.++++...+.|. |.+.=+.++.|...++-|
T Consensus 47 yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~Gv~TN~~~l~~ll~~~~f~~g~~~T 103 (107)
T smart00878 47 YDSMIAKLIVHGETREEAIARLRRALDEFRIEGVKTNIPFLRALLRHPDFRAGDVDT 103 (107)
T ss_pred hhhhceEEEEEcCCHHHHHHHHHHHHHhCEEECccCCHHHHHHHhcCHhhhcCcccc
Confidence 3466789999999999999999999999999983 333334456655554444
|
Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. |
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=89.19 E-value=2.4 Score=41.01 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=53.5
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCC-C--CCccccCCCCC-CHHHHHHHHHHcCCcEEEECC-C-
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNS-G--DATCIPDLDVL-DGDAVISFCRKWSVGLVVVGP-E- 156 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~--~~~~v~~~d~~-d~~~l~~~~~~~~id~Vi~g~-E- 156 (519)
|+|||+|+..-...++..|.+. |+ +++....+-+.... . ....+ ..... +.+.+.++++++++++|+=.. -
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~-g~-v~~sv~t~~g~~~~~~~~~~~~v-~~G~lg~~~~l~~~l~~~~i~~vIDATHPf 77 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEA-GY-VIVSVATSYGGELLKPELPGLEV-RVGRLGDEEGLAEFLRENGIDAVIDATHPF 77 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhc-CC-EEEEEEhhhhHhhhccccCCceE-EECCCCCHHHHHHHHHhCCCcEEEECCCch
Confidence 6899999987777789999877 76 33222111111111 0 01112 23333 788999999999999888421 1
Q ss_pred -hhhHHHHHHHHHHCCCCee
Q 010065 157 -APLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 157 -~~~~~~~a~~le~~gip~~ 175 (519)
...-+.+.+.++++|+||+
T Consensus 78 A~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 78 AAEISQNAIEACRELGIPYL 97 (249)
T ss_pred HHHHHHHHHHHHhhcCcceE
Confidence 1112344566777888876
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.08 E-value=1.9 Score=42.50 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=48.1
Q ss_pred cEEEEEeCChh--HHHHHHHHHhcCCCcEEEEecCCCCC-cCCCC--CccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGR--EHALCYALKRSHSCDAVFCAPGNAGI-SNSGD--ATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~--~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~--~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+|||.|+.|. .|. ++.|.+. |++++++|.-..+. ..+.. ...+ ..|..|.+.|.++..+++||+|+-
T Consensus 1 ~~iLVtGGAGYIGSHt-v~~Ll~~-G~~vvV~DNL~~g~~~~v~~~~~~f~-~gDi~D~~~L~~vf~~~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHT-VRQLLKT-GHEVVVLDNLSNGHKIALLKLQFKFY-EGDLLDRALLTAVFEENKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHH-HHHHHHC-CCeEEEEecCCCCCHHHhhhccCceE-EeccccHHHHHHHHHhcCCCEEEE
Confidence 57999997763 354 7777776 99999886443232 22221 1333 578899899999999999999996
|
|
| >PRK05849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.87 E-value=39 Score=38.38 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=92.8
Q ss_pred HhcCHHHHHHHHHH--cCCCCCCeeecCC------HHHHHHHHH-Hh-CCCEEEEeCC------CCCCCcE--EE--eCC
Q 010065 184 LEGSKNFMKNLCDK--YGIPTAKYKTFTD------PNAAKQYIQ-EE-GAPIVVKADG------LAAGKGV--IV--AMT 243 (519)
Q Consensus 184 ~~~dK~~~k~~l~~--~Gi~~p~~~~v~~------~~~~~~~~~-~~-g~P~VvKP~~------g~gs~GV--~~--v~~ 243 (519)
.+..|..+-..|+. .|.++|+.+++.. .+.+.+.+. .+ +-|++|..+. +.+.-|. .+ +..
T Consensus 7 ~~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~ 86 (783)
T PRK05849 7 FFQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNA 86 (783)
T ss_pred ccchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCC
Confidence 34568888888888 8999999887764 223333232 22 3689999752 1122333 23 333
Q ss_pred --HHHHHHHHHHHHhhccCC-CCCCcEEEEeccCCcEEEEEEEE-e---CCeeEEe--ccccccccccCCCCCCCCCCce
Q 010065 244 --LEEAYEAVDSMLLKNAFG-SAGCRVIIEEFLEGEEASFFALV-D---GENAIPL--ESAQDHKRVGDGDTGPNTGGMG 314 (519)
Q Consensus 244 --~~el~~a~~~~~~~~~~~-~~~~~~lvEe~I~G~E~sv~~l~-d---g~~~~~~--~~~~~~~~~~~~~~~~~~g~~~ 314 (519)
.+++.++++..++. |. ..+..++||++|.+...+=-++. | |...... ...-....+.++...+ ...
T Consensus 87 ~~~~~L~~AI~~V~aS--~~~~~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~t~---~~~ 161 (783)
T PRK05849 87 DSKDQLLKAIEKVIAS--YGTSKDDEILVQPMLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSGGS---ATT 161 (783)
T ss_pred CcHHHHHHHHHHHHHh--hCCCCCCeEEEEeCccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccCCC---Cce
Confidence 34899999998853 21 23467999999985333322332 2 2211111 1000111122211110 000
Q ss_pred EEe--cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeee-EEEEEEEEEcCCCceEEEEEeC
Q 010065 315 AYS--PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVG-VLYAGLMIEKKSGLPKLIEYNV 373 (519)
Q Consensus 315 ~~~--P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G-~~~vdf~~~~~g~~~~viEiN~ 373 (519)
.+. ....++++...++.+.+.+ +... |.+ +..|||-+|++| ++|++-.=|
T Consensus 162 ~~~~~~~~~l~p~~~~~L~~la~~-----LE~~---fg~dpqDIEfaid~~g-~L~lLQ~RP 214 (783)
T PRK05849 162 VYHYRDALVFKPPRLKKLIELIRE-----LEAL---FGCDFLDIEFAIDEKE-ELYILQVRP 214 (783)
T ss_pred eeeccccccCCHHHHHHHHHHHHH-----HHHH---cCCCCeeeEEEEccCC-EEEEEEccC
Confidence 111 1122667777777666532 1111 213 788999998777 789876544
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.9 Score=42.70 Aligned_cols=56 Identities=27% Similarity=0.430 Sum_probs=38.7
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|||||+|+.| ....+...+.+. |++++.+... .+|..|.+.+.++.++.++|+||.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r~--------------~~dl~d~~~~~~~~~~~~pd~Vin 57 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATSRS--------------DLDLTDPEAVAKLLEAFKPDVVIN 57 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEESTT--------------CS-TTSHHHHHHHHHHH--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCch--------------hcCCCCHHHHHHHHHHhCCCeEec
Confidence 7999999654 456677777654 7666554211 356778899999999999999997
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.72 E-value=3.7 Score=39.15 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=60.8
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcC-CC---CCccccCCCCCCHHHHHHHHHHcCCcEEEE-CCCh
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISN-SG---DATCIPDLDVLDGDAVISFCRKWSVGLVVV-GPEA 157 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~---~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~-g~E~ 157 (519)
|+++|+|.|.....+++.|.+. |.+++.++.+...... .+ ....+ ..|..+.+.|.++ --.+.|.++. .++|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~~~~~~~~~~v-~gd~t~~~~L~~a-gi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEERVEEFLADELDTHVV-IGDATDEDVLEEA-GIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHHHHHHHhhhhcceEEE-EecCCCHHHHHhc-CCCcCCEEEEeeCCC
Confidence 6899999998778899999877 8999988755321111 01 11112 3566666655543 2345777776 3333
Q ss_pred hhHHHHHHH-HHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcC
Q 010065 158 PLVSGLANK-LVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYG 199 (519)
Q Consensus 158 ~~~~~~a~~-le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~G 199 (519)
....-++.. ++.+|+|.+ +....|.... +.+++.|
T Consensus 78 ~~N~i~~~la~~~~gv~~v------iar~~~~~~~-~~~~~~g 113 (225)
T COG0569 78 EVNSVLALLALKEFGVPRV------IARARNPEHE-KVLEKLG 113 (225)
T ss_pred HHHHHHHHHHHHhcCCCcE------EEEecCHHHH-HHHHHcC
Confidence 332122222 344688755 3444555544 4556666
|
|
| >PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH [] | Back alignment and domain information |
|---|
Probab=84.38 E-value=4.8 Score=34.03 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=54.5
Q ss_pred EEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC--cCCCCCccccCCC-CCC--HHHHHHHHHHcCCcEEEECCChhhH
Q 010065 86 LVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI--SNSGDATCIPDLD-VLD--GDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 86 liiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~--~~~~~~~~v~~~d-~~d--~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
..+|+-. ..++..-++++ |.+++.+....... ......+.+..+| ..| -+.+.+.+.+.+ ..++|.+--...
T Consensus 2 ~tlaSHS-ALqIl~GAk~E-GFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f~di~~~~~q~~L~~~N-~I~VPhgSfv~Y 78 (124)
T PF06849_consen 2 ATLASHS-ALQILDGAKDE-GFRTIAICQKGREKFYRRFPFIDEVIVLDSFSDILSEEVQEKLREMN-AIFVPHGSFVAY 78 (124)
T ss_dssp EEESSTT-HHHHHHHHHHT-T--EEEEEETTCHHHHHTTTT-SEEEEESSCGHCCSHHHHHHHHHTT-EEE--BTTHHHH
T ss_pred eeeechH-HHHHhhhHHHc-CCcEEEEECCCCcchhhhcCcCcEEEEeCCHHHHHhHHHHHHHHHCC-eEEecCCCeeEe
Confidence 3455542 34567777767 99998886442211 0111111110112 111 123444444433 234554443333
Q ss_pred HHHHHHHHH-CCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe
Q 010065 161 SGLANKLVK-AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY 205 (519)
Q Consensus 161 ~~~a~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~ 205 (519)
.++ +..|. +.+|++|+ -...++..|...-+.+|+++|||.|+.
T Consensus 79 ~G~-d~ie~~~~vP~FGN-R~lLrwEseR~~~~~lL~~AgI~~P~~ 122 (124)
T PF06849_consen 79 VGY-DRIENEFKVPIFGN-RNLLRWESERDKERNLLEKAGIPMPRK 122 (124)
T ss_dssp H-H-HHHHHT-SS-EES--CCGGHCCCSHHHHHHHHHHTT-BB--B
T ss_pred ecH-HHHhhcCCCCeecC-hHHHHhhhhhhhHHHHHHHcCCCCCcc
Confidence 354 34555 99999975 445666668888888999999999984
|
Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A. |
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.32 E-value=24 Score=33.28 Aligned_cols=133 Identities=22% Similarity=0.272 Sum_probs=76.6
Q ss_pred EEEEEeCChhH--HHHHHHHHhcCCCcEEEEe---cCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE---CC
Q 010065 84 VVLVIGGGGRE--HALCYALKRSHSCDAVFCA---PGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV---GP 155 (519)
Q Consensus 84 ~vliiG~g~~~--~~l~~~l~~~~g~~~v~~~---~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~---g~ 155 (519)
+++.+-+||.. +++.++++ .|+++..+- |.+. +.+ .....+.+.....++..++..+.. +.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~--~G~eV~~Ll~~~p~~~--------dS~-m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~ 70 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALE--EGHEVVYLLTVKPENG--------DSY-MFHTPNLELAELQAEAMGIPLVTFDTSGE 70 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHH--cCCeeEEEEEEecCCC--------Cee-eeeccchHHHHHHHHhcCCceEEEecCcc
Confidence 44445455433 44455543 377776542 3332 111 223344455555566667776554 23
Q ss_pred ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEe
Q 010065 156 EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA 229 (519)
Q Consensus 156 E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP 229 (519)
++.-+..+++.++.+++-.+ ..-++..-..|.++.++++++|+.+-...-=.+++++.+..-+.||-++|=.
T Consensus 71 ~e~eve~L~~~l~~l~~d~i--v~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~ 142 (223)
T COG2102 71 EEREVEELKEALRRLKVDGI--VAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVA 142 (223)
T ss_pred chhhHHHHHHHHHhCcccEE--EEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEE
Confidence 44456678888888886644 3345666678999999999999976322222355565554556687765433
|
|
| >PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=82.96 E-value=0.59 Score=48.38 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred CCceeccCCceeEEeccCCCccce
Q 010065 33 NNLRFSVGPNFSISFNPQGSKSSF 56 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~ 56 (519)
+|++|..+|.|+|||||+...+..
T Consensus 386 egi~~~~~pi~gVQFHPEa~pgp~ 409 (415)
T PLN02771 386 AGLAFPALNVMSLQYHPEASPGPH 409 (415)
T ss_pred EEEEECCCCEEEEEcCCCCCCCCC
Confidence 699999999999999999876554
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=82.10 E-value=8.4 Score=40.01 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=60.6
Q ss_pred CceeEEeccCCCccceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCC
Q 010065 41 PNFSISFNPQGSKSSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGI 119 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~ 119 (519)
|...+.+.+..+......+..-+.....+..+..=-....+.++|+|+|+.| ....+++.|.+. |++++.+..+....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R~~~~~ 97 (390)
T PLN02657 19 PSNRLAASLGGALVRRAAAASRGSRATAAAAAQSFRSKEPKDVTVLVVGATGYIGKFVVRELVRR-GYNVVAVAREKSGI 97 (390)
T ss_pred ccchhhhcccccccccccccccCccCCCccccccccccCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEechhhc
Confidence 3333444444444333333444444433322222112233467999999764 455678888776 88887775432111
Q ss_pred c----------CCCCCccccCCCCCCHHHHHHHHHHc--CCcEEEE
Q 010065 120 S----------NSGDATCIPDLDVLDGDAVISFCRKW--SVGLVVV 153 (519)
Q Consensus 120 ~----------~~~~~~~v~~~d~~d~~~l~~~~~~~--~id~Vi~ 153 (519)
. .......+ ..|..|.+.+.+.++.. ++|.|+.
T Consensus 98 ~~~~~~~~~~~~~~~v~~v-~~Dl~d~~~l~~~~~~~~~~~D~Vi~ 142 (390)
T PLN02657 98 RGKNGKEDTKKELPGAEVV-FGDVTDADSLRKVLFSEGDPVDVVVS 142 (390)
T ss_pred cccchhhHHhhhcCCceEE-EeeCCCHHHHHHHHHHhCCCCcEEEE
Confidence 0 00112223 56888888888888765 6899985
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=81.64 E-value=6.3 Score=35.61 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=43.4
Q ss_pred EEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 85 VLVIGG-GGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 85 vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+|+|+ |.....++..|.+. |++++.+..+............+ ..|..|.+.+.+..+ +.|.|+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~~~~~~~~~~~~-~~d~~d~~~~~~al~--~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPSKAEDSPGVEII-QGDLFDPDSVKAALK--GADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGGGHHHCTTEEEE-ESCTTCHHHHHHHHT--TSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCchhcccccccccc-eeeehhhhhhhhhhh--hcchhhh
Confidence 789997 44567788888887 78888776542221111122333 578888888887766 6888887
|
... |
| >TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | Back alignment and domain information |
|---|
Probab=80.15 E-value=16 Score=38.68 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=54.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcC--CCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC---CC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSH--SCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG---PE 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~--g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g---~E 156 (519)
..+++|+|+|.....++..+.+.. |++.+-+-++++.... ....+ ++ ..+.+++.++++++++|.|+.. .+
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~--~i~g~-pV-lg~~~~l~~~i~~~~id~ViIa~p~~~ 200 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDRV--EVAGL-PV-LGKLDDLVELVRAHRVDEVIIALPLSE 200 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCccccc--ccCCC-cc-cCCHHHHHHHHHhCCCCEEEEecCccc
Confidence 467999999976666777776543 6666554332221111 11111 11 2346778899999999988873 22
Q ss_pred hhhHHHHHHHHHHCCCCee
Q 010065 157 APLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~ 175 (519)
......+.+.++..|+++.
T Consensus 201 ~~~~~~ll~~~~~~gv~V~ 219 (445)
T TIGR03025 201 EARILELLLQLRDLGVDVR 219 (445)
T ss_pred HHHHHHHHHHHHhcCCEEE
Confidence 2334456677888888764
|
Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 519 | ||||
| 1gso_A | 431 | Glycinamide Ribonucleotide Synthetase (Gar-Syn) Fro | 1e-122 | ||
| 3mjf_A | 431 | Phosphoribosylamine-Glycine Ligase From Yersinia Pe | 1e-114 | ||
| 3lp8_A | 442 | Crystal Structure Of Phosphoribosylamine-Glycine Li | 1e-113 | ||
| 2yrw_A | 451 | Crystal Structure Of Gar Synthetase From Geobacillu | 1e-110 | ||
| 2xd4_A | 422 | Nucleotide-Bound Structures Of Bacillus Subtilis Gl | 1e-105 | ||
| 2yw2_A | 424 | Crystal Structure Of Gar Synthetase From Aquifex Ae | 1e-102 | ||
| 2qk4_A | 452 | Human Glycinamide Ribonucleotide Synthetase Length | 1e-100 | ||
| 2xcl_A | 422 | Nucleotide-Bound Structures Of Bacillus Subtilis Gl | 1e-100 | ||
| 2ip4_A | 417 | Crystal Structure Of Glycinamide Ribonucleotide Syn | 2e-94 | ||
| 1vkz_A | 412 | Crystal Structure Of Phosphoribosylamine--Glycine L | 1e-57 | ||
| 4dim_A | 403 | Crystal Structure Of Phosphoribosylglycinamide Synt | 4e-05 |
| >pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E. Coli Length = 431 | Back alignment and structure |
|
| >pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis Length = 431 | Back alignment and structure |
|
| >pdb|3LP8|A Chain A, Crystal Structure Of Phosphoribosylamine-Glycine Ligase From Ehrlichia Chaffeensis Length = 442 | Back alignment and structure |
|
| >pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus Kaustophilus Length = 451 | Back alignment and structure |
|
| >pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis Glycinamide Ribonucleotide Synthetase Length = 422 | Back alignment and structure |
|
| >pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus In Complex With Atp Length = 424 | Back alignment and structure |
|
| >pdb|2QK4|A Chain A, Human Glycinamide Ribonucleotide Synthetase Length = 452 | Back alignment and structure |
|
| >pdb|2XCL|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis Glycinamide Ribonucleotide Synthetase Length = 422 | Back alignment and structure |
|
| >pdb|2IP4|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Synthetase From Thermus Thermophilus Hb8 Length = 417 | Back alignment and structure |
|
| >pdb|1VKZ|A Chain A, Crystal Structure Of Phosphoribosylamine--Glycine Ligase (Tm1250) From Thermotoga Maritima At 2.30 A Resolution Length = 412 | Back alignment and structure |
|
| >pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase From Anaerococcus Prevotii Length = 403 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Length = 431 | Back alignment and structure |
|---|
Score = 768 bits (1985), Expect = 0.0
Identities = 220/426 (51%), Positives = 292/426 (68%), Gaps = 4/426 (0%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
+L+IG GGREHAL + +S D ++ APGNAG + + + D +++F +
Sbjct: 6 ILIIGNGGREHALGWKAAQSPLADKIYVAPGNAGTALEPTLENVD-IAATDIAGLLAFAQ 64
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+GL +VGPEAPLV G+ + AG+ FGP+ AA LEGSK F K+ ++ IP+A+
Sbjct: 65 SHDIGLTIVGPEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAE 124
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+ FTD AA Y++++GAPIV+KADGLAAGKGVIVAMT EEA AV+ ML NAFG AG
Sbjct: 125 YQNFTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAG 184
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
R+++EEFL+GEEASF +VDGEN +P+ ++QDHKRVGDGDTGPNTGGMGAYSPAPV+T
Sbjct: 185 HRIVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTD 244
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
++ VM+ +I PTV+GM+AEG + G LYAGLMI G PK+IE+N RFGDPE Q +M
Sbjct: 245 DVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISAD-GQPKVIEFNCRFGDPETQPIM 303
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
+R+ SDL E+ LA +G+L T +W ++ VV+A+ GYP Y +G I L + E
Sbjct: 304 LRMRSDLVELCLAGTQGKLNEKTSDWDERPSLGVVLAAGGYPADYRQGDVIHGLPQQE-- 361
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
K+FHAGT L+ + + GGRVL VTA G+ V +AQ AY E I W G F R+D
Sbjct: 362 VKDGKVFHAGTKLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQWEGVFCRKD 421
Query: 505 IGWRAL 510
IG+RA+
Sbjct: 422 IGYRAI 427
|
| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Length = 442 | Back alignment and structure |
|---|
Score = 760 bits (1964), Expect = 0.0
Identities = 207/448 (46%), Positives = 298/448 (66%), Gaps = 7/448 (1%)
Query: 63 LAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNS 122
++ A T + VLVIG GGREH++ + +++S + +F APG G+S
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMSG- 60
Query: 123 GDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAA 182
A I D+D+ VI C+K + LVV+GPE PL++GL++ L + GI FGPS AA
Sbjct: 61 -LADII-DIDINSTIEVIQVCKKEKIELVVIGPETPLMNGLSDALTEEGILVFGPSKAAA 118
Query: 183 ALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242
LE SK F K LC +YGIPTAKY F D N+A ++I + P+VVKADGLA GKG ++
Sbjct: 119 RLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHKLPLVVKADGLAQGKGTVICH 178
Query: 243 TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVG 302
T EEAY AVD+ML+ + FG AGC +IIEEFLEG+E SFF LVDG N + L AQD+K +G
Sbjct: 179 THEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEGKEISFFTLVDGSNPVILGVAQDYKTIG 238
Query: 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKK 362
D + GPNTGGMG+YS ++T+E++ ++++ II PT+K M +F G+L+AG++I+K
Sbjct: 239 DNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKN 298
Query: 363 SGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMAS 422
PKL+EYNVRFGDPE Q ++ RL SD ++L +G+L ++ S +A+ VV+AS
Sbjct: 299 E--PKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGKLGNESVELSKKAALCVVVAS 356
Query: 423 KGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEE 482
+GYPG Y+K S I +E E++ P+V++ HAGT + N+++ GRV+ V A+G+++
Sbjct: 357 RGYPGEYKKNSIINGIENIEKL-PNVQLLHAGTRRE-GNNWVSDSGRVINVVAQGENLAS 414
Query: 483 AQDRAYLAVEEINWPGGFYRRDIGWRAL 510
A+ +AY A++ ++WP G YR DIG AL
Sbjct: 415 AKHQAYAALDLLDWPDGIYRYDIGSCAL 442
|
| >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Length = 424 | Back alignment and structure |
|---|
Score = 746 bits (1929), Expect = 0.0
Identities = 196/426 (46%), Positives = 275/426 (64%), Gaps = 9/426 (2%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLV+G GGREHA+ + + +S ++ A GNAGI A + + D + + F +
Sbjct: 3 VLVVGNGGREHAIAWKVAQSPLVKELYVAKGNAGIWE--IAKRVD-ISPTDVEKLAEFAK 59
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
V +VGPEAPLV G+ ++ K G+ FGP+ EAA LEGSK F K KYGIPTA+
Sbjct: 60 NEGVDFTIVGPEAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTAR 119
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+ FTD AK+Y+++ GAPIVVKADGLAAGKG +V T+E+A E +D L K FG +
Sbjct: 120 YEVFTDFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSS 179
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
RV+IEEFLEGEEAS+ +++G+ +PL ++QDHKR+ D D GPNTGGMGAYSP PV+ +
Sbjct: 180 ERVVIEEFLEGEEASYIVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINE 239
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E++ + E I+ +KG+ EG + G LYAGLMI K+ PK++E+NVR GDPE Q ++
Sbjct: 240 EVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEG--PKVLEFNVRLGDPEAQPIL 297
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
+R+++D E LL G+ V + A+ VV+AS+GYP E G I L+ + +
Sbjct: 298 MRVKNDFLETLLNFYEGKD--VHIKEDERYALDVVLASRGYPEKPETGKIIHGLDYLKSM 355
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
V +FHAGT + + +GGRVL V A GK ++EA++RAY A+ + + G YR+D
Sbjct: 356 -EDVVVFHAGTKKE-GNFTVTSGGRVLNVCAYGKTLKEAKERAYEAIRYVCFEGMHYRKD 413
Query: 505 IGWRAL 510
IG +A
Sbjct: 414 IGDKAF 419
|
| >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Length = 451 | Back alignment and structure |
|---|
Score = 747 bits (1930), Expect = 0.0
Identities = 212/435 (48%), Positives = 290/435 (66%), Gaps = 11/435 (2%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLVIG GGREHA+ + +S ++ APGN GI++ A + +D LD +A++ F +
Sbjct: 24 VLVIGRGGREHAIAWKAAQSPLVGKLYVAPGNPGIAD--VAELVH-IDELDIEALVQFAK 80
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ ++ L +VGPEAPL SG+ ++ + G+ FGPS AA +EGSK F K L KYGIPTA
Sbjct: 81 QQAIDLTIVGPEAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTAD 140
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
+ FT AK YI+++GAPIV+KADGLAAGKGV VA T+EEA A + L+ FG+AG
Sbjct: 141 HAAFTSYEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAG 200
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
+V+IEE+LEGEE SF A V+GE PL AQDHKR DGD GPNTGGMGAYSP P ++
Sbjct: 201 SQVVIEEYLEGEEFSFMAFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISD 260
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E+ +E+I+ P K ++AEG F+GVLYAGLM PK+IE+N RFGDPE QV++
Sbjct: 261 EMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANG--PKVIEFNARFGDPEAQVVL 318
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
RL++DL E +LA G+ + L W+ + + VV+A+KGYPG+YE+G+EI+ L+
Sbjct: 319 PRLKTDLVEAVLAVMDGKE--LELEWTDEAVLGVVLAAKGYPGAYERGAEIRGLDRIS-- 374
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
P +FHAGT + G + GGRVL + AKG+ + +A+++AY + I+ G FYRRD
Sbjct: 375 -PDALLFHAGTKRE-GGAWYTNGGRVLLLAAKGETLAKAKEKAYEQLAAIDCDGLFYRRD 432
Query: 505 IGWRALPQKQFATRE 519
IG RA+ + A
Sbjct: 433 IGRRAIERASAAYTR 447
|
| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Length = 422 | Back alignment and structure |
|---|
Score = 745 bits (1926), Expect = 0.0
Identities = 216/430 (50%), Positives = 275/430 (63%), Gaps = 11/430 (2%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VL+IG GGREH L + +S + VF APGN G++ A + ++ D ++SF +
Sbjct: 3 VLIIGKGGREHTLAWKAAQSSLVENVFAAPGNDGMAA--SAQLVN-IEESDHAGLVSFAK 59
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ VGL +VGPE PL+ GL ++ KAG+ FGPS AA +EGSK F K+L KY IPTA+
Sbjct: 60 QNQVGLTIVGPEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAE 119
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+TFT + AK Y+QE+GAPIV+KADGLAAGKGV VAMT EEA + L FG A
Sbjct: 120 YETFTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDAS 179
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
V+IEE+L GEE S A V GE P+ AQDHKR DGD GPNTGGMGAYSP P +++
Sbjct: 180 ASVVIEEYLSGEEFSLMAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISE 239
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
E +E+I+ P K M EG F GVLYAGLM+ + K+IE+N RFGDPE QV++
Sbjct: 240 ETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTENG--SKVIEFNARFGDPETQVVL 297
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
R+ESDL +VLL + V L W +A+ VV+AS+GYP SY KG+ I +L
Sbjct: 298 PRMESDLVQVLLDLLDDKE--VDLRWKDTAAVSVVLASEGYPESYAKGTPIGSLAAE--- 352
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
V +FHAGT + G F+ GGRV VTA + E A+DR Y AV+EI PG F+R+D
Sbjct: 353 TEQVVVFHAGTKAE-GGEFVTNGGRVANVTAFDETFEAARDRVYKAVDEIFKPGLFFRKD 411
Query: 505 IGWRALPQKQ 514
IG RAL Q
Sbjct: 412 IGARALKAAQ 421
|
| >2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Length = 452 | Back alignment and structure |
|---|
Score = 741 bits (1915), Expect = 0.0
Identities = 203/432 (46%), Positives = 275/432 (63%), Gaps = 8/432 (1%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VL+IG GGREH L + L +SH V APGNAG + S + + + D A+ FC+
Sbjct: 27 VLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNTA-ISISDHTALAQFCK 85
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ + VVVGPEAPL +G+ L AG+ FGP++EAA LE SK F K D++GIPTA+
Sbjct: 86 EKKIEFVVVGPEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQ 145
Query: 205 YKTFTDPNAAKQYIQEEGAP-IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSA 263
+K FT P A +I P +VVKA GLAAGKGVIVA + EEA +AV ++ + AFG+A
Sbjct: 146 WKAFTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAA 205
Query: 264 GCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLT 323
G ++IEE L+GEE S DG+ P+ AQDHKR+ +GD GPNTGGMGAY PAP ++
Sbjct: 206 GETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVS 265
Query: 324 KELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVL 383
+L + ++++ TV GM EG + G+LYAG+M+ K PK++E+N RFGDPECQV+
Sbjct: 266 NDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNG--PKVLEFNCRFGDPECQVI 323
Query: 384 MVRLESDLAEVLLAACRGELTGVTLNW-SPGSAMVVVMASKGYPGSYEKGSEIQNLEEAE 442
+ L+SDL EV+ + G L W +A+ VVMASKGYPG Y KG EI EA+
Sbjct: 324 LPLLKSDLYEVIQSTLDGLLCTSLPVWLENHTALTVVMASKGYPGDYTKGVEITGFPEAQ 383
Query: 443 QVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYR 502
A +++FHAGTAL +G + GGRVL VTA +++ A + A + I + G YR
Sbjct: 384 --ALGLEVFHAGTALK-NGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYR 440
Query: 503 RDIGWRALPQKQ 514
+DIG+RA+ Q
Sbjct: 441 KDIGFRAIAFLQ 452
|
| >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Length = 417 | Back alignment and structure |
|---|
Score = 726 bits (1876), Expect = 0.0
Identities = 197/430 (45%), Positives = 270/430 (62%), Gaps = 16/430 (3%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLV+G GGREHAL + +S ++ APGNAG+ A +P D +A+ +
Sbjct: 3 VLVVGSGGREHALLWKAAQSPRVKRLYAAPGNAGMEA--LAELVPWNG--DVEALADWAL 58
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
+ L +VGPEAPLV G+A+ G+ FGP+ +AA +EGSK F K L ++YGIPTA+
Sbjct: 59 AEGIDLTLVGPEAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTAR 118
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
Y+ F +P A Y++E G P+VVK GLAAGKGV VA L +A +AV ++L + G
Sbjct: 119 YRVFREPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANIL----NRAEG 174
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
V++EE+LEGEEA+ AL DGE +PL +QDHKR+ DGD GP TGGMGA +P P+
Sbjct: 175 GEVVVEEYLEGEEATVLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEA 234
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
L+ V E I+ P V+G+ AEG + GV+YAGLM+ ++ PK++E+N RFGDPE Q L+
Sbjct: 235 TLRR-VEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREG--PKVLEFNARFGDPEAQALL 291
Query: 385 VRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQV 444
LE+DL E+ L G L G L+W G+A VV+A+ GYP S KG + E E
Sbjct: 292 PLLENDLVELALRVAEGRLAGTRLSWKEGAAACVVLAAPGYPESPRKGIPLHVPEPPE-- 349
Query: 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRD 504
V +FHAGT + G ++ GGRVL V G+D++EA +RAY + ++ +PG YRRD
Sbjct: 350 --GVLVFHAGTRRE-GGRLVSAGGRVLNVVGLGRDLKEALERAYAYIPQVGFPGAVYRRD 406
Query: 505 IGWRALPQKQ 514
IG RAL +
Sbjct: 407 IGRRALARLS 416
|
| >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 412 | Back alignment and structure |
|---|
Score = 684 bits (1768), Expect = 0.0
Identities = 153/438 (34%), Positives = 223/438 (50%), Gaps = 28/438 (6%)
Query: 69 PSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCI 128
S ++ + + V V ++G GGREHA+ +A + V PGNAG D T
Sbjct: 2 GSDKIHHHHHHMKAVRVHILGSGGREHAIGWAF--AKQGYEVHFYPGNAGTKR--DGTNH 57
Query: 129 PDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSK 188
+ + +V+ G E LV G++N FGP E A LEGSK
Sbjct: 58 ------PYEGEKTLKAIPEEDIVIPGSEEFLVEGVSNWRSNV----FGPVKEVARLEGSK 107
Query: 189 NFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAY 248
+ K KYGI TA+++ P ++ I++ P V+KADGLA GKGV++ + EE
Sbjct: 108 VYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETI 167
Query: 249 EAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGP 308
E +++ V+I+EFL G E S A+V+G N + L +D+KR+ DGD GP
Sbjct: 168 EKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGP 227
Query: 309 NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKL 368
NTGGMG++ P + + ++ +E + T+ G+ EG + G LY GLM+ P +
Sbjct: 228 NTGGMGSWGPVEIPSDTIK--KIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD--PYI 283
Query: 369 IEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGS 428
+EYNVR GDPE +V++ +L RG + G A+ VV+A++GYP +
Sbjct: 284 LEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGGK--MEPVEPRGFAVDVVLAARGYPDA 341
Query: 429 YEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAY 488
EKG EI EE IF AG A DG + GGRVL G+ EEA+ +AY
Sbjct: 342 PEKGKEITLPEEG-------LIFFAGVAEK-DGKLVTNGGRVLHCMGTGETKEEARRKAY 393
Query: 489 LAVEEINWPGGFYRRDIG 506
E++++ G YRRDI
Sbjct: 394 ELAEKVHFEGKTYRRDIA 411
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403 | Back alignment and structure |
|---|
Score = 338 bits (868), Expect = e-112
Identities = 77/417 (18%), Positives = 147/417 (35%), Gaps = 33/417 (7%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
+L++G G + L A K + NA A I +D+ + D V +
Sbjct: 10 LLILGAGRGQLGLYKAAK-ELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVK 68
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204
++ + LA K + G + EAA + G K MK KY + TA+
Sbjct: 69 DLNLDGAATCCLDTGIVSLARICDKENLV--GLNEEAAIMCGDKYKMKEAFKKYNVNTAR 126
Query: 205 YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264
+ + N K ++ P++VKA L KG+ +A EEA + + + +
Sbjct: 127 HFVVRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETM----NLTKR 182
Query: 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTK 324
I+EEF+EG E A V + + + D + +G Y P V
Sbjct: 183 DYCIVEEFIEGYEFGAQAFVYKNDVLFVMPHGDETYM-----SHTAVPVGHYVPLDVKDD 237
Query: 325 ELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384
++E K + A G + +++ K +IE R G C +
Sbjct: 238 -----IIEKTKTEVKKAIKALGLNN-CAVNVDMIL--KDNEVYIIELTGRVGA-NCLPEL 288
Query: 385 VRLES--DLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAE 442
V + + +++ + E + WS S ++ + + G + L
Sbjct: 289 VEINYGIEYYKMIASMAISEN--PLVFWSQKSKENKAGLARMIIETEKSGILKEILNSNA 346
Query: 443 QVAPSVKIFH----AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEIN 495
+ + + N + + K + +++ +D+ + + IN
Sbjct: 347 KD-DDIVEITFFKEENDEIKKFENS---NDCIGQIIVKEETLDKCKDKLDVIINNIN 399
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 3e-50
Identities = 60/300 (20%), Positives = 100/300 (33%), Gaps = 42/300 (14%)
Query: 86 LVIGGGGREHALCYALKRSHSCDAVFCA---PGNAGISNSGDATCIPDLDVLD-GDAVIS 141
L+I GR L + V A P + + + +P +D ++ D +++
Sbjct: 7 LLITSAGRRAKLVEYFVKEFKTGRVSTADCSPLASALYMADQHYIVPKIDEVEYIDHLLT 66
Query: 142 FCRKWSVGLVV--VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYG 199
C+ V ++ + PE L++ + G+ A L K M C + G
Sbjct: 67 LCQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQG 126
Query: 200 IPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNA 259
I A+ E P+ VK +A V T+EE +
Sbjct: 127 IAHARTYATMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLF-------- 178
Query: 260 FGSAGCRVIIEEFLEGEEASFFALVDGENAIPL---ESAQDHKRVGDGDTGPNTGGMGAY 316
S +I++E L G+E A VD + + R G+ D +
Sbjct: 179 --SKNTDLIVQELLVGQELGVDAYVDLISGKVTSIFIKEKLTMRAGETDKSRS------- 229
Query: 317 SPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFG 376
VL ++ ++ + G VG L L +G L E N RFG
Sbjct: 230 ----VLRDDV-----FELVEHVLDGS-----GLVGPLDFDLFD--VAGTLYLSEINPRFG 273
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Length = 474 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-25
Identities = 74/462 (16%), Positives = 143/462 (30%), Gaps = 70/462 (15%)
Query: 79 AGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDG-- 136
A + +V I A AL +S I + + D + D
Sbjct: 27 AEKYNLVSFIPRPFAITASHAALIEKYSVAV---------IKDKDYFKSLADFEHPDSIY 77
Query: 137 --------------DAVISFCRKWSVGLVVVGPE--APLVSGLANKLVKAGIPTFGPSSE 180
+ ++ + + E ++ +L G+ G +
Sbjct: 78 WAHEDHNKPEEEVVEQIVKVAEMFGADAITTNNELFIAPMAKACERL---GLR--GAGVQ 132
Query: 181 AAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIV 240
AA KN M++ +K G+ + K K T + ++E G P+++K LA+ GV +
Sbjct: 133 AAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIGTPLILKPTYLASSIGVTL 192
Query: 241 AMTLEEAYEAVD------SMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLES 294
E A + + + + I EEFL+GE ++ + I +E
Sbjct: 193 ITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEG 252
Query: 295 AQDHKRV---GDGDTGPNTG--GMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKF 349
D P G +P+ L +E + ++E+ K G +
Sbjct: 253 IMADGEYFPIAIHDKTPQIGFTETSHITPSI-LDEEAKKKIVEA----AKKANEGLGLQN 307
Query: 350 VGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLES--DLAEVLL-AACRGELTGV 406
+ + + K+ P LIE RF + ++ D+A++LL C G+ +
Sbjct: 308 -CATHTEIKL-MKNREPGLIESAARFAGWNM-IPNIKKVFGLDMAQLLLDVLCFGKDADL 364
Query: 407 TLNWSPGSAMVVV--------------MASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
V + E L + + S
Sbjct: 365 PDGLLDQEPYYVADCHLYPQHFKQNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAA 424
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEI 494
GT++D + KG + ++ + +
Sbjct: 425 PGTSVDLT--LFEAFNSIAAFELKGSNSQDVAESIRQIQQHA 464
|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Length = 334 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 3e-12
Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 22/237 (9%)
Query: 151 VVVGPEAPLVS-GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT 209
VV P V+ + +P FG + E +N + K GI + +
Sbjct: 64 AVVVPTGSFVAHLGIELVENMKVPYFG-NKRVLRWESDRNLERKWLKKAGIRVPE--VYE 120
Query: 210 DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVII 269
DP+ + P++VK G GKG +A E+ + + L + I
Sbjct: 121 DPD-------DIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKF-LGIKRKEDLKNIQI 172
Query: 270 EEFLEGEEAS---FFALVDGENAIP-LESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKE 325
+E++ G F++ V E + ++ + G +
Sbjct: 173 QEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGN 232
Query: 326 LQSVVMESIILPTVK---GMSAEGCKFVGVLYAGLMIE---KKSGLPKLIEYNVRFG 376
+ V+ ES+++ ++ + + +G L+ +E + E + R
Sbjct: 233 IPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIV 289
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Length = 433 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 7e-12
Identities = 38/201 (18%), Positives = 82/201 (40%), Gaps = 25/201 (12%)
Query: 84 VVLVIGGG--GREHALCYALKR----SHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGD 137
+L++G G G+E + +R + D AP +++ + +++D D
Sbjct: 21 KILLLGSGELGKE--IAIEAQRLGVEVVAVDRYANAPA-MQVAH--RSYVG---NMMDKD 72
Query: 138 AVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAAL----EGSKNFMKN 193
+ S + ++ EA + L + K G P++ A + E + +
Sbjct: 73 FLWSVVEREKPDAIIPEIEAINLDALF-EFEKDGYFVV-PNARATWIAMHRERLR---ET 127
Query: 194 LCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDS 253
L + +PT++Y T + + ++ G P KA ++GKG E+ +A +
Sbjct: 128 LVKEAKVPTSRYMYATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWE- 186
Query: 254 MLLKNAFGSAGCRVIIEEFLE 274
K + ++I+EE ++
Sbjct: 187 -EAKTKARGSAEKIIVEEHID 206
|
| >3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Length = 750 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 13/134 (9%)
Query: 159 LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYI 218
L + VK G T + +K K + D+ PT FTD A Y
Sbjct: 456 LWHNSHIEYVKNGNMTSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDRKEALNYF 515
Query: 219 QE-EGAPIVVK-ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSA---GCRVIIEEFL 273
+ + PIVVK G G+ + T + A A +++EE++
Sbjct: 516 SQIQDKPIVVKPKST-NFGLGISIFKTSANLAS------YEKAIDIAFTEDSAILVEEYI 568
Query: 274 EGEEASFFALVDGE 287
EG E FF +++G+
Sbjct: 569 EGTEYRFF-VLEGD 581
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Length = 391 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 42/201 (20%), Positives = 86/201 (42%), Gaps = 27/201 (13%)
Query: 85 VLVIGGG--GREHALCYALKR----SHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDA 138
V+++G G G+E + +R + D AP +++ + I ++LDGDA
Sbjct: 14 VMLLGSGELGKE--VAIECQRLGVEVIAVDRYADAPA-MHVAH--RSHVI---NMLDGDA 65
Query: 139 VISFCRKWSVGLVVVGPEAPLVS-GLANKLVKAGIPTFGPSSEAAAL----EGSKNFMKN 193
+ +V PE ++ + +L + G+ P + A L EG + +
Sbjct: 66 LRRVVELEKPHYIV--PEIEAIATDMLIQLEEEGLNVV-PCARATKLTMNREGIR---RL 119
Query: 194 LCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDS 253
++ +PT+ Y+ + ++ + + G P +VK ++GKG + E+ +A
Sbjct: 120 AAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKY 179
Query: 254 MLLKNAFGSAGCRVIIEEFLE 274
G+ RVI+E ++
Sbjct: 180 AQQGGRAGAG--RVIVEGVVK 198
|
| >3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Length = 757 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 3e-10
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 178 SSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN-AAKQYIQEEGAPIVVKADGLAAGK 236
S + + +K K + K G + FT A Y E +V+K G
Sbjct: 480 SYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTNYGL 539
Query: 237 GVIVAM----TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE 287
G+ + E+ +A L+ AF V++E++L G E FF ++ E
Sbjct: 540 GITIFQQGVQNREDFAKA-----LEIAF-REDKEVMVEDYLVGTEYRFF-VLGDE 587
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Length = 305 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 4e-09
Identities = 45/303 (14%), Positives = 91/303 (30%), Gaps = 55/303 (18%)
Query: 124 DATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAA 183
+ +C+ L V D++ + K L++ PE + K + G SS A A
Sbjct: 48 EFSCLFTLPVDSMDSMEKYLEKSDAFLII-APEDDFLLYTLTKKAEKYCENLGSSSRAIA 106
Query: 184 LEGSKN-FMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242
+ K K L + +P + ++ ++K AG+G+ +
Sbjct: 107 VTSDKWELYKKLRGEVQVP-------------QTSLRPLDCKFIIKPRTACAGEGIGFSD 153
Query: 243 TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVG 302
+ + + I +EF+EG S V + + Q
Sbjct: 154 EVPDGH-------------------IAQEFIEGINLSVSLAVGEDVKCLSVNEQIINNFR 194
Query: 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESI-ILPTVKGMSAEGCKFVGVLYAGLMIEK 361
G + + + +E+ + ++ + + G G V
Sbjct: 195 YA------GAVVPARISDEVKREVVEEAVRAVECVEGLNGYV--GVDIV----------- 235
Query: 362 KSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMA 421
S P +IE N R + +A++L + + S + V
Sbjct: 236 YSDQPYVIEINARLT-TPVVAFSRAYGASVADLLAGGEVKHVRRQMVRKSKSAEKPYVSV 294
Query: 422 SKG 424
Sbjct: 295 GDY 297
|
| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Length = 361 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 13/133 (9%)
Query: 151 VVVGPEAPLVS--GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF 208
+V P ++ GL N +P FG + E ++ L + G+ K +
Sbjct: 87 SIVVPHGSFIAYCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVPK--KY 143
Query: 209 TDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCR-V 267
P ++ ++VK G G+G +A + EE Y+ + + +
Sbjct: 144 ESP-------EDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANA 196
Query: 268 IIEEFLEGEEASF 280
IEE++ G
Sbjct: 197 HIEEYVVGTNFCI 209
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Length = 367 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVK 228
I GP EA+ L +K K GI T Y + N A P +VK
Sbjct: 132 YRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVK 191
Query: 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG 275
+ GV V +E A+D +AF V+IE F++G
Sbjct: 192 PSNAGSSLGVNVVKEEKELIYALD-----SAF-EYSKEVLIEPFIQG 232
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA-----DG 231
P ++A + + K G+PT + P ++ ++ G P ++K D
Sbjct: 86 PPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRVGLPALLKTRRGGYD- 144
Query: 232 LAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL 273
GKG + T EEA EA+ A G G I+E F+
Sbjct: 145 ---GKGQALVRTEEEALEALK------ALGGRGL--ILEGFV 175
|
| >3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGK----GVIVAMTLEEA 247
K + +YG+P K P AK+ +E G +V+KA G+ GV +A T +EA
Sbjct: 9 KEILARYGVPVPPGKVAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEA 68
Query: 248 YEAVDSMLLKNAFGSAGCRVIIEE 271
YE ++L N G +V++ E
Sbjct: 69 YEKAQAILGMNIKGLTVKKVLVAE 92
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Length = 372 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT----DPNAAKQYIQEEGA-P 224
+P G + +++A+ K+ K + GIP + T + ++ + G
Sbjct: 123 LNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSE 182
Query: 225 IVVKADGLAAG---KGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
+ VKA + + T E +A +K F R+++E + G E
Sbjct: 183 LFVKA---VSLGSSVATLPVKTETEFTKA-----VKEVF-RYDDRLMVEPRIRGRE 229
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Length = 307 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 3e-07
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 171 GIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT-DPNAAKQYIQEEGAPIVVKA 229
GIP G + ++ + KN K + GI T + T + + + G P+VVK
Sbjct: 81 GIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNFDELDKLGFPLVVKP 140
Query: 230 DGLAAG--KGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
+ G GV + +E L+ F V+IE++++GEE
Sbjct: 141 --NSGGSSVGVKIVYDKDELISM-----LETVF-EWDSEVVIEKYIKGEE 182
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 163 LANKLVKAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTFTDPNAAKQYIQ 219
+ KAGI F GP ++ G+K +NL G+P A D +
Sbjct: 110 FVDACNKAGI-IFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAA 168
Query: 220 EEGAPIVVKADGLAAGKGVIVAMT---LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
G P+++KA G+G+ V + L + AFG V +E+ +E
Sbjct: 169 AIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKRE-AMAAFGKDE--VYLEKLVE 223
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Length = 389 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA-----DG 231
S+ + ++ KN +K G+P A Y+ + + I E P V+K D
Sbjct: 102 QGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAELSYPSVLKTTTGGYD- 160
Query: 232 LAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL 273
GKG +V + + EA +A C I+E+++
Sbjct: 161 ---GKGQVVLRSEADVDEARK------LANAAEC--ILEKWV 191
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 8e-07
Identities = 39/305 (12%), Positives = 75/305 (24%), Gaps = 100/305 (32%)
Query: 176 GPSSEAAALEGSKNFMKN---LCDKYGIPTAK-YKTFTDPNAAKQYIQEEGAPIVVKADG 231
PS ++ + N + KY + + Y A + + +++ DG
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--QALLELRPAKN--VLI--DG 157
Query: 232 LA-AGKGVIVAMTLEEAYEAVDSMLLKNAFG----SAGCRVIIEEFLEGEEA-------S 279
+ +GK + + K F + E LE + +
Sbjct: 158 VLGSGKTWVALDVCLS-----YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 280 FFALVDGENAIPL--ESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILP 337
+ + D + I L S Q R + L ++L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRR--------------LLKSKPYENCL-------LVLL 251
Query: 338 TVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLA 397
V+ K F + C++L+ + + L A
Sbjct: 252 NVQN------------------------AKAWNA---F-NLSCKILLTTRFKQVTDFLSA 283
Query: 398 ACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEK-------GSEIQNL-EEAEQVAP-SV 448
A ++ + S K Q+L E P +
Sbjct: 284 ATTTHIS-------------LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 449 KIFHA 453
I
Sbjct: 331 SIIAE 335
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 163 LANKLVKAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTFTDPNAAKQYIQ 219
A + + GI F GP E + G K + K +P AK++ +
Sbjct: 94 FARRCAEEGI-KFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAE 152
Query: 220 EEGAPIVVKADGLAAGKGVIVAMT---LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
E G P+++KA GKG+ + LE+A+ S + +FG++ V IE +++
Sbjct: 153 EAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSE-AEKSFGNSE--VYIERYID 207
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Length = 461 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 163 LANKLVKAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTFTDPNAAKQYIQ 219
A + + GI F GP+ + G K ++ GIP + +
Sbjct: 96 FAKRCREEGI-IFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAE 154
Query: 220 EEGAPIVVKADGLAAGKGVIVAMT---LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
G PI++KA G+G+ + + ++EA+E S K AFGS V +E+ +E
Sbjct: 155 AHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSE-AKAAFGSDE--VYVEKLIE 209
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Length = 364 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT------DPNAAKQYIQEE-G 222
+P G +AA K MK L + G+P Y +F + + + ++
Sbjct: 112 LDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLN 171
Query: 223 APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
P+ VK L + G+ E E +K AF +++IE+ + E
Sbjct: 172 YPVFVKPANLGSSVGISKCNNEAELKEG-----IKEAF-QFDRKLVIEQGVNARE 220
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Length = 343 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA 229
+GIP G +++A+ K+ + GI T + + P+ VK
Sbjct: 115 SGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPV--AATFTYPVFVKP 172
Query: 230 DGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
+ GV + +E A +++A +++IE+ + G E
Sbjct: 173 ARSGSSFGVKKVNSADELDYA-----IESAR-QYDSKILIEQAVSGCE 214
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Length = 380 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 166 KLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPI 225
KL G PS + K K K GIP +YK D + ++E G P+
Sbjct: 80 KLYNEGYKIH-PSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLESD---VREFGFPV 135
Query: 226 VVKA-----DGLAAGKGVIVAMTLEEAYEAVDSMLL 256
V KA D G+GV + ++ A+
Sbjct: 136 VQKARKGGYD----GRGVFIIKNEKDLENAIKGETY 167
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Length = 377 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE----GAPI 225
P G A+ K K L GI KY +A + G +
Sbjct: 118 LDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIV 177
Query: 226 VVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG 275
VKA + G+ EE EA L ++F +V+IEE + G
Sbjct: 178 FVKAANQGSSVGISRVTNAEEYTEA-----LSDSF-QYDYKVLIEEAVNG 221
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Length = 419 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 20/105 (19%)
Query: 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN---AAKQYIQEEGAPIVVKA---- 229
P+ A+ + K + G+P A + A + P ++K
Sbjct: 123 PAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAVLPGILKTARLG 182
Query: 230 -DGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL 273
D GKG + T EA +A ++ G ++E+ L
Sbjct: 183 YD----GKGQVRVSTAREARDAHAAL--------GGVPCVLEKRL 215
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Length = 346 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA 229
+GIP G +++AL K+ + GI T + T T + P+ VK
Sbjct: 115 SGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTVTADEKIP--TDQLTYPVFVKP 172
Query: 230 DGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
+ GV E+ A ++ A +V+IEE + G E
Sbjct: 173 ARSGSSFGVSKVAREEDLQGA-----VEAAR-EYDSKVLIEEAVIGTE 214
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Length = 377 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA-----DG 231
+A L + K G + + + + I+ G P +VK D
Sbjct: 100 QGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYD- 158
Query: 232 LAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL 273
GKG ++ ++ E ++ C + E++L
Sbjct: 159 ---GKGQVLINNEKDLQEGFK------LIETSEC--VAEKYL 189
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Length = 403 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAA--KQYIQEEGAPIVVKA----- 229
PS +A +K K KYGIP A+++ + A + ++ G P+++K+
Sbjct: 113 PSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTMAY 172
Query: 230 DGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL 273
D G+G + ++ EA++++ + E++
Sbjct: 173 D----GRGNFRVNSQDDIPEALEAL--------KDRPLYAEKWA 204
|
| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Length = 355 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 19/102 (18%)
Query: 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA-----DG 231
+ + + + K L DK +PTA ++ + + G +VK D
Sbjct: 69 VNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYD- 127
Query: 232 LAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL 273
G+G E + C I+E+ +
Sbjct: 128 ---GRGQWRLRANETEQLPAECY--------GEC--IVEQGI 156
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Length = 364 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 16/115 (13%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE----GAPI 225
A +P G ++A K+ K L G+ A + T T N E G P+
Sbjct: 123 ANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPL 182
Query: 226 VVKADGLAAG---KGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
VK A GV + +A + AF +V++E+ ++G E
Sbjct: 183 FVKP---ANQGSSVGVSKVANEAQYQQA-----VALAF-EFDHKVVVEQGIKGRE 228
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 373 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 8/110 (7%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT--DPNAAKQYIQEEGAPIVV 227
AG+P G A+A+ K F K L G+P Y +Q + G P+ V
Sbjct: 134 AGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFV 193
Query: 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
K + GV + ++ A + A +VI+E + G E
Sbjct: 194 KPARGGSSIGVSRVSSWDQLPAA-----VARAR-RHDPKVIVEAAISGRE 237
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 164 ANKLVKAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPTAK--YKTFTDPNAAKQYIQE 220
A L G+ F GP A G K K + + + T D + A + +
Sbjct: 92 AEALEAEGV-IFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQ 150
Query: 221 EGAPIVVKADGLAA---GKGVIVAMTLEEAYEAVDSMLL--KNAFGSAGCRVIIEEFLE 274
G P+++KA +A GKG+ +A +EA E S N+FG R+ IE+F+
Sbjct: 151 IGYPVMIKA---SAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDD--RIFIEKFVT 204
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Length = 306 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT-------DPNAAKQYIQEEG 222
G+P G A+AL K K L G+P A + T + I G
Sbjct: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138
Query: 223 APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
P++VK + G+ + +A L+ AF V+IE++L G E
Sbjct: 139 LPVIVKPSREGSSVGMSKVVAENALQDA-----LRLAF-QHDEEVLIEKWLSGPE 187
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Length = 449 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 169 KAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPT---AKYKTFTDPNAAKQYIQEEGAP 224
++G F GP +E L G K K G+P + D + + + G P
Sbjct: 97 RSGF-IFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYP 155
Query: 225 IVVKADGLAAGKGVIVAMTLEEAYEAVDS--MLLKNAFGSAGCRVIIEEFLE 274
+++KA G G+G+ V E +++ K AF + V +E++LE
Sbjct: 156 VIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDM--VYMEKYLE 205
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Length = 446 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 169 KAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPTA--KYKTFTDPNAAKQYIQEEGAPI 225
K I F GPS EA L K+ K + + G+P AAK+ +E G P+
Sbjct: 101 KHNI-KFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPV 159
Query: 226 VVKADGLAAGKGVIVAMTLEEAYEAVDS--MLLKNAFGSAGCRVIIEEFLE 274
++KA G+G+ V ++ +A S AFG + +E++++
Sbjct: 160 ILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGT--MYMEKYIQ 208
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 451 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 164 ANKLVKAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPTA--KYKTFTDPNAAKQYIQE 220
A +AGI TF GP + L G K K + K G+P AK +E
Sbjct: 91 AKMCEEAGI-TFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALARE 149
Query: 221 EGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDS--MLLKNAFGSAGCRVIIEEFLE 274
G P+++KA G+G+ + EE + + + AFG +++E+F+E
Sbjct: 150 IGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGD--LLLEKFIE 203
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 164 ANKLVKAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPTAK-YKTFTDPNAAKQYIQEE 221
+++ + I F GPS +A G K+ + + ++ +P D AK+ ++
Sbjct: 121 SDRCSQENI-VFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVAKKL 179
Query: 222 GAPIVVKADGLAAGKGVIVAMTLEEAYEAVDS--MLLKNAFGSAGCRVIIEEFLE 274
P++VK+ G G+ + ++ ++ K+ FG AG V +E F+
Sbjct: 180 EYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAG--VFMERFVN 232
|
| >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 3e-05
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPI-VVKADGLAAGK----GVIVAMTLEE 246
K L +YG+P T P A++ + GA VVK A G+ GV V + E+
Sbjct: 9 KQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKED 68
Query: 247 AYEAVDSMLLKNAF----GSAGC---RVIIEE 271
++ L K + G ++++E
Sbjct: 69 IRAFAENWLGKRLVTYQTDANGQPVNQILVEA 100
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A Length = 317 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTD----PNAAKQYIQEEGAPI 225
GI G +AL K K + + G+PT ++T A + + G P+
Sbjct: 90 YGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVAKLGLPL 149
Query: 226 VVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG 275
VK + V+ T + A L A + VI+E+ +EG
Sbjct: 150 FVKPASEGSSVAVLKVKTADALPAA-----LSEAA-THDKIVIVEKSIEG 193
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Length = 386 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 16/115 (13%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT---DPNAAKQYIQEE-GAPI 225
A +P G +A+ K+ K + + A + F +A + + G P+
Sbjct: 142 ANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPL 201
Query: 226 VVKADGLA-AG--KGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
VK A G GV T + A L A + +V++E + G E
Sbjct: 202 FVKP---ANQGSSVGVSQVRTADAFAAA-----LALAL-AYDHKVLVEAAVAGRE 247
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Length = 451 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 169 KAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPTA--KYKTFTDPNAAKQYIQEEGAPI 225
+ F GPS ++ G K+ K K +P D + AK+ ++ G P+
Sbjct: 96 ACQL-KFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPV 154
Query: 226 VVKADGLAAGKGVIVAMTLEEAYEAVDS--MLLKNAFGSAGCRVIIEEFLE 274
++KA GKG+ VA +E + AFG+ G + +E+F+E
Sbjct: 155 IIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGG--LYMEKFIE 203
|
| >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 18/101 (17%)
Query: 192 KNLCDKYGIPTAK------YKTFTDPNAAKQYIQEE----GAPIVVKADGLAA--GK--G 237
K L K+ T+ Y T + +Q+ +VVK D L GK
Sbjct: 12 KELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGL 71
Query: 238 VIVAMTLEEAYEAVDSMLLKN-AFGSAG---CRVIIEEFLE 274
V V +TL+ + L + G A +IE F+
Sbjct: 72 VGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVP 112
|
| >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 7e-05
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 19/99 (19%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGLAAGK-----------GVI 239
K L G+ ++ N A + + A IV+KA LA G+ GV
Sbjct: 9 KKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVH 68
Query: 240 VAMTLEEAYEAVDSMLLKNAF----GSAGC---RVIIEE 271
+ E + M+ N G +V++ E
Sbjct: 69 LTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAE 107
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Length = 322 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA 229
G P G A+AL K+ K + + G+P + P VK
Sbjct: 101 LGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEPPVVPF---DPPFFVKP 157
Query: 230 DGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG 275
+ G+ ++ A+ AF + ++E+ L
Sbjct: 158 ANTGSSVGISRVERFQDLEAALA-----LAF-RYDEKAVVEKALSP 197
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 51/274 (18%), Positives = 82/274 (29%), Gaps = 43/274 (15%)
Query: 100 ALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159
A V+ + +L+ + C S GL
Sbjct: 20 AEALGLPYKKVYVPALPMVLGERP-----KELE--GVTVALERCVSQSRGLAA------- 65
Query: 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQ 219
A L GIP E G K K G+P K TD A + ++
Sbjct: 66 ----ARYLTALGIPVV-NRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLME 120
Query: 220 EEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEAS 279
G P+V+K + G+ + + F I+E++E
Sbjct: 121 AFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQH--QLFYIQEYVEKPGRD 178
Query: 280 FFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTV 339
V GE AI A ++R T G G P LT+E+ + +++
Sbjct: 179 IRVFVVGERAI----AAIYRRSAHWITNTARG--GQAENCP-LTEEVARLSVKA------ 225
Query: 340 KGMSAEGCKFVGVLYAGL-MIEKKSGLPKLIEYN 372
+ VG + + E + G + E N
Sbjct: 226 -------AEAVGGGVVAVDLFESERG-LLVNEVN 251
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Length = 383 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 11/113 (9%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKY-GIPTAKYKTFTDPNAAKQYIQEE----GAP 224
+P G + ++++ K + + IP Y + + + E P
Sbjct: 144 LKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYP 203
Query: 225 IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
+ VK + + G+ A + +A + A RV+IE+ ++ E
Sbjct: 204 VFVKPANMGSSVGISKAENRTDLKQA-----IALALKYDS-RVLIEQGVDARE 250
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| 3mjf_A | 431 | Phosphoribosylamine--glycine ligase; structural ge | 100.0 | |
| 3lp8_A | 442 | Phosphoribosylamine-glycine ligase; ssgcid, NIH, n | 100.0 | |
| 2yrx_A | 451 | Phosphoribosylglycinamide synthetase; glycinamide | 100.0 | |
| 2ip4_A | 417 | PURD, phosphoribosylamine--glycine ligase; GAR syn | 100.0 | |
| 2yw2_A | 424 | Phosphoribosylamine--glycine ligase; glycinamide r | 100.0 | |
| 2xcl_A | 422 | Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- | 100.0 | |
| 2qk4_A | 452 | Trifunctional purine biosynthetic protein adenosi; | 100.0 | |
| 1vkz_A | 412 | Phosphoribosylamine--glycine ligase; TM1250, struc | 100.0 | |
| 3tqt_A | 372 | D-alanine--D-alanine ligase; cell envelope; 1.88A | 100.0 | |
| 4fu0_A | 357 | D-alanine--D-alanine ligase 7; vancomycin resistan | 100.0 | |
| 3vot_A | 425 | L-amino acid ligase, BL00235; ATP-grAsp motif, ATP | 100.0 | |
| 3k3p_A | 383 | D-alanine--D-alanine ligase; D-alanyl-alanine synt | 100.0 | |
| 3i12_A | 364 | D-alanine-D-alanine ligase A; D-alanyl-alanine syn | 100.0 | |
| 3e5n_A | 386 | D-alanine-D-alanine ligase A; bacterial blight; 2. | 100.0 | |
| 3lwb_A | 373 | D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan | 100.0 | |
| 3se7_A | 346 | VANA; alpha-beta structure, D-alanine-D-lactate li | 100.0 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 100.0 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 100.0 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 100.0 | |
| 1ehi_A | 377 | LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g | 100.0 | |
| 1ulz_A | 451 | Pyruvate carboxylase N-terminal domain; biotin car | 100.0 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 100.0 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 100.0 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 100.0 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 2i87_A | 364 | D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco | 100.0 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 100.0 | |
| 2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain | 100.0 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 100.0 | |
| 2dzd_A | 461 | Pyruvate carboxylase; biotin carboxylase, ligase; | 100.0 | |
| 2pvp_A | 367 | D-alanine-D-alanine ligase; 2.40A {Helicobacter py | 100.0 | |
| 2fb9_A | 322 | D-alanine:D-alanine ligase; 1.90A {Thermus caldoph | 100.0 | |
| 1e4e_A | 343 | Vancomycin/teicoplanin A-type resistance protein; | 100.0 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 100.0 | |
| 1w96_A | 554 | ACC, acetyl-coenzyme A carboxylase; ligase, obesit | 100.0 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 100.0 | |
| 3jrx_A | 587 | Acetyl-COA carboxylase 2; BC domain, soraphen A, a | 100.0 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 100.0 | |
| 3glk_A | 540 | Acetyl-COA carboxylase 2; ATP binding, alternative | 100.0 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 100.0 | |
| 2z04_A | 365 | Phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 100.0 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 100.0 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 100.0 | |
| 3eth_A | 355 | Phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 100.0 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 100.0 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 100.0 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 100.0 | |
| 2pn1_A | 331 | Carbamoylphosphate synthase large subunit; ZP_0053 | 100.0 | |
| 3vmm_A | 474 | Alanine-anticapsin ligase BACD; ATP-grAsp domain, | 100.0 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 99.96 | |
| 2r85_A | 334 | PURP protein PF1517; ATP-grAsp superfamily, unknow | 99.96 | |
| 2r7k_A | 361 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib | 99.95 | |
| 3df7_A | 305 | Putative ATP-grAsp superfamily protein; putative p | 99.95 | |
| 1gsa_A | 316 | Glutathione synthetase; ligase; HET: ADP GSH; 2.00 | 99.93 | |
| 2pbz_A | 320 | Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt | 99.9 | |
| 3ln7_A | 757 | Glutathione biosynthesis bifunctional protein GSH; | 99.88 | |
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase; inositol | 99.87 | |
| 3ln6_A | 750 | Glutathione biosynthesis bifunctional protein GSH; | 99.84 | |
| 2q7d_A | 346 | Inositol-tetrakisphosphate 1-kinase; inositol kina | 99.82 | |
| 1i7n_A | 309 | Synapsin II; synapse, phosphorylation, neuropeptid | 99.79 | |
| 2p0a_A | 344 | Synapsin-3, synapsin III; neurotransmitter release | 99.78 | |
| 1pk8_A | 422 | RAT synapsin I; ATP binding, ATP grAsp, calcium (I | 99.78 | |
| 1wr2_A | 238 | Hypothetical protein PH1789; structural genomics, | 99.7 | |
| 2cqy_A | 108 | Propionyl-COA carboxylase alpha chain, mitochondri | 99.65 | |
| 3t7a_A | 330 | Inositol pyrophosphate kinase; ATP-grAsp fold, tra | 99.57 | |
| 2fp4_B | 395 | Succinyl-COA ligase [GDP-forming] beta-chain, mito | 99.29 | |
| 2nu8_B | 388 | SCS-beta, succinyl-COA synthetase beta chain; citr | 99.18 | |
| 3ufx_B | 397 | Succinyl-COA synthetase beta subunit; ATP-grAsp fo | 99.16 | |
| 3tig_A | 380 | TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si | 98.06 | |
| 3mwd_A | 425 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 97.23 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 96.9 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 93.13 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 92.78 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 92.58 | |
| 3n6x_A | 474 | Putative glutathionylspermidine synthase; domain o | 92.55 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 90.67 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 90.04 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 89.65 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 88.77 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 88.68 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 88.54 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 88.2 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 87.97 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 87.8 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 87.67 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 87.08 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 87.04 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 87.0 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 86.92 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 86.79 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 85.97 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 84.57 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 84.4 | |
| 2io8_A | 619 | Bifunctional glutathionylspermidine synthetase/ami | 83.92 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 83.43 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 83.28 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 83.08 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 82.84 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 82.68 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 82.59 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 82.46 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 82.45 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 82.2 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 81.9 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 81.78 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 81.68 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 81.58 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 81.34 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 81.16 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 81.12 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 80.83 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 80.8 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 80.74 |
| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-67 Score=551.58 Aligned_cols=427 Identities=52% Similarity=0.883 Sum_probs=386.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVS 161 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~ 161 (519)
+|||||||+|+++|+++|+++++.++..+++.|+|+++...+....+ .++..|.+.++++++++++|+|+++.|+.++.
T Consensus 3 ~mkvlviG~ggre~ala~~l~~s~~v~~v~~~pgn~g~~~~~~~~~~-~~~~~d~~~l~~~a~~~~id~vv~g~e~~l~~ 81 (431)
T 3mjf_A 3 AMNILIIGNGGREHALGWKAAQSPLADKIYVAPGNAGTALEPTLENV-DIAATDIAGLLAFAQSHDIGLTIVGPEAPLVI 81 (431)
T ss_dssp CEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCHHHHHCTTCEEC-CCCTTCHHHHHHHHHHTTEEEEEECSHHHHHT
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCCHHHhhhccccee-cCCcCCHHHHHHHHHHhCcCEEEECCchHHHH
Confidence 58999999999999999999998777888888988876544332334 67889999999999999999999999998877
Q ss_pred HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEe
Q 010065 162 GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVA 241 (519)
Q Consensus 162 ~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v 241 (519)
.+++.|+.+|+|++|++.+++.+++||..+|++|+++|||+|++..+++.+++.+++++++||+|+||..+++|+||.++
T Consensus 82 ~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv 161 (431)
T 3mjf_A 82 GVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVA 161 (431)
T ss_dssp THHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHHHCSSEEEEESSSCTTCSEEEE
T ss_pred HHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHHcCCeEEEEECCCCCCCcEEEe
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCC
Q 010065 242 MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPV 321 (519)
Q Consensus 242 ~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~ 321 (519)
++.+|+.++++.++....|+..+..++|||||+|+|+++.+++||+.++++...+.+++.++++.++++|+++++.|++.
T Consensus 162 ~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~ 241 (431)
T 3mjf_A 162 MTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPV 241 (431)
T ss_dssp CSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCSEEEEEEEEEESSCEEECCCBEECCEEETTTEEEECSCSEEEESCTT
T ss_pred CCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCCcEEEEEEEEcCCEEEEEEeeEeceecccCCCCCCCCCceEEeeCCC
Confidence 99999999999887433343345789999999999999999999887777777778888999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhC
Q 010065 322 LTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRG 401 (519)
Q Consensus 322 l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g 401 (519)
++++..+++.+.+++.+.+++.++|++|+|++|+||+++++| ++|++|+|+|||++....+++.+|.|+.+++++++.|
T Consensus 242 l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~~g-~~~viEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~~G 320 (431)
T 3mjf_A 242 VTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADG-QPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQG 320 (431)
T ss_dssp SCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTS-CEEEEEECGGGSTTTHHHHHHHBCSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCC-CeEEEEEecCCCCcHHHHHHHHHCCCHHHHHHHHHcC
Confidence 899999999998888888999999999899999999999877 8999999999998888778888999999999999999
Q ss_pred CCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCC-cEEecCCeEEEEEEecCCH
Q 010065 402 ELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADG-NFIATGGRVLGVTAKGKDV 480 (519)
Q Consensus 402 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~rvg~vi~~g~t~ 480 (519)
++++.++.|.+.++++++++++|||..+.++..|.+++++.. +++.+||++... ..| .+.++++|+++|++.|+|.
T Consensus 321 ~l~~~~~~~~~~~a~~vv~a~~gyp~~~~~g~~i~~~~~~~~--~~~~~~~ag~~~-~~~~~~~~~ggRv~~v~~~g~~~ 397 (431)
T 3mjf_A 321 KLNEKTSDWDERPSLGVVLAAGGYPADYRQGDVIHGLPQQEV--KDGKVFHAGTKL-NGNHEVVTNGGRVLCVTALGETV 397 (431)
T ss_dssp CGGGCCCCBCSSCEEEEEEEETTTTSCCCCCCBCBCCCSSCB--TTEEEEESSEEE-CTTSCEEECSSEEEEEEEECSSH
T ss_pred CCCCCCccccCCcEEEEEecCCCcCccCCCCCEeeCCccccC--CCcEEEEeeeEe-cCCCEEEecCCeEEEEEEecCCH
Confidence 988878888888999999999999999999999999987532 588999998876 466 9999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCeeecccccccccccc
Q 010065 481 EEAQDRAYLAVEEINWPGGFYRRDIGWRALPQK 513 (519)
Q Consensus 481 ~ea~~~a~~~~~~i~~~g~~~r~dig~~~~~~~ 513 (519)
++|+++|+++++.|+|+|.|||+|||.+.+..+
T Consensus 398 ~~A~~~a~~~~~~i~~~~~~~r~dig~~~~~~~ 430 (431)
T 3mjf_A 398 AQAQQYAYQLAEGIQWEGVFCRKDIGYRAIARG 430 (431)
T ss_dssp HHHHHHHHHHHTTCBCTTEECCSCTTHHHHTTT
T ss_pred HHHHHHHHHHhccCCCCCceeehhhHHHHHhcc
Confidence 999999999999999999999999999887543
|
| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-66 Score=541.55 Aligned_cols=423 Identities=48% Similarity=0.860 Sum_probs=383.6
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
.+|||||||+|+++++++|+++++.++..+++.|+|++....+ ..+ .++..|.+.++++++++++|+|+++.|+.++
T Consensus 20 ~~m~ilvlG~ggre~ala~~l~~s~~v~~v~~~pgn~g~~~~~--~~~-~i~~~d~~~l~~~a~~~~id~vv~g~E~~l~ 96 (442)
T 3lp8_A 20 GSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMSGLA--DII-DIDINSTIEVIQVCKKEKIELVVIGPETPLM 96 (442)
T ss_dssp CCEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGTTTS--EEC-CCCTTCHHHHHHHHHHTTCCEEEECSHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCCEEEEECCChHHhhcc--cee-ecCcCCHHHHHHHHHHhCCCEEEECCcHHHH
Confidence 3689999999999999999999998888888999988766442 233 6788999999999999999999999999987
Q ss_pred HHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEE
Q 010065 161 SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIV 240 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~ 240 (519)
.++++.++++|+|++|++.+++.+++||..+|++|+++|||+|++..+++.+++.+++++++||+|+||..+++|+||.+
T Consensus 97 ~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~i 176 (442)
T 3lp8_A 97 NGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHKLPLVVKADGLAQGKGTVI 176 (442)
T ss_dssp TTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHSCSSEEEEESSCCTTTSEEE
T ss_pred HHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHcCCcEEEeECCCCCCCeEEE
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCC
Q 010065 241 AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAP 320 (519)
Q Consensus 241 v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~ 320 (519)
+++.+|+.++++.++....|+..+..++|||||+|+|+++.+++||+.++++...+.+++.++++.++++|+++++.|++
T Consensus 177 v~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~ 256 (442)
T 3lp8_A 177 CHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEGKEISFFTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPN 256 (442)
T ss_dssp ESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCSEEEEEEEEEESSCEEEEEEEEECCEEEGGGEEEECSCSEEEECTT
T ss_pred eCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecCcEEEEEEEECCCeEEEeEEeEeeeecccCCCCCCCCCcEEEeeCC
Confidence 99999999999998754344333468999999999999999999988777777777778888888899999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 321 VLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 321 ~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
.++++..+++.+.+++.+.+++.++|++|+|++++||+++++| +||+|+|+|||++.++.+++.++.|+.+++++++.
T Consensus 257 ~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~~g--~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~ 334 (442)
T 3lp8_A 257 IITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNE--PKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAK 334 (442)
T ss_dssp SSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE--EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC--eEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHc
Confidence 7899999999998777788999999999889999999999988 99999999999999888888889999999999999
Q ss_pred CCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCH
Q 010065 401 GELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDV 480 (519)
Q Consensus 401 g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~ 480 (519)
|++++.++.|.+.+++++++++.+||..+.++..|.+++++.+ .+++.+||.++.. ..|++.++++|+++|++.|+|.
T Consensus 335 G~l~~~~~~~~~~~a~~vv~a~~gyp~~~~~g~~i~g~~~~~~-~~~~~~~~ag~~~-~~~~~~~~ggRv~~v~~~g~~~ 412 (442)
T 3lp8_A 335 GKLGNESVELSKKAALCVVVASRGYPGEYKKNSIINGIENIEK-LPNVQLLHAGTRR-EGNNWVSDSGRVINVVAQGENL 412 (442)
T ss_dssp TCCSSCCCCBCSCEEEEEEEEETTTTSSCCSSCEEBSHHHHHT-CSSEEEEESSEEE-ETTEEEECSSEEEEEEEEESSH
T ss_pred CCCCCCCceeccCcEEEEEEccCCCCCCCCCCCEeeCCccccc-CCCcEEEEeeeec-cCCeEEecCCeEEEEEEecCCH
Confidence 9988888889888899999999999999989999999987643 4678899998876 4789999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCeeeccccccccc
Q 010065 481 EEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510 (519)
Q Consensus 481 ~ea~~~a~~~~~~i~~~g~~~r~dig~~~~ 510 (519)
++|+++|+++++.|+|+|.+||+|||.+.+
T Consensus 413 ~~A~~~a~~~~~~i~~~~~~~r~dig~~~~ 442 (442)
T 3lp8_A 413 ASAKHQAYAALDLLDWPDGIYRYDIGSCAL 442 (442)
T ss_dssp HHHHHHHHHHHTTCBCTTEECCSCTTCC--
T ss_pred HHHHHHHHHHhcccCCCCCcccCccCcccC
Confidence 999999999999999999999999998764
|
| >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-59 Score=489.44 Aligned_cols=426 Identities=49% Similarity=0.858 Sum_probs=357.9
Q ss_pred cCCCCCC--CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEE
Q 010065 74 NAPTNAG--QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLV 151 (519)
Q Consensus 74 ~s~~~~~--~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~V 151 (519)
.|+.+++ .+++|||+|+|+++++++++++++.|++++++++.|++....+ +.+ ..|+.|.+.++++++++++|+|
T Consensus 11 ~~~~~~~~~~~~~iliiG~g~r~~a~a~~~~~~~g~~~v~~~~~~~~~~~~~--~~~-~~~~~d~~~l~~~~~~~~~d~v 87 (451)
T 2yrx_A 11 SSGENLYFQSHMNVLVIGRGGREHAIAWKAAQSPLVGKLYVAPGNPGIADVA--ELV-HIDELDIEALVQFAKQQAIDLT 87 (451)
T ss_dssp ----CCCCCSSEEEEEEECSHHHHHHHHHHHTCTTEEEEEEEECCTTGGGTS--EEC-CCCTTCHHHHHHHHHHTTCSEE
T ss_pred ccccccccCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCChhhhhhC--cee-ccCCCCHHHHHHHHHHcCCCEE
Confidence 3666664 4689999999999999999998888999888888777654432 234 5788899999999999999999
Q ss_pred EECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCC
Q 010065 152 VVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADG 231 (519)
Q Consensus 152 i~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~ 231 (519)
+++.|+.++..+++.++.+|+|++|++++++.+++||..++++|+++|||+|++..+++.+++.+++++++||+|+||..
T Consensus 88 i~~~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~PvVvKp~~ 167 (451)
T 2yrx_A 88 IVGPEAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQKGAPIVIKADG 167 (451)
T ss_dssp EECSHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSEEEEECC
T ss_pred EECCchHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcCCcEEEEeCC
Confidence 99999887667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCC
Q 010065 232 LAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTG 311 (519)
Q Consensus 232 g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g 311 (519)
+++|+||.++++.+|+.++++.++....|+.....++|||||+|+|+++.+++||+.+.++...+.+++.++++.+++++
T Consensus 168 ~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G~E~sv~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g 247 (451)
T 2yrx_A 168 LAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEGEEFSFMAFVNGEKVYPLAIAQDHKRAYDGDEGPNTG 247 (451)
T ss_dssp ----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCSEEEEEEEEEETTEEEECCCBEECCEEETTTEEEECS
T ss_pred CCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcCcEEEEEEEEcCCEEEEeeeEEeccccccCCCCCCCC
Confidence 99999999999999999999888754334333478999999999999999999888656555555566777777788999
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCH
Q 010065 312 GMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDL 391 (519)
Q Consensus 312 ~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~ 391 (519)
+++++.|++.+++++.+++.+.+.+.+.+++.++|++|.|++++||+++++| +||+|+|||+|++.++.+.+.+|+|+
T Consensus 248 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g--~~viEiN~R~g~~~~~~i~~~~g~d~ 325 (451)
T 2yrx_A 248 GMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANG--PKVIEFNARFGDPEAQVVLPRLKTDL 325 (451)
T ss_dssp CSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE--EEEEEEESSCCTTHHHHHGGGBCSCH
T ss_pred CCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC--cEEEEEecCCCCcHHHHHHHHcCCCH
Confidence 9999999876899888888554555566777888988889999999999987 99999999999988766667789999
Q ss_pred HHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEE
Q 010065 392 AEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVL 471 (519)
Q Consensus 392 ~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg 471 (519)
.+++++++.|.+++. .+.++.++.++++.++||..+.++..+.+++++ . +++.+++.|... ..+...++++|++
T Consensus 326 ~~~~~~~~~g~~~~~--~~~~~~~~~~~l~~~g~p~~~~~g~~i~~~~~~-~--~~~~v~~~G~~~-~~~~~~~~~~rvg 399 (451)
T 2yrx_A 326 VEAVLAVMDGKELEL--EWTDEAVLGVVLAAKGYPGAYERGAEIRGLDRI-S--PDALLFHAGTKR-EGGAWYTNGGRVL 399 (451)
T ss_dssp HHHHHHHHTTCCCCC--CBCSSEEEEEEEEETTTTSSCCCCCEEBCGGGS-C--TTSEEEESSEEE-ETTEEEECSSEEE
T ss_pred HHHHHHHhcCCCCCc--cccCCceEEEEEecCCcCCCCCCCCcCcCcccc-C--CCCEEEeCcccc-cCCeEEcCCCeEE
Confidence 999999999987643 455556778888888898877777778888775 2 567778877765 3566788999999
Q ss_pred EEEEecCCHHHHHHHHHHHhhccccCCeeeccccccccc
Q 010065 472 GVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510 (519)
Q Consensus 472 ~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~~~~ 510 (519)
+|++.|+|.++|+++++++++.|+++|.|||+|||.+++
T Consensus 400 ~v~~~g~~~~ea~~~~~~~~~~i~~~~~~~r~dig~~~~ 438 (451)
T 2yrx_A 400 LLAAKGETLAKAKEKAYEQLAAIDCDGLFYRRDIGRRAI 438 (451)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCBCTTEECCSCTTTTTC
T ss_pred EEEEEeCCHHHHHHHHHHHhhccccCCeEechhhhhHHH
Confidence 999999999999999999999999999999999999886
|
| >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-58 Score=481.92 Aligned_cols=412 Identities=47% Similarity=0.811 Sum_probs=354.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
|||||+|+|+++++++++++++.|++++++++.+++....+ +.+ . +..|.+.++++++++++|+|+++.|+.+...
T Consensus 1 mkililG~g~r~~a~a~~l~~~~g~~~v~~~~~~~~~~~~~--~~~-~-~~~d~~~l~~~~~~~~~d~v~~~~E~~~~~~ 76 (417)
T 2ip4_A 1 MKVLVVGSGGREHALLWKAAQSPRVKRLYAAPGNAGMEALA--ELV-P-WNGDVEALADWALAEGIDLTLVGPEAPLVEG 76 (417)
T ss_dssp CEEEEEESSHHHHHHHHHHHTCSSCCEEEEEECCTTGGGTS--EEC-C-CCSCHHHHHHHHHHHTCCEEEECSSHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCCcchhhhc--ccC-C-CccCHHHHHHHHHHcCCCEEEECCchHHHHH
Confidence 58999999999999999998888999999988877654432 234 5 8889999999999999999999999987667
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeC
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~ 242 (519)
+++.++.+|+|++|++++++.+++||..++++|+++|||+|++..+++.+++.+++++++||+|+||..+++|+||.+++
T Consensus 77 ~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~ 156 (417)
T 2ip4_A 77 IADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAF 156 (417)
T ss_dssp HHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHHCSSEEEECTTSCSSTTCEEES
T ss_pred HHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeC
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCC
Q 010065 243 TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVL 322 (519)
Q Consensus 243 ~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l 322 (519)
+.+|+.++++.++.. ..+..++|||||+|+|+++.+++||+.+.++...+.+++.++++.++++++++++.|++ +
T Consensus 157 ~~~el~~~~~~~~~~----~~~~~~lvEe~i~g~E~sv~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l 231 (417)
T 2ip4_A 157 DLHQAKQAVANILNR----AEGGEVVVEEYLEGEEATVLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYP-M 231 (417)
T ss_dssp CHHHHHHHHHHHTTS----SSCCCEEEEECCCSCEEEEEEEESSSCEEECCCBEECCEEETTTEEEECSCSEEEESCC-C
T ss_pred CHHHHHHHHHHHHhh----ccCCeEEEEECccCcEEEEEEEEeCCEEEEcchheechhhccCCCCCcCCCCeeeeCCC-C
Confidence 999999999887521 12378999999999999999999887556555555566677777788999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 323 TKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 323 ~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+++..+++.+.+.+.+.+++.++|++|+|++++||+++++| +||+|+|||+|++.++.+.+.+|+|+.+++++++.|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g--~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~ 309 (417)
T 2ip4_A 232 DEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREG--PKVLEFNARFGDPEAQALLPLLENDLVELALRVAEGR 309 (417)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSC--EEEEEEESSCCTTHHHHHTTTBCSCHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeCCC--eEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC
Confidence 99988888555545566777788888889999999999987 9999999999988776676778999999999999998
Q ss_pred CCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHH
Q 010065 403 LTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEE 482 (519)
Q Consensus 403 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~e 482 (519)
+++.++.+.+++++.++++..+||..+..+..+.+++++ +++.+++.|... ..+.+.++++|+++|++.|+|.++
T Consensus 310 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~~~~----~~v~~~~~g~~~-~~~~~~~~~~rv~~v~~~g~~~~~ 384 (417)
T 2ip4_A 310 LAGTRLSWKEGAAACVVLAAPGYPESPRKGIPLHVPEPP----EGVLVFHAGTRR-EGGRLVSAGGRVLNVVGLGRDLKE 384 (417)
T ss_dssp GGGCCCCBCSSEEEEEEEECTTTTTSCCCCCBCBCCCCC----TTEEEEESSEEE-SSSSEEECSSEEEEEEEEESSHHH
T ss_pred CCcCCccccCCcEEEEEEeCCCCCCCCCCCCcccccCCC----CCeEEEECceEe-eCCeEEecCCcEEEEEEEcCCHHH
Confidence 765555555567888888888888766666667776542 567788877765 346678899999999999999999
Q ss_pred HHHHHHHHhhccccCCeeeccccccccc
Q 010065 483 AQDRAYLAVEEINWPGGFYRRDIGWRAL 510 (519)
Q Consensus 483 a~~~a~~~~~~i~~~g~~~r~dig~~~~ 510 (519)
|+++++++++.|+++|.|||+|||.+.+
T Consensus 385 a~~~~~~~~~~i~~~~~~~r~dig~~~~ 412 (417)
T 2ip4_A 385 ALERAYAYIPQVGFPGAVYRRDIGRRAL 412 (417)
T ss_dssp HHHHHHHHGGGSBCTTCBCCSCTTHHHH
T ss_pred HHHHHHHHHhcCccCCcEEccchhhHHH
Confidence 9999999999999999999999998876
|
| >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-58 Score=481.42 Aligned_cols=421 Identities=46% Similarity=0.785 Sum_probs=358.1
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
|+|||+|+|++++.++++++++.|++++++++.|++....+ +.+ ..|+.|.+.++++++++++|+|+++.|+.+++.
T Consensus 1 m~ililG~g~r~~~~a~~~~~~~g~~~v~~~~~~~~~~~~~--~~~-~~~~~d~~~l~~~~~~~~~d~v~~~~E~~~~~~ 77 (424)
T 2yw2_A 1 MKVLVVGNGGREHAIAWKVAQSPLVKELYVAKGNAGIWEIA--KRV-DISPTDVEKLAEFAKNEGVDFTIVGPEAPLVEG 77 (424)
T ss_dssp CEEEEEESSHHHHHHHHHHTTCTTCSEEEEEECCTTGGGTS--EEE-CSCTTCHHHHHHHHHHHTCSEEEECSHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCCCEEEEECCCcchhhhc--ccc-cCCcCCHHHHHHHHHHcCCCEEEECCchHHHHH
Confidence 58999999999999999998888999998888777654433 234 578889999999999999999999999876667
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeC
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~ 242 (519)
+++.++.+|+|++|++++++.+++||..++++|+++|||+|++..+++.+++.+++++++||+|+||..+++|+||++++
T Consensus 78 ~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~PvvvKp~~g~gg~Gv~~v~ 157 (424)
T 2yw2_A 78 IVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCE 157 (424)
T ss_dssp HHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSEEEEESSCCTTCSEEEES
T ss_pred HHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcCCcEEEEeCCCCCCCCEEEEC
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCC
Q 010065 243 TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVL 322 (519)
Q Consensus 243 ~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l 322 (519)
+.+|+.++++.++....|+..+..++|||||+|+|+++.+++||+.++++...+.+++.++++.++++++++++.|++.+
T Consensus 158 ~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g~E~sv~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l 237 (424)
T 2yw2_A 158 TVEKAIETLDRFLNKKIFGKSSERVVIEEFLEGEEASYIVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVI 237 (424)
T ss_dssp SHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCSEEEEEEEEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTS
T ss_pred CHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCcEEEEEEEEcCCEEEeecceeeccccccCCCCCCCCCCeeECCCccC
Confidence 99999999998875322322246899999999999999999988766666656666677787788899999999999768
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 323 TKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 323 ~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
++++.+++.+.+.+.+.+++.++|++|+|++++||+++++| +||+|+|||+|++.++.+.+.+|+|+.+++++++.|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g--~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~ 315 (424)
T 2yw2_A 238 NEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEG--PKVLEFNVRLGDPEAQPILMRVKNDFLETLLNFYEGK 315 (424)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEETTE--EEEEEEESSCCTTTHHHHHHTBCSCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC--cEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC
Confidence 99888888654444556777777888889999999999987 9999999999988876777778999999999999998
Q ss_pred CCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHH
Q 010065 403 LTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEE 482 (519)
Q Consensus 403 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~e 482 (519)
++++ .+.+++++.+++...+||..+..+..+.+++++.. .+++.+++.+... ..+...++++|+++|++.|+|.++
T Consensus 316 l~~~--~~~~~~a~~~~~~~~g~~~~~~~g~~i~~~~~~~~-~~~~~~~~~g~~~-~~~~~~~~~~r~~~v~~~g~~~~~ 391 (424)
T 2yw2_A 316 DVHI--KEDERYALDVVLASRGYPEKPETGKIIHGLDYLKS-MEDVVVFHAGTKK-EGNFTVTSGGRVLNVCAYGKTLKE 391 (424)
T ss_dssp CCCC--CBCSSEEEEEEEECTTTTSSCCCCCBCBCHHHHHT-STTEEEEESSEEE-ETTEEEECSSEEEEEEEEESSHHH
T ss_pred CCcc--cccCCcEEEEEEecCCCCCCCCCCCcCcCcccccC-CCCeEEEEcceEe-eCCEEEecCCcEEEEEEEeCCHHH
Confidence 7643 45556778888888888876656666777776532 3567777777654 346678899999999999999999
Q ss_pred HHHHHHHHhhccccCCeeeccccccccccc
Q 010065 483 AQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512 (519)
Q Consensus 483 a~~~a~~~~~~i~~~g~~~r~dig~~~~~~ 512 (519)
|+++++++++.++++|.|||+|||.+.+..
T Consensus 392 a~~~~~~~~~~i~~~g~~~r~di~~~~~~~ 421 (424)
T 2yw2_A 392 AKERAYEAIRYVCFEGMHYRKDIGDKAFKY 421 (424)
T ss_dssp HHHHHHHHHTTCBCTTCBCCSCTTTTTGGG
T ss_pred HHHHHHHHHhcceeCCcEEcchhhhHhhhh
Confidence 999999999999999999999999887643
|
| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-59 Score=485.51 Aligned_cols=418 Identities=51% Similarity=0.843 Sum_probs=356.9
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
|+|||+|+|+++++++++++++.|++++++++.|++....+ +.+ ..|+.|.+.++++++++++|+|+++.|+.+++.
T Consensus 1 m~ililG~g~r~~~~a~~~~~~~g~~~v~~~~~~~~~~~~~--~~~-~~~~~d~~~l~~~~~~~~~d~v~~~~E~~~~~~ 77 (422)
T 2xcl_A 1 MNVLIIGKGGREHTLAWKAAQSSLVENVFAAPGNDGMAASA--QLV-NIEESDHAGLVSFAKQNQVGLTIVGPEVPLIEG 77 (422)
T ss_dssp CEEEEEECSHHHHHHHHHHTTCTTCSEEEEEECCGGGTTTC--EEC-CCCTTCHHHHHHHHHHTTEEEEEECSHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCChhhhhhc--ccc-ccCcCCHHHHHHHHHHcCCCEEEECCcHHHHHH
Confidence 58999999999999999998888999999988776654332 234 578889999999999999999999999887667
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeC
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~ 242 (519)
+++.++.+|+|++|++++++.+++||..++++|+++|||+|++..+++.+++.+++++++||+|+||..+++|+||.+++
T Consensus 78 ~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~g~Gv~~v~ 157 (422)
T 2xcl_A 78 LVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAM 157 (422)
T ss_dssp HHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSEEEEESSCGGGTCEEEES
T ss_pred HHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEEC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCC
Q 010065 243 TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVL 322 (519)
Q Consensus 243 ~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l 322 (519)
+.+|+.++++.++....++.....++|||||+|+|+++.+++||+.++++...+.+++.++++.++++++++++.|++.+
T Consensus 158 ~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g~E~sv~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l 237 (422)
T 2xcl_A 158 TEEEAIACLHDFLEDEKFGDASASVVIEEYLSGEEFSLMAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQI 237 (422)
T ss_dssp SHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCSEEEEEEEEEETTEEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTS
T ss_pred CHHHHHHHHHHHHhhhhccCCCCeEEEEECCcCcEEEEEEEEcCCEEEecceeeeeehhcCCCCCCCCCCCeeEccCCCC
Confidence 99999999998865322222246899999999999999999988866655555555667777778888899999998768
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 323 TKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 323 ~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+++..+++.+.+.+.+.+++.++|++|.|++++||+++++| +||+|+|||||++.++.+.+.+|.|+.+++++++.|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~~g--~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~ 315 (422)
T 2xcl_A 238 SEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTENG--SKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDDK 315 (422)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE--EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeCCC--cEEEEEecCCCCcHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 99888888665555566777778888889999999999987 9999999999998876676778999999999999998
Q ss_pred CCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHH
Q 010065 403 LTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEE 482 (519)
Q Consensus 403 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~e 482 (519)
+++. .+.++.++.+++...+||..+.++..+.+++++ . +++.+++.+... ..|.+.++++|+++|++.|+|.++
T Consensus 316 l~~~--~~~~~~~~~~~~~~~g~~~~~~~g~~i~~~~~~-~--~~~~~~~~g~~~-~~~~~~~~~~r~~~v~~~g~~~~~ 389 (422)
T 2xcl_A 316 EVDL--RWKDTAAVSVVLASEGYPESYAKGTPIGSLAAE-T--EQVVVFHAGTKA-EGGEFVTNGGRVANVTAFDETFEA 389 (422)
T ss_dssp CCCC--CBCSCEEEEEEEEETTTTSCCCSCCBCCCCCCC-S--SSEEEEESSEEE-CSSSEEECSSEEEEEEEEESSHHH
T ss_pred cCcc--cccCCceEEEEEECCCCCCCCCCCCcccCcccC-C--CCcEEEEeeeEe-eCCEEEeCCCceEEEEEEeCCHHH
Confidence 7643 455556777888888898766666677777664 2 577788877765 467788899999999999999999
Q ss_pred HHHHHHHHhhccccCCeeecccccccccc
Q 010065 483 AQDRAYLAVEEINWPGGFYRRDIGWRALP 511 (519)
Q Consensus 483 a~~~a~~~~~~i~~~g~~~r~dig~~~~~ 511 (519)
|+++++++++.|+++|.|||+|||.+.+.
T Consensus 390 a~~~~~~~~~~i~~~g~~~r~di~~~~~~ 418 (422)
T 2xcl_A 390 ARDRVYKAVDEIFKPGLFFRKDIGARALK 418 (422)
T ss_dssp HHHHHHHHHHHHCCTTEECCSCTTHHHHH
T ss_pred HHHHHHHHHhcceeCCcEecchhhHHHHh
Confidence 99999999999999999999999988764
|
| >2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-58 Score=485.65 Aligned_cols=423 Identities=48% Similarity=0.827 Sum_probs=351.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVS 161 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~ 161 (519)
+++|||+|+|+++++++|+++++.|++++++++++++....+....+ ..|+.|.+.++++++++++|+|+++.|+.+..
T Consensus 24 ~~~IlIlG~g~r~~al~~~~a~~~g~~~v~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~d~V~~~~E~~~~~ 102 (452)
T 2qk4_A 24 AARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNT-AISISDHTALAQFCKEKKIEFVVVGPEAPLAA 102 (452)
T ss_dssp SEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGSBSSSEEEC-CCCSSCHHHHHHHHHHHTCCEEEECSSHHHHT
T ss_pred CcEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCChhhhhhcccccc-ccCCCCHHHHHHHHHHcCCCEEEECCcHHHHH
Confidence 47999999999888899999888899988888877655433322234 57888999999999999999999999998666
Q ss_pred HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC-EEEEeCCCCCCCcEEE
Q 010065 162 GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGLAAGKGVIV 240 (519)
Q Consensus 162 ~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P-~VvKP~~g~gs~GV~~ 240 (519)
.+++.++.+|+|++|++++++.+++||..++++|+++|||+|++..+++.+++.+++++++|| +|+||..+++|+||++
T Consensus 103 ~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvvKp~~~~gg~Gv~~ 182 (452)
T 2qk4_A 103 GIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLAAGKGVIV 182 (452)
T ss_dssp THHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHHCSSCEEEEEESBC---CCEEE
T ss_pred HHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhCCCCeEEEEeCCCCCCCCEEE
Confidence 778889999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCC
Q 010065 241 AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAP 320 (519)
Q Consensus 241 v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~ 320 (519)
+++.+|+.++++.++....|+..+..++|||||+|+|+++.+++||+.+.++...+.+++.++++.++++++++++.|++
T Consensus 183 v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G~E~sv~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~ 262 (452)
T 2qk4_A 183 AKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAP 262 (452)
T ss_dssp CSSHHHHHHHHHHHTTC-------CCEEEEECCCSEEEEEEEEECSSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCT
T ss_pred eCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCeEEEEEEECCCEEEEcceeeecccccCCCCCCCCCCceeeccCc
Confidence 99999999999887643223222478999999999999999999877566666666566777777788889999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 321 VLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 321 ~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
.+++++.+++.+.+.+.+.+++.++|++|+|++++||+++++| +||+|+|||+|++.++.+.+.+|+|+.+++++++.
T Consensus 263 ~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g--~~viEiN~R~~~~~~~~i~~~~g~d~~~~~~~~~~ 340 (452)
T 2qk4_A 263 QVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNG--PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLD 340 (452)
T ss_dssp TCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEETTE--EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC--cEEEEEeccCCCcHHHHHHHHhCCCHHHHHHHHHc
Confidence 6899888888644444456777778888889999999999987 99999999999888766777789999999999999
Q ss_pred CCCCCCCcccCCCc-EEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCC
Q 010065 401 GELTGVTLNWSPGS-AMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKD 479 (519)
Q Consensus 401 g~~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t 479 (519)
|.+++..+.+.++. ++.+++...+||..+..+..+.+++++ . .+++.+++.|... ..+.+.++++|+++|++.|+|
T Consensus 341 g~l~~~~~~~~~~~~a~~~~l~~~g~~~~~~~g~~i~~l~~~-~-~~~v~~~~~G~~~-~~~~~~~~~~rv~~v~~~g~~ 417 (452)
T 2qk4_A 341 GLLCTSLPVWLENHTALTVVMASKGYPGDYTKGVEITGFPEA-Q-ALGLEVFHAGTAL-KNGKVVTHGGRVLAVTAIREN 417 (452)
T ss_dssp TCGGGGCCCBCTTCEEEEEEEECTTTTSSCCCSCBCBCHHHH-H-HTTCEEEESSEEE-ETTEEEECSSEEEEEEEEESS
T ss_pred CCCCcccceecCCCcEEEEEEECCCCCCCCCCCCcccCcccc-C-CCCcEEEECcEEe-eCCeEEecCCeEEEEEEecCC
Confidence 98766555655556 778888888888766556567777654 1 2467778777765 356778899999999999999
Q ss_pred HHHHHHHHHHHhhccccCCeeeccccccccc
Q 010065 480 VEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510 (519)
Q Consensus 480 ~~ea~~~a~~~~~~i~~~g~~~r~dig~~~~ 510 (519)
.++|+++++++++.|+++|.|||+|||.+.+
T Consensus 418 ~~~a~~~~~~~~~~i~~~g~~~r~di~~~~~ 448 (452)
T 2qk4_A 418 LISALEEAKKGLAAIKFEGAIYRKDIGFRAI 448 (452)
T ss_dssp HHHHHHHHHHHHHHCBCTTCBCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcEEchhcchhhh
Confidence 9999999999999999999999999998765
|
| >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-55 Score=457.42 Aligned_cols=398 Identities=38% Similarity=0.611 Sum_probs=324.4
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
++++|||||+|++++.++|+++++.| +++.+ ++|++....+. . + |.+.++++++++++|+|++++|+..+
T Consensus 14 ~~~~vlviG~Ggr~~a~a~~~a~~~g-~v~~~-~~np~~~~~d~--~---i---d~~~l~~~~~~~~~d~V~~~~E~~~~ 83 (412)
T 1vkz_A 14 KAVRVHILGSGGREHAIGWAFAKQGY-EVHFY-PGNAGTKRDGT--N---H---PYEGEKTLKAIPEEDIVIPGSEEFLV 83 (412)
T ss_dssp --CEEEEEECSHHHHHHHHHHHHTTC-EEEEE-ECCTTGGGTSE--E---C---CCCTHHHHHTSCSSCEECCSSGGGTC
T ss_pred ccCEEEEECCCHHHHHHHHHHHhCCC-CEEEE-CCChhhhcccc--c---C---CHHHHHHHHHHcCCCEEEECCcHHHH
Confidence 36799999999999999999988878 65555 77777654321 1 2 35678999999999999999999875
Q ss_pred HHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEE
Q 010065 161 SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIV 240 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~ 240 (519)
+.+ ++.++. ++|++++++.+++||..+|++|+++|||+|++..+++.+++.+++++++||+||||..+++|+||++
T Consensus 84 a~~---~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~ 159 (412)
T 1vkz_A 84 EGV---SNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLI 159 (412)
T ss_dssp C--------CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEE
T ss_pred HHH---HHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEE
Confidence 444 677776 6699999999999999999999999999999999999999999888999999999999999999999
Q ss_pred eCCHHHHHHHHHHHHhhc-cCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecC
Q 010065 241 AMTLEEAYEAVDSMLLKN-AFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPA 319 (519)
Q Consensus 241 v~~~~el~~a~~~~~~~~-~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~ 319 (519)
+++.+|+.++++.++... .|+. ...++|||||+|+|+++.+++||+.+.++...+.+++.++++.++++++++++.|+
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~-~~~vlvEe~i~G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~ 238 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGV-KGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPV 238 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTC-CSCEEEEECCCSEEEEEEEEEETTEEEECCCCEECCEEETTTEEEECSCSEEEECC
T ss_pred ECCHHHHHHHHHHHHhhccccCC-CCeEEEEECCcCcEEEEEEEECCCEEEEeeeeEeeeeccCCCCCCCCCCceEEECC
Confidence 999999999999887432 2322 24899999999999999999988866656544556677787888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHH
Q 010065 320 PVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAAC 399 (519)
Q Consensus 320 ~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~ 399 (519)
+ +++++.+++++.+.+ +.+++...|++|.|++++||+++++| +||+|+|||+|++.++.+.+.+|+|+.+++++++
T Consensus 239 ~-l~~~~~~~i~~~a~~-~~~~l~~~g~~~~G~~~ve~~~~~~g--~~viEiN~R~g~~~~~~~~~~~g~d~~~~~~~~~ 314 (412)
T 1vkz_A 239 E-IPSDTIKKIEELFDK-TLWGVEKEGYAYRGFLYLGLMLHDGD--PYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGY 314 (412)
T ss_dssp C-CCHHHHHHHHHHHHH-HHHHHHHTTCCCEEEEEEEEEEETTE--EEEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHH-HHHHHHhcCCCcEEEEEEEEEEECCC--cEEEEEecCCCCCcceeehhhcCCCHHHHHHHHh
Confidence 9 999998888776643 44455555777889999999999987 9999999999998887788888999999999999
Q ss_pred hCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCC
Q 010065 400 RGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKD 479 (519)
Q Consensus 400 ~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t 479 (519)
.|.+++. .+.+++++.++++..+||..+..+..+. ++. ++ .+++.|... ..+...++++|+|+|++.|+|
T Consensus 315 ~g~l~~~--~~~~~~a~~~~l~~~~~~~~~~~g~~i~-l~~-----~~-~v~~~g~~~-~~~~~~~~~~~vg~v~~~g~~ 384 (412)
T 1vkz_A 315 RGGKMEP--VEPRGFAVDVVLAARGYPDAPEKGKEIT-LPE-----EG-LIFFAGVAE-KDGKLVTNGGRVLHCMGTGET 384 (412)
T ss_dssp HTSCCCC--CCCCSEEEEEEEECTTTTTSCCCCCBCB-CCS-----SC-CEEESSEEE-ETTEEEECSSEEEEEEEEESS
T ss_pred cCCCccc--cccCCeEEEEEEecCCCCCCCCCCCEee-eCC-----CC-cEEECcccc-cCCeEEeCCCcEEEEEEeCCC
Confidence 9987643 4555677888888888876554444443 322 33 566666653 345677889999999999999
Q ss_pred HHHHHHHHHHHhhccccCCeeecccccc
Q 010065 480 VEEAQDRAYLAVEEINWPGGFYRRDIGW 507 (519)
Q Consensus 480 ~~ea~~~a~~~~~~i~~~g~~~r~dig~ 507 (519)
.++|+++++++++.|+++|.|||+|||.
T Consensus 385 ~~ea~~~~~~~~~~i~~~g~~~r~di~~ 412 (412)
T 1vkz_A 385 KEEARRKAYELAEKVHFEGKTYRRDIAL 412 (412)
T ss_dssp HHHHHHHHHHHHHHCBCTTCBCCTTCC-
T ss_pred HHHHHHHHHHHhcceeeCCCEecCCCCC
Confidence 9999999999999999999999999994
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-47 Score=386.95 Aligned_cols=310 Identities=16% Similarity=0.158 Sum_probs=227.6
Q ss_pred ccceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC-CccccCC
Q 010065 53 KSSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD-ATCIPDL 131 (519)
Q Consensus 53 ~~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~-~~~v~~~ 131 (519)
..+|||+|||||.|+||+||+.||.+ +..+|.+. +|+++.++.+..+.|.... ...+ ..
T Consensus 2 ~~~~~v~vl~GG~S~E~evSl~Sa~~------------------v~~~l~~~-~~~v~~i~i~~~~~~~~~~~~~~~-~~ 61 (372)
T 3tqt_A 2 AEKLHISVLCGGQSTEHEISIQSAKN------------------IVNTLDAA-KYLISVIFIDHVGRWYLIDQPEMF-LA 61 (372)
T ss_dssp CCSEEEEEEEECSSTTHHHHHHHHHH------------------HHHHSCTT-TEEEEEEEECTTSCEEEECCHHHH-HH
T ss_pred CCCCEEEEEeccCCCccHhHHHHHHH------------------HHHHHhhc-CceEEEEEECCCCCEEeccchhhh-hc
Confidence 45789999999999999999999876 56666554 7777777655444332100 0000 00
Q ss_pred CCCCHHHHH--------------------HHHH-HcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHh
Q 010065 132 DVLDGDAVI--------------------SFCR-KWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALE 185 (519)
Q Consensus 132 d~~d~~~l~--------------------~~~~-~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~ 185 (519)
+......+. .... ..++|+||| .+||+.+|++ |+.+|+||+|+++.+++++
T Consensus 62 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~l---le~~gipy~G~~~~a~~~~ 138 (372)
T 3tqt_A 62 HSPDHLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGL---LELLNLPYVGANVQSSAVC 138 (372)
T ss_dssp SCHHHHHHHTCSEEEEECTTCSSCCEEEC----CEECCSEEEECCCSTTTTSSHHHHH---HHHTTCCBSSCCHHHHHHH
T ss_pred cccccccccccccceeecccccccceeeccccccccCCCEEEEcCCCCCCcCHHHHHH---HHHcCCCeeCcCHHHHHHH
Confidence 000000000 0001 147999999 2799977666 9999999999999999999
Q ss_pred cCHHHHHHHHHHcCCCCCCeeecCCHHH----HHHHHHHhCCC-EEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccC
Q 010065 186 GSKNFMKNLCDKYGIPTAKYKTFTDPNA----AKQYIQEEGAP-IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAF 260 (519)
Q Consensus 186 ~dK~~~k~~l~~~Gi~~p~~~~v~~~~~----~~~~~~~~g~P-~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~ 260 (519)
+||..+|++++++|||+|++..+.+.++ +.++.++++|| +||||.+++||.||.++++.+|+.++++.++.
T Consensus 139 ~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~---- 214 (372)
T 3tqt_A 139 MEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFR---- 214 (372)
T ss_dssp HSHHHHHHHHHHTTCCBCCCEEECTTSCCTTHHHHHHHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTT----
T ss_pred hCHHHHHHHHHHCCcCCCCEEEEechhhhhhHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh----
Confidence 9999999999999999999999887653 55677889999 99999999999999999999999999998863
Q ss_pred CCCCCcEEEEeccCCcEEEEEEEEeCCe-eEEeccccccccccCCCCCCCCCC-ceEEecCCCCCHHHHHHHHHHHHHHH
Q 010065 261 GSAGCRVIIEEFLEGEEASFFALVDGEN-AIPLESAQDHKRVGDGDTGPNTGG-MGAYSPAPVLTKELQSVVMESIILPT 338 (519)
Q Consensus 261 ~~~~~~~lvEe~I~G~E~sv~~l~dg~~-~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~P~~~l~~~~~~~i~~~a~~~~ 338 (519)
.+..+|||+||+|+|++|.++.++.. +.+.........+++++.+|..+. +.+.+|++ ++++..+++++.+.
T Consensus 215 --~~~~vlVEe~I~G~E~~v~vl~~~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~-l~~~~~~~i~~~a~--- 288 (372)
T 3tqt_A 215 --YDDRLMVEPRIRGREIECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD-LSESVTKQIQQIAI--- 288 (372)
T ss_dssp --TCSCEEEEECCCSEEEEEEEEESSSCEECCCEEEECC---------------CEEESCCC-CCHHHHHHHHHHHH---
T ss_pred --cCCCEEEECCCCCEEEEEEEEeCCCceEeeeEEEecCCCccchhhcccCCCceEEEeCCC-CCHHHHHHHHHHHH---
Confidence 56789999999999999999986642 222233333446889999998887 88899999 99999999988774
Q ss_pred HHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 339 VKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 339 ~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
++++++|+. |++|+||+++++| ++||+|||||||+|.+ +++|. +|+|+.+++.+++.
T Consensus 289 -~~~~aLg~~--G~~rvDf~~~~dg-~~~vlEINt~PG~t~~-S~~p~~~~~~G~~~~~li~~li~ 349 (372)
T 3tqt_A 289 -DAFKMVHCS--GMARVDFFVTPNN-KVLVNEINTIPGFTNI-SMYPKMWEASGLPCPNLLDQLIE 349 (372)
T ss_dssp -HHHHHTTCC--EEEEEEEEECTTC-CEEEEEEESSCCCSTT-CHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -HHHHHhCCc--cEEEEEEEEeCCC-cEEEEEEECCCCcCcc-CHHHHHHHHhCCCHHHHHHHHHH
Confidence 688999988 9999999999876 8999999999999876 56554 49999998877654
|
| >4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-47 Score=385.73 Aligned_cols=312 Identities=18% Similarity=0.135 Sum_probs=242.9
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCC-------
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNS--GDA------- 125 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~------- 125 (519)
+.||+|||||.|+||+||+.||.+ ++++|++. ||+++.++.+..+.+.. ...
T Consensus 3 kkkv~vl~GG~S~E~evSl~Sa~~------------------v~~aL~~~-gy~v~~i~i~~~g~~~~~~~~~~~~~~~~ 63 (357)
T 4fu0_A 3 NKKIAVIFGGNSTEYEVSLQSASA------------------VFENINTN-KFDIIPIGITRSGEWYHYTGEKEKILNNT 63 (357)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHH------------------HHHHSCTT-TEEEEEEEECTTCCEEEECSCTHHHHTTC
T ss_pred CCEEEEEECCCccchHHHHHHHHH------------------HHHHHhHh-CCEEEEEEEeCCCceeecCCCHHHhhcCc
Confidence 459999999999999999999876 57777665 88887775332222110 000
Q ss_pred -----cccc--CCCCC-C----HHHHHHHHHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCH
Q 010065 126 -----TCIP--DLDVL-D----GDAVISFCRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSK 188 (519)
Q Consensus 126 -----~~v~--~~d~~-d----~~~l~~~~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK 188 (519)
.... ..+.. . .+......+..++|+||+. +|++.+|++ |+.+|+||+|+++.++++++||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~---le~~gip~~G~~~~a~~~~~DK 140 (357)
T 4fu0_A 64 WFEDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGI---FELAGIPVVGCDTLSSALCMDK 140 (357)
T ss_dssp GGGCGGGEEEEEECCCTTTCEEEEC----CEEEECSEEEECCCSHHHHSSHHHHH---HHHTTCCBSSCCHHHHHHHHCH
T ss_pred chhhhhccccccccccccccchhhhhhhhHhhcCCCEEEECCcCccccCHHHHHH---HHHCCCcEECcCHHHHHHHhCH
Confidence 0000 00000 0 1112233344579999993 688876665 9999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCeeecCCHHH---HHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCC
Q 010065 189 NFMKNLCDKYGIPTAKYKTFTDPNA---AKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGC 265 (519)
Q Consensus 189 ~~~k~~l~~~Gi~~p~~~~v~~~~~---~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~ 265 (519)
..+|++++++|||+|++..+.+.++ +.++.+++|||+||||++++||+|++++++.+||.++++.++. .+.
T Consensus 141 ~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~------~~~ 214 (357)
T 4fu0_A 141 DRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFE------HDT 214 (357)
T ss_dssp HHHHHHHHHTTCBCCCEEEEEGGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTT------TCS
T ss_pred HHHHHHHHHCCCCCCCEEeecCCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhc------cCC
Confidence 9999999999999999988875443 4566788999999999999999999999999999999998864 568
Q ss_pred cEEEEeccCCcEEEEEEEEeCCeeE-EeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010065 266 RVIIEEFLEGEEASFFALVDGENAI-PLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSA 344 (519)
Q Consensus 266 ~~lvEe~I~G~E~sv~~l~dg~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a 344 (519)
.+++|+||+|+|++|.++.++.... ++........++++..++..+......|++ ++++..+++++.|. +++++
T Consensus 215 ~vlvE~~i~G~e~~v~vl~~~~~~~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~-l~~~~~~~i~~~A~----~~~~a 289 (357)
T 4fu0_A 215 EVIVEETINGFEVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPAR-IDAEAEKRIQEAAV----TIYKA 289 (357)
T ss_dssp EEEEEECCCSEEEEEEEEESSSEEECCCEEEEECHHHHTSCSBCSSCCEEEESSCS-CCHHHHHHHHHHHH----HHHHH
T ss_pred eEEEEEecCCEEEEEEEEecCCceEEEEEEEEcccccccccccccCCCceEecCCC-CCHHHHHHHHHHHH----HHHHH
Confidence 9999999999999999998665332 233333445678888888888888888998 99999999998874 68899
Q ss_pred cCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHhCCC
Q 010065 345 EGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACRGEL 403 (519)
Q Consensus 345 ~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~g~~ 403 (519)
+|+. |+++|||+++++| ++||+|||||||+|.+ +++|. +|+++.+++.+++.-.+
T Consensus 290 Lg~~--G~~~VDf~~~~dg-~~~vlEvNt~PG~t~~-S~~p~~~~~~G~~~~~li~~li~~al 348 (357)
T 4fu0_A 290 LGCS--GFSRVDMFYTPSG-EIVFNEVNTIPGFTSH-SRYPNMMKGIGLSFSQMLDKLIGLYV 348 (357)
T ss_dssp TTCC--EEEEEEEEECTTC-CEEEEEEESSCCCSTT-CHHHHHHHTTTCCHHHHHHHHHHTTC
T ss_pred hCCc--ceEEEEEEEeCCC-CEEEEEEeCCCCCCcc-cHHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 9987 9999999999887 8999999999999987 66654 39999999888776553
|
| >3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=375.13 Aligned_cols=398 Identities=18% Similarity=0.178 Sum_probs=279.6
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCC-CCCH----HHHHHHHHHcCCcEEEEC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLD-VLDG----DAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d-~~d~----~~l~~~~~~~~id~Vi~g 154 (519)
++++++|+|+|.....+.+++++. |++++++++..... ......+....++ ..|. +.+.+++++.++|+|++.
T Consensus 4 ~~k~l~Il~~~~~~~~i~~aa~~l-G~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~ 82 (425)
T 3vot_A 4 RNKNLAIICQNKHLPFIFEEAERL-GLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTL 82 (425)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHT-TCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECC
T ss_pred CCcEEEEECCChhHHHHHHHHHHC-CCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEEC
Confidence 357888888875433445555544 99999987653222 1111122111222 3443 445556677899999998
Q ss_pred CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCC
Q 010065 155 PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAA 234 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~g 234 (519)
.|.... ..+...+.+|+| |++++++.+++||..||++|+++|||+|++..+++.+++.. .+++||+||||..++|
T Consensus 83 ~e~~~~-~~a~l~e~lglp--g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~--~~~g~P~vvKp~~g~g 157 (425)
T 3vot_A 83 FEPALP-FTAKAAEALNLP--GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTLADLEN--RKLSYPLVVKPVNGFS 157 (425)
T ss_dssp CGGGHH-HHHHHHHHTTCS--SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSGGGGTT--CCCCSSEEEEESCC--
T ss_pred CchhHH-HHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCcHHHHHH--hhcCCcEEEEECCCCC
Confidence 877653 346667899999 99999999999999999999999999999999999888754 5789999999999999
Q ss_pred CCcEEEeCCHHHHHHHHHHHHhhcc-----CCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCC
Q 010065 235 GKGVIVAMTLEEAYEAVDSMLLKNA-----FGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPN 309 (519)
Q Consensus 235 s~GV~~v~~~~el~~a~~~~~~~~~-----~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~ 309 (519)
|+||+++++.+|+.++++.+..... +...+..+++|+||+|+|++++++.+++....+....... ..+++
T Consensus 158 s~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~e~sv~~~~~~g~~~~~~~~~~~~-----~~~~~ 232 (425)
T 3vot_A 158 SQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAIETLSIQGNVHVLSIGYKGN-----SKGPF 232 (425)
T ss_dssp ---CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCSCEEEEEEEEETTEEEEEEEEEEEC-----CCCSB
T ss_pred CCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecCcEEEEEEEEeCCcEEEEeEEEEec-----cCCCc
Confidence 9999999999999999988764211 1123578999999999999999998655444443332221 12345
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH-HH-HHh
Q 010065 310 TGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV-LM-VRL 387 (519)
Q Consensus 310 ~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~-~~-~~~ 387 (519)
+.+.+++.|++ ++++..+++.+.+ .++++++|+. +|++|+||+++++| ++||+|+||||||+..+. +. ..+
T Consensus 233 ~~~~~~~~Pa~-l~~~~~~~i~~~~----~~~~~alg~~-~G~~~ve~~~~~dG-~~~~iEiN~R~gG~~~~~~l~~~~~ 305 (425)
T 3vot_A 233 FEEGVYIAPAQ-LKEETRLAIVKEV----TGAVSALGIH-QGPAHTELRLDKDG-TPYVIEVGARIGGSGVSHYIVKEST 305 (425)
T ss_dssp CCCCEEEESCC-CCHHHHHHHHHHH----HHHHHHTTCC-SEEEEEEEEECTTC-CEEEEEEESSCGGGGHHHHHHHHHH
T ss_pred cccceEeeccc-CCHHHHHHHHHHH----HHHHHHcCCC-cceEEEEEEEEeCC-cEEEEEEecCCCCCCchHHHHHHHH
Confidence 55678889999 8998888888776 4688899986 39999999999987 899999999998876543 33 346
Q ss_pred CCCHHHHHHHHHhCCCCCCCc--ccCCC-cEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcE-
Q 010065 388 ESDLAEVLLAACRGELTGVTL--NWSPG-SAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNF- 463 (519)
Q Consensus 388 G~d~~~~~i~~~~g~~~~~~~--~~~~~-~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 463 (519)
|+|+.+++++.++|....... ...+. .+..+++. ...++.. ..+.+++++.+ .+++..++... +.|..
T Consensus 306 G~d~~~~~i~~alg~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~---~~i~g~~~~~~-~p~v~~~~~~~---~~G~~v 377 (425)
T 3vot_A 306 GINFMQLVLQNALKPLESSEFEGEIRPVRTAGNYIIP-VQGSGTF---EKIDGLEEVKQ-RQEVKRVFQFM---RRGAKI 377 (425)
T ss_dssp CCCHHHHHHHHHHSCCCGGGSCSCCCCSSEEEEEECC-CCSCEEE---EEEETHHHHHT-CTTEEEEEECC---CTTCEE
T ss_pred CCCHHHHHHHHHCCCccccccccccccceEEEEEEEc-CCCCeEE---EecCCHHHHhc-CCCeEEEEEEe---cCCCEe
Confidence 999999999999997443322 22222 33333322 2223322 35778888765 34543222111 23432
Q ss_pred ---EecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCeeecccccc
Q 010065 464 ---IATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGW 507 (519)
Q Consensus 464 ---~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~ 507 (519)
.++++|+|+|++.|+|.+||+++++++.+.|+| .|++||.-
T Consensus 378 ~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~i---~~~~~i~~ 421 (425)
T 3vot_A 378 LPYPHFSGYPGFILTSHHSYEECEAFYRELDDELHI---IYQNNLTG 421 (425)
T ss_dssp CCTTCCCCCSEEEEEEESSHHHHHHHHHHHHHHCEE---EECC----
T ss_pred CCCCCCCCeEEEEEEEECCHHHHHHHHHHHhCccEE---EEeCCCCc
Confidence 246789999999999999999999999999985 69999864
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-46 Score=381.45 Aligned_cols=304 Identities=13% Similarity=0.086 Sum_probs=221.9
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC--Ccccc---
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD--ATCIP--- 129 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~--~~~v~--- 129 (519)
+|||+|||||.|+||+||+.||.+ +..+|.+. |++++.++.+..+.+.... ...+.
T Consensus 37 ~~~v~vl~GG~S~E~evSl~Sa~~------------------v~~al~~~-~~~v~~i~i~~~g~~~~~~~~~~~~~~~~ 97 (383)
T 3k3p_A 37 KETLVLLYGGRSAERDVSVLSAES------------------VMRAINYD-NFLVKTYFITQAGDFIKTQEFDSQPSETD 97 (383)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHH------------------HHHHSCTT-TEEEEEEEECTTSCEEEEEEESSCCC--C
T ss_pred CCeEEEEeCCCCCcchHHHHHHHH------------------HHHHhhhc-CCEEEEEEecCCCCEEecccccccccccc
Confidence 569999999999999999999876 56777655 8888888765443332100 00000
Q ss_pred CCCCC---------CHHHHHHHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH
Q 010065 130 DLDVL---------DGDAVISFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC 195 (519)
Q Consensus 130 ~~d~~---------d~~~l~~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l 195 (519)
..... +...+ . .++|+||| .+||+.++++ |+.+|+||+|+++.++++++||..+|++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~---~--~~~D~vf~~lhG~~GEdg~iq~l---le~~gipy~G~~~~a~~~~~DK~~~k~~l 169 (383)
T 3k3p_A 98 KLMTNDTIIASQKIKPSDI---Y--EEEAVVFPVLHGPMGEDGSIQGF---LEVLKMPYVGTNILSSSVAMDKITTNQVL 169 (383)
T ss_dssp CCCCTTSCCGGGEECGGGG---C--CTTCEEEEECCSTTTSSSHHHHH---HHHTTCCBSSCCHHHHHHHHCHHHHHHHH
T ss_pred ccccccccccccccccccc---c--cCCCEEEEcCCCCCcchHHHHHH---HHHcCCCccCCCHHHHHHHhCHHHHHHHH
Confidence 00000 00011 0 37899999 2799977665 99999999999999999999999999999
Q ss_pred HHcC-CCCCCeeecCCH----HHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEE
Q 010065 196 DKYG-IPTAKYKTFTDP----NAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIE 270 (519)
Q Consensus 196 ~~~G-i~~p~~~~v~~~----~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvE 270 (519)
+++| ||+|++..+.+. +++.++.++++||+||||..+++|.||.++++.+|+.++++.++. .+..+|||
T Consensus 170 ~~~G~Ipvp~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~------~~~~vlVE 243 (383)
T 3k3p_A 170 ESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALK------YDSRVLIE 243 (383)
T ss_dssp HHHCCCCBCCEEEEETTSCHHHHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHH------HCSEEEEE
T ss_pred HhCCCcCCCCEEEEeCccchhHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------CCCeEEEE
Confidence 9999 999999998776 466777889999999999999999999999999999999998875 45789999
Q ss_pred eccCCcEEEEEEEEeCCe-eEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 010065 271 EFLEGEEASFFALVDGEN-AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKF 349 (519)
Q Consensus 271 e~I~G~E~sv~~l~dg~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~ 349 (519)
+||+|+|++|.++.|+.. +.+.........+++++.+|..+.....+|++ ++++..+++++.+ .++++++|++
T Consensus 244 e~I~G~E~~v~vl~d~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a----~~~~~aLg~~- 317 (383)
T 3k3p_A 244 QGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMRDYA----ATAFRTLGCC- 317 (383)
T ss_dssp ECCCSEEEEEEEEESSSCEECCCEEEC-----------------CEESSCC-CCHHHHHHHHHHH----HHHHHHTTCC-
T ss_pred cCCCCeEEEEEEEeCCCeeEEeeEEEecCCCccchhhcccCCCeeEEecCC-CCHHHHHHHHHHH----HHHHHHcCCc-
Confidence 999999999999987652 22223333344688999999888888999999 9999999988877 4688999988
Q ss_pred eeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 350 VGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 350 ~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
|++++||+++++| ++||+|||||||+|.+ +++|. .|+|+.+++.+++.
T Consensus 318 -G~~~vDf~~~~~g-~~~vlEINtrPG~t~~-S~~p~~~~a~Gi~~~~li~~li~ 369 (383)
T 3k3p_A 318 -GLSRCDFFLTEDG-KVYLNELNTMPGFTQW-SMYPLLWENMGLSYSVLIEELVS 369 (383)
T ss_dssp -EEEEEEEEECTTC-CEEEEEEESSCCCC---CHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -eEEEEEEEEECCC-CEEEEEeeCCCCCCcc-cHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999876 8999999999999876 56654 39999998877654
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-46 Score=379.61 Aligned_cols=310 Identities=16% Similarity=0.154 Sum_probs=241.6
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCC-CCcc-cc--
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSG-DATC-IP-- 129 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~-~~~~-v~-- 129 (519)
.+|||+|||||.|+||+||+.||++ ++.+|.+. |++++.++.+..+.+... .... +.
T Consensus 2 ~~~~v~vl~GG~S~E~evSl~S~~~------------------v~~al~~~-~~~v~~i~i~~~~~~~~~~~~~~~~~~~ 62 (364)
T 3i12_A 2 AKLRVGIVFGGKSAEHEVSLQSAKN------------------IVDAIDKT-RFDVVLLGIDKAGQWHVNDAENYLQNAD 62 (364)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHH------------------HHHHSCTT-TEEEEEEEECTTSCEEEECSSSSBSSTT
T ss_pred CccEEEEEeccCCCCccchHHHHHH------------------HHHHHhhc-CCeEEEEEECCCCCEEecccchhhhccc
Confidence 3689999999999999999999876 56666555 788877775543332210 0000 00
Q ss_pred --------------CCCCCCH-HHHH---HHHHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhc
Q 010065 130 --------------DLDVLDG-DAVI---SFCRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEG 186 (519)
Q Consensus 130 --------------~~d~~d~-~~l~---~~~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~ 186 (519)
.+.+... ..+. ......++|+|||. +||+.++++ |+.+|+||+|+++.++++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~~---le~~gip~~G~~~~a~~~~~ 139 (364)
T 3i12_A 63 DPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM---LRVANLPFVGSDVLSSAACM 139 (364)
T ss_dssp CTTTCCBCCCSCBEEECTTCSSSCEEETTTCCBCCCCSEEEECCCSTTTTSSHHHHH---HHHTTCCBSSCCHHHHHHHH
T ss_pred cccccccccccccceecccccccceeccccccccCCCCEEEEeCCCCCCcCHHHHHH---HHHcCCCccCCCHHHHHHHH
Confidence 0000000 0000 00013479999993 699876665 99999999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHH----HHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCC
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPN----AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGS 262 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~----~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~ 262 (519)
||..+|++++++|||+|++..+.+.+ ++.++.++++||+||||..+++|.||.++++.+|+.++++.++.
T Consensus 140 DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~------ 213 (364)
T 3i12_A 140 DKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFE------ 213 (364)
T ss_dssp CHHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHCCCCCCCEEEEEccccchhhHHHHHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHh------
Confidence 99999999999999999999998877 77788889999999999999999999999999999999998875
Q ss_pred CCCcEEEEeccCCcEEEEEEEEeCC-eeEEeccccccccccCCCCCCCCCC-ceEEecCCCCCHHHHHHHHHHHHHHHHH
Q 010065 263 AGCRVIIEEFLEGEEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNTGG-MGAYSPAPVLTKELQSVVMESIILPTVK 340 (519)
Q Consensus 263 ~~~~~lvEe~I~G~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~P~~~l~~~~~~~i~~~a~~~~~~ 340 (519)
.+..+|||+||+|+|++|.++.++. .+.+...+.....+++++.+|..+. +.+++|++ ++++..+++++.+ .+
T Consensus 214 ~~~~vlVEe~I~G~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a----~~ 288 (364)
T 3i12_A 214 FDHKVVVEQGIKGREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQ-IPSEVNDKIRAIA----IQ 288 (364)
T ss_dssp HCSEEEEEECCCSEEEEEEEEESSSCEEEEEEEEECCTTCC--TTTTSGGGGCEEESSCS-SCHHHHHHHHHHH----HH
T ss_pred cCCcEEEEcCcCCeEEEEEEEeCCCceEeeeEEEecCCCccCHHHcccCCCceEEEeCCC-CCHHHHHHHHHHH----HH
Confidence 3578999999999999999997654 2333444434446888898987766 78889999 9999988888877 46
Q ss_pred HHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 341 GMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 341 ~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
+++++|+. |++|+||+++++| ++|++|||+|||++.+ +++|. .|+|+.+++.+++.
T Consensus 289 ~~~alg~~--G~~~vD~~~~~~g-~~~vlEiN~~Pg~t~~-s~~p~~~~a~G~~~~~l~~~li~ 348 (364)
T 3i12_A 289 AYQTLGCA--GMARVDVFLTADN-EVVINEINTLPGFTNI-SMYPKLWQASGLGYTDLISRLIE 348 (364)
T ss_dssp HHHHTTCC--EEEEEEEEECTTC-CEEEEEEESSCCCSTT-CHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHhCCc--eEEEEEEEEecCC-CEEEEEeeCCCCCCCC-CHHHHHHHHhCcCHHHHHHHHHH
Confidence 88999987 9999999999877 8999999999999876 55544 49999998877654
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-46 Score=382.78 Aligned_cols=309 Identities=17% Similarity=0.147 Sum_probs=231.3
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCC--------
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDA-------- 125 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~-------- 125 (519)
.+|||+|||||.|+||+||+.||.+ ++.+|.+. |++++.++.+..+.+.....
T Consensus 21 ~~~~v~vl~GG~S~E~evSl~Sa~~------------------v~~al~~~-~~~v~~i~i~~~~~~~~~~~~~~~~~~~ 81 (386)
T 3e5n_A 21 RKIRVGLIFGGKSAEHEVSLQSARN------------------ILDALDPQ-RFEPVLIGIDKQGQWHVNDPDSFLLHAD 81 (386)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHH------------------HHHHSCTT-TEEEEEEEECTTSCEEEECGGGSEESTT
T ss_pred CCceEEEEeccCCCCchhHHHHHHH------------------HHHHhCcc-CCEEEEEEECCCCCEEecccchhhcccc
Confidence 5789999999999999999999876 56666554 78777776554332221000
Q ss_pred -----------ccccCCCCCCHH-HH---HHHHHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHh
Q 010065 126 -----------TCIPDLDVLDGD-AV---ISFCRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALE 185 (519)
Q Consensus 126 -----------~~v~~~d~~d~~-~l---~~~~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~ 185 (519)
..+ .+.+.+.. .+ .......++|+|||. +||+.++++ |+.+|+||+|+++.+++++
T Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~l---le~~gipy~G~~~~a~~~~ 157 (386)
T 3e5n_A 82 DPARIALHRSGRGV-ALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGL---LRMANLPFVGSGVLGSAVA 157 (386)
T ss_dssp CTTTCEECCCCCCE-EECTTCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHH---HHHTTCCBSSCCHHHHHHH
T ss_pred ccccccccccccce-eeccCccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHH---HHHcCCCccCCCHHHHHHH
Confidence 000 00000000 00 000123579999993 688876655 9999999999999999999
Q ss_pred cCHHHHHHHHHHcCCCCCCeeecCCHH----HHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCC
Q 010065 186 GSKNFMKNLCDKYGIPTAKYKTFTDPN----AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFG 261 (519)
Q Consensus 186 ~dK~~~k~~l~~~Gi~~p~~~~v~~~~----~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~ 261 (519)
+||..+|++++++|||+|++..+.+.+ ++.++.++++||+||||..++||.||+++++.+|+.++++.++.
T Consensus 158 ~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~----- 232 (386)
T 3e5n_A 158 MDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALA----- 232 (386)
T ss_dssp HBHHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTT-----
T ss_pred hCHHHHHHHHHHCCCCCCCEEEEeCcccchhhHHHHHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHh-----
Confidence 999999999999999999999998877 67778889999999999999999999999999999999998863
Q ss_pred CCCCcEEEEeccCCcEEEEEEEEeCC-eeEEeccccccccccCCCCCCCCCC-ceEEecCCCCCHHHHHHHHHHHHHHHH
Q 010065 262 SAGCRVIIEEFLEGEEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNTGG-MGAYSPAPVLTKELQSVVMESIILPTV 339 (519)
Q Consensus 262 ~~~~~~lvEe~I~G~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~P~~~l~~~~~~~i~~~a~~~~~ 339 (519)
.+..+|||+||+|+|++|.++.++. .+.+.........+++++.+|..++ +..++|++ ++++..+++++.+ .
T Consensus 233 -~~~~vlVEe~I~G~E~~v~vl~~~~~~~~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a----~ 306 (386)
T 3e5n_A 233 -YDHKVLVEAAVAGREIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPAD-IDAQTQQRIQQIA----V 306 (386)
T ss_dssp -TCSEEEEEECCCSEEEEEEEECSSSCEEEEEEEECC-----------------CEESSCS-SCHHHHHHHHHHH----H
T ss_pred -CCCcEEEEcCCCCeEEEEEEEeCCCceEEEeEEEEeCCcccchhcccCCCCCeEEEECCC-CCHHHHHHHHHHH----H
Confidence 5678999999999999999997654 3333334444445788888887644 78889999 9999998888877 4
Q ss_pred HHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 340 KGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 340 ~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
++++++|+. |++++||+++++| ++|++|||||||+|.+ +++|. .|+|+.+++.+++.
T Consensus 307 ~~~~aLg~~--G~~~vDf~~~~dg-~~~vlEiN~~PG~t~~-S~~p~~~~~~Gi~~~~li~~li~ 367 (386)
T 3e5n_A 307 QAYQALGCA--GMARVDVFLCADG-RIVINEVNTLPGFTRI-SVYPKLWQASGLDYRGLITRLIE 367 (386)
T ss_dssp HHHHHHTCC--SEEEEEEEECTTC-CEEEEEEESSCCCSTT-CHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHhCCc--cEEEEEEEEECCC-cEEEEEeECCCCCCcc-CHHHHHHHHhCCCHHHHHHHHHH
Confidence 688999987 9999999999887 8999999999999887 66664 39999998877654
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=375.67 Aligned_cols=310 Identities=20% Similarity=0.215 Sum_probs=229.4
Q ss_pred ccceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCC--ccc--
Q 010065 53 KSSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDA--TCI-- 128 (519)
Q Consensus 53 ~~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~--~~v-- 128 (519)
..++||+|||||.|+||+||+.||.+ +..+|.+. +|+++.+..+..+.|..... ..+
T Consensus 8 ~~~~~v~vl~GG~S~E~~vS~~sa~~------------------v~~~l~~~-~~~v~~i~i~~~g~w~~~~~~~~~~~~ 68 (373)
T 3lwb_A 8 DRRVRVAVVFGGRSNEHAISCVSAGS------------------ILRNLDSR-RFDVIAVGITPAGSWVLTDANPDALTI 68 (373)
T ss_dssp TTCEEEEEEEEC-----CHHHHHHHH------------------HHHHSCTT-TEEEEEEEECTTCCEEEECCC------
T ss_pred cCCcEEEEEecCCCCChhhHHHHHHH------------------HHHHhhhc-CceEEEEEecCCCCeEecCchhhhhhc
Confidence 36789999999999999999999877 44555433 56655554333332221100 000
Q ss_pred -----cCCCCCCHHHH-HH-------H---------HHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHH
Q 010065 129 -----PDLDVLDGDAV-IS-------F---------CRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEA 181 (519)
Q Consensus 129 -----~~~d~~d~~~l-~~-------~---------~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~ 181 (519)
+.++......+ +. + ....++|+|||. +||+.+|++ |+.+|+||+|+++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vfp~lhG~~gEdg~iq~l---le~~gip~vG~~~~a 145 (373)
T 3lwb_A 69 TNRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGL---LELAGVPYVGAGVLA 145 (373)
T ss_dssp ----------------------------CCCCTTHHHHHHTCSEEEECCEETTEECCHHHHH---HHHHTCCBSSSCHHH
T ss_pred ccccccccccccccceEeeccccccceeeccccccccccCCccEEEECCCCCCCccHHHHHH---HHHcCCCccCCcHHH
Confidence 00000000000 00 0 012369999993 689977666 999999999999999
Q ss_pred HHHhcCHHHHHHHHHHcCCCCCCeeecCCHHH--HHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhcc
Q 010065 182 AALEGSKNFMKNLCDKYGIPTAKYKTFTDPNA--AKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNA 259 (519)
Q Consensus 182 ~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~--~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~ 259 (519)
+++++||..+|++|+++|||+|++..+.+.++ ..+..++++||+||||.+++||.||+++++.+||.++++.++.
T Consensus 146 ~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~--- 222 (373)
T 3lwb_A 146 SAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARR--- 222 (373)
T ss_dssp HHHHHBHHHHHHHHHHTTCCBCCEEEECTTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHT---
T ss_pred HHHHcCHHHHHHHHHHcCcCCCCEEEEECcccchhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh---
Confidence 99999999999999999999999999987664 1334678999999999999999999999999999999998874
Q ss_pred CCCCCCcEEEEeccCCcEEEEEEEEeCCe---eEEecccccc--cc----ccCCCCCCCCCCceEEecCCCCCHHHHHHH
Q 010065 260 FGSAGCRVIIEEFLEGEEASFFALVDGEN---AIPLESAQDH--KR----VGDGDTGPNTGGMGAYSPAPVLTKELQSVV 330 (519)
Q Consensus 260 ~~~~~~~~lvEe~I~G~E~sv~~l~dg~~---~~~~~~~~~~--~~----~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i 330 (519)
.+..+|||+||+|+|++|.++.++.. +.+....... .. +++++.+|..+...+++|++ ++++..+++
T Consensus 223 ---~~~~vlVEe~I~G~E~~v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i 298 (373)
T 3lwb_A 223 ---HDPKVIVEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAK-VDDQVAEAI 298 (373)
T ss_dssp ---TCSSEEEEECCEEEEEEEEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCC-CCHHHHHHH
T ss_pred ---cCCCEEEeCCCCCeEEEEEEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCC-CCHHHHHHH
Confidence 56899999999999999999986542 2222222222 23 78888888888888889999 999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 331 MESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 331 ~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
++.+ .++++++|+. |++|+||+++++| + ||+|||||||++.. +++|. +|+|+.+++.+++.
T Consensus 299 ~~~a----~~~~~aLg~~--G~~~vDf~~~~dg-~-~vlEIN~~PG~t~~-S~~p~~~~a~Gi~~~~li~~li~ 363 (373)
T 3lwb_A 299 RQLA----IRAFAAIDCR--GLARVDFFLTDDG-P-VINEINTMPGFTTI-SMYPRMWAASGVDYPTLLATMIE 363 (373)
T ss_dssp HHHH----HHHHHHTTCC--SEEEEEEEEETTE-E-EEEEEESSCCCSTT-SHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHH----HHHHHHhCCc--cEEEEEEEEECCC-C-EEEEecCCCCCCcc-cHHHHHHHHhCCCHHHHHHHHHH
Confidence 8877 4688999987 9999999999988 6 99999999999876 55543 49999888766654
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=375.70 Aligned_cols=307 Identities=19% Similarity=0.160 Sum_probs=233.1
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC--Ccccc--
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD--ATCIP-- 129 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~--~~~v~-- 129 (519)
++|||+|||||.|+||+||+.||.+ ++.+|.+. |++++.++.+..+.+.... ...+.
T Consensus 2 ~~~~v~vl~GG~s~e~~vSl~sa~~------------------v~~al~~~-g~~v~~i~~~~~~~~~~~~~~~~~~~~~ 62 (346)
T 3se7_A 2 SHMKIGIIFGGVSEEHDISVKSARE------------------VATHLGTG-VFEPFYLGITKSGAWQLCDGPGENWEDG 62 (346)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHH------------------HHHHSCTT-TEEEEEEEECTTSCEEEESCSSSSSSSS
T ss_pred CCCEEEEEeeecCCCccHHHHHHHH------------------HHHHhccc-CCEEEEEEECCCCCEEeccchhhhhccc
Confidence 5899999999999999999999876 67777665 8998888766444332110 00000
Q ss_pred -------CCCCCCHHHHHH----HHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHH
Q 010065 130 -------DLDVLDGDAVIS----FCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKN 193 (519)
Q Consensus 130 -------~~d~~d~~~l~~----~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~ 193 (519)
..+..+. .+.. ..++.++|+||| .+|++.++++ |+.+|+||+|+++.++.+++||..+++
T Consensus 63 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~v~~~lhG~~gedg~iq~~---le~~gip~~g~~~~a~~~~~dK~~~k~ 138 (346)
T 3se7_A 63 NCRPAVLSPDRSVH-GLLVLEQGKYETIRLDLVLPVLHGKLGEDGAIQGL---LELSGIPYVGCDIQSSALCMDKSLTYL 138 (346)
T ss_dssp CCEEEEECCCTTTC-EEEEEETTEEEEEECSEEEECCCSTTTTSSHHHHH---HHHHCCCBSSCCHHHHHHHHSHHHHHH
T ss_pred ccccceeccCccCc-cceecccccccccCCCEEEEccCCCCCCChHHHHH---HHHcCCCeeCcCHHHHHHHhCHHHHHH
Confidence 0000000 0000 012457999999 2688876655 999999999999999999999999999
Q ss_pred HHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEecc
Q 010065 194 LCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL 273 (519)
Q Consensus 194 ~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I 273 (519)
+++++|||+|++..+.+.+ ..+.+.++||+||||..+++|.||.++++.+|+.++++.++. .+..+|||+||
T Consensus 139 ~l~~~Gip~p~~~~~~~~~--~~~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEe~I 210 (346)
T 3se7_A 139 VARSAGIATPNFWTVTADE--KIPTDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAARE------YDSKVLIEEAV 210 (346)
T ss_dssp HHHHTTCBCCCEEEEETTS--CCCTTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTT------TCSEEEEEECC
T ss_pred HHHHcCcCcCCEEEEcCcH--HHHHHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHh------CCCcEEEEeCc
Confidence 9999999999999988765 334467899999999999999999999999999999998863 46789999999
Q ss_pred CCcEEEEEEEEeCCeeEEec--cccccccccCC----CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 010065 274 EGEEASFFALVDGENAIPLE--SAQDHKRVGDG----DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGC 347 (519)
Q Consensus 274 ~G~E~sv~~l~dg~~~~~~~--~~~~~~~~~~~----~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~ 347 (519)
+|+|++|.++.+++....++ .......++++ +.+|..+.....+|++ ++++..+++++.+ .++++++|+
T Consensus 211 ~G~E~~v~vl~~~~~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~-l~~~~~~~i~~~a----~~~~~~lg~ 285 (346)
T 3se7_A 211 IGTEIGCAVMGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD-ISTTSRSLVQDTA----KAVYRALGC 285 (346)
T ss_dssp CSEEEEEEEEEETTEEEECCCEEECCC--------------CGGGSCEESSCC-CCHHHHHHHHHHH----HHHHHHHTC
T ss_pred CCEEEEEEEEecCCCeEEEeeEEEecCCCCcCcccchhccccCCCeeEEeCCC-CCHHHHHHHHHHH----HHHHHHhCC
Confidence 99999999998765333222 23334468888 8889888888889998 9999988888877 468889998
Q ss_pred CeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH----HhCCCHHHHHHHHHh
Q 010065 348 KFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV----RLESDLAEVLLAACR 400 (519)
Q Consensus 348 ~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~----~~G~d~~~~~i~~~~ 400 (519)
. |++++||+++++| ++|++|||+|||++.. ++++ .+|+|+.+++.+++.
T Consensus 286 ~--G~~~vD~~~~~~g-~~~vlEiN~rPG~t~~-s~~p~~~~~~G~~~~~l~~~li~ 338 (346)
T 3se7_A 286 R--GLSRVDLFLTEDG-KVVLNEVNTFPGMTSY-SRYPRMMTAAGLSRADVIDRLVS 338 (346)
T ss_dssp C--EEEEEEEEECTTS-CEEEEEEESSCCCSTT-CHHHHHHHHTTCCHHHHHHHHHH
T ss_pred c--eEEEEEEEEeCCC-CEEEEEEeCCCCCCcc-cHHHHHHHHhCCCHHHHHHHHHH
Confidence 8 9999999999886 8999999999999776 4444 349999998877754
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=358.53 Aligned_cols=387 Identities=18% Similarity=0.192 Sum_probs=278.5
Q ss_pred CCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-C-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCC
Q 010065 79 AGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-I-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPE 156 (519)
Q Consensus 79 ~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E 156 (519)
+..+++|||+|+|..+..+++++++. |+++++++..+.. . ...++ ..+ .++..|.+.++++++++++|+|+++++
T Consensus 4 m~~~~~ilI~g~g~~~~~~~~a~~~~-G~~~v~v~~~~~~~~~~~~ad-~~~-~~~~~d~~~l~~~~~~~~~d~v~~~~~ 80 (403)
T 4dim_A 4 MYDNKRLLILGAGRGQLGLYKAAKEL-GIHTIAGTMPNAHKPCLNLAD-EIS-YMDISNPDEVEQKVKDLNLDGAATCCL 80 (403)
T ss_dssp --CCCEEEEECCCGGGHHHHHHHHHH-TCEEEEEECSSCCHHHHHHCS-EEE-ECCTTCHHHHHHHTTTSCCSEEECCSC
T ss_pred ccCCCEEEEECCcHhHHHHHHHHHHC-CCEEEEEcCCCCCCcchhhCC-eEE-EecCCCHHHHHHHHHHcCCCEEEeCCc
Confidence 34568999999998778889999887 9999988642211 1 11111 222 467788999999999999999999654
Q ss_pred hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 010065 157 APLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGK 236 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~ 236 (519)
+..+..+++.++.+|+| |++++++.+++||..++++++++|||+|++..+.+.+++.+++++++||+|+||..++||+
T Consensus 81 ~~~~~~~a~~~~~~gl~--g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~ 158 (403)
T 4dim_A 81 DTGIVSLARICDKENLV--GLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENLKLPVIVKATDLQGSK 158 (403)
T ss_dssp STTHHHHHHHHHHHTCS--SCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSHHHHHHHHHTSCSSEEEECSCC----
T ss_pred chhHHHHHHHHHHcCcC--CCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCC
Confidence 44445678888999997 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEE
Q 010065 237 GVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAY 316 (519)
Q Consensus 237 GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (519)
||+++++.+|+.++++.+... ..++.++|||||+|+|++++++..++.+..+...... .+.. ......++.
T Consensus 159 Gv~~v~~~~el~~~~~~~~~~----~~~~~~lvEe~i~g~e~sv~~~~~~g~~~~~~~~~~~--~~~~---~~~~~~~~~ 229 (403)
T 4dim_A 159 GIYIAKKEEEAIDGFNETMNL----TKRDYCIVEEFIEGYEFGAQAFVYKNDVLFVMPHGDE--TYMS---HTAVPVGHY 229 (403)
T ss_dssp -CEEESSHHHHHHHHHHHHHH----CSSSCCEEEECCCSEEEEEEEEEETTEEEEEEEEEEE--EEES---SSEEEEEEE
T ss_pred CEEEECCHHHHHHHHHHHHhc----CcCCcEEEEEccCCcEEEEEEEEECCEEEEEEEecce--eccC---CCCcceeEE
Confidence 999999999999999988754 2347899999999999999999744434433322211 1111 113345778
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHH-HHHhCCCHHHHH
Q 010065 317 SPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVL-MVRLESDLAEVL 395 (519)
Q Consensus 317 ~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~-~~~~G~d~~~~~ 395 (519)
.|+. ++++..+++.+.+ .+++.++|+.. |++|+||+++++ ++||+|+|||+|++.++.+ ...+|+|+.+++
T Consensus 230 ~p~~-l~~~~~~~l~~~a----~~~~~~lg~~g-g~~~ve~~~~~~--~~~~iEiN~R~~~~~~~~~~~~~~G~d~~~~~ 301 (403)
T 4dim_A 230 VPLD-VKDDIIEKTKTEV----KKAIKALGLNN-CAVNVDMILKDN--EVYIIELTGRVGANCLPELVEINYGIEYYKMI 301 (403)
T ss_dssp ESCC-SCHHHHHHHHHHH----HHHHHHHTCCS-EEEEEEEEEETT--EEEEEEEESSCCSTTHHHHHHHHHTSCHHHHH
T ss_pred eCCC-CCHHHHHHHHHHH----HHHHHHcCCCC-CcEEEEEEEECC--cEEEEEEcCCCCCCcHHHHHHHHhCcCHHHHH
Confidence 8988 8999888888876 46788999872 499999999854 5999999999998765433 345699999999
Q ss_pred HHHHhCCCC-CCCc-c-cCCCcE-EEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcE----EecC
Q 010065 396 LAACRGELT-GVTL-N-WSPGSA-MVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNF----IATG 467 (519)
Q Consensus 396 i~~~~g~~~-~~~~-~-~~~~~a-~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~ 467 (519)
+++++|... +... . ..+++. .++.+..+ .++.. ..+.+.+. ..+.+..+.... ..|.. .++.
T Consensus 302 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~i---~~~~~~~~---~~~~v~~~~~~~---~~G~~v~~~~d~~ 371 (403)
T 4dim_A 302 ASMAISENPLVFWSQKSKENKAGLARMIIETE-KSGIL---KEILNSNA---KDDDIVEITFFK---EENDEIKKFENSN 371 (403)
T ss_dssp HHHHTTCCTHHHHTTCCSSCCEEEEEEECCSS-CCEEE---EEEEECCC---CCTTEEEEEECC---CTTCEECCSCSGG
T ss_pred HHHHcCCCccccccccccccccceEEEEEecC-CCeEE---Eeeecccc---cCCCeEEEEEEc---CCCCEeCCCCCCC
Confidence 999999843 1111 1 122322 22222222 12221 12332221 122332221111 23332 3456
Q ss_pred CeEEEEEEecCCHHHHHHHHHHHhhccccC
Q 010065 468 GRVLGVTAKGKDVEEAQDRAYLAVEEINWP 497 (519)
Q Consensus 468 ~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~ 497 (519)
+|+|+|++.|+|.++|.++++++++.++++
T Consensus 372 ~~~g~vi~~~~~~~~a~~~~~~~~~~~~i~ 401 (403)
T 4dim_A 372 DCIGQIIVKEETLDKCKDKLDVIINNINII 401 (403)
T ss_dssp GCCEEEEEEESSHHHHHHHHHHHHTTEEEE
T ss_pred ceeEEEEEEeCCHHHHHHHHHHHhccEEEE
Confidence 799999999999999999999999998763
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=351.70 Aligned_cols=378 Identities=17% Similarity=0.181 Sum_probs=281.2
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
.+++|||+|+|.....+++++++. |++++.+++..... ....+ ..+ ..+..|.+.++++++++++|+|+++.|+..
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~-G~~v~~~~~~~~~~~~~~~d-~~~-~~~~~d~~~l~~~~~~~~~d~v~~~~e~~~ 86 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRL-GVEVIAVDRYADAPAMHVAH-RSH-VINMLDGDALRRVVELEKPHYIVPEIEAIA 86 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTT-TCEEEEEESSTTCGGGGGSS-EEE-ECCTTCHHHHHHHHHHHCCSEEEECSSCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCCCCchhhhcc-ceE-ECCCCCHHHHHHHHHHcCCCEEEECCCcCC
Confidence 458999999985555677787765 99988887542111 11111 222 456778999999999999999999988766
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcE
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGV 238 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l-~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV 238 (519)
.+ +++.++.+|++ +|++++++.+++||..+++++ +++|||+|++..+.+.+++.+++++++||+|+||..+++|+||
T Consensus 87 ~~-~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv 164 (391)
T 1kjq_A 87 TD-MLIQLEEEGLN-VVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQ 164 (391)
T ss_dssp HH-HHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHCSSEEEEESCC---CCC
T ss_pred HH-HHHHHHhCCCC-cCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCCe
Confidence 53 56778999994 589999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEe
Q 010065 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYS 317 (519)
Q Consensus 239 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (519)
.++++.+|+.++++.+.... ++ .+..++|||||+ |.|+++.++++++....+.........+++ ...+.
T Consensus 165 ~~v~~~~el~~~~~~~~~~~-~~-~~~~~lvEe~i~~g~E~sv~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~ 234 (391)
T 1kjq_A 165 TFIRSAEQLAQAWKYAQQGG-RA-GAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDY--------RESWQ 234 (391)
T ss_dssp EEECSGGGHHHHHHHHHHHS-GG-GCCCEEEEECCCCSEEEEEEEEEETTEEEECCCEEEEEETTEE--------EEEEE
T ss_pred EEECCHHHHHHHHHHHHhhc-cc-CCCCEEEEEecCCCeEEEEEEEEeCCCeEEccCcceEEECCEE--------EEEEe
Confidence 99999999999998876421 00 246899999999 799999999875543322221111111221 13466
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHH
Q 010065 318 PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLA 397 (519)
Q Consensus 318 P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~ 397 (519)
|++ ++++..+++.+.+ .+++.++|+. |++++||++++++ +|++|+|||+|++.++.+.. .|+|+++++++
T Consensus 235 p~~-l~~~~~~~~~~~a----~~~~~~lg~~--G~~~ve~~~~~~~--~~viEiN~R~~~~~~~~~~~-~g~~~~~~~~~ 304 (391)
T 1kjq_A 235 PQQ-MSPLALERAQEIA----RKVVLALGGY--GLFGVELFVCGDE--VIFSEVSPRPHDTGMVTLIS-QDLSEFALHVR 304 (391)
T ss_dssp CCC-CCHHHHHHHHHHH----HHHHHHHCSS--EEEEEEEEEETTE--EEEEEEESSCCGGGGGHHHH-BSSCHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHH----HHHHHHcCCe--eEEEEEEEEeCCc--EEEEEEECCCCCCcceeeee-cCcCHHHHHHH
Confidence 888 8988888887766 4677888865 9999999999875 99999999999887755553 49999999999
Q ss_pred HHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEec
Q 010065 398 ACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKG 477 (519)
Q Consensus 398 ~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g 477 (519)
+++|.+.. .+.+...+++.++++.. |+ .+..+.+++++.. ++..+...+. .+ .+.+.++|+|++.|
T Consensus 305 ~~~G~~~~-~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~--pg~~v~~~~~----~~--~~~~~~lg~v~~~g 370 (391)
T 1kjq_A 305 AFLGLPVG-GIRQYGPAASAVILPQL--TS---QNVTFDNVQNAVG--ADLQIRLFGK----PE--IDGSRRLGVALATA 370 (391)
T ss_dssp HHTTCCCC-CCCBCSSEEEEEECCEE--EE---SSCEEECGGGSCB--TTEEEEECCC----CC--EEEECCCEEEEEEC
T ss_pred HHcCCCCC-CccccCcEEEEEEEccC--cc---cccccccHHHHhC--CCCEEEEecc----CC--CCCCCeEEEEEEec
Confidence 99998543 23344334455554432 22 2234556665543 4554443322 12 34567899999999
Q ss_pred CCHHHHHHHHHHHhhccccC
Q 010065 478 KDVEEAQDRAYLAVEEINWP 497 (519)
Q Consensus 478 ~t~~ea~~~a~~~~~~i~~~ 497 (519)
+|.++|+++++++++.|+++
T Consensus 371 ~~~~~a~~~~~~~~~~i~~~ 390 (391)
T 1kjq_A 371 ESVVDAIERAKHAAGQVKVQ 390 (391)
T ss_dssp SSHHHHHHHHHHHHHHCEEE
T ss_pred CCHHHHHHHHHHHHhhheec
Confidence 99999999999999999875
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=356.30 Aligned_cols=289 Identities=17% Similarity=0.131 Sum_probs=223.8
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCC
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDV 133 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~ 133 (519)
.++||+||+||.|+||+||+.|+.. ++.+|++. |++++.+++.+. ..
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~------------------v~~al~~~-g~~v~~i~~~~~---------~~----- 58 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRL------------------VLQGLRDA-GIDAHPFDPAER---------PL----- 58 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHH------------------HHHHHHHT-TCEEEEECTTTS---------CT-----
T ss_pred hcceEEEEECCCCCcceeeHHHHHH------------------HHHHHHHC-CCEEEEEeCCCc---------hH-----
Confidence 4689999999999999999999865 78888877 999988853211 00
Q ss_pred CCHHHHHHHHHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeec
Q 010065 134 LDGDAVISFCRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF 208 (519)
Q Consensus 134 ~d~~~l~~~~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v 208 (519)
. ..++.++|+||+. +|++.+++ .++.+|+|++|++++++.+++||..++++|+++|||+|++..+
T Consensus 59 ---~----~l~~~~~D~v~~~~hg~~ge~~~~~~---~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~ 128 (317)
T 4eg0_A 59 ---S----ALKDEGFVRAFNALHGGYGENGQIQG---ALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETV 128 (317)
T ss_dssp ---T----HHHHTTCCEEEECCCSGGGTSSHHHH---HHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEE
T ss_pred ---H----HhhhcCCCEEEEcCCCCCCchHHHHH---HHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEE
Confidence 1 1245689999992 57776555 4999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH----HHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEE
Q 010065 209 TDPNAAKQYI----QEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFAL 283 (519)
Q Consensus 209 ~~~~~~~~~~----~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l 283 (519)
.+.+++.+++ +.++||+||||..+++|.||.++++.+|+.++++.++. .+..+||||||+ |+|++|.++
T Consensus 129 ~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~i~~G~E~~v~vl 202 (317)
T 4eg0_A 129 MRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT------HDKIVIVEKSIEGGGEYTACIA 202 (317)
T ss_dssp ETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTT------TCSEEEEEECCCSSEEEEEEEE
T ss_pred ECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------CCCeEEEEcCCCCCcEEEEEEE
Confidence 8887776666 78999999999999999999999999999999988753 467899999999 999999988
Q ss_pred EeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCC
Q 010065 284 VDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKS 363 (519)
Q Consensus 284 ~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g 363 (519)
.+. ..+.........+++++.++..++....+|+. ++++..+++++.+ .++++++|++ |++++||+++++|
T Consensus 203 ~~~--~~~~~~i~~~~~~~~~~~k~~~g~~~~~~P~~-l~~~~~~~l~~~a----~~~~~~lg~~--G~~~vD~~~~~~g 273 (317)
T 4eg0_A 203 GDL--DLPLIKIVPAGEFYDYHAKYVANDTQYLIPCG-LPAEQETELKRIA----RRAFDVLGCT--DWGRADFMLDAAG 273 (317)
T ss_dssp TTC--CCCCEEEEC---------------CEEESSCS-SCHHHHHHHHHHH----HHHHHTTTCC--SEEEEEEEECTTC
T ss_pred CCc--ccceEEEeeCCceechhhcccCCCeeEEcCCC-CCHHHHHHHHHHH----HHHHHHhCCC--ceEEEEEEEeCCC
Confidence 542 22222223334578888888888888899998 9999888888877 4688899987 9999999999876
Q ss_pred CceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHhCC
Q 010065 364 GLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACRGE 402 (519)
Q Consensus 364 ~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~g~ 402 (519)
++||+|||||||++.. ++++. .|+++.+++.+++...
T Consensus 274 -~~~vlEiN~~pg~t~~-s~~p~~~~~~G~~~~~l~~~li~~a 314 (317)
T 4eg0_A 274 -NAYFLEVNTAPGMTDH-SLPPKAARSIGIGYSELVVKVLSLT 314 (317)
T ss_dssp -CEEEEEEESSCCCSTT-SHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred -CEEEEEeeCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8999999999999876 55554 3999999999887654
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=361.90 Aligned_cols=304 Identities=17% Similarity=0.149 Sum_probs=238.0
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHH-HhcCCCcEEEEecCCCCCcCCC----------
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYAL-KRSHSCDAVFCAPGNAGISNSG---------- 123 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l-~~~~g~~~v~~~~~~~~~~~~~---------- 123 (519)
+|||+||+||.|+||+||+.||.+ +..+| .+. |++++.++.+..+.+...
T Consensus 3 k~~v~vl~gG~s~E~~vSl~s~~~------------------v~~al~~~~-g~~v~~i~~~~~~~~~~~~~~~~~~~~~ 63 (377)
T 1ehi_A 3 KKRVALIFGGNSSEHDVSKRSAQN------------------FYNAIEATG-KYEIIVFAIAQNGFFLDTESSKKILALE 63 (377)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHH------------------HHHHHHHHS-SEEEEEEEECTTSCBCCHHHHHHHHTTC
T ss_pred CcEEEEEeCCCCCCcceeHHHHHH------------------HHHHhCccc-CcEEEEEEEcCCCCEEeccccccccccc
Confidence 689999999999999999999865 68888 666 999998875533322210
Q ss_pred CCccc-----------cCCCCCCHHHHHHHHHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcC
Q 010065 124 DATCI-----------PDLDVLDGDAVISFCRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGS 187 (519)
Q Consensus 124 ~~~~v-----------~~~d~~d~~~l~~~~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~d 187 (519)
....+ ..+++. .+.. +..++|+|||. +|++.+++ .++.+|+|++|++++++.+++|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~D~v~~~~~g~~gedg~~~~---lle~~gip~~G~~~~a~~~~~D 135 (377)
T 1ehi_A 64 DEQPIVDAFMKTVDASDPLARI---HALK--SAGDFDIFFPVVHGNLGEDGTLQG---LFKLLDKPYVGAPLRGHAVSFD 135 (377)
T ss_dssp CHHHHHHHHHTSCCTTCTTCTT---GGGG--TTCCCSEEEEECCSTTTSSSHHHH---HHHHTTCCBSSCCHHHHHHHHS
T ss_pred chhhhccccccccccccccCcc---hhhc--cccCCCEEEEecCCCCCcCHHHHH---HHHHcCCCEeCcCHHHHHHHcC
Confidence 00000 011111 1111 13579999992 57775544 4999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHH----HHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCC
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNA----AKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSA 263 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~----~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~ 263 (519)
|..++++|+++|||+|++..+.+.++ +.++.+.++||+||||..++||.||.++++.+|+.++++.++. .
T Consensus 136 K~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~ 209 (377)
T 1ehi_A 136 KALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQ------Y 209 (377)
T ss_dssp HHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTT------T
T ss_pred HHHHHHHHHHcCCCCCCEEEEeccccchHHHHHHHHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHh------c
Confidence 99999999999999999999987754 6666778999999999999999999999999999999998763 4
Q ss_pred CCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccc-----cccccCCCCCCCCC-CceEEecCCCCCHHHHHHHHHHHH
Q 010065 264 GCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQD-----HKRVGDGDTGPNTG-GMGAYSPAPVLTKELQSVVMESII 335 (519)
Q Consensus 264 ~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~-----~~~~~~~~~~~~~g-~~~~~~P~~~l~~~~~~~i~~~a~ 335 (519)
+..+|||+||+| +|++|.++.+++ .+++...... ...++++..+|..+ ++.+++|++ ++++..+++++.+
T Consensus 210 ~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~-l~~~~~~~i~~~a- 287 (377)
T 1ehi_A 210 DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMA- 287 (377)
T ss_dssp CSCEEEEECCCCSCEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC-CCHHHHHHHHHHH-
T ss_pred CCcEEEEcCCCCCceEEEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCC-CCHHHHHHHHHHH-
Confidence 578999999999 999999998664 3443333322 34577777777777 678889999 9999888888876
Q ss_pred HHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH----HHhCCCHHHHHHHHHh
Q 010065 336 LPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM----VRLESDLAEVLLAACR 400 (519)
Q Consensus 336 ~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~----~~~G~d~~~~~i~~~~ 400 (519)
.++++++|+. |++|+||+++++| ++||+|||||||++.+ +++ ..+|+|+.+++.+++.
T Consensus 288 ---~~~~~alg~~--G~~~vD~~~~~~g-~~~vlEiN~rpg~t~~-s~~p~~~~a~G~~~~~l~~~li~ 349 (377)
T 1ehi_A 288 ---LDAYKVLNLR--GEARMDFLLDENN-VPYLGEPNTLPGFTNM-SLFKRLWDYSDINNAKLVDMLID 349 (377)
T ss_dssp ---HHHHHHTTCC--EEEEEEEEECTTC-CEEEEEEESSCCCSTT-CGGGTGGGGGTCCHHHHHHHHHH
T ss_pred ---HHHHHHcCCC--cEEEEEEEEeCCC-CEEEEEEeCCCCCCcc-cHHHHHHHHhCCCHHHHHHHHHH
Confidence 4688999988 9999999999876 7999999999998876 333 3459999777665543
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=361.58 Aligned_cols=391 Identities=19% Similarity=0.229 Sum_probs=281.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC-CC-cCCCCCccccCC------CCCCHHHHHHHHHHcCCcEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA-GI-SNSGDATCIPDL------DVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~-~~-~~~~~~~~v~~~------d~~d~~~l~~~~~~~~id~Vi 152 (519)
+++|||+|+|.....+++++++. |++++.++++ +. .. ...++ ..+ .+ +..|.+.+++++++.++|+|+
T Consensus 2 ~k~ilI~g~g~~~~~~~~a~~~~-G~~vv~v~~~~~~~~~~~~~ad-~~~-~~~p~~~~~~~d~~~l~~~~~~~~~d~v~ 78 (451)
T 1ulz_A 2 VNKVLVANRGEIAVRIIRACKEL-GIPTVAIYNEVESTARHVKLAD-EAY-MIGTDPLDTYLNKQRIINLALEVGADAIH 78 (451)
T ss_dssp CSSEEECCCHHHHHHHHHHHHHH-TCCEEEEECGGGTTCHHHHHSS-EEE-ECCSSTTHHHHCHHHHHHHHHHTTCCEEE
T ss_pred CceEEEECCcHHHHHHHHHHHHc-CCeEEEEechhhcccchhhhCc-EEE-EcCCCcccccCCHHHHHHHHHHcCCCEEE
Confidence 36799999987777788888876 9999988643 21 11 11111 111 12 234678999999999999999
Q ss_pred EC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEE
Q 010065 153 VG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 153 ~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~V 226 (519)
++ +|+.. +++.++.+|+|++|++++++.+++||..++++|+++|||+|++. .+++.+++.+++++++||+|
T Consensus 79 ~~~g~~~e~~~---~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~Pvv 155 (451)
T 1ulz_A 79 PGYGFLAENAE---FAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVL 155 (451)
T ss_dssp CCSSTTTTCHH---HHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEE
T ss_pred ECCCccccCHH---HHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEE
Confidence 96 56653 46678999999999999999999999999999999999999997 78899999999999999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEecccccccccc
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVG 302 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~ 302 (519)
+||..++||+||+++++.+|+.++++.++.. ..++ +..++|||||+| +|+++.++.++ +.+..+.... . ...
T Consensus 156 vKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~-~-~~~ 231 (451)
T 1ulz_A 156 LKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFG--RGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERD-C-SIQ 231 (451)
T ss_dssp EEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTS--CCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEE-E-EEE
T ss_pred EEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcC--CCeEEEEEcccCCeEEEEEEEEcCCCCEEEEeeee-c-ccc
Confidence 9999999999999999999999999887642 1222 468999999999 89999999864 3344333110 0 000
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
. + ........|++.++++..+++.+.+ .++++++|+. |++++||+++++| ++||+|+|||++++.. .
T Consensus 232 ~-~----~~~~~~~~P~~~l~~~~~~~i~~~a----~~~~~~lg~~--G~~~ve~~~~~~g-~~~viEiN~R~~~~~~-~ 298 (451)
T 1ulz_A 232 R-R----NQKLVEIAPSLILTPEKREYYGNIV----TKAAKEIGYY--NAGTMEFIADQEG-NLYFIEMNTRIQVEHP-V 298 (451)
T ss_dssp E-T----TEEEEEEESCSSCCHHHHHHHHHHH----HHHHHHTTCC--EEEEEEEEECTTC-CEEEEEEECSCCTTHH-H
T ss_pred c-c----cccceeECCcccCCHHHHHHHHHHH----HHHHHHcCCC--cceEEEEEEeCCC-CEEEEEeeCCCCccch-H
Confidence 0 0 0011334677658888888877765 4677888876 9999999999876 7999999999988643 3
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCC---CcccCCCcEEEEEEecCC----CCCCCCCCcccccchhhhccCCCeEEEEeee
Q 010065 383 LMVRLESDLAEVLLAACRGELTGV---TLNWSPGSAMVVVMASKG----YPGSYEKGSEIQNLEEAEQVAPSVKIFHAGT 455 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~~~~~---~~~~~~~~a~~~~l~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 455 (519)
+...+|+|+.++++++++|...+. .+.+. +.++...+.+.. ++...+ .+..++.. ..+++++... .
T Consensus 299 ~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~p~~g---~i~~~~~~--~~~~v~~~~~-~ 371 (451)
T 1ulz_A 299 SEMVTGIDIVKWQIKIAAGEPLTIKQEDVKFN-GYAIECRINAEDPKKNFAPSTR---VIERYYVP--GGFGIRVEHA-A 371 (451)
T ss_dssp HHHHHCCCHHHHHHHHHTTCCCCCCGGGCCCC-SEEEEEEEESEEGGGTTEECCS---BCCSEECC--CSTTEEEEEC-C
T ss_pred HHHHhCCCHHHHHHHHHcCCCCCCccccCCCc-eEEEEEeccccCcccCcCCCCc---eeceEECC--CCCCcccccC-c
Confidence 444569999999999999984332 12233 344443333221 110111 12222210 0123433110 0
Q ss_pred eecCCCcEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCeeecccccc
Q 010065 456 ALDADGNFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGW 507 (519)
Q Consensus 456 ~~~~~g~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~ 507 (519)
..|... ..++++|+|++.|+|.++|+++++++++.++++| ||+|||.
T Consensus 372 ---~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g--~~~~i~~ 420 (451)
T 1ulz_A 372 ---ARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITG--VKTTIPL 420 (451)
T ss_dssp ---CTTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEECS--SCCSHHH
T ss_pred ---cCCCEecccccchheEEEEECCCHHHHHHHHHHHHhhcEEeC--ccCCHHH
Confidence 122211 2467899999999999999999999999999999 9999994
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=357.44 Aligned_cols=393 Identities=21% Similarity=0.211 Sum_probs=281.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC-CC-cCCCCCccc--c---CCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA-GI-SNSGDATCI--P---DLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~-~~-~~~~~~~~v--~---~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+++|||+|+|.....+++++++. |++++.++++ +. .. ...++.... + ..+..|.+.++++++++++|+|++
T Consensus 2 ~k~ilI~g~g~~~~~~~~a~~~~-G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~~~~~~d~v~~ 80 (449)
T 2w70_A 2 LDKIVIANRGEIALRILRACKEL-GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHP 80 (449)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHH-TCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCCEEEC
T ss_pred CceEEEeCCcHHHHHHHHHHHHc-CCeEEEEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEE
Confidence 36899999987667788888876 9999888643 21 11 111111111 0 115667899999999999999999
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHH-HHHHHHhCCCEE
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAA-KQYIQEEGAPIV 226 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~-~~~~~~~g~P~V 226 (519)
+ +|+.. +++.++.+|+|++|++++++.+++||..++++|+++|||+|++. .+.+.+++ .+++++++||+|
T Consensus 81 ~~g~~~e~~~---~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~g~Pvv 157 (449)
T 2w70_A 81 GYGFLSENAN---FAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVI 157 (449)
T ss_dssp CSSTTTTCHH---HHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHCSSEE
T ss_pred CCCCcccCHH---HHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHhCCcEE
Confidence 6 56653 46679999999999999999999999999999999999999997 78888998 888899999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEecccc-ccccc
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQ-DHKRV 301 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~-~~~~~ 301 (519)
+||..++||+||.++++.+|+.++++.++.. ..++ +..++|||||+| +|+++.++.++ +.+..+.... ...+.
T Consensus 158 vKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~~~~~~~~~~~~ 235 (449)
T 2w70_A 158 IKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFS--NDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRR 235 (449)
T ss_dssp EEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHS--CCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEEEEET
T ss_pred EEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcC--CCcEEEEeccCCCeEEEEEEEEcCCCCEEEEeceecccccC
Confidence 9999999999999999999999999877532 1121 468999999998 89999999863 3344333210 00000
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchH
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~ 381 (519)
+ .......|++.++++..+++.+.+ .++++++|+. |++++||+++++ ++||+|+|||++++..
T Consensus 236 ~--------~~~~~~~p~~~l~~~~~~~i~~~a----~~~~~~lg~~--G~~~ve~~~~~~--~~~viEiN~R~~~~~~- 298 (449)
T 2w70_A 236 H--------QKVVEEAPAPGITPELRRYIGERC----AKACVDIGYR--GAGTFEFLFENG--EFYFIEMNTRIQVEHP- 298 (449)
T ss_dssp T--------EEEEEEESCTTCCHHHHHHHHHHH----HHHHHHHTCC--EEEEEEEEEETT--EEEEEEEECSCCTTHH-
T ss_pred C--------cceeeeCCcccCCHHHHHHHHHHH----HHHHHHcCCC--ceEEEEEEEECC--CEEEEEEECCCCccch-
Confidence 0 012345677668888888887765 4677888876 999999999984 5999999999988643
Q ss_pred HHHHHhCCCHHHHHHHHHhCCCCCCCc-cc-CCCcEEEEEEecCCCCCC-CCCCcccccchhhhccCCCeEE---EEeee
Q 010065 382 VLMVRLESDLAEVLLAACRGELTGVTL-NW-SPGSAMVVVMASKGYPGS-YEKGSEIQNLEEAEQVAPSVKI---FHAGT 455 (519)
Q Consensus 382 ~~~~~~G~d~~~~~i~~~~g~~~~~~~-~~-~~~~a~~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~---~~~~~ 455 (519)
.+...+|+|+.++++++++|...+... .. ..+.++...+.+..+-+. +..+ .+..+.. ...+++.+ ++.|.
T Consensus 299 ~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~--~~~~~v~~~~~~~~g~ 375 (449)
T 2w70_A 299 VTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPSPG-KITRFHA--PGGFGVRWESHIYAGY 375 (449)
T ss_dssp HHHHHHCCCHHHHHHHHHHTCCCSSCGGGCCCCSEEEEEEEECBCTTTCCBCCE-ECCEEEC--CCSTTEEEECCCCTTC
T ss_pred HHHHHhCCCHHHHHHHHHCCCCCCCchhccccceeEEEEeecccCccccCCCCC-EeceEEC--CCCCcEEEEeccccCC
Confidence 334456999999999999998433211 11 124454444333221010 0011 1222110 01133332 12222
Q ss_pred eecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCeeecccccc
Q 010065 456 ALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGW 507 (519)
Q Consensus 456 ~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~ 507 (519)
.. . ...+.++|+|++.|+|.++|+++++++++.++++| ||+|||.
T Consensus 376 ~~--~---~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~~g--~~~~i~~ 420 (449)
T 2w70_A 376 TV--P---PYYDSMIGKLICYGENRDVAIARMKNALQELIIDG--IKTNVDL 420 (449)
T ss_dssp EE--C---SSSCSEEEEEEEEESSHHHHHHHHHHHHHHCEEES--SCCSHHH
T ss_pred Ee--c---cccCcceEEEEEEcCCHHHHHHHHHHHHhhcEEeC--cCCCHHH
Confidence 21 0 13567899999999999999999999999999999 9999994
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=346.85 Aligned_cols=365 Identities=18% Similarity=0.172 Sum_probs=269.6
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVS 161 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~ 161 (519)
++|+|+|+|.....+++++++. |+++++++++.... ...++ ..+ ..+..|.+.+.+++ .++|+|+++.|+.. .
T Consensus 2 ~~Ililg~g~~g~~~~~a~~~~-G~~v~~~~~~~~~~~~~~~~-~~~-~~~~~d~~~l~~~~--~~~d~v~~~~e~~~-~ 75 (380)
T 3ax6_A 2 KKIGIIGGGQLGKMMTLEAKKM-GFYVIVLDPTPRSPAGQVAD-EQI-VAGFFDSERIEDLV--KGSDVTTYDLEHID-V 75 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSTTCTTGGGSS-EEE-ECCTTCHHHHHHHH--HTCSEEEESCSCSC-H
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCCCchhhhCc-eEE-ECCCCCHHHHHHHH--hcCCEEEecccCCC-H
Confidence 6899999995445577888776 99999888653221 11211 122 45777889999988 57999999888765 3
Q ss_pred HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC-CCCcEEE
Q 010065 162 GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA-AGKGVIV 240 (519)
Q Consensus 162 ~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~-gs~GV~~ 240 (519)
.+++.++.+|+| ++++++++.+++||..++++|+++|||+|++..+++.++ ++++++||+|+||..++ +|+||.+
T Consensus 76 ~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~ 151 (380)
T 3ax6_A 76 QTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLES---DVREFGFPVVQKARKGGYDGRGVFI 151 (380)
T ss_dssp HHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSHHH---HHHTTCSSEEEEESCCC-----EEE
T ss_pred HHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCHHH---HHHhcCCCEEEEecCCCCCCCCeEE
Confidence 556778999999 469999999999999999999999999999999998877 56789999999999999 9999999
Q ss_pred eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeC-CeeEEeccccccccccCCCCCCCCCCceEEec
Q 010065 241 AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDG-ENAIPLESAQDHKRVGDGDTGPNTGGMGAYSP 318 (519)
Q Consensus 241 v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P 318 (519)
+++.+|+.++++ ..++|||||+ |+|+++.+++++ +.+..++....+ ++...+. ....+.|
T Consensus 152 v~~~~el~~~~~------------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~~~~~~~---~~~~~~~---~~~~~~p 213 (380)
T 3ax6_A 152 IKNEKDLENAIK------------GETYLEEFVEIEKELAVMVARNEKGEIACYPVVEMY---FDEDANI---CDTVIAP 213 (380)
T ss_dssp ECSGGGGGGCCC------------SSEEEEECCCEEEEEEEEEEECSSCCEEEEEEEEEC--------------CEEEES
T ss_pred ECCHHHHHHHhc------------CCEEEEeccCCCeeEEEEEEECCCCCEEEECCeeee---ecccCCe---eEEEECC
Confidence 999998765432 6899999999 799999999863 234434333322 0000010 1245789
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 319 APVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 319 ~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
++ ++++..+++++.+ .++++++|+. |++++||+++++| ++|++|+|||||++.++. ...+|.|+++.+++.
T Consensus 214 ~~-l~~~~~~~~~~~a----~~~~~~lg~~--G~~~vd~~~~~~g-~~~viEiN~R~~~~~~~~-~~~~~~~~~~~~~~~ 284 (380)
T 3ax6_A 214 AR-IEEKYSKIAREIA----TSVVEALEGV--GIFGIEMFLTKQG-EILVNEIAPRPHNSGHYT-IEACVTSQFEQHIRA 284 (380)
T ss_dssp CS-SCHHHHHHHHHHH----HHHHHHHTCC--EEEEEEEEEETTS-CEEEEEEESSCCGGGTHH-HHHBSSCHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHH----HHHHHHCCCe--EEEEEEEEEeCCC-cEEEEEecCCCCCCceee-hhhccccHHHHHHHH
Confidence 88 8998888887766 4677888875 9999999999877 799999999999987753 345799999999999
Q ss_pred HhCCCCCCCcccCCCcEEEEEEecCCC-CCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEec
Q 010065 399 CRGELTGVTLNWSPGSAMVVVMASKGY-PGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKG 477 (519)
Q Consensus 399 ~~g~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g 477 (519)
++|.......... .+++.++++..+| +... ...+++++ . .+++.+++++... .+.+.++|+|++.|
T Consensus 285 ~~g~~l~~~~~~~-~~~~~~~l~~~~~~~~~~----~~~~~~~~-~-~p~~~~~~~g~~~------~~~~~~lg~v~~~g 351 (380)
T 3ax6_A 285 IMNLPLGSTELLI-PAVMVNLLGEEGYYGKPA----LIGLEEAL-A-IEGLSLHFYGKKE------TRPYRKMGHFTVVD 351 (380)
T ss_dssp HTTCCCCCCCBCS-CEEEEEEEBCTTCCBSEE----EESHHHHH-T-STTEEEEECCCSC------BCBTCEEEEEEEEC
T ss_pred HhCCCCCCccccC-ceEEEEEecccccccccc----cchhHHHh-c-CCCCEEEecCCCC------CCCCCeeEEEEEEe
Confidence 9987433221222 3566777777665 3221 13345554 2 3566777765432 23567788999999
Q ss_pred CCHHHHHHHHHHHhhccccC
Q 010065 478 KDVEEAQDRAYLAVEEINWP 497 (519)
Q Consensus 478 ~t~~ea~~~a~~~~~~i~~~ 497 (519)
+|.++|+++++++++.|+++
T Consensus 352 ~~~~~a~~~~~~~~~~i~~~ 371 (380)
T 3ax6_A 352 RDVERALEKALRAKKILKVV 371 (380)
T ss_dssp SSHHHHHHHHHHHTTTCEEE
T ss_pred CCHHHHHHHHHHHHhhhhhh
Confidence 99999999999999998874
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=346.92 Aligned_cols=371 Identities=17% Similarity=0.194 Sum_probs=282.7
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCC-ccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDA-TCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~-~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
..++|+|+|+|.....+++++++. |++++.++..+......++. ..+ ..+..|.+.+.+++++ +|+|++..|...
T Consensus 23 ~~~~I~ilGgG~lg~~l~~aa~~l-G~~v~~~d~~~~p~~~~ad~~~~~-~~~~~d~~~l~~~a~~--~d~i~~e~e~~~ 98 (403)
T 3k5i_A 23 NSRKVGVLGGGQLGRMLVESANRL-NIQVNVLDADNSPAKQISAHDGHV-TGSFKEREAVRQLAKT--CDVVTAEIEHVD 98 (403)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESTTCTTGGGCCSSCCE-ESCTTCHHHHHHHHTT--CSEEEESSSCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCcHHHhcccccee-ecCCCCHHHHHHHHHh--CCEEEECCCCCC
Confidence 357999999998777788888876 99999888223222333221 222 4577889999998865 788888777654
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecC--CHHHHHHHHHHhCCCEEEEeCCCC-CCC
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT--DPNAAKQYIQEEGAPIVVKADGLA-AGK 236 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~--~~~~~~~~~~~~g~P~VvKP~~g~-gs~ 236 (519)
. .+.+.++. |+| +|++++++.+++||..+|++|+++|||+|++..+. +.+++.++++++|||+|+||..++ +|+
T Consensus 99 ~-~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~P~VvKp~~gg~~g~ 175 (403)
T 3k5i_A 99 T-YALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTMAYDGR 175 (403)
T ss_dssp H-HHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHHCSSEEEEESSSCCTTT
T ss_pred H-HHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHHhCCCEEEEeCCCCcCCC
Confidence 3 45667888 998 68999999999999999999999999999999999 999999999999999999999887 999
Q ss_pred cEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceE
Q 010065 237 GVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGA 315 (519)
Q Consensus 237 GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 315 (519)
|++++++.+|+.++++.+ .+..+|||+||+ |+|+++.+++++..+..++....... + +. ....
T Consensus 176 Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~i~~~~E~sv~v~~~~~g~~~~p~~~~~~~--~---g~---~~~~ 239 (403)
T 3k5i_A 176 GNFRVNSQDDIPEALEAL--------KDRPLYAEKWAYFKMELAVIVVKTKDEVLSYPTVETVQE--D---SI---CKLV 239 (403)
T ss_dssp TEEEECSTTSHHHHHHHT--------TTSCEEEEECCCEEEEEEEEEEECSSCEEECCCEEEEEE--T---TE---EEEE
T ss_pred CEEEECCHHHHHHHHHhc--------CCCcEEEecCCCCCeEEEEEEEEcCCCEEEeCCeeeEEe--C---CE---EEEE
Confidence 999999999999998865 247899999999 59999999986543333333221111 0 00 1245
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHH
Q 010065 316 YSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVL 395 (519)
Q Consensus 316 ~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~ 395 (519)
+.|++.++++..+++++.+ .+++.++|+. |++++||+++++| ++||+|||||||++.++.+. .+|+|+++++
T Consensus 240 ~~Pa~~l~~~~~~~~~~~a----~~i~~~Lg~~--G~~~ve~~~~~dg-~~~v~EiNpR~~~sg~~~~~-~~~~s~~~~~ 311 (403)
T 3k5i_A 240 YAPARNVSDAINQKAQELA----RKAVAAFDGK--GVFGVEMFLLEDD-SIMLCEIASRIHNSGHYTIE-GCALSQFDAH 311 (403)
T ss_dssp EESCSSCCHHHHHHHHHHH----HHHHHTSCCS--EEEEEEEEEETTS-CEEEEEEESSCCGGGTTHHH-HBSSCHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHH----HHHHHHcCCe--eEEEEEEEEeCCC-cEEEEEeecCCCCCCceeee-ecCCCHHHHH
Confidence 6788768888888888776 4677888865 9999999999876 79999999999988775553 4699999999
Q ss_pred HHHHhCCCC-CCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEE
Q 010065 396 LAACRGELT-GVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVT 474 (519)
Q Consensus 396 i~~~~g~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi 474 (519)
+++++|... ++.+.....+.+.++++... + ...+.+++++.+ .+++.+++++... ...+.++|+|+
T Consensus 312 ~ra~~G~pl~~~~~~~~~~a~m~nilg~~~-~-----~~~~~~~~~~~~-~p~~~~~~ygk~~------~~~~rkmGhv~ 378 (403)
T 3k5i_A 312 LRAILDLPIPAQSLEIRQPSIMLNIIGGAA-P-----DTHLQAAECALS-IPNASIHLYSKGA------AKPGRKMGHIT 378 (403)
T ss_dssp HHHHTTCCCCGGGGSBSSCEEEEEEECCSS-S-----SHHHHHHHHHTT-STTEEEEECCCCS------CCTTCEEEEEE
T ss_pred HHHHcCCCCCcccccCCCcEEEEEEecCCc-c-----ccchhHHHHHhc-CCCCEEEECCCCC------CCCCCeeEEEE
Confidence 999999743 22233322245666766432 1 123556666654 5777887776532 13457789999
Q ss_pred EecCCHHHHHHHHHHHhhccc
Q 010065 475 AKGKDVEEAQDRAYLAVEEIN 495 (519)
Q Consensus 475 ~~g~t~~ea~~~a~~~~~~i~ 495 (519)
+.|+|.++|+++|.++++.++
T Consensus 379 ~~~~~~~~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 379 VTAPTMHEAETHIQPLIDVVD 399 (403)
T ss_dssp EECSSHHHHHHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHHHHhhhh
Confidence 999999999999999988765
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=352.42 Aligned_cols=385 Identities=18% Similarity=0.143 Sum_probs=280.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
+++|||+|+|.....+++++++. |++++.+++..... ....+ ..+ ..+..|.+.++++++++++|+|+++.|+...
T Consensus 19 ~~~ili~g~g~~g~~~~~a~~~~-G~~v~~v~~~~~~~~~~~ad-~~~-~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~~ 95 (433)
T 2dwc_A 19 AQKILLLGSGELGKEIAIEAQRL-GVEVVAVDRYANAPAMQVAH-RSY-VGNMMDKDFLWSVVEREKPDAIIPEIEAINL 95 (433)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT-TCEEEEEESSTTCHHHHHSS-EEE-ESCTTCHHHHHHHHHHHCCSEEEECSSCSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCChhhhhcc-eEE-ECCCCCHHHHHHHHHHcCCCEEEECcccCCH
Confidence 57999999995555677888765 99998887542111 11111 122 4567789999999999999999998887654
Q ss_pred HHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEE
Q 010065 161 SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVI 239 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l-~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~ 239 (519)
.+++.++.+|+ ++|++++++.+++||..+++++ +++|||+|++..+.+.+++.+++++++||+|+||..++||+||+
T Consensus 96 -~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~ 173 (433)
T 2dwc_A 96 -DALFEFEKDGY-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTLDELYEACEKIGYPCHTKAIMSSSGKGSY 173 (433)
T ss_dssp -HHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHHHHHHHCSSEEEEECCC------E
T ss_pred -HHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCHHHHHHHHHhcCCCEEEEECCCcCCCCeE
Confidence 45677899999 4589999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEe----CCeeEEeccccccc-cccCCCCCCCCCCc
Q 010065 240 VAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVD----GENAIPLESAQDHK-RVGDGDTGPNTGGM 313 (519)
Q Consensus 240 ~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~d----g~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 313 (519)
++++.+|+.++++.++... + ..+..++|||||+ |.|+++.++++ |+.+..+.....+. ...+ ..
T Consensus 174 ~v~~~~el~~~~~~~~~~~-~-~~~~~~lvEe~i~~g~E~sv~~~~~~~~~G~~~~~~~~~~~~~~~~~~--------~~ 243 (433)
T 2dwc_A 174 FVKGPEDIPKAWEEAKTKA-R-GSAEKIIVEEHIDFDVEVTELAVRHFDENGEIVTTFPKPVGHYQIDGD--------YH 243 (433)
T ss_dssp EECSGGGHHHHHHC-----------CCEEEEECCCCSEEEEECCEEEECTTSCEEEEEECCEEEEESSSS--------EE
T ss_pred EECCHHHHHHHHHHHHhhc-c-cCCCCEEEEccCCCCeeEEEEEEecccCCCCEeEEEecccceEEEcCE--------EE
Confidence 9999999999998765310 0 0246899999999 89999999984 44222222211111 1111 12
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH-hCCCHH
Q 010065 314 GAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR-LESDLA 392 (519)
Q Consensus 314 ~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~-~G~d~~ 392 (519)
..+.|++ ++++..+++.+.+ .+++.++|+. |++++||++++++ +||+|+|||+|++.++.+... +|+|++
T Consensus 244 ~~~~p~~-l~~~~~~~i~~~a----~~~~~~lg~~--G~~~ve~~~~~~~--~~viEiN~R~~~~~~~~~~~~~~g~~~~ 314 (433)
T 2dwc_A 244 ASWQPAE-ISEKAEREVYRIA----KRITDVLGGL--GIFGVEMFVKGDK--VWANEVSPRPHDTGMVTLASHPPGFSEF 314 (433)
T ss_dssp EEEESCC-CCHHHHHHHHHHH----HHHHHHHCSS--EECEEEEEEETTE--EEEEEEESSCCGGGGGHHHHSCTTCSHH
T ss_pred EEEcCCC-CCHHHHHHHHHHH----HHHHHHcCCe--eEEEEEEEEeCCc--EEEEEEeCCcCCCcceehhHhccCCCHH
Confidence 4567888 8998888887766 4677888875 9999999999875 999999999999877666554 499999
Q ss_pred HHHHHHHhCCCCCC-------CcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEe
Q 010065 393 EVLLAACRGELTGV-------TLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIA 465 (519)
Q Consensus 393 ~~~i~~~~g~~~~~-------~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 465 (519)
++++++++|..... .+.+...+++.++++. . |+ ....+.+++++.. .+++.++..+.. ...
T Consensus 315 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~a~~~~v~~~-~-~~---~~~~i~g~~~~~~-~pg~~v~~~~~~------~~~ 382 (433)
T 2dwc_A 315 ALHLRAVLGLPIPGEWVDGYRLFPMLIPAATHVIKAK-V-SG---YSPRFRGLVKALS-VPNATVRLFGKP------EAY 382 (433)
T ss_dssp HHHHHHHHTCCCCCEEETTEEEECCSSCEEEEEEECS-S-CE---ESCEEECHHHHTT-STTEEEEECCCS------EEC
T ss_pred HHHHHHHcCCCCCcccccccccccccccEEEEEEEcC-C-CC---cCcCcchHHHHhh-CCCcEEEEecCC------CCC
Confidence 99999999984432 2344433444555443 2 22 2234566666543 455544433221 134
Q ss_pred cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCeeec
Q 010065 466 TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYR 502 (519)
Q Consensus 466 ~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r 502 (519)
.+.++|+|++.|+|.++|.++++++++.++++|...+
T Consensus 383 ~~~~lg~v~~~g~~~~ea~~~~~~~~~~i~~~~~~~~ 419 (433)
T 2dwc_A 383 VGRRLGIALAWDKDVEVAKRKAEMVAHMIELRTRSSD 419 (433)
T ss_dssp TTCEEEEEEEECSSHHHHHHHHHHHHHTCEEECTTSC
T ss_pred CCCeEEEEEEEeCCHHHHHHHHHHHHhheEEEeeccC
Confidence 5678899999999999999999999999999987766
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=345.61 Aligned_cols=377 Identities=16% Similarity=0.150 Sum_probs=284.8
Q ss_pred CCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 79 AGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 79 ~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
+...++|+|+|+|.....+++++++. |+++++++++.... ...++ ..+ ..+..|.+.+.++++ ++|+|+++.|.
T Consensus 32 ~~~~~~IlIlG~G~lg~~~~~aa~~l-G~~v~v~d~~~~~p~~~~ad-~~~-~~~~~d~~~l~~~a~--~~D~V~~~~e~ 106 (419)
T 4e4t_A 32 ILPGAWLGMVGGGQLGRMFCFAAQSM-GYRVAVLDPDPASPAGAVAD-RHL-RAAYDDEAALAELAG--LCEAVSTEFEN 106 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCTTCHHHHHSS-EEE-CCCTTCHHHHHHHHH--HCSEEEECCTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCCCcCchhhhCC-EEE-ECCcCCHHHHHHHHh--cCCEEEEccCc
Confidence 44568999999997767778887766 99998887542221 12222 223 467788999999994 68999998776
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH----hCCCEEEEeC-CC
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQE----EGAPIVVKAD-GL 232 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~----~g~P~VvKP~-~g 232 (519)
... .+++.+++. .++|++++++.+++||..+|++|+++|||+|++..+++.+++.+++++ + ||+|+||. .|
T Consensus 107 ~~~-~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g 182 (419)
T 4e4t_A 107 VPA-ASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAV-LPGILKTARLG 182 (419)
T ss_dssp CCH-HHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSHHHHHTSCHHHHHTT-CSEEEEESSSC
T ss_pred CCH-HHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhhcccc-CCEEEEecCCC
Confidence 543 456667776 367999999999999999999999999999999999999999888888 9 99999999 88
Q ss_pred CCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCCCCCCCC
Q 010065 233 AAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNT 310 (519)
Q Consensus 233 ~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~ 310 (519)
++|+|++++++.+|+.++++.+ .+..+|||+||+| +|+++.+++|+. .+..++....... + +.
T Consensus 183 ~~G~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~~~e~~~~--~---g~-- 247 (419)
T 4e4t_A 183 YDGKGQVRVSTAREARDAHAAL--------GGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQNVHH--N---GI-- 247 (419)
T ss_dssp CTTTTEEEECSHHHHHHHHHHT--------TTCCEEEEECCCEEEEEEEEEEECTTSCEEECCCEEEEEE--T---TE--
T ss_pred CCCCceEEECCHHHHHHHHHhc--------CCCcEEEeecCCCCeEEEEEEEEcCCCCEEEEeCeEEEee--C---Ce--
Confidence 8999999999999999998765 3478999999995 999999998643 3444443322111 0 00
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCC
Q 010065 311 GGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESD 390 (519)
Q Consensus 311 g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d 390 (519)
-...+.|++.++++..+++++.+ .+++.++|+. |++++||+++++| ++||+|||||||++.++.+ ..+|+|
T Consensus 248 -~~~~~~Pa~~l~~~~~~~~~~~a----~~i~~~lg~~--G~~~vE~~~~~dG-~~~v~EiNpR~~~sg~~t~-~~~~~s 318 (419)
T 4e4t_A 248 -LALTIVPAPAADTARVEEAQQAA----VRIADTLGYV--GVLCVEFFVLEDG-SFVANEMAPRPHNSGHYTV-DACATS 318 (419)
T ss_dssp -EEEEEESCTTCCHHHHHHHHHHH----HHHHHHHTCC--EEEEEEEEEETTC-CEEEEEEESSCCGGGTTHH-HHBSSC
T ss_pred -EEEEEcCCCCCCHHHHHHHHHHH----HHHHHHCCCe--eEEEEEEEEeCCC-CEEEEEEeCCCCCCCCeEe-eccCCC
Confidence 01346788768998888888766 4677888875 9999999999886 7999999999998887544 357999
Q ss_pred HHHHHHHHHhCCCC-CCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCe
Q 010065 391 LAEVLLAACRGELT-GVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGR 469 (519)
Q Consensus 391 ~~~~~i~~~~g~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r 469 (519)
++++++++++|... ++.+ .. ..++.++++...++........+.+++++.+ .+++.+++++... ...+.+
T Consensus 319 ~~~~~~ra~~G~pl~~~~~-~~-~~~m~n~lg~~~~~~~~~~~~~~~~~~~~l~-~p~~~~~~ygk~~------~~~~rk 389 (419)
T 4e4t_A 319 QFEQQVRAMTRMPLGNPRQ-HS-PAAMLNILGDVWFPNGAAAGAVTPPWDTVAA-MPAAHLHLYGKEE------ARVGRK 389 (419)
T ss_dssp HHHHHHHHHTTCCCCCCCB-CS-CEEEEEEEGGGGCTTCGGGCCCCCCHHHHHT-STTEEEEECCCSC------CCTTCE
T ss_pred HHHHHHHHHcCCCCCCccc-cC-CeEEEEEecCccccccccccccchHHHHHHh-CCCCEEEECCCCC------CCCCCc
Confidence 99999999999843 3333 22 3567777776433211000122445566654 5777877776432 134578
Q ss_pred EEEEEEecCCHHHHHHHHHHHhhccccC
Q 010065 470 VLGVTAKGKDVEEAQDRAYLAVEEINWP 497 (519)
Q Consensus 470 vg~vi~~g~t~~ea~~~a~~~~~~i~~~ 497 (519)
+|+|++.|+|.++|+++++++.+.|+++
T Consensus 390 mGhv~~~~~~~~~~~~~a~~~~~~l~~~ 417 (419)
T 4e4t_A 390 MGHVNFTAEMRDDAVAAATACAQLLRVP 417 (419)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999988763
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=354.93 Aligned_cols=309 Identities=16% Similarity=0.136 Sum_probs=228.8
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC--------Cc
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD--------AT 126 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~--------~~ 126 (519)
+|||+||+||.|+||+||+.||.. ++.+|++. |++++.++.+..+.+...+ ..
T Consensus 3 ~~~v~vl~gg~s~E~~vs~~s~~~------------------v~~al~~~-g~~v~~i~~~~~~~~~~~~~~~~~~~~~~ 63 (364)
T 2i87_A 3 KENICIVFGGKSAEHEVSILTAQN------------------VLNAIDKD-KYHVDIIYITNDGDWRKQNNITAEIKSTD 63 (364)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHH------------------HHHTSCTT-TEEEEEEEECTTCCEEEECCCCSCCCSGG
T ss_pred CcEEEEEECCCCccchhHHHHHHH------------------HHHHHhhc-CCEEEEEEEcCCCCEEeccccccccccch
Confidence 689999999999999999998765 67777665 9998888754322221100 01
Q ss_pred cccCC-CCCC--HHHHHHH-HHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHH
Q 010065 127 CIPDL-DVLD--GDAVISF-CRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDK 197 (519)
Q Consensus 127 ~v~~~-d~~d--~~~l~~~-~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~ 197 (519)
.+ .+ ++.+ ...++.. .+..++|+||+. +|++.++ ..++.+|+|++|++++++.+++||..++++|++
T Consensus 64 ~~-~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~ed~~~~---~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~ 139 (364)
T 2i87_A 64 EL-HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQ---GLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEH 139 (364)
T ss_dssp GS-CGGGSEEECSSGGGGBCTTSSBCSEEEEECCCSSSCTTHHH---HHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHH
T ss_pred hh-cccccccccccccccccccccCCCEEEEeCCCCCCcCHHHH---HHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHH
Confidence 11 11 1110 0011100 024579999992 5777654 448999999999999999999999999999999
Q ss_pred cCCCCCCeeecCCHH-------HHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEE
Q 010065 198 YGIPTAKYKTFTDPN-------AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIE 270 (519)
Q Consensus 198 ~Gi~~p~~~~v~~~~-------~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvE 270 (519)
+|||+|++..+.+.+ ++.++.++++||+||||..++||.||.++++.+|+.++++.++. .+..+|||
T Consensus 140 ~Gip~p~~~~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvE 213 (364)
T 2i87_A 140 RGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ------FDRKLVIE 213 (364)
T ss_dssp HTCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT------TCSEEEEE
T ss_pred CCCCCCCEEEEechhhcccchhHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCeEEEE
Confidence 999999999988765 45666788999999999999999999999999999999998863 46799999
Q ss_pred eccCCcEEEEEEEEeCCe-eEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 010065 271 EFLEGEEASFFALVDGEN-AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKF 349 (519)
Q Consensus 271 e~I~G~E~sv~~l~dg~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~ 349 (519)
+||+|+|++|.++.+++. +.+.........++++..+|+.|.+..++|+. ++++..+++++.+ .++++++|+.
T Consensus 214 e~I~G~E~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa~-l~~~~~~~i~~~a----~~~~~alg~~- 287 (364)
T 2i87_A 214 QGVNAREIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPAD-LDEDVQLTLRNMA----LEAFKATDCS- 287 (364)
T ss_dssp ECCCCEEEEEEEEESSSCEECCCEEECCSCCC-----------CCEESSCS-SCHHHHHHHHHHH----HHHHHHTTCC-
T ss_pred eCccCeEEEEEEEcCCCcEEeeeEEEecCCCcCCHHHcccCCCeeEEeCCC-CCHHHHHHHHHHH----HHHHHHcCCC-
Confidence 999999999999986542 22222222223477888888877777889998 9999888888876 4688999987
Q ss_pred eeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH----HHhCCCHHHHHHHHHhC
Q 010065 350 VGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM----VRLESDLAEVLLAACRG 401 (519)
Q Consensus 350 ~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~----~~~G~d~~~~~i~~~~g 401 (519)
|++++||+++++| ++||+|||||||++.+ +++ ..+|+|+.+++.+++..
T Consensus 288 -G~~~vD~~~~~~g-~~~viEiN~rpg~t~~-s~~p~~~~~~G~~~~~l~~~li~~ 340 (364)
T 2i87_A 288 -GLVRADFFVTEDN-QIYINETNAMPGFTAF-SMYPKLWENMGLSYPELITKLIEL 340 (364)
T ss_dssp -EEEEEEEEECTTC-CEEEEEEESSCCCSTT-SHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -cEEEEEEEEecCC-CEEEEEEeCCCCCCch-hHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999876 7999999999999766 443 34599998887766543
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-41 Score=352.51 Aligned_cols=408 Identities=18% Similarity=0.197 Sum_probs=291.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC-C-CcCCCCCcc-cc----CCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA-G-ISNSGDATC-IP----DLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~-~-~~~~~~~~~-v~----~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
++||||+|+|.....+++++++. |++++.++.+ +. . ....++... +. .-+..|.+.+++++++.++|+|+|
T Consensus 6 ~~kiLI~g~g~~a~~i~~aa~~~-G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i~p 84 (446)
T 3ouz_A 6 IKSILIANRGEIALRALRTIKEM-GKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFP 84 (446)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHT-TCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEEEC
T ss_pred cceEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEEEE
Confidence 57999999997777788888877 9999888533 21 1 111111111 10 114457899999999999999999
Q ss_pred CC----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEE
Q 010065 154 GP----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~Vv 227 (519)
+. |+. .+++.+++.|+|++|++++++.+++||..++++|+++|||+|++. .+.+.+++.++++++|||+|+
T Consensus 85 ~~g~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g~Pvvv 161 (446)
T 3ouz_A 85 GYGFLSENQ---NFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVIL 161 (446)
T ss_dssp CSSTTTTCH---HHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHCSSEEE
T ss_pred CCcccccCH---HHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhCCCEEE
Confidence 63 443 456779999999999999999999999999999999999999997 789999999999999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccC
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGD 303 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~ 303 (519)
||..++||+||+++++.+|+.++++.+... ..+ .+..++||+||+| +|+++.++.|+. .++.+...... ...
T Consensus 162 Kp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~--~~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~--~~~ 237 (446)
T 3ouz_A 162 KAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAF--GDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCS--MQR 237 (446)
T ss_dssp EETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHH--SCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEE--EEE
T ss_pred EECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeceee--eee
Confidence 999999999999999999999999887632 112 1478999999999 899999998764 44444321100 000
Q ss_pred CCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHH
Q 010065 304 GDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVL 383 (519)
Q Consensus 304 ~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~ 383 (519)
.. .......|+..++++..+++.+.+. +++.++|+. |++++||+++++| ++||+|||||++++.. ..
T Consensus 238 ~~-----~~~~~~~p~~~l~~~~~~~l~~~a~----~~~~~lg~~--G~~~ve~~~~~~g-~~~~iEiNpR~~g~~~-~~ 304 (446)
T 3ouz_A 238 RH-----QKLIEESPAILLDEKTRTRLHETAI----KAAKAIGYE--GAGTFEFLVDKNL-DFYFIEMNTRLQVEHC-VS 304 (446)
T ss_dssp TT-----EEEEEEESCTTSCHHHHHHHHHHHH----HHHHHTTCC--EEEEEEEEECTTC-CEEEEEEESSCCTTHH-HH
T ss_pred cC-----ceEEEECCCCCCCHHHHHHHHHHHH----HHHHHcCCC--CceEEEEEEeCCC-CEEEEEeECCCCCcce-ee
Confidence 00 0113456885589988888888764 677888877 9999999999875 6999999999988643 44
Q ss_pred HHHhCCCHHHHHHHHHhCCCCCCCc-ccCCCcEEEEEEecCCCCCCC-CCCcccccchhhhccCCCeEEEEeeeeecCCC
Q 010065 384 MVRLESDLAEVLLAACRGELTGVTL-NWSPGSAMVVVMASKGYPGSY-EKGSEIQNLEEAEQVAPSVKIFHAGTALDADG 461 (519)
Q Consensus 384 ~~~~G~d~~~~~i~~~~g~~~~~~~-~~~~~~a~~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (519)
...+|+|+.++++++++|...+... ....++++.+.+.... |..+ .....+..+... ..+++++... . ..|
T Consensus 305 ~~~~G~dl~~~~~~~~~G~~l~~~~~~~~~g~ai~~ri~ae~-~~~~~p~~G~i~~~~~p--~~~~vr~~~~-~---~~G 377 (446)
T 3ouz_A 305 EMVSGIDIIEQMIKVAEGYALPSQESIKLNGHSIECRITAED-SKTFLPSPGKITKYIPP--AGRNVRMESH-C---YQD 377 (446)
T ss_dssp HHHHCCCHHHHHHHHHTTCCCCCGGGCCCCSEEEEEEEESBC-TTTCCBCCEECSEEECC--CSTTEEEEEC-C---CTT
T ss_pred eeeeCCCHHHHHHHHHCCCCCCcCCCCCcceEEEEEEeeccC-CCccCCCCcEEeEEecC--CCCCEEEEcc-c---ccC
Confidence 4457999999999999998544221 2234677766555432 2111 000112222110 1124444321 1 134
Q ss_pred cEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccccc
Q 010065 462 NFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 462 ~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~~~ 517 (519)
...+ .++++|+|++.|+|.++|.+++.++++.++++|. +.++=+.++.|...++.|
T Consensus 378 ~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 440 (446)
T 3ouz_A 378 YSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDT 440 (446)
T ss_dssp CEECTTTCCEEEEEEEEESSHHHHHHHHHHHHHHCEEESSCCTHHHHHHHHTCHHHHTTCCCT
T ss_pred CEeCCccCCcceEEEEEcCCHHHHHHHHHHHHhhCEEeCccCCHHHHHHHhCChhhccCCccc
Confidence 3332 3457999999999999999999999999999983 344444455555555544
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-41 Score=353.18 Aligned_cols=404 Identities=18% Similarity=0.169 Sum_probs=288.3
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CCCC--cCCCCCccc-c----CCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NAGI--SNSGDATCI-P----DLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~~~--~~~~~~~~v-~----~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
++|||+|+|.....+++++++. |+++++++++ +... ...++.... . ..+..|.+.++++++++++|+|+++
T Consensus 2 k~ilI~g~g~~~~~i~~a~~~~-G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~ 80 (451)
T 2vpq_A 2 KKVLIANRGEIAVRIIRACRDL-GIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPG 80 (451)
T ss_dssp CEEEECCCHHHHHHHHHHHHHT-TCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECC
T ss_pred ceEEEeCCCHHHHHHHHHHHHc-CCEEEEEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEEC
Confidence 6899999887677788888776 9999988643 2111 111111111 0 1355678999999999999999997
Q ss_pred ----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEEE
Q 010065 155 ----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 155 ----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~VvK 228 (519)
.|+.. +++.++.+|+|++|++++++.+++||..++++|+++|||+|++. .+.+.+++.+++++++||+|+|
T Consensus 81 ~g~~~e~~~---~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvK 157 (451)
T 2vpq_A 81 YGFLAENAD---FAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIK 157 (451)
T ss_dssp SSTTTTCHH---HHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCSSEEEE
T ss_pred CCccccCHH---HHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhcCCcEEEE
Confidence 55543 56779999999999999999999999999999999999999977 7899999999999999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~ 304 (519)
|..++||+||.++++.+|+.++++.++.. ..+ .+..++|||||+| +|+++.++.++ +.+..+..... .....
T Consensus 158 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~--~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~--~~~~~ 233 (451)
T 2vpq_A 158 ATAGGGGKGIRVARDEKELETGFRMTEQEAQTAF--GNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDC--TIQRR 233 (451)
T ss_dssp ETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHH--SCCCEEEEECCCSEEEEEEEEEECTTSCEEEEEEEEE--EEEET
T ss_pred ECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhc--CCCcEEEEEecCCCeEEEEEEEEcCCCCEEEEecccc--chhcc
Confidence 99999999999999999999999877532 112 1378999999999 89999999864 34444432100 00000
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEE-cCCCceEEEEEeCCCCCCchHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIE-KKSGLPKLIEYNVRFGDPECQVL 383 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~-~~g~~~~viEiN~R~G~~~~~~~ 383 (519)
. .......|++.++++..+++.+.+ .++++++|+. |++++||+++ ++| ++||+|+|||++++.. .+
T Consensus 234 ~-----~~~~~~~P~~~l~~~~~~~i~~~a----~~~~~~lg~~--G~~~ve~~~~~~~g-~~~viEiN~R~~~~~~-~~ 300 (451)
T 2vpq_A 234 M-----QKLVEEAPSPILDDETRREMGNAA----VRAAKAVNYE--NAGTIEFIYDLNDN-KFYFMEMNTRIQVEHP-VT 300 (451)
T ss_dssp T-----EEEEEEESCTTCCHHHHHHHHHHH----HHHHHHTTCC--EEEEEEEEEETTTT-EEEEEEEECSCCTTHH-HH
T ss_pred c-----cceEEEcCCCCCCHHHHHHHHHHH----HHHHHHcCCc--ceEEEEEEEECCCC-CEEEEEeeCCCCCcee-hh
Confidence 0 012345688768888888888876 4677888876 9999999999 666 7999999999988643 34
Q ss_pred HHHhCCCHHHHHHHHHhCCCCCCC---cccCCCcEEEEEEecCC----CCCCCCCCcccccchhhhccCCCeEE---EEe
Q 010065 384 MVRLESDLAEVLLAACRGELTGVT---LNWSPGSAMVVVMASKG----YPGSYEKGSEIQNLEEAEQVAPSVKI---FHA 453 (519)
Q Consensus 384 ~~~~G~d~~~~~i~~~~g~~~~~~---~~~~~~~a~~~~l~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~ 453 (519)
...+|+|+.++++++++|...... +.+. +.++...+.+.. ++...+ .+..++. . ..+++.+ ++.
T Consensus 301 ~~~~g~dl~~~~~~~~~G~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~p~~g---~i~~~~~-~-~~~~v~~~~~~~~ 374 (451)
T 2vpq_A 301 EMVTGIDLVKLQLQVAMGDVLPYKQEDIKLT-GHAIEFRINAENPYKNFMPSPG---KIEQYLA-P-GGYGVRIESACYT 374 (451)
T ss_dssp HHHHCCCHHHHHHHHHTTCCCSCCGGGCCCC-SEEEEEEEESEEGGGTTEECCS---BCSEEEC-C-CSTTEEEECCCCT
T ss_pred hHHhCCCHHHHHHHHHCCCCCCCcccccCcC-ceEeeeEeeeeccccccCCCCC---EEeEEEC-C-CCCCccccccccc
Confidence 445699999999999999864421 2233 344333322211 110111 1222221 0 0123333 122
Q ss_pred eeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eeccccccccccccccccC
Q 010065 454 GTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 454 ~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~~~~ 518 (519)
|... .. ..++|+|+|++.|+|.++|+++++++++.++++|. |+|+.+..+.|.+.++.|+
T Consensus 375 g~~~---~~--~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 2vpq_A 375 NYTI---PP--YYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGIDTTIPFHIKLLNNDIFRSGKFNTN 439 (451)
T ss_dssp TCBC---CT--TTCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESSCCSHHHHHHHHTCHHHHHTCCCTT
T ss_pred CCcc---Cc--ccccccEEEEEEeCCHHHHHHHHHHHHhccEEeCcCCCHHHHHHHhCCHhhhcCCCccH
Confidence 2221 11 34569999999999999999999999999999984 4666666666666555543
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-40 Score=335.20 Aligned_cols=357 Identities=21% Similarity=0.234 Sum_probs=264.6
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
||||+|+|.....++.++++. |+++++++++.... ...+ +.+ ..+..|.+.+++++ .++|+|+++.|+.. ..
T Consensus 1 ~iliiG~g~~g~~~~~a~~~~-G~~v~~~~~~~~~~~~~~a--~~~-~~~~~d~~~l~~~~--~~~d~v~~~~e~~~-~~ 73 (369)
T 3aw8_A 1 MIGILGGGQLGRMLALAGYPL-GLSFRFLDPSPEACAGQVG--ELV-VGEFLDEGALLRFA--EGLALVTYEFENVP-VE 73 (369)
T ss_dssp CEEEECCSHHHHHHHHHHTTB-TCCEEEEESCTTCGGGGTS--EEE-ECCTTCHHHHHHHH--TTCSEEEECCTTCC-HH
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCCCChHHHhh--ceE-ecCCCCHHHHHHHH--hCCCEEEECCCCcC-HH
Confidence 589999995445567777766 99999998763221 1122 223 56788899999988 68999999888765 45
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC-CCCcEEEe
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA-AGKGVIVA 241 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~-gs~GV~~v 241 (519)
+++.++.+| ++|++++++.+++||..+|++|+++|||+|++..+++.+++.+++++++||+|+||..++ +|+||+++
T Consensus 74 ~~~~l~~~g--~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v 151 (369)
T 3aw8_A 74 AARRLEGRL--PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALV 151 (369)
T ss_dssp HHHHHHHHS--CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSHHHHHHHHTTTCSSEEEEECCC------EEEE
T ss_pred HHHHHHHcC--CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEE
Confidence 667888899 459999999999999999999999999999999999999999888899999999999999 99999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeC-CeeEEeccccccccccCCCCCCCCCCceEEecC
Q 010065 242 MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDG-ENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPA 319 (519)
Q Consensus 242 ~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~ 319 (519)
++.+|+.++++.+ .+..++|||||+ |+|+++.+++|+ +.+..++....+++...+ ..++.|+
T Consensus 152 ~~~~el~~~~~~~--------~~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~~~~~~~~~~~~--------~~~~~p~ 215 (369)
T 3aw8_A 152 RTEEEALEALKAL--------GGRGLILEGFVPFDREVSLLAVRGRTGEVAFYPLVENRHWGGIL--------RLSLAPA 215 (369)
T ss_dssp CSHHHHHHHHTTT--------CSSSEEEEECCCCSEEEEEEEEECTTSCEEECCCEEEEEETTEE--------EEEEESC
T ss_pred CCHHHHHHHHHhc--------CCCcEEEEEcCCCCEEEEEEEEECCCCCEEEECCeeeeeeCCEE--------EEEECCC
Confidence 9999999888765 247899999999 899999999864 345545443332211110 1357788
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHH
Q 010065 320 PVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAAC 399 (519)
Q Consensus 320 ~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~ 399 (519)
+.++++..+++.+.+ .+++.++|+. |++++||++++ + ++|++|+|||+|++.++.. ..+|.|+++.+++.+
T Consensus 216 ~~l~~~~~~~~~~~a----~~~~~~lg~~--G~~~vd~~~~~-~-~~~viEiN~R~~~~~~~~~-~~~g~~~~~~~~~~~ 286 (369)
T 3aw8_A 216 PGASEALQKKAEAYA----LRAMEALDYV--GVLALEFFQVG-E-ELLFNEMAPRVHNSGHWTI-EGAETSQFENHLRAV 286 (369)
T ss_dssp TTCCHHHHHHHHHHH----HHHHHHHTCC--EEEEEEEEEET-T-EEEEEEEESSCCGGGTTHH-HHBSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HHHHHHCCCe--eEEEEEEEEEC-C-cEEEEEEeCCcCCccceee-eeecCCHHHHHHHHH
Confidence 767888888887765 4677888875 99999999998 4 5999999999998877543 457999999999999
Q ss_pred hCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCC
Q 010065 400 RGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKD 479 (519)
Q Consensus 400 ~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t 479 (519)
+|...+...... .+++.++++.. + .+ +.+.. .+++.+..++. ..+.+.++|+|++.|+|
T Consensus 287 ~g~~l~~~~~~~-~~~~~~~~~~~--~-------~~---~~~~~-~p~~~~~~~g~-------~~~~~~~lg~v~~~g~~ 345 (369)
T 3aw8_A 287 LGLPLGSTAPRG-QSAMVNLIGEK--P-------PF---AEVLK-VEGAHLHWYGK-------AVRPGRKVGHITLRRDG 345 (369)
T ss_dssp HTCCCCCCCBCS-EEEEEEEESCC--C-------CH---HHHHT-STTEEEEECCC-------CCCTTCEEEEEEEEESS
T ss_pred cCCCCCCccccc-cEEEEEEeCCC--c-------hH---HHhcc-CCCcEEEEecC-------CCCCCCeEEEEEEEcCC
Confidence 987432211122 24444444432 1 12 22222 24443333221 23455778899999999
Q ss_pred HHHHHHHHHHHhhccc
Q 010065 480 VEEAQDRAYLAVEEIN 495 (519)
Q Consensus 480 ~~ea~~~a~~~~~~i~ 495 (519)
.++|+++++++++.|+
T Consensus 346 ~~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 346 LKALEEGLARLSRLVS 361 (369)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999987
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=350.28 Aligned_cols=395 Identities=18% Similarity=0.198 Sum_probs=276.2
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC--C-cCCCCCc-ccc----CC-CCCCHHHHHHHHHHcCCcEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG--I-SNSGDAT-CIP----DL-DVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~--~-~~~~~~~-~v~----~~-d~~d~~~l~~~~~~~~id~Vi 152 (519)
+++|||+|+|.....+++++++. |++++.++++... . ...++.. .+. .. +..|.+.++++++++++|+|+
T Consensus 6 ~k~ILI~g~g~~~~~i~~a~~~~-G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v~ 84 (461)
T 2dzd_A 6 IRKVLVANRGEIAIRVFRACTEL-GIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIH 84 (461)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHH-TCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEECCcHHHHHHHHHHHHc-CCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence 46899999987667788888876 9999988754211 1 1111111 110 01 125689999999999999999
Q ss_pred ECC----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEE
Q 010065 153 VGP----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 153 ~g~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~V 226 (519)
++. |.. .+++.++.+|+|++|++++++.+++||..++++++++|||+|++. .+++.+++.+++++++||+|
T Consensus 85 ~~~g~~~E~~---~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~Pvv 161 (461)
T 2dzd_A 85 PGYGFLSENI---QFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPII 161 (461)
T ss_dssp CCSSSSTTCH---HHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHCSCEE
T ss_pred ECCCccccCH---HHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhcCCcEE
Confidence 964 554 467779999999999999999999999999999999999999997 78899999999999999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEecccccccccc
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVG 302 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~ 302 (519)
+||..++||+||+++++.+|+.++++.+... ..++ +..++|||||+| +|+++.++.++ +.++.+..... ...
T Consensus 162 vKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~--~~~ 237 (461)
T 2dzd_A 162 IKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFG--SDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDC--SVQ 237 (461)
T ss_dssp EEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTS--CCCEEEEECCCSCEEEEEEEEECTTCCEEEEEEEEE--EEE
T ss_pred EEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcC--CCcEEEEECCCCCeEEEEEEEEcCCCCEEEEEeccc--ccc
Confidence 9999999999999999999999999877542 1222 368999999999 89999999864 23332221100 000
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
... .....+.|+..++++..+++.+.+ .++++++|+. |.+++||+++++ ++||+|+|||++++.. .
T Consensus 238 ~~~-----~~~~~~~P~~~l~~~~~~~i~~~a----~~~~~~lg~~--g~~~ve~~~~~~--~~~viEiN~R~~~~~~-~ 303 (461)
T 2dzd_A 238 RRH-----QKVVEVAPSVSLSDELRQRICEAA----VQLMRSVGYV--NAGTVEFLVSGD--EFYFIEVNPRIQVEHT-I 303 (461)
T ss_dssp ETT-----EEEEEEESCTTSCHHHHHHHHHHH----HHHHHHTTCC--EEEEEEEEEETT--EEEEEEEESSCCGGGH-H
T ss_pred ccc-----cceEEECCcccCCHHHHHHHHHHH----HHHHHHcCCC--cceEEEEEEeCC--CEEEEEEECCCCCcee-e
Confidence 000 012345687558888888887765 4688889977 999999999984 5999999999987543 2
Q ss_pred HHHHhCCCHHHHHHHHHhCC-CCCCCccc-------CCCcEEEEEEecCCCCC--C-CCCCcccccchhhhccCCCeEEE
Q 010065 383 LMVRLESDLAEVLLAACRGE-LTGVTLNW-------SPGSAMVVVMASKGYPG--S-YEKGSEIQNLEEAEQVAPSVKIF 451 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~-~~~~~~~~-------~~~~a~~~~l~~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~~~ 451 (519)
+...+|+|+.++++++++|. +....+.+ .+++++.+.+.... |. . +..+ .+..+... ..+++.+.
T Consensus 304 ~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~g~~~~~ri~~~~-~~~~~~p~~g-~i~~~~~~--~~~~v~~~ 379 (461)
T 2dzd_A 304 TEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTED-PLNNFMPDTG-KIMAYRSG--GGFGVRLD 379 (461)
T ss_dssp HHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEEESEE-GGGTTEECCE-ECSEEECC--CCTTEEEE
T ss_pred EEeecCCCHHHHHHHHHcCCCccccccccccccccccceeEEEeeecccC-CccCccCCCC-eeeEEecC--CCCCeEee
Confidence 33346999999999999995 33322112 23555544332210 00 0 0000 01110000 00112221
Q ss_pred EeeeeecCCCcEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCeeecccccc
Q 010065 452 HAGTALDADGNFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGW 507 (519)
Q Consensus 452 ~~~~~~~~~g~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~ 507 (519)
+... ..|...+ .++++++|++.|+|.++|+++++++++.|+++|. |+|||.
T Consensus 380 --~~~~-~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~--~~~i~~ 432 (461)
T 2dzd_A 380 --AGNG-FQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRIRGI--KTNIPF 432 (461)
T ss_dssp --ESSC-STTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESS--CCSHHH
T ss_pred --cccc-cCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHhcEEeCC--cCCHHH
Confidence 0000 1222211 3456999999999999999999999999999998 999994
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=355.76 Aligned_cols=299 Identities=18% Similarity=0.110 Sum_probs=233.3
Q ss_pred ccceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCC
Q 010065 53 KSSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLD 132 (519)
Q Consensus 53 ~~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d 132 (519)
+.+|||+|||||.|+||+||+.||.+ +..+|. |++++.++.+..+.+......
T Consensus 18 ~~~~~v~vl~gG~s~E~~vSl~S~~~------------------v~~al~---g~~v~~i~~~~~~~~~~~~~~------ 70 (367)
T 2pvp_A 18 GSHMEFCVLFGGASFEHEISIVSAIA------------------LKGVLK---DRIKYFIFLDENHHFYLIEES------ 70 (367)
T ss_dssp --CCCEEEEEECSSTTHHHHHHHHHH------------------HHHHHG---GGEEEEEEECTTCCEEECCGG------
T ss_pred ccCCEEEEEECCCCcchhhhHHHHHH------------------HHHHhC---CCeEEEEEECCCCCEEecccc------
Confidence 45689999999999999999999865 577775 788888765433222110000
Q ss_pred CCCHHHHH---------------HHHH-----Hc--CCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHh
Q 010065 133 VLDGDAVI---------------SFCR-----KW--SVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALE 185 (519)
Q Consensus 133 ~~d~~~l~---------------~~~~-----~~--~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~ 185 (519)
..+...+. .+.. .. ++|+||+. +|++.+++ .++.+|+|++|+++.++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhg~~gedg~i~~---~le~~gip~~G~~~~a~~~~ 147 (367)
T 2pvp_A 71 NMHSKYFAQIKEKKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLAS---LLEFYRIAFIGPRIEASVLS 147 (367)
T ss_dssp GCSHHHHHTGGGSCCCCBEEETTEEEEEETTEEEEEECCSEEECCCSTTTTSSHHHH---HHHHTTCCEESCCHHHHHHH
T ss_pred ccchhhhccccccccccccccCcceeccccccccccCCCEEEEcCCCCCccHHHHHH---HHHHcCCCccCCCHHHHHHH
Confidence 00111110 0110 22 68999993 67876544 49999999999999999999
Q ss_pred cCHHHHHHHHHHcCCCCCCeeecCCHH--HHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCC
Q 010065 186 GSKNFMKNLCDKYGIPTAKYKTFTDPN--AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSA 263 (519)
Q Consensus 186 ~dK~~~k~~l~~~Gi~~p~~~~v~~~~--~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~ 263 (519)
+||..++++|+++|||+|++..+.+.+ ++.+ .+.++||+||||..++||.||.++++.+||.++++.++. .
T Consensus 148 ~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~-~~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~------~ 220 (367)
T 2pvp_A 148 YNKYLTKLYAKDLGIKTLDYVLLNEKNRANALD-LMNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFE------Y 220 (367)
T ss_dssp HSHHHHHHHHHHHTCBCCCCEEECTTTGGGHHH-HCCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTT------T
T ss_pred cCHHHHHHHHHHCCcCCCCEEEEeCCchHHHHH-HhccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh------c
Confidence 999999999999999999999998776 5555 667899999999999999999999999999999998863 4
Q ss_pred CCcEEEEeccCC-cEEE-EEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 010065 264 GCRVIIEEFLEG-EEAS-FFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKG 341 (519)
Q Consensus 264 ~~~~lvEe~I~G-~E~s-v~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~ 341 (519)
+..+|||+||+| +||+ +.+.++|+.+...........+++++.+|+.|++..++|++ ++++..+++++.+ .++
T Consensus 221 ~~~vlVEe~I~G~~E~svi~v~v~g~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a----~~~ 295 (367)
T 2pvp_A 221 SKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFLDFKQKYLDFSRNKAPKAS-LSNALEEQLKENF----KKL 295 (367)
T ss_dssp CSCEEEEECCTTCEEEEEEEEEETTEEEEEEEEETTTTEEECCCCSSCCSCCCSCCCCC-CCHHHHHHHHHHH----HHH
T ss_pred CCcEEEEeCCCCCceeeEEEEEECCEEEEEEEEEecCCceEcccccccCCCeeEEecCC-CCHHHHHHHHHHH----HHH
Confidence 679999999999 9976 44444554333222333334688999999988888889998 9999888888876 468
Q ss_pred HHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 342 MSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 342 ~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
++++|+. |++|+||+++ +| ++||+|||||||++.+ ++++ |+.+++.+++.+.
T Consensus 296 ~~aLg~~--G~~~vDf~~~-~g-~~~vlEiN~rpg~t~~-s~~p----~~~~l~~~li~~~ 347 (367)
T 2pvp_A 296 YSDLFDG--AIIRCDFFVI-EN-EVYLNEINPIPGSLAN-YLFD----DFKTTLENLAQSL 347 (367)
T ss_dssp HTTTSTT--CCEEEEEEEE-TT-EEEEEEEESSCGGGGG-GGSS----SHHHHHHHHHHHC
T ss_pred HHHcCCC--CEEEEEEEEE-CC-eEEEEEEeCCCCCCcc-cccC----CHHHHHHHHHhCc
Confidence 8999986 9999999999 55 6999999999999776 6666 9999999999885
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=345.31 Aligned_cols=295 Identities=16% Similarity=0.107 Sum_probs=226.8
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcC--------CCCCc
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISN--------SGDAT 126 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~--------~~~~~ 126 (519)
+|||+||+||.|+||+||+.||++ +..+|.+ +++.++.+..+.+. ..+..
T Consensus 3 ~~~v~vl~gg~s~E~~vSl~s~~~------------------v~~al~~----~v~~i~~~~~~~~~~~~~~~~~~~~~~ 60 (322)
T 2fb9_A 3 FMRVLLIAGGVSPEHEVSLLSAEG------------------VLRHIPF----PTDLAVIAQDGRWLLGEKALTALEAKA 60 (322)
T ss_dssp CCCEEEEEECSSTTHHHHHHHHHH------------------HHHHCSS----CEEEEEECTTSCEECHHHHHHHTTSSC
T ss_pred CcEEEEEeCCCchhHHHHHHHHHH------------------HHHHhcc----CeEEEEEcCCCCEEecccchhhhcccc
Confidence 689999999999999999999876 5666643 45444432211111 10000
Q ss_pred -ccc-CCCCCCHHHHHHHHHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcC
Q 010065 127 -CIP-DLDVLDGDAVISFCRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYG 199 (519)
Q Consensus 127 -~v~-~~d~~d~~~l~~~~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~G 199 (519)
.+. ..++.. + +..++|+|||. +|++.++++ ++.+|+|++|+++.++.+++||..++++|+++|
T Consensus 61 ~~~~~~~~~~~---~----~~~~~D~v~~~~hg~~gedg~i~~~---le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~G 130 (322)
T 2fb9_A 61 APEGEHPFPPP---L----SWERYDVVFPLLHGRFGEDGTVQGF---LELLGKPYVGAGVAASALCMDKDLSKRVLAQAG 130 (322)
T ss_dssp CCCCCBCSSCC---C----CCTTCSEEEEECCSTTTTSSHHHHH---HHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTT
T ss_pred ccceecccccc---c----cccCCCEEEEeCCCCCCccHHHHHH---HHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCC
Confidence 010 000110 1 14579999992 578765554 899999999999999999999999999999999
Q ss_pred CCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEE
Q 010065 200 IPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEA 278 (519)
Q Consensus 200 i~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~ 278 (519)
||+|++..+.+.++. .. +++||+||||..+++|.||.++++.+|+.++++.++. .+..+|||+||+| +|+
T Consensus 131 ip~p~~~~~~~~~~~--~~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEe~I~G~~E~ 201 (322)
T 2fb9_A 131 VPVVPWVAVRKGEPP--VV-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFR------YDEKAVVEKALSPVREL 201 (322)
T ss_dssp CCCCCEEEEETTSCC--CC-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTT------TCSEEEEEECCSSCEEE
T ss_pred CCCCCEEEEECchhh--hh-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCeEEEEeCCCCCeeE
Confidence 999999998776541 22 6899999999999999999999999999999998863 4679999999999 999
Q ss_pred EEEEEEeCC-eeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEE
Q 010065 279 SFFALVDGE-NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGL 357 (519)
Q Consensus 279 sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf 357 (519)
++.++.+++ .+.+.........++++..+|+.|.+.+++|++ ++++..+++++.+ .++++++|+. |++|+||
T Consensus 202 ~v~vl~~~~~~~~~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa~-l~~~~~~~i~~~a----~~~~~alg~~--G~~~vD~ 274 (322)
T 2fb9_A 202 EVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAP-LDPGTQETVQELA----LKAYKVLGVR--GMARVDF 274 (322)
T ss_dssp EEEEESSSSCEEEEEEEEEEECCEEETTTEEECCEEEEESSCC-CCTTHHHHHHHHH----HHHHHHHTCC--SEEEEEE
T ss_pred EEEEEeCCCceEeeeEEEeeCCCccCHHHcccCCCeEEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCc--eEEEEEE
Confidence 999996543 233333333223577888888877777889998 8998888888876 4688899987 9999999
Q ss_pred EEEcCCCceEEEEEeCCCCCCchHHHH----HHhCCCHHHHHHHHHh
Q 010065 358 MIEKKSGLPKLIEYNVRFGDPECQVLM----VRLESDLAEVLLAACR 400 (519)
Q Consensus 358 ~~~~~g~~~~viEiN~R~G~~~~~~~~----~~~G~d~~~~~i~~~~ 400 (519)
+++ +| ++|++|||+|||++.+ +++ ..+|+|+.+++.+++.
T Consensus 275 ~~~-~g-~~~vlEiN~rpg~t~~-s~~p~~~~~~G~~~~~l~~~li~ 318 (322)
T 2fb9_A 275 FLA-EG-ELYLNELNTIPGFTPT-SMYPRLFEAGGVAYPELLRRLVE 318 (322)
T ss_dssp EEE-TT-EEEEEEEESSCCCSSS-CHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEE-CC-cEEEEEEECCCCCCcc-cHHHHHHHHhCCCHHHHHHHHHH
Confidence 999 66 7999999999999876 444 3459999999887754
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=352.36 Aligned_cols=306 Identities=15% Similarity=0.139 Sum_probs=235.2
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC-----C----
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD-----A---- 125 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~-----~---- 125 (519)
+|||+||+||.|+||+||+.||.+ ++.+|++. |++++.++.+..+.+...+ .
T Consensus 3 ~~~v~vl~gG~s~E~~vs~~s~~~------------------v~~al~~~-g~~v~~i~~~~~~~~~~~~~~~~~~~~~~ 63 (343)
T 1e4e_A 3 RIKVAILFGGCSEEHDVSVKSAIE------------------IAANINKE-KYEPLYIGITKSGVWKMCEKPCAEWENEN 63 (343)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHH------------------HHHHSCTT-TEEEEEEEECTTSCEEEESCCCTTCCCTT
T ss_pred CcEEEEEeCCCCCCcchhHHHHHH------------------HHHHhhhc-CCEEEEEEEcCCCCEEecccchhhccccc
Confidence 689999999999999999999765 67787765 8998888654322221100 0
Q ss_pred -ccccCCCCC-CHHH-H-HHH--HHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHH
Q 010065 126 -TCIPDLDVL-DGDA-V-ISF--CRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNL 194 (519)
Q Consensus 126 -~~v~~~d~~-d~~~-l-~~~--~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~ 194 (519)
+.+ .+.+. +... + ... .+..++|+||+. +|++.++++ ++.+|+|++|+++.++.+++||..++++
T Consensus 64 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~ged~~~~~~---le~~gip~~g~~~~~~~~~~dK~~~k~~ 139 (343)
T 1e4e_A 64 CYSA-VLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL---FELSGIPFVGCDIQSSAICMDKSLTYIV 139 (343)
T ss_dssp CEEE-EECSCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTSSHHHHH---HHHHTCCBSSCCHHHHHHHHSHHHHHHH
T ss_pred ccce-ecccccccccceeecccccccccCCEEEEeCCCCCCcCHHHHHH---HHHcCCCccCCCHHHHHHHhCHHHHHHH
Confidence 001 00110 0000 1 000 123579999993 578765554 8999999999999999999999999999
Q ss_pred HHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC
Q 010065 195 CDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274 (519)
Q Consensus 195 l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~ 274 (519)
|+++|||+|++..+.+.+++.. ++++||+||||..++||.||.++++.+|+.++++.++. .+..+|||+||+
T Consensus 140 l~~~Gip~p~~~~~~~~~~~~~--~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~I~ 211 (343)
T 1e4e_A 140 AKNAGIATPAFWVINKDDRPVA--ATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ------YDSKILIEQAVS 211 (343)
T ss_dssp HHHTTCBCCCEEEECTTCCCCG--GGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTT------TCSSEEEEECCC
T ss_pred HHHCCCCcCCEEEEechhhhhh--hccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh------cCCcEEEEeCcC
Confidence 9999999999999887765432 57899999999999999999999999999999998753 457899999999
Q ss_pred CcEEEEEEEEeCCeeEEecc--ccccccccCCCCCCC----CCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010065 275 GEEASFFALVDGENAIPLES--AQDHKRVGDGDTGPN----TGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCK 348 (519)
Q Consensus 275 G~E~sv~~l~dg~~~~~~~~--~~~~~~~~~~~~~~~----~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~ 348 (519)
|+|++|.++.+++.+..++. ......+++++.+|+ .|++..++|+. ++++..+++++.+ .++++++|+.
T Consensus 212 G~E~~v~vl~~~~~~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a----~~~~~alg~~ 286 (343)
T 1e4e_A 212 GCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD-LSAEERGRIQETV----KKIYKTLGCR 286 (343)
T ss_dssp SEEEEEEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS-SCHHHHHHHHHHH----HHHHHHTTCE
T ss_pred CeEEEEEEEeCCCCeEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCC-CCHHHHHHHHHHH----HHHHHHcCCc
Confidence 99999999987543333322 222235788888887 67777788998 8998888888876 4688899976
Q ss_pred eeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH----HHhCCCHHHHHHHHHh
Q 010065 349 FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM----VRLESDLAEVLLAACR 400 (519)
Q Consensus 349 ~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~----~~~G~d~~~~~i~~~~ 400 (519)
|++|+||+++++| ++|++|||+|||++.+ +++ ..+|+|+.+++.+++.
T Consensus 287 --G~~~vD~~~~~~g-~~~viEiN~rpg~t~~-s~~p~~~~~~G~~~~~l~~~li~ 338 (343)
T 1e4e_A 287 --GLARVDMFLQDNG-RIVLNEVNTLPGFTSY-SRYPRMMAAAGISLPELIDRLIV 338 (343)
T ss_dssp --EEEEEEEEECTTC-CEEEEEEESSCCCSTT-CHHHHHHHHTTCCHHHHHHHHHH
T ss_pred --eEEEEEEEEeCCC-CEEEEEeeCCCCCCcc-cHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999877 7999999999999865 333 3459999999887764
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=330.96 Aligned_cols=354 Identities=17% Similarity=0.153 Sum_probs=245.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCC-CCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDV-LDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~-~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
+++|+|+|+|..+..+++++++. |++++.++++.... ...+ +....++. .|.+.++.++ +++|+|+++.|...
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~-G~~vv~vd~~~~~~~~~~a--D~~~~~~~~~d~~~~~~~~--~~~D~v~~~~~~~~ 75 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKA-GMKVVLVDKNPQALIRNYA--DEFYCFDVIKEPEKLLELS--KRVDAVLPVNENLA 75 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCTTCTTTTTS--SEEEECCTTTCHHHHHHHH--TSSSEEEECCCCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCCChhHhhC--CEEEECCCCcCHHHHHHHh--cCCCEEEECCCChh
Confidence 57999999998778888888776 99999997653221 2222 22113343 4566665544 57999999876543
Q ss_pred H-HHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcE
Q 010065 160 V-SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGV 238 (519)
Q Consensus 160 ~-~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV 238 (519)
. ...++.++..++|+ |++++++.+++||..+|++|+++|+|+|++.. ++||+|+||..++||+|+
T Consensus 76 ~~~~~~~~~~~~~~~~-g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~~-------------ig~P~vvKp~~g~g~~gv 141 (363)
T 4ffl_A 76 CIEFLNSIKEKFSCPV-LFDFEAYRISRDKKKSKDYFKSIGVPTPQDRP-------------SKPPYFVKPPCESSSVGA 141 (363)
T ss_dssp HHHHHHHHGGGCSSCB-CCCHHHHHHHTSHHHHHHHHHHTTCCCCCBSC-------------SSSCEEEECSSCCTTTTC
T ss_pred HHHHHHHHHHHCCCcc-CCCHHHHHHhhCHHHHHHHHHhcCCCCCCcee-------------cCCCEEEEECCCCCCcCe
Confidence 2 23344566778774 79999999999999999999999999999753 589999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEec
Q 010065 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSP 318 (519)
Q Consensus 239 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P 318 (519)
++++|.+++.. ....+++||||+|+|+++.+++|++....+.....+. .+.+....+.|
T Consensus 142 ~~v~~~~~~~~-------------~~~~~~~ee~i~g~e~sv~~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~p 200 (363)
T 4ffl_A 142 RIIYDDKDLEG-------------LEPDTLVEEYVEGEVVSLEVVGDGSHFAVVKETLVHI--------DETYDCHMVTP 200 (363)
T ss_dssp EEEC------C-------------CCTTCEEEECCCSEEEEEEEEEESSCEEECCCEEEEE--------CTTSCEEEEEE
T ss_pred EEeccHHHhhh-------------hccchhhhhhccCcEEEEEEEEECCeEEEEEEEEecc--------CCcccceeecc
Confidence 99999887642 4578999999999999999999877555444333321 12334567788
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 319 APVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 319 ~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
++ ..+++. +.+ .++++++++. |++++||++++++ +||+|+|||+|+.....+...+|+|++++++++
T Consensus 201 ~~-~~~~~~----~~a----~~~~~~l~~~--G~~~vef~~~~~~--~~viEiN~R~~g~~~~~~~~~~g~dl~~~~~~~ 267 (363)
T 4ffl_A 201 LP-ANPLFR----QIS----HDLAANLPLK--GIMDVEAIFGPKG--LRVIEIDARFPSQTPTVVYYSSGINLIELLFRA 267 (363)
T ss_dssp CC-CCHHHH----HHH----HHHHHTTTCE--EEEEEEEEEETTE--EEEEEEECSCCSSHHHHHHHHHCCCHHHHHHHH
T ss_pred hh-HHHHHH----HHH----HHHHHhCCcc--ceeeeeeEEeCCe--EEEEEEeCCCCCChHHHHHHHHCcCHHHHHHHH
Confidence 87 565433 333 2445677755 9999999999876 999999999876544466677899999999999
Q ss_pred HhCCCCCCCcccCCCcE-EEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEec
Q 010065 399 CRGELTGVTLNWSPGSA-MVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKG 477 (519)
Q Consensus 399 ~~g~~~~~~~~~~~~~a-~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g 477 (519)
++|.+.+......++.+ ...+...++ +.....+ +.+....+++..|+..... .+.+.+.++|+++|+++|
T Consensus 268 ~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~vi~~G 338 (363)
T 4ffl_A 268 FTDGVEEIRAIPENKYCIYEHLMFGEN-GVLIPVG------EQVLSMGSDYGKFYEEPGI--EIFLCKGEYPVFTMVFWG 338 (363)
T ss_dssp TTTCCCCC----CCCEEEEEEEEECGG-GBEEECC------HHHHTTCSEEEEEEEETTE--EEEEEESSSCEEEEEEEE
T ss_pred HCCCCCCccccCCCceEEEEEEecCCC-CccCCCC------ceEEecCCCeeEEEecCCC--CCEecCCCCceEEEEEEE
Confidence 99986554433333444 334444332 1111111 2222223445555543221 244667889999999999
Q ss_pred CCHHHHHHHHHHHhhccccC
Q 010065 478 KDVEEAQDRAYLAVEEINWP 497 (519)
Q Consensus 478 ~t~~ea~~~a~~~~~~i~~~ 497 (519)
+|++||+++++++++.|+.+
T Consensus 339 ~~~~eA~~k~~~al~~i~~~ 358 (363)
T 4ffl_A 339 KDREETGAKRCKGLSVLKER 358 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998754
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=345.68 Aligned_cols=397 Identities=16% Similarity=0.155 Sum_probs=274.2
Q ss_pred ccEEEEEeCChhHHHHHHHHHhc--------CCCcEEEEec--C-CCC--CcCCCCCc-cccC----CCCCCHHHHHHHH
Q 010065 82 RVVVLVIGGGGREHALCYALKRS--------HSCDAVFCAP--G-NAG--ISNSGDAT-CIPD----LDVLDGDAVISFC 143 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~--------~g~~~v~~~~--~-~~~--~~~~~~~~-~v~~----~d~~d~~~l~~~~ 143 (519)
.++|||+|+|.....+++++++. .|++++.+.. + ++. ....++.. .++. -+..|.+.+++++
T Consensus 47 ~kkILI~g~g~~a~~iira~~~~G~~vi~~d~gi~~v~v~s~~D~~~~~~~~~~aD~~~~ip~~~~~~~y~d~~~l~~~a 126 (554)
T 1w96_A 47 ISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 126 (554)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCcceecccCceEEEEecccccccCChhhhhCCEEEEcCCCCccccccCHHHHHHHH
Confidence 46999999887767788888775 1444455432 1 111 11111111 1110 1446789999999
Q ss_pred HHcCCcEEEECC----ChhhHHHHHHHHHHCC--CCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeec---------
Q 010065 144 RKWSVGLVVVGP----EAPLVSGLANKLVKAG--IPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF--------- 208 (519)
Q Consensus 144 ~~~~id~Vi~g~----E~~~~~~~a~~le~~g--ip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v--------- 208 (519)
+++++|+|+++. |+..+ +..++++| ++++|++++++.+++||..++++++++|||+|++..+
T Consensus 127 ~~~~id~Vi~g~G~~sE~~~~---~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~ 203 (554)
T 1w96_A 127 ERADVDAVWAGWGHASENPLL---PEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDE 203 (554)
T ss_dssp HHTTCSEEECCSSTTTTCTHH---HHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECT
T ss_pred HHhCCCEEEECCCccccCHHH---HHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcCCccccccccccccc
Confidence 999999999963 77654 34589999 9999999999999999999999999999999998765
Q ss_pred -----------------CCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEe
Q 010065 209 -----------------TDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEE 271 (519)
Q Consensus 209 -----------------~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe 271 (519)
.+.+++.+++++++||+||||..++||+||+++++.+|+.++++.+... ..+..++|||
T Consensus 204 ~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~----~~~~~vlvEe 279 (554)
T 1w96_A 204 KTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE----IPGSPIFIMK 279 (554)
T ss_dssp TTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHH----STTCCEEEEE
T ss_pred cccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhh----ccCCCEEEEE
Confidence 7888888888899999999999999999999999999999999988753 1357899999
Q ss_pred ccCC-cEEEEEEEEeC-CeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 010065 272 FLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKF 349 (519)
Q Consensus 272 ~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~ 349 (519)
||+| +|+++.+++|+ +.++.+..... .+.++..++ ....|+..++++..+++.+.+ .++++++|+.
T Consensus 280 ~i~g~~e~sv~vl~d~~G~vv~l~~~~~--~~~~~~~k~-----~~~~P~~~l~~~~~~~i~~~a----~~~~~alg~~- 347 (554)
T 1w96_A 280 LAGRARHLEVQLLADQYGTNISLFGRDC--SVQRRHQKI-----IEEAPVTIAKAETFHEMEKAA----VRLGKLVGYV- 347 (554)
T ss_dssp CCCSCEEEEEEEEECTTSCEEEEEEEEE--EEEETTEEE-----EEEESCCSSCHHHHHHHHHHH----HHHHHHHTCC-
T ss_pred ecCCCcEEEEEEEEcCCCCEEEEeeeee--eeEeeccce-----eeeCCCcCCCHHHHHHHHHHH----HHHHHHcCCc-
Confidence 9996 89999999875 34443322100 001111111 124577657888888887765 4677888877
Q ss_pred eeEEEEEEEEE-cCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCCCC------------------cc-
Q 010065 350 VGVLYAGLMIE-KKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVT------------------LN- 409 (519)
Q Consensus 350 ~G~~~vdf~~~-~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~~~------------------~~- 409 (519)
|++++||+++ ++| ++||+|+|||+|++.. .+...+|+|+.++++++++|...... ..
T Consensus 348 -G~~~ve~~~~~~dg-~~~~iEiN~R~~g~~~-~~~~~~G~dl~~~~~~~a~G~~l~~~~~~~~~~g~~~~~~~~i~~~~ 424 (554)
T 1w96_A 348 -SAGTVEYLYSHDDG-KFYFLELNPRLQVEHP-TTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEF 424 (554)
T ss_dssp -EEEEEEEEECTTTC-CEEEEEEECSCCTTTH-HHHHHHCCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCTTC
T ss_pred -ceEEEEEEEECCCC-CEEEEEeeCCCCccee-hhhhhcCCCHHHHHHHHHcCCCcccccchhhhccCCccccccccccc
Confidence 9999999998 555 7999999999988743 23245799999999999999833211 10
Q ss_pred ------------cCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEEeeeeec-CCCcEEecCCeEEEEE
Q 010065 410 ------------WSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFHAGTALD-ADGNFIATGGRVLGVT 474 (519)
Q Consensus 410 ------------~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~rvg~vi 474 (519)
...++++...+.+..+... +..| .+..+... ..+++++ +.+...+ ..+.. .++|+++|+
T Consensus 425 ~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~p~~G-~i~~~~~~--~~~~v~~-~~~~~~g~~i~~~--~~~~~~~vi 498 (554)
T 1w96_A 425 KTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGG-TLHELNFR--SSSNVWG-YFSVGNNGNIHSF--SDSQFGHIF 498 (554)
T ss_dssp CSHHHHHHCCCCCCCSEEEEEEEEEECCCCSSCCCSS-SEEEECCS--SCSSEEE-EEEECCSCSSCSS--CSEEEEEEE
T ss_pred cccccccccccCCCCeEEEEEEEEccCCCCCcccCCe-EEeEEecC--CCCCEEE-eeecccCCccCCC--CCCceEEEE
Confidence 1224444333332221111 1111 12222110 1245544 3333221 11222 345999999
Q ss_pred EecCCHHHHHHHHHHHhhccccCCeeecccccc
Q 010065 475 AKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGW 507 (519)
Q Consensus 475 ~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~ 507 (519)
+.|+|.++|+++++++++.++++|. ||+||+.
T Consensus 499 ~~g~~~~eA~~~~~~al~~i~i~g~-~~~~i~~ 530 (554)
T 1w96_A 499 AFGENRQASRKHMVVALKELSIRGD-FRTTVEY 530 (554)
T ss_dssp EEESSHHHHHHHHHHHHHHHTTCC-----CCHH
T ss_pred EEeCCHHHHHHHHHHHHhccEEEee-ccCCHHH
Confidence 9999999999999999999999999 9999994
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=339.18 Aligned_cols=285 Identities=18% Similarity=0.227 Sum_probs=224.5
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCC
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDV 133 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~ 133 (519)
.+|||+||+||.|+||+||+.|+.. ++.+|++. |++++.++.++.
T Consensus 2 ~~m~v~vl~gg~s~e~~vs~~s~~~------------------v~~al~~~-g~~v~~i~~~~~---------------- 46 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSEKQVSIMTGNE------------------MIANLDKN-KYEIVPITLNEK---------------- 46 (307)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHH------------------HHHHSCTT-TEEEEEEECSSG----------------
T ss_pred CCcEEEEEeCCCCcchHhHHHHHHH------------------HHHHHHHC-CCEEEEEcccCc----------------
Confidence 4799999999999999999999765 67777666 898887754321
Q ss_pred CCHHHHHHHHHHcCCcEEEECC-----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeec
Q 010065 134 LDGDAVISFCRKWSVGLVVVGP-----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF 208 (519)
Q Consensus 134 ~d~~~l~~~~~~~~id~Vi~g~-----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v 208 (519)
+.+ +.+..++|+||+.. |++.++ ..++.+|+|++|++++++.+++||..++++++++|||+|++..+
T Consensus 47 ---~~~--~~~~~~~D~v~~~~~~~~ge~~~~~---~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~ 118 (307)
T 3r5x_A 47 ---MDL--IEKAKDIDFALLALHGKYGEDGTVQ---GTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIEL 118 (307)
T ss_dssp ---GGH--HHHTTTCSEEEECCCSHHHHSSHHH---HHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEE
T ss_pred ---hhH--HHhccCCCEEEEeCCCCCCcHHHHH---HHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEE
Confidence 001 11225899999953 666544 45999999999999999999999999999999999999999999
Q ss_pred CCHHHHHH-HHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC
Q 010065 209 TDPNAAKQ-YIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE 287 (519)
Q Consensus 209 ~~~~~~~~-~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~ 287 (519)
.+.+++.. +.+.++||+|+||..++||.||.++++.+|+.++++.++. .+..+||||||+|+|+++.++ +|+
T Consensus 119 ~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~------~~~~~lvee~i~G~e~~v~v~-~g~ 191 (307)
T 3r5x_A 119 TKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFE------WDSEVVIEKYIKGEEITCSIF-DGK 191 (307)
T ss_dssp ESSSCCCHHHHHHHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHH------HCSEEEEEECCCSEEEEEEEE-TTE
T ss_pred eChhhhhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh------cCCCEEEECCcCCEEEEEEEE-CCE
Confidence 88766543 6778999999999999999999999999999999998875 357999999999999999986 553
Q ss_pred eeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceE
Q 010065 288 NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPK 367 (519)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~ 367 (519)
.+++........++++..++..++.... |++ ++++..+++++.+ .+++.++|++ |++++||++++ + ++|
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~g~~~~-p~~-l~~~~~~~i~~~a----~~~~~~lg~~--G~~~vD~~~~~-g-~~~ 260 (307)
T 3r5x_A 192 -QLPIISIRHAAEFFDYNAKYDDASTIEE-VIE-LPAELKERVNKAS----LACYKALKCS--VYARVDMMVKD-G-IPY 260 (307)
T ss_dssp -ECCCEEEEEEEEEETTEEEEEEEEEEEE-ECC-CCHHHHHHHHHHH----HHHHHHTTCC--SEEEEEEEEET-T-EEE
T ss_pred -EeeEEEEEcCCcccChhhcCCCCCCeEe-cCC-CCHHHHHHHHHHH----HHHHHHhCCC--ceEEEEEEEEC-C-eEE
Confidence 4333333344456677766644444545 887 8999888888776 4688899987 99999999995 4 699
Q ss_pred EEEEeCCCCCCchHHHHH----HhCCCHHHHHHHHHh
Q 010065 368 LIEYNVRFGDPECQVLMV----RLESDLAEVLLAACR 400 (519)
Q Consensus 368 viEiN~R~G~~~~~~~~~----~~G~d~~~~~i~~~~ 400 (519)
++|||+|||++.. ++++ .+|+|+.+++.+++.
T Consensus 261 vlEiN~rpg~~~~-s~~~~~~~~~G~~~~~li~~ll~ 296 (307)
T 3r5x_A 261 VMEVNTLPGMTQA-SLLPKSADAAGIHYSKLLDMIIE 296 (307)
T ss_dssp EEEEESSCCCSTT-SHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCcc-CHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999998876 4444 349999998887764
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=344.87 Aligned_cols=388 Identities=18% Similarity=0.210 Sum_probs=279.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhc--------CCCcEEEEecC-----CCCCcCCCCCc-ccc----CCCCCCHHHHHHHH
Q 010065 82 RVVVLVIGGGGREHALCYALKRS--------HSCDAVFCAPG-----NAGISNSGDAT-CIP----DLDVLDGDAVISFC 143 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~--------~g~~~v~~~~~-----~~~~~~~~~~~-~v~----~~d~~d~~~l~~~~ 143 (519)
.+||||.|.|.....+++++++. .|++++.+... +......++.. .+. .-+..|.+.+++++
T Consensus 56 ~~kvLIanrGeiA~riira~r~lG~e~f~~e~Gi~tVav~s~~D~~~~a~~~~~ADe~v~i~~~~~~~syld~~~Il~~a 135 (587)
T 3jrx_A 56 IEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIA 135 (587)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHH
T ss_pred cCEEEEECChHHHHHHHHHHHHhhhccccccCCceEEEEecccccCcCChhhHhCCEEEEeCCCCccccccCHHHHHHHH
Confidence 46999999997666777777753 37888887421 11111112211 110 12566799999999
Q ss_pred HHcCCcEEEEC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee------------
Q 010065 144 RKWSVGLVVVG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT------------ 207 (519)
Q Consensus 144 ~~~~id~Vi~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~------------ 207 (519)
++.++|+|+|+ +|++. +++.++..|+|++|++++++.++.||..+|++++++|||+|++..
T Consensus 136 ~~~~vdaV~pG~GflsEn~~---~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~ 212 (587)
T 3jrx_A 136 KRIPVQAVWAGWGHASENPK---LPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDL 212 (587)
T ss_dssp HHTTCSEEECCSSTTTTCTH---HHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC-----
T ss_pred HHhCCCEEEeCCCccccCHH---HHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeeccccccccccccc
Confidence 99999999996 57764 456699999999999999999999999999999999999999876
Q ss_pred -----------------cCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEE
Q 010065 208 -----------------FTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIE 270 (519)
Q Consensus 208 -----------------v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvE 270 (519)
+.+.+++.++++++|||+||||..++||+||++|++.+|+.++++.+... ..+..++||
T Consensus 213 ~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~----~~~~~vlVE 288 (587)
T 3jrx_A 213 QQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLM 288 (587)
T ss_dssp -CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHH----STTCCEEEE
T ss_pred ccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhh----ccCCCEEEE
Confidence 78889999999999999999999999999999999999999999988753 135789999
Q ss_pred eccCC-cEEEEEEEEeC-CeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010065 271 EFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCK 348 (519)
Q Consensus 271 e~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~ 348 (519)
+||+| +|++|.++.|+ +.++.+..... .+.....++ ....|++.++++..+++.+.+. ++++++|+.
T Consensus 289 eyI~g~rei~V~vl~D~~G~vv~l~~rd~--siqrr~qk~-----ie~aPa~~l~~~~~~~i~~~A~----~~a~alGy~ 357 (587)
T 3jrx_A 289 KLAQHARHLEVQILADQYGNAVSLFGRDC--SIQRRHQKI-----VEEAPATIAPLAIFEFMEQCAI----RLAKTVGYV 357 (587)
T ss_dssp ECCCSCEEEEEEEEECSSSCEEEEEEEEE--EEESSSCEE-----EEEESCCSSCHHHHHHHHHHHH----HHHHHHTCC
T ss_pred EecCCCcEEEEEEEEcCCCCEEEEeeeec--cccccccce-----eEecCCCCCCHHHHHHHHHHHH----HHHHHcCCc
Confidence 99999 99999999975 34444432110 011111111 2346888679988888888764 677888876
Q ss_pred eeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCC-CC-----------------c--
Q 010065 349 FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTG-VT-----------------L-- 408 (519)
Q Consensus 349 ~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~-~~-----------------~-- 408 (519)
|++++||+++++| ++||+|||||++++.. .....+|+|++++++++++|.... .. .
T Consensus 358 --G~~~VEfl~d~dG-~~yflEINpRl~~e~~-vte~~tGvdlv~~~lria~G~pL~~~~di~~~~~~~~~~~~~~~~~~ 433 (587)
T 3jrx_A 358 --SAGTVEYLYSQDG-SFHFLELNPRLQVEHP-CTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFET 433 (587)
T ss_dssp --EEEEEEEEECSSS-CEEEEEEESSCCTTHH-HHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCSSS
T ss_pred --ceeEEEEEEeCCC-CEEEEEEeCCCCCccc-eeccccCCCHHHHHHHHHCCCCcccchhccccccccccccccccccc
Confidence 9999999999876 8999999999987654 444567999999999999998432 00 0
Q ss_pred ----ccCCCcEEEEEEecCCCCC-C--CCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEe-cCCeEEEEEEecCCH
Q 010065 409 ----NWSPGSAMVVVMASKGYPG-S--YEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIA-TGGRVLGVTAKGKDV 480 (519)
Q Consensus 409 ----~~~~~~a~~~~l~~~~~~~-~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~rvg~vi~~g~t~ 480 (519)
....++++.+.+..+. |. . +..| .|..+... ..++++.+.... ..|.+.. .+..++.++++|.|+
T Consensus 434 ~~~~~~~~ghaie~Ri~aed-p~~~f~p~~G-~i~~~~~~--~~~~v~~~~~~~---~~~~~~~~yd~~~~k~i~~g~~r 506 (587)
T 3jrx_A 434 PSNPPLARGHVIAARITSEN-PDEGFKPSSG-TVQELNFR--SSKNVWGYFSVA---ATGGLHEFADSQFGHCFSWGENR 506 (587)
T ss_dssp CSSCCCCCSEEEEEEEEC-----------CC-CCEEEECS--SCTTEEEEECCC-------------CCEEEEEEEESSH
T ss_pred ccccCCCCceEEEEeecccC-ccccCCCCCc-EEEEEEeC--CCCceEEecccc---ccCCcCcccCcccceEEEEcCCH
Confidence 1234788888766654 21 1 1111 12222110 123444332111 1222222 367789999999999
Q ss_pred HHHHHHHHHHhhccccCC
Q 010065 481 EEAQDRAYLAVEEINWPG 498 (519)
Q Consensus 481 ~ea~~~a~~~~~~i~~~g 498 (519)
++|++++.++++.+.+.|
T Consensus 507 ~~a~~~~~~al~~~~i~g 524 (587)
T 3jrx_A 507 EEAISNMVVALKELSIRG 524 (587)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhccEEeC
Confidence 999999999999999999
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=325.31 Aligned_cols=360 Identities=14% Similarity=0.148 Sum_probs=268.5
Q ss_pred CCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC-CCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 79 AGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA-GISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 79 ~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~-~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
+...++|+|+|+|...+.+++++++. |+++++++++.. .....++ ..+ ..+..|.+.+.+++++ +|+|.++.|+
T Consensus 9 ~~~~~~IlIlG~G~lg~~la~aa~~l-G~~viv~d~~~~~p~~~~ad-~~~-~~~~~d~~~l~~~~~~--~dvi~~~~E~ 83 (377)
T 3orq_A 9 LKFGATIGIIGGGQLGKMMAQSAQKM-GYKVVVLDPSEDCPCRYVAH-EFI-QAKYDDEKALNQLGQK--CDVITYEFEN 83 (377)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCTTCTTGGGSS-EEE-ECCTTCHHHHHHHHHH--CSEEEESSTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCChhhhhCC-EEE-ECCCCCHHHHHHHHHh--CCcceecccc
Confidence 34568999999998888889988877 999999986532 2222222 223 4677889999999876 7888888777
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC-CCC
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA-AGK 236 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~-gs~ 236 (519)
.....+ +.++..+ .++++++++.+++||..+|++|+++|||+|++..+.+.+++.++++++|||+|+||..++ +|+
T Consensus 84 ~~~~~l-~~l~~~~--~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~ 160 (377)
T 3orq_A 84 ISAQQL-KLLCEKY--NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGK 160 (377)
T ss_dssp SCHHHH-HHHHHHS--CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHHTCSSEEEEESSSCCTTT
T ss_pred cCHHHH-HHHhhhc--CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcCCCEEEEeCCCCCCCC
Confidence 655433 3444433 235999999999999999999999999999999999999999999999999999999997 899
Q ss_pred cEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEe-CCeeEEeccccccccccCCCCCCCCCCce
Q 010065 237 GVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVD-GENAIPLESAQDHKRVGDGDTGPNTGGMG 314 (519)
Q Consensus 237 GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~d-g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (519)
|++++++.+|+.++++.+. ...+|||+||+| +|+++.++++ ++.+..++....... + +. ...
T Consensus 161 Gv~~v~~~~el~~a~~~~~--------~~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~~~~e~~~~--~---g~---~~~ 224 (377)
T 3orq_A 161 GQVLINNEKDLQEGFKLIE--------TSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHR--N---QI---LFK 224 (377)
T ss_dssp TEEEECSTTSHHHHHHHHT--------TSCEEEEECCCEEEEEEEEEEECGGGCEEECCCEEEEEE--T---TE---EEE
T ss_pred CeEEECCHHHHHHHHHhcC--------CCcEEEEccCCCCEEEEEEEEEeCCCCEEEECCEeEEEE--C---CE---EEE
Confidence 9999999999999998873 378999999999 9999999964 333444443322111 0 00 124
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEV 394 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~ 394 (519)
.+.|+. +++ .+++++.+ .+++.++|+. |++++||+++++| ++||+|||||||++.++++. .++.+.+++
T Consensus 225 ~~~Pa~-l~~--~~~~~~~a----~~i~~~lg~~--G~~~ve~~~~~~g-~~~v~EinpR~~~sg~~t~~-~~~~s~f~~ 293 (377)
T 3orq_A 225 TIVPAR-IDK--TAEAKEQV----NKIIQSIHFI--GTFTVEFFIDSNN-QLYVNEIAPRPHNSGHYSIE-ACDYSQFDT 293 (377)
T ss_dssp EEESCS-SCC--HHHHHHHH----HHHHTTSCCC--EEEEEEEEEETTC-CEEEEEEESSCCGGGTTHHH-HBSSCHHHH
T ss_pred EECCCC-CCH--HHHHHHHH----HHHHHHCCCe--EEEEEEEEEeCCC-cEEEEEeeCCcCCCCcEeeh-hcCCCHHHH
Confidence 567887 666 55666665 4677888875 9999999999776 79999999999998886654 579999999
Q ss_pred HHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEE
Q 010065 395 LLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVT 474 (519)
Q Consensus 395 ~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi 474 (519)
+++.++|......+......++.++++.. ..+++++....++++++++|... ...+.++|||+
T Consensus 294 ~~ra~~G~pl~~~~~~~~~~~m~n~lg~~-----------~~~~~~~~~~~~~~~~~~ygk~~------~~~~rkmGhv~ 356 (377)
T 3orq_A 294 HILAVTGQSLPNSIELLKPAVMMNLLGKD-----------LDLLENEFNEHPEWHLHIYGKSE------RKDSRKMGHMT 356 (377)
T ss_dssp HHHHHTTCCCCSCCCBSSCEEEEEEEHHH-----------HHHHGGGGGGCGGGCEEECCCSS------CCTTSEEEEEE
T ss_pred HHHHHcCCCCCccccccccEEEEEEeCcc-----------chhHHHHHhhCCCCEEEECCCCC------CCCCCeeEEEE
Confidence 99999997432202222235666776642 22334443334677777776532 12346689999
Q ss_pred EecCCHHHHHHHHHHH
Q 010065 475 AKGKDVEEAQDRAYLA 490 (519)
Q Consensus 475 ~~g~t~~ea~~~a~~~ 490 (519)
+.|+|.+++++++.+-
T Consensus 357 ~~~~~~~~~~~~~~~~ 372 (377)
T 3orq_A 357 VLTNDVNQTEQDMYAK 372 (377)
T ss_dssp EECSCHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHhHHh
Confidence 9999999999988764
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=342.56 Aligned_cols=408 Identities=17% Similarity=0.195 Sum_probs=276.6
Q ss_pred ccEEEEEeCChhHHHHHHHHHhc--------CCCcEEEEecC-----CCCCcCCCCCc-ccc----CCCCCCHHHHHHHH
Q 010065 82 RVVVLVIGGGGREHALCYALKRS--------HSCDAVFCAPG-----NAGISNSGDAT-CIP----DLDVLDGDAVISFC 143 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~--------~g~~~v~~~~~-----~~~~~~~~~~~-~v~----~~d~~d~~~l~~~~ 143 (519)
.+||||.|.|.....+++++++. .|++++.+... +......++.. .+. .-+..|.+.+++++
T Consensus 40 ~~kvLianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i~~~~~~~sy~d~~~ii~~a 119 (540)
T 3glk_A 40 IEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIA 119 (540)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHH
T ss_pred ccEEEEECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCEEEEeCCCCcccccccHHHHHHHH
Confidence 46999999997666777777753 37888887421 11111112211 110 12566789999999
Q ss_pred HHcCCcEEEECC----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee------------
Q 010065 144 RKWSVGLVVVGP----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT------------ 207 (519)
Q Consensus 144 ~~~~id~Vi~g~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~------------ 207 (519)
++.++|+|+|+. |++. +++.++..|+|++|++++++.++.||..+|++++++|||+|++..
T Consensus 120 ~~~~~daI~pg~gflsE~~~---~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~ 196 (540)
T 3glk_A 120 KRIPVQAVWAGWGHASENPK---LPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDL 196 (540)
T ss_dssp HHTTCSEEECCSSGGGGCTH---HHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC
T ss_pred HHhCCCEEEeCCCccccCHH---HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCccccccccccccccc
Confidence 999999999963 5543 566699999999999999999999999999999999999999877
Q ss_pred -----------------cCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEE
Q 010065 208 -----------------FTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIE 270 (519)
Q Consensus 208 -----------------v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvE 270 (519)
+.+.+++.++++++|||+||||..++||+|++++++.+|+.++++.+... ..+..++||
T Consensus 197 ~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~----~~~~~vlVE 272 (540)
T 3glk_A 197 QQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLM 272 (540)
T ss_dssp ----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHHHHH----STTCCEEEE
T ss_pred ccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhh----ccCCCEEEE
Confidence 78889999999999999999999999999999999999999999988753 135789999
Q ss_pred eccCC-cEEEEEEEEeC-CeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010065 271 EFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCK 348 (519)
Q Consensus 271 e~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~ 348 (519)
+||+| +|++|.++.|+ +.++.+..... .+.....++ ....|++.++++..+++.+.+. ++++++|+.
T Consensus 273 e~I~g~rei~V~vl~d~~G~vv~l~~rd~--s~qr~~~k~-----ie~~Pa~~l~~~~~~~l~~~a~----~~~~alG~~ 341 (540)
T 3glk_A 273 KLAQHARHLEVQILADQYGNAVSLFGRDC--SIQRRHQKI-----VEEAPATIAPLAIFEFMEQCAI----RLAKTVGYV 341 (540)
T ss_dssp ECCSSEEEEEEEEEECTTSCEEEEEEEEE--EEC---CCS-----EEEESCTTSCHHHHHHHHHHHH----HHHHHHTCC
T ss_pred EecCCCcEEEEEEEEcCCCCEEEEeceee--eeeecccce-----EEecCCCCCCHHHHHHHHHHHH----HHHHHcCCc
Confidence 99999 99999999975 34444432111 111111111 2346888679988888888764 677888876
Q ss_pred eeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCC-CC-----------------c--
Q 010065 349 FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTG-VT-----------------L-- 408 (519)
Q Consensus 349 ~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~-~~-----------------~-- 408 (519)
|++++||+++++| ++||+|||||++++.. .....+|+|++++++++++|.... .. .
T Consensus 342 --G~~~VEf~~d~dg-~~~~lEiNpR~~~~~~-vte~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~~~~~~~~~ 417 (540)
T 3glk_A 342 --SAGTVEYLYSQDG-SFHFLELNPRLQVEHP-CTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFET 417 (540)
T ss_dssp --EEEEEEEEEETTS-CEEEEEEECSCCTTHH-HHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSCCSCCCSCC
T ss_pred --cceEEEEEEcCCC-CEEEEEEECCCCCcch-hhHhHhCCCHHHHHHHHHCCCCccccccccccccccccccccccccc
Confidence 9999999999876 8999999999988654 444567999999999999998432 00 0
Q ss_pred ----ccCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEe-cCCeEEEEEEecCCHH
Q 010065 409 ----NWSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIA-TGGRVLGVTAKGKDVE 481 (519)
Q Consensus 409 ----~~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~rvg~vi~~g~t~~ 481 (519)
....++++...+..+.-... +..| .|..+.-. ..++++.+.. .. ..|.+.. .+..++.|+++|.|++
T Consensus 418 ~~~~~~~~g~aie~ri~aedp~~~f~p~~G-~i~~~~~~--~~~~v~~~~~-~~--~~~~~~~~yd~~~~k~i~~g~~r~ 491 (540)
T 3glk_A 418 PSNPPLARGHVIAARITSENPDEGFKPSSG-TVQELNFR--SSKNVWGYFS-VA--ATGGLHEFADSQFGHCFSWGENRE 491 (540)
T ss_dssp C----CCCSEEEEEEEC------------C-CEEECCCS--SCCSEEEEEE-C--------------CEEEEEEEESSHH
T ss_pred ccccCCCceeEEEEEEeccCCcccccCCce-EEEEEEcC--CCCcEEEEec-cc--cCCCCCCccCcccceEEEEcCCHH
Confidence 12347888876666531111 1111 22222110 1234443321 11 1232222 3677899999999999
Q ss_pred HHHHHHHHHhhccccCCe------eecccccccccccccccc
Q 010065 482 EAQDRAYLAVEEINWPGG------FYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 482 ea~~~a~~~~~~i~~~g~------~~r~dig~~~~~~~~~~~ 517 (519)
+|++++.++++.+.+.|. |.++=+.++.|...++.|
T Consensus 492 ~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~~~~~t 533 (540)
T 3glk_A 492 EAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDT 533 (540)
T ss_dssp HHHHHHHHHHHHHTCC----HHHHHHHHHHHSHHHHHTCC--
T ss_pred HHHHHHHHHHhccEEecccCCcHHHHHHHhCChhhcCCCccc
Confidence 999999999999999993 444444455555544444
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-38 Score=322.56 Aligned_cols=362 Identities=17% Similarity=0.102 Sum_probs=271.2
Q ss_pred CCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChh
Q 010065 80 GQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAP 158 (519)
Q Consensus 80 ~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~ 158 (519)
...++|+|+|+|.....+++++++. |+++++++++... ....++ ..+ ..+..|.+.+.+++++ .|+|.++.|..
T Consensus 12 ~~~k~IlIlG~G~~g~~la~aa~~~-G~~vi~~d~~~~~~~~~~ad-~~~-~~~~~d~~~l~~~~~~--~dvI~~~~e~~ 86 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRMMALAAKEM-GYKIAVLDPTKNSPCAQVAD-IEI-VASYDDLKAIQHLAEI--SDVVTYEFENI 86 (389)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSTTCTTTTTCS-EEE-ECCTTCHHHHHHHHHT--CSEEEESCCCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCCCCchHHhCC-ceE-ecCcCCHHHHHHHHHh--CCEeeeccccc
Confidence 3567999999998777888888866 9999999865322 122222 222 4577788899988864 68888876654
Q ss_pred hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCC-CCc
Q 010065 159 LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAA-GKG 237 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~g-s~G 237 (519)
.. .+++.+++.|+ +|++++++.+++||..++++|+++|||+|++..+.+.+++.++++++|||+|+||..+++ |+|
T Consensus 87 ~~-~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~G 163 (389)
T 3q2o_A 87 DY-RCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAELSYPSVLKTTTGGYDGKG 163 (389)
T ss_dssp CH-HHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSEEEEESSCCSSSCC
T ss_pred cH-HHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCCC
Confidence 33 45667887786 589999999999999999999999999999999999999999999999999999999975 799
Q ss_pred EEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCCCCCCCCCCceE
Q 010065 238 VIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDGDTGPNTGGMGA 315 (519)
Q Consensus 238 V~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 315 (519)
+.++++.+|+.++++.+. +..+|||+||+| +|+++.+++|+ +.+..++....... .+. ....
T Consensus 164 v~~v~~~~el~~~~~~~~--------~~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~~~~e~~~~-----~g~---~~~~ 227 (389)
T 3q2o_A 164 QVVLRSEADVDEARKLAN--------AAECILEKWVPFEKEVSVIVIRSVSGETKVFPVAENIHV-----NNI---LHES 227 (389)
T ss_dssp EEEESSGGGHHHHHHHHH--------HSCEEEEECCCCSEEEEEEEEECTTCCEEECCCEEEEEE-----TTE---EEEE
T ss_pred eEEECCHHHHHHHHHhcC--------CCCEEEEecccCceEEEEEEEEcCCCCEEEecCeeeEEc-----CCc---eEEE
Confidence 999999999999988763 368999999998 99999999863 23443433321111 011 1245
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHH
Q 010065 316 YSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVL 395 (519)
Q Consensus 316 ~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~ 395 (519)
+.|+. ++++..+++++.+ .+++.++|+. |++++||+++++| ++||+|+|||||++.++. ...+|+|+++++
T Consensus 228 ~~p~~-l~~~~~~~~~~~a----~~~~~~lg~~--G~~~ve~~~~~dg-~~~viEiNpR~~~s~~~~-~~~~g~~~~~~~ 298 (389)
T 3q2o_A 228 IVPAR-ITEELSQKAIAYA----KVLADELELV--GTLAVEMFATADG-EIYINELAPRPHNSGHYT-QDACETSQFGQH 298 (389)
T ss_dssp EESCS-SCHHHHHHHHHHH----HHHHHHTTCC--EEEEEEEEECTTS-CEEEEEEESSCCGGGTTH-HHHBSSCHHHHH
T ss_pred ECCCC-CCHHHHHHHHHHH----HHHHHHcCCe--eEEEEEEEEeCCC-CEEEEEeeCCCCCchhHH-HHHcCCCHHHHH
Confidence 67887 8999888888876 4677888875 9999999999876 799999999999988754 456799999999
Q ss_pred HHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEE
Q 010065 396 LAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTA 475 (519)
Q Consensus 396 i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~ 475 (519)
+++++|..... +.......+..+++.. ++.........+++.++.+|... ...+.++|+|++
T Consensus 299 ~r~~lg~~l~~-~~~~~~~~~~~~~g~~-----------~~~~~~~~~~~p~~~~~lygk~~------~~~~r~~G~v~~ 360 (389)
T 3q2o_A 299 IRAICNLPLGE-TNLLKPVVMVNILGEH-----------IEGVLRQVNRLTGCYLHLYGKEE------AKAQRKMGHVNI 360 (389)
T ss_dssp HHHHHTCCCCC-CCBCSCEEEEEEEHHH-----------HHHHHHTGGGCTTEEEEECCCSS------CCTTSEEEEEEE
T ss_pred HHHHcCCCCCC-ccccCcEEEEEEecCc-----------hhhHHHHHHhCCCCEEEECCCCC------CCCCCeeEEEEE
Confidence 99999984322 2222224444544321 12222222224677777766532 123567899999
Q ss_pred ecCCHHHHHHHHHHHhh
Q 010065 476 KGKDVEEAQDRAYLAVE 492 (519)
Q Consensus 476 ~g~t~~ea~~~a~~~~~ 492 (519)
.|+|.++|.+++..+.-
T Consensus 361 ~~~~~~~a~~~a~~~~~ 377 (389)
T 3q2o_A 361 LNDNIEVALEKAKSLHI 377 (389)
T ss_dssp ECSSHHHHHHHHHHTTS
T ss_pred EcCCHHHHHHHHHHhCc
Confidence 99999999999988743
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=320.51 Aligned_cols=285 Identities=20% Similarity=0.221 Sum_probs=229.5
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCC
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVL 134 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~ 134 (519)
+|||+|++||.|.||++|+.|+.. ++.++++. |++++.+++++... ..
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~------------------l~~al~~~-G~~v~~~~~~~~~~------~~------- 49 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAA------------------VLAGLREG-GIDAYPVDPKEVDV------TQ------- 49 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHH------------------HHHHHHHT-TCEEEEECTTTSCG------GG-------
T ss_pred CcEEEEEeCCCCccceEcHHhHHH------------------HHHHHHHC-CCeEEEEecCchHH------HH-------
Confidence 479999999999999999987654 68888776 99998886542110 00
Q ss_pred CHHHHHHHHHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecC
Q 010065 135 DGDAVISFCRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT 209 (519)
Q Consensus 135 d~~~l~~~~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~ 209 (519)
+...++|+|++. +|++.++ ..++.+|+|++|++++++.+++||..++++|+++|||+|++..+.
T Consensus 50 --------~~~~~~d~v~~~~~~~~~e~~~~~---~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~ 118 (306)
T 1iow_A 50 --------LKSMGFQKVFIALHGRGGEDGTLQ---GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 (306)
T ss_dssp --------TTTTTEEEEEECCCSTTTSSSHHH---HHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEE
T ss_pred --------hhccCCCEEEEcCCCCCCcchHHH---HHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEEEc
Confidence 112578999984 3777554 458889999999999999999999999999999999999999988
Q ss_pred CHHHHHH--------HHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEE
Q 010065 210 DPNAAKQ--------YIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFF 281 (519)
Q Consensus 210 ~~~~~~~--------~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~ 281 (519)
+. ++.+ +.++++||+|+||..+++|.||.++++.+|+.++++.++. .+..++|||||+|+|+++.
T Consensus 119 ~~-~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~------~~~~~lvee~i~g~e~~v~ 191 (306)
T 1iow_A 119 RA-EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ------HDEEVLIEKWLSGPEFTVA 191 (306)
T ss_dssp HH-HHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTT------TCSEEEEEECCCCCEEEEE
T ss_pred hh-hhhccchhhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh------hCCCEEEEeCcCCEEEEEE
Confidence 77 6665 6778999999999999999999999999999999988752 3578999999999999999
Q ss_pred EEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEc
Q 010065 282 ALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEK 361 (519)
Q Consensus 282 ~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~ 361 (519)
++ +| .++++........+++++.+++.|++.+..|+. ++++..+++.+.+ .++++++|+. |++++||++++
T Consensus 192 ~~-~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a----~~~~~~lg~~--G~~~vD~~~~~ 262 (306)
T 1iow_A 192 IL-GE-EILPSIRIQPSGTFYDYEAKFLSDETQYFCPAG-LEASQEANLQALV----LKAWTTLGCK--GWGRIDVMLDS 262 (306)
T ss_dssp EE-TT-EECCCEEEECSSSSSCHHHHHTCSCCEEESSCC-CCHHHHHHHHHHH----HHHHHHHTCC--SEEEEEEEECT
T ss_pred EE-CC-CccceEEEEeCCCeEchhheecCCCeeEEcCCC-CCHHHHHHHHHHH----HHHHHHcCCc--eEEEEEEEEcC
Confidence 88 54 343333332333455555566677788888998 8988888888766 4677888985 99999999998
Q ss_pred CCCceEEEEEeCCCCCCchHHHH----HHhCCCHHHHHHHHHh
Q 010065 362 KSGLPKLIEYNVRFGDPECQVLM----VRLESDLAEVLLAACR 400 (519)
Q Consensus 362 ~g~~~~viEiN~R~G~~~~~~~~----~~~G~d~~~~~i~~~~ 400 (519)
+| ++|++|||+|||++.+ +++ ..+|+|+.+++.+++.
T Consensus 263 ~g-~~~~iEiN~rpg~~~~-s~~p~~~~~~G~~~~~~~~~~~~ 303 (306)
T 1iow_A 263 DG-QFYLLEANTSPGMTSH-SLVPMAARQAGMSFSQLVVRILE 303 (306)
T ss_dssp TS-CEEEEEEESSCCCSTT-CHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CC-CEEEEEecCCCCCCCC-CHHHHHHHHcCCCHHHHHHHHHH
Confidence 77 7999999999998765 333 3459999999998765
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=359.35 Aligned_cols=409 Identities=15% Similarity=0.178 Sum_probs=233.3
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC--CC-cCCCCCcc-cc----CCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA--GI-SNSGDATC-IP----DLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~--~~-~~~~~~~~-v~----~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.+||||+|.|.....+++++++. |++++.++.+.. .. ...++... +. .-+..|.+.+++++++.++|+|+|
T Consensus 31 ~kkILI~grGeia~~iiraar~l-Gi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI~p 109 (1236)
T 3va7_A 31 FETVLIANRGEIAVRIMKTLKRM-GIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIP 109 (1236)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHH-TCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEEEC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHC-CCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEEEE
Confidence 46899999997777788888877 999988854311 11 11111111 10 124567899999999999999999
Q ss_pred CCChhh-HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC-eeecCCHHHHHHHHHHhCCCEEEEeCC
Q 010065 154 GPEAPL-VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK-YKTFTDPNAAKQYIQEEGAPIVVKADG 231 (519)
Q Consensus 154 g~E~~~-~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~-~~~v~~~~~~~~~~~~~g~P~VvKP~~ 231 (519)
+.+... ...+++.+++.|++++|++++++.++.||..+|++++++|||+|+ +..+.+.+++.++++++|||+||||..
T Consensus 110 g~g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~v~s~eea~~~a~~iGyPvVVKP~~ 189 (1236)
T 3va7_A 110 GYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVAKKLEYPVMVKSTA 189 (1236)
T ss_dssp CSSGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC----------------------------
T ss_pred CCccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEecCCHHHHHHHHHHcCCCEEEEeCC
Confidence 642111 125678899999999999999999999999999999999999988 467888889988899999999999999
Q ss_pred CCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCCCCC
Q 010065 232 LAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDGDTG 307 (519)
Q Consensus 232 g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~ 307 (519)
++||+||+++++.+|+.++++.+... ..+ .+..++|||||+| +|+++.++.|+. .++.+.... . .......
T Consensus 190 GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~--~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~~rd-~-s~qr~~~- 264 (1236)
T 3va7_A 190 GGGGIGLQKVDSEDDIERVFETVQHQGKSYF--GDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERD-C-SLQRRNQ- 264 (1236)
T ss_dssp ---------------------------------------------CCEEEEEEEEEESSSCEEEEEEEE-E-EEEETTE-
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHhcc--CCCcEEEeeccCCCeEEEEEEEecCCceEEEEeeee-e-eeeecCc-
Confidence 99999999999999999999887532 112 2467999999999 999999999875 444443211 1 0111111
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHh
Q 010065 308 PNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRL 387 (519)
Q Consensus 308 ~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~ 387 (519)
......|++.++++..+++.+.+. ++++++|+. |++++||+++++++++||||||||++++.. .....+
T Consensus 265 ----k~~e~~Pa~~l~~~~~~~l~~~a~----~~~~alg~~--G~~~VEfivd~d~g~~y~iEINpRl~g~~~-~te~vt 333 (1236)
T 3va7_A 265 ----KVIEETPAPNLPEATRAKMRAASE----RLGSLLKYK--CAGTVEFIYDEQRDEFYFLEVNARLQVEHP-ITEMVT 333 (1236)
T ss_dssp ----EEEEEESCSSCCHHHHHHHHHHHH----HHHHHTTCE--EEEEEEEEEETTTTEEEEEEEECSCCTTHH-HHHHHH
T ss_pred ----ceEEEcCCCCCCHHHHHHHHHHHH----HHHHHcCCc--ceEEEEEEEECCCCcEEEEEEECCCCCccH-HHHHHH
Confidence 124467887689999888888774 577788866 999999999985337999999999987553 444457
Q ss_pred CCCHHHHHHHHHhCCCCCCC-ccc-CCCcEEEEEEecCCCCCCC-CCCcccccchhhhccCCCeEEEEeeeeecCCCcEE
Q 010065 388 ESDLAEVLLAACRGELTGVT-LNW-SPGSAMVVVMASKGYPGSY-EKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFI 464 (519)
Q Consensus 388 G~d~~~~~i~~~~g~~~~~~-~~~-~~~~a~~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 464 (519)
|+|+.++++++++|...+.. ..+ ..++++.+.+.+..+...+ ...-.+..+. .+.++++... . ..|...
T Consensus 334 GvDlv~~~l~~a~G~~l~~~~~~~~~~g~Ai~~riyaedp~~~f~p~~G~i~~~~----~p~gvrvd~~-v---~~G~~V 405 (1236)
T 3va7_A 334 GLDLVEWMLRIAANDSPDFDNTKIEVSGASIEARLYAENPVKDFRPSPGQLTSVS----FPSWARVDTW-V---KKGTNV 405 (1236)
T ss_dssp CCCHHHHHHHHHTTCCCCGGGCCCCCCSEEEEEEEESEETTTTTEECCEECCEEE----CCTTSEEEEC-C---CTTCEE
T ss_pred CCCHHHHHHHHHCCCCCCCccccccccceEEEEEEecCCcccccCCCCceEEEEE----cCCccEeccc-c---cCCCEe
Confidence 99999999999999865432 122 3467777766654321111 0000111111 1233333221 1 234333
Q ss_pred e--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccc
Q 010065 465 A--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQF 515 (519)
Q Consensus 465 ~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~ 515 (519)
+ .+.+++.|++.|+|+++|+++++++++.++++|. |.|+-+.++.|...++
T Consensus 406 ~~~yds~la~vi~~g~~r~eA~~~~~~al~~~~i~G~~tn~~~~~~~~~~~~f~~~~~ 463 (1236)
T 3va7_A 406 SAEYDPTLAKIIVHGKDRNDAIMKLNQALNETAVYGCITNIDYLRSIASSKMFKEAKV 463 (1236)
T ss_dssp CSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESSCCSHHHHHHHHHCHHHHHTCC
T ss_pred CCCCCCceEEEEEEeCCHHHHHHHHHHHhhCEEEeCcccCHHHHHHHhCCHHHhCCCC
Confidence 2 4568999999999999999999999999999993 4444444454444443
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=345.03 Aligned_cols=392 Identities=18% Similarity=0.197 Sum_probs=225.4
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCC--cCCCCCc-ccc----CCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGI--SNSGDAT-CIP----DLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~--~~~~~~~-~v~----~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
+||||+|.|.....+++++++. |++++.++++. ... ...++.. .+. .-+..|.+.+++++++.++|+|+|+
T Consensus 3 ~kiLIanrGeia~riiraar~l-Gi~~vav~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~a~~~~~daI~pg 81 (681)
T 3n6r_A 3 NKILIANRGEIACRVIKTARKM-GISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHPG 81 (681)
T ss_dssp CCBCBSCCHHHHHHHHHHHGGG-SCCBCCEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHHHHHTCCSCCBCC
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCEEEEEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHHHHHhCcCEEEEC
Confidence 5899999997667778888776 99998885432 111 1111111 110 1255678999999999999999996
Q ss_pred ----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEEE
Q 010065 155 ----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 155 ----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~VvK 228 (519)
+|+. .+++.+++.|++++|++++++.++.||..+|++++++|||+|++. .+.+.+++.++++++|||+|+|
T Consensus 82 ~gflsE~~---~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~igyPvVvK 158 (681)
T 3n6r_A 82 YGFLSENS---KFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIK 158 (681)
T ss_dssp SSSSTTCH---HHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC-------------------------
T ss_pred CCccccCH---HHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhcCCcEEEE
Confidence 4665 467779999999999999999999999999999999999999975 6788889988899999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDG 304 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~ 304 (519)
|..++||+|++++++.+|+.++++.+... ..| .++.++||+||+| +|+++.++.|+. +++.+...... +...
T Consensus 159 p~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~f--g~~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~~rd~s--~qr~ 234 (681)
T 3n6r_A 159 ASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSF--GDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECS--IQRR 234 (681)
T ss_dssp ----------------------------------------------CCSCEEEEEEEECCSSSCCEEEEEEECC--CEET
T ss_pred ECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhC--CCCcEEEEeccCCCcEEEEEEEEeCCCCEEEEeeeecc--eecc
Confidence 99999999999999999999999887542 112 2468999999999 899999998753 45544431100 0000
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
.. ......|++.++++..+++.+.+. ++++++|+. |++++||+++++| ++||+|||||++++.. ...
T Consensus 235 ~~-----k~~e~~Pa~~l~~~~~~~l~~~a~----~~~~alg~~--G~~~vEf~~d~dg-~~~~lEiNpR~~~~~~-~te 301 (681)
T 3n6r_A 235 NQ-----KVVEEAPSPFLDEATRRAMGEQAV----ALAKAVGYA--SAGTVEFIVDGQK-NFYFLEMNTRLQVEHP-VTE 301 (681)
T ss_dssp TE-----ECEEEESCSSCCHHHHHHHHHHHH----HHHHTTTCC--SEEEEEEEECTTS-CCCCCEEECSCCTTHH-HHH
T ss_pred Cc-----cEEEecCCCCCCHHHHHHHHHHHH----HHHHHcCCC--ceEEEEEEEeCCC-CEEEEecccccCCCcH-HhH
Confidence 00 113456887789998888888774 577888866 9999999999876 8999999999987643 444
Q ss_pred HHhCCCHHHHHHHHHhCCCCCCCc--ccCCCcEEEEEEecCCCCCCC-CCCcccccchhhhcc-----------------
Q 010065 385 VRLESDLAEVLLAACRGELTGVTL--NWSPGSAMVVVMASKGYPGSY-EKGSEIQNLEEAEQV----------------- 444 (519)
Q Consensus 385 ~~~G~d~~~~~i~~~~g~~~~~~~--~~~~~~a~~~~l~~~~~~~~~-~~~~~i~~~~~~~~~----------------- 444 (519)
..+|+|++++++++++|...+... ....++++...+.+......+ ...-.+..+......
T Consensus 302 ~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~aedp~~~f~p~~G~i~~~~~p~~~~~~~~~~~~~w~~d~~~ 381 (681)
T 3n6r_A 302 LITGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPS 381 (681)
T ss_dssp HHHTCCHHHHHHHHHTSCCCSSCTTTCCCCSEEEEEEEESEEGGGTTEECCEECSCEECCCC------------------
T ss_pred HHhCCCHHHHHHHHHCCCCCCCCccccceeEEEEEEEEecCCcccccCCCCcEEEEEECCCCCccccccccccccccccc
Confidence 557999999999999998543321 123467776665543211100 000012111110000
Q ss_pred -CCCeEEEEeeeeecCCCcEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe
Q 010065 445 -APSVKIFHAGTALDADGNFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG 499 (519)
Q Consensus 445 -~~~~~~~~~~~~~~~~g~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~ 499 (519)
.+++++.. +. ..|...+ .+..++.+++.|.|+++|++++.++++.+.+.|.
T Consensus 382 ~~~~vr~d~-~~---~~g~~v~~~yd~~iak~i~~g~~r~~a~~~~~~al~~~~i~g~ 435 (681)
T 3n6r_A 382 GEAAVRNDT-GV---YEGGEISMYYDPMIAKLCTWAPTRAAAIEAMRIALDSFEVEGI 435 (681)
T ss_dssp --CCEEEEE-SC---CTTCEECTTSCCEEEEEEEEESSHHHHHHHHHHHHHHCEECSS
T ss_pred CCCcEEEEc-cc---cCCCccCCCCCCceeEEEEEcCCHHHHHHHHHHHHhcCEEECc
Confidence 01222211 11 2343333 3567899999999999999999999999999993
|
| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=303.89 Aligned_cols=331 Identities=14% Similarity=0.090 Sum_probs=248.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
++|+|||+|.....++.+.++. |+++ ++++.... . . .++ + ++|+|.+..|.-.. .
T Consensus 2 k~igilGgGqlg~m~~~aa~~l-G~~v--~~~~~~a~-----~-~--~~~------l-------~~d~it~e~e~v~~-~ 56 (355)
T 3eth_A 2 KQVCVLGNGQLGRMLRQAGEPL-GIAV--WPVGLDAE-----P-A--AVP------F-------QQSVITAEIERWPE-T 56 (355)
T ss_dssp CEEEEESCSHHHHHHHHHHGGG-TCEE--EEECTTCC-----G-G--GCC------C-------TTSEEEESCSCCCC-C
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEE--ECCCCCCC-----c-e--EEc------c-------cCCEEEECcCCcCH-H
Confidence 5699999997666667666655 9988 45442211 1 1 122 1 89999997664332 2
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCC-CCCCcEEEe
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGL-AAGKGVIVA 241 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g-~gs~GV~~v 241 (519)
..+.++..| + ++|+++++.+++||..+|++++++|||+|++..+++.+++.++++++|||+||||..+ ++|+|++++
T Consensus 57 ~l~~l~~~~-~-v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~v~~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v 134 (355)
T 3eth_A 57 ALTRQLARH-P-AFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRL 134 (355)
T ss_dssp HHHHHHHTC-T-TBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEE
T ss_pred HHHHHHhcC-C-cCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEEECCHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEE
Confidence 345577777 3 4799999999999999999999999999999999999999999999999999999985 788999999
Q ss_pred CC--HHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeCC-eeEEeccccccc--cccCCCCCCCCCCceE
Q 010065 242 MT--LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDGE-NAIPLESAQDHK--RVGDGDTGPNTGGMGA 315 (519)
Q Consensus 242 ~~--~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg~-~~~~~~~~~~~~--~~~~~~~~~~~g~~~~ 315 (519)
++ .+|+.+++ + + .+|||+||+ ++|+++.++++.. .+..++...... ..+. ..
T Consensus 135 ~~~~~~el~~a~--------~---~-~vivEe~I~~~~Eisv~v~~~~~G~~~~~p~~e~~~~~g~~~----------~~ 192 (355)
T 3eth_A 135 RANETEQLPAEC--------Y---G-ECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILR----------TS 192 (355)
T ss_dssp ETTCGGGSCGGG--------T---T-TEEEEECCCCSEEEEEEEEECTTSCEEECCCEEEEEETTEEE----------EE
T ss_pred cCCCHHHHHHHh--------h---C-CEEEEEccCCCcEEEEEEEEcCCCCEEEECCEEEEeeCCeEE----------EE
Confidence 99 99987632 1 2 699999999 5999999998532 344444332211 1111 23
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHH
Q 010065 316 YSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVL 395 (519)
Q Consensus 316 ~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~ 395 (519)
+.|+. ++++..+++++.+ .+++.++|+. |++++||++++++ +||+|+||||+++.++++. .+++|.++++
T Consensus 193 ~~pa~-l~~~~~~~~~~~a----~~i~~aLg~~--G~~~vEf~~~~~~--~~v~EinpR~~~sg~~t~~-~~~~s~fe~~ 262 (355)
T 3eth_A 193 VAFPQ-ANAQQQARAEEML----SAIMQELGYV--GVMAMECFVTPQG--LLINELAPRVHNSGHWTQN-GASISQFELH 262 (355)
T ss_dssp EECSS-CCHHHHHHHHHHH----HHHHHHHTCC--EEEEEEEEEETTE--EEEEEEESSCCGGGTTHHH-HSSSCHHHHH
T ss_pred ECCCC-CCHHHHHHHHHHH----HHHHHHCCCe--eEEEEEEEEECCc--EEEEEeeCCCCCCccEEee-eecCCHHHHH
Confidence 56776 8999888888876 4677888876 9999999999754 9999999999998886554 5799999999
Q ss_pred HHHHhCCCC-CCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEE
Q 010065 396 LAACRGELT-GVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVT 474 (519)
Q Consensus 396 i~~~~g~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi 474 (519)
+++++|... ++.+ .. ..++.++++.. ..+++.+ .++++++++|.. ...+.++|||+
T Consensus 263 ~ra~~G~pl~~~~~-~~-~~~m~nilg~~-------------~~~~~~~-~p~~~~~~ygk~-------~r~~rkmGhv~ 319 (355)
T 3eth_A 263 LRAITDLPLPQPVV-NN-PSVMINLIGSD-------------VNYDWLK-LPLVHLHWYDKE-------VRPGRKVGHLN 319 (355)
T ss_dssp HHHHTTCCCCCCCC-CS-CEEEEEEESCC-------------CCGGGGG-STTCEEEECCCC-------CCTTCEEEEEE
T ss_pred HHHHcCCCCCCccc-cC-ceEEEEEecch-------------HHHHHHh-CCCCEEEEcCCC-------CCCCCeeEEEE
Confidence 999999843 3222 22 25666666642 1233322 466777777652 13457799999
Q ss_pred EecCCHHHHHHHHHHHhhccc
Q 010065 475 AKGKDVEEAQDRAYLAVEEIN 495 (519)
Q Consensus 475 ~~g~t~~ea~~~a~~~~~~i~ 495 (519)
+.|+|.++++++++++.+.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~ 340 (355)
T 3eth_A 320 LTDSDTSRLTATLEALIPLLP 340 (355)
T ss_dssp EECSCHHHHHHHHHHHGGGSC
T ss_pred EEcCCHHHHHHHHHHHHHHhh
Confidence 999999999999999988764
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=348.44 Aligned_cols=394 Identities=20% Similarity=0.204 Sum_probs=229.9
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC---cCCCCCc-cccCC-------C----CCCHHHHHHHHHHcC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI---SNSGDAT-CIPDL-------D----VLDGDAVISFCRKWS 147 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~---~~~~~~~-~v~~~-------d----~~d~~~l~~~~~~~~ 147 (519)
+||||-..|.....+++++++. |++++.+++..... ...++.. .+... + ..|.+.|++++++.+
T Consensus 15 ~~~lianrGeia~riiraa~el-Gi~vvav~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~~ 93 (1165)
T 2qf7_A 15 SKILVANRSEIAIRVFRAANEL-GIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSG 93 (1165)
T ss_dssp CEEEECCCHHHHHHHHHHHHHT-TCEEEEEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHT
T ss_pred eEEEEcCCcHHHHHHHHHHHHc-CCEEEEEECCCcccchhHHhCCEEEEcCCcccccccCCccccccCHHHHHHHHHHhC
Confidence 4666666664556678888775 99999987542211 1111111 11000 1 125789999999999
Q ss_pred CcEEEECC----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHh
Q 010065 148 VGLVVVGP----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEE 221 (519)
Q Consensus 148 id~Vi~g~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~ 221 (519)
+|+|+|+. |+. .+++.++.+|+|++|++++++.++.||..+|++++++|||+|++. .+.+.+++.++++++
T Consensus 94 iD~V~pg~g~lsE~~---~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~i 170 (1165)
T 2qf7_A 94 ADAIHPGYGLLSESP---EFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAI 170 (1165)
T ss_dssp CSEEECCSSTTTTCH---HHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC--------------------
T ss_pred CCEEEECCCchhcCH---HHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhc
Confidence 99999963 444 467779999999999999999999999999999999999999998 688888888888999
Q ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEecccc-
Q 010065 222 GAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQ- 296 (519)
Q Consensus 222 g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~- 296 (519)
+||+|+||..++||+|++++++.+|+.++++.+... ..| .+..++||+||+| +|+++.++.|+. .++.+....
T Consensus 171 gyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~f--g~~~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~~ 248 (1165)
T 2qf7_A 171 GYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAF--GKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDC 248 (1165)
T ss_dssp ---------------------------------------------------CCCSSEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhc--CCCcEEEEEeccCCcEEEEEEEEcCCCcEEEEEeecc
Confidence 999999999999999999999999999999877532 112 1467999999995 999999999764 344332211
Q ss_pred ccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEE-cCCCceEEEEEeCCC
Q 010065 297 DHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIE-KKSGLPKLIEYNVRF 375 (519)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~-~~g~~~~viEiN~R~ 375 (519)
...+ ..+....+.|++.++++..+++.+.+ .++++++|+. |++++||+++ ++| ++||||||||+
T Consensus 249 s~~r--------~~~~~~e~~Pa~~l~~~~~~~i~~~a----~~i~~alg~~--G~~~vEf~vd~~dg-~~~~iEiNpR~ 313 (1165)
T 2qf7_A 249 SVQR--------RNQKVVERAPAPYLSEAQRQELAAYS----LKIAGATNYI--GAGTVEYLMDADTG-KFYFIEVNPRI 313 (1165)
T ss_dssp EEEE--------TTEEEEEEESCTTCCHHHHHHHHHHH----HHHHHHTTCC--EEEEEEEEEETTTT-EEEEEEEECSC
T ss_pred ccee--------cccceEEecccccCCHHHHHHHHHHH----HHHHHHcCCC--cceeEEEEEECCCC-CEEEEEEEcCC
Confidence 1111 01224567788668998888888866 4677888876 9999999999 666 79999999999
Q ss_pred CCCchHHHHHHhCCCHHHHHHHHHhCCCCC-CC--c-----ccCCCcEEEEEEecCCCCC---CCCCCcccccchhhhcc
Q 010065 376 GDPECQVLMVRLESDLAEVLLAACRGELTG-VT--L-----NWSPGSAMVVVMASKGYPG---SYEKGSEIQNLEEAEQV 444 (519)
Q Consensus 376 G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~-~~--~-----~~~~~~a~~~~l~~~~~~~---~~~~~~~i~~~~~~~~~ 444 (519)
+++.. .....+|+|+.++++++++|.... .. + ....++++.+.+...+ |. .+..+ .|..+... .
T Consensus 314 ~~~~~-vte~~tGiDl~~~~i~~a~G~~l~~~~~g~p~q~~~~~~g~Ai~~ri~ae~-P~~~f~p~~G-~I~~~~~~--~ 388 (1165)
T 2qf7_A 314 QVEHT-VTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTED-PEHNFIPDYG-RITAYRSA--S 388 (1165)
T ss_dssp CTTHH-HHHHHHCCCHHHHHHHHHTTCCTTSGGGTCCCGGGCCCCSEEEEEEEESEE-TTTTTEECCE-ECCEEECC--C
T ss_pred CCCch-hhhhhhCCCHHHHHHHHHcCCCccccccccccccccccCcEEEEEEEEecC-CccCcCCCCc-EEEEEecC--C
Confidence 88654 344567999999999999997332 21 1 1235677766665543 32 11112 23333221 0
Q ss_pred CCCeEEEEeeeeecCCCcEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCeeecccccc
Q 010065 445 APSVKIFHAGTALDADGNFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGW 507 (519)
Q Consensus 445 ~~~~~~~~~~~~~~~~g~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~ 507 (519)
.++++++ .+.. ..|...+ .+.++++|++.|+|+++|+++++++++.++++| ||+||+.
T Consensus 389 ~~gvrvd-~g~~--~~G~~v~~~~d~~l~~vi~~g~t~~eA~~~~~~al~~i~i~G--~~tni~~ 448 (1165)
T 2qf7_A 389 GFGIRLD-GGTS--YSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFRIRG--VATNLTF 448 (1165)
T ss_dssp CTTEEEE-CCSC--CTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHHCEEES--SCCSHHH
T ss_pred CCceEee-eccC--CCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEEEec--ccCCHHH
Confidence 1344544 2221 1354444 356788999999999999999999999999999 8888883
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=349.47 Aligned_cols=408 Identities=15% Similarity=0.179 Sum_probs=279.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC--CCCc-CCCCCcc-cc-----CCCCCCHHHHHHHHHHcCCcEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN--AGIS-NSGDATC-IP-----DLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~--~~~~-~~~~~~~-v~-----~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
.+||||+|.|.....+++++++. |++++.++... .... ..++... +. .-+..|.+.+++++++.++|+|+
T Consensus 4 ~kkVLIagrGeia~riiraa~el-Gi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~ 82 (1150)
T 3hbl_A 4 IKKLLVANRGEIAIRIFRAAAEL-DISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIH 82 (1150)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHT-TCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence 57899999997667788888876 99999886432 1111 1111111 10 01335689999999999999999
Q ss_pred EC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEE
Q 010065 153 VG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 153 ~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~V 226 (519)
|+ +|+. .+++.++++|++++|++++++.++.||..+|++++++|||+|++. .+.+.+++.++++++|||+|
T Consensus 83 pg~gflsE~~---~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~iGyPvV 159 (1150)
T 3hbl_A 83 PGYGFLSENE---QFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLM 159 (1150)
T ss_dssp CTTTTSTTCH---HHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTCSSEE
T ss_pred ECCCcccccH---HHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHcCCCEE
Confidence 96 4554 457779999999999999999999999999999999999999998 78888888888889999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhc--cCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEecccccccccc
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLKN--AFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVG 302 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~--~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~ 302 (519)
+||..|+||+|++++++.+|+.++++.+.... .| .+..++||+||+| +|+++.++.|+. .++.+...... ..
T Consensus 160 VKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~f--g~~~vlVEeyI~G~reieV~vl~d~~G~vv~l~er~~s--~q 235 (1150)
T 3hbl_A 160 IKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSF--GNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCS--VQ 235 (1150)
T ss_dssp EECCC-------CEECCSSSCTHHHHSSSSSCC--------CBEEECCCSSCEEEEEEEEECSSSCEEEEEEEEEE--EE
T ss_pred EEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhc--CCCcEEEEEccCCCcEEEEEEEEeCCCCEEEEEeeccc--ee
Confidence 99999999999999999999999998765321 12 1478999999999 899999998753 44433221100 00
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
... .......|++.++++..+++.+.+ .++++++|+. |++++||++++++ +||||||||+++... .
T Consensus 236 r~~-----~k~~e~~Pa~~l~~~~~~~l~~~a----~~~~~alG~~--G~~~vEflvd~d~--~y~iEINpR~~g~~~-v 301 (1150)
T 3hbl_A 236 RRH-----QKVVEVAPSVGLSPTLRQRICDAA----IQLMENIKYV--NAGTVEFLVSGDE--FFFIEVNPRVQVEHT-I 301 (1150)
T ss_dssp SSS-----CEEEEESSCSSCCHHHHHHHHHHH----HHHHHHTTCC--EEEEEEEEEETTE--EEEEEEECSCCTTHH-H
T ss_pred ccC-----ceeEEecCCCCCCHHHHHHHHHHH----HHHHHHcCCC--ceEEEEEEEECCe--EEEEEEeCCCCCCcc-e
Confidence 000 112346788668999888888876 4677888876 9999999999875 999999999987654 3
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCC-------C-cccCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEE
Q 010065 383 LMVRLESDLAEVLLAACRGELTGV-------T-LNWSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFH 452 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~~~~~-------~-~~~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ 452 (519)
....+|+|+.++++++++|...+. . .....++++...+....-... +..| .+..+... ..+++++-.
T Consensus 302 te~~tGvDlv~~~i~ia~G~~L~~~~~~~~~q~~i~~~G~ai~~Ri~aedp~~~f~P~~G-~i~~~~~p--~~~gvr~d~ 378 (1150)
T 3hbl_A 302 TEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTG-TIIAYRSS--GGFGVRLDA 378 (1150)
T ss_dssp HHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEECSEEGGGTSEECCC-CCCEEECC--CCTTEEEEE
T ss_pred eehhcCCCHHHHHHHHHCCCCCCccccccccccccccceEEEEEEEeccCCccccCCCCc-eEEEEEcC--CCCceeccc
Confidence 445679999999999999984332 1 112246777665554320000 0011 12221110 012333331
Q ss_pred eeeeecCCCcEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccccc
Q 010065 453 AGTALDADGNFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 453 ~~~~~~~~g~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~~~ 517 (519)
... ..|...+ .+..++.|+++|.|+++|++++.++++.++++|. |.|+-+.++.|...++.|
T Consensus 379 ~~~---~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~~~~~~f~~~~~~t 447 (1150)
T 3hbl_A 379 GDG---FQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTT 447 (1150)
T ss_dssp SSC---SSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHHHCEEESSCCSHHHHHHHHHCHHHHHSCCCT
T ss_pred ccc---ccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHhceEEeCccCCHHHHHHHhCCHHHcCCCccc
Confidence 100 1222222 3456899999999999999999999999999992 445545555555544443
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=333.93 Aligned_cols=369 Identities=19% Similarity=0.178 Sum_probs=265.4
Q ss_pred HHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCC--hhhH--HHHHH--HHH
Q 010065 96 ALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPE--APLV--SGLAN--KLV 168 (519)
Q Consensus 96 ~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E--~~~~--~~~a~--~le 168 (519)
.+++++++. |+++++++++...... ...++.. ++.+.+.+.+.++++++++|+|+|+.+ .++. ..+++ .|+
T Consensus 32 ~~~~al~~~-G~~vv~v~~~~~~~~~~~~~ad~~-~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le 109 (1073)
T 1a9x_A 32 QACKALREE-GYRVINVNSNPATIMTDPEMADAT-YIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLE 109 (1073)
T ss_dssp HHHHHHHHH-TCEEEEECSCTTCGGGCGGGSSEE-ECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHc-CCEEEEEeCCcccccCChhhCcEE-EECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHH
Confidence 478888876 9999998754322111 1112222 345568899999999999999999644 2221 11232 688
Q ss_pred HCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHH
Q 010065 169 KAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAY 248 (519)
Q Consensus 169 ~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~ 248 (519)
.+|++++|++++++..++||..++++|+++|+|+|++..+++.+++.++++++|||+||||..++||.|+.+++|.+|+.
T Consensus 110 ~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~ 189 (1073)
T 1a9x_A 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFE 189 (1073)
T ss_dssp HHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHH
T ss_pred HcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHH
Q 010065 249 EAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKEL 326 (519)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~ 326 (519)
++++.++.. .....++||+||+| +|+++++++|+ ++++.++.... ++ ..+++.|.+..+.|++.++++.
T Consensus 190 ~~~~~~~~~----~~~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~~~~e~----~d-p~~v~~g~s~~~~Pa~~l~~~~ 260 (1073)
T 1a9x_A 190 EICARGLDL----SPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIEN----FD-AMGIHTGDSITVAPAQTLTDKE 260 (1073)
T ss_dssp HHHHHHHHH----CTTSCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEE----SS-CTTSCGGGSCEEESCCSCCHHH
T ss_pred HHHHHHHhh----CCCCcEEEEEccCCCeEEEEEEEEeCCCCEEEEEEEec----cc-CCccccCcEEEEecCCCCCHHH
Confidence 999887653 23468999999999 79999999964 34444433322 22 1345666677788997699998
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCCC
Q 010065 327 QSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGV 406 (519)
Q Consensus 327 ~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~~ 406 (519)
.+++++.+. ++++++|+. +|.+++||+++++++++||||||||++++.. .....+|+|+.+..+++++|...+.
T Consensus 261 ~~~l~~~a~----~i~~~lg~~-~G~~~vdf~~~~~~g~~~viEiNpR~~~ss~-l~~~atG~~l~~~~~~~a~G~~l~~ 334 (1073)
T 1a9x_A 261 YQIMRNASM----AVLREIGVE-TGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA-LASKATGFPIAKVAAKLAVGYTLDE 334 (1073)
T ss_dssp HHHHHHHHH----HHHHHHTCC-SEEEEEEEEECTTTCCEEEEEEESSCCHHHH-HHHHHHSCCHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHH----HHHHHcCcc-cCceEEEEEEECCCCCEEEEEecCCCCccHH-HHHHHhCCCHHHHHHHHHcCCChHH
Confidence 888888774 677888876 3999999999974237999999999987532 2334579999999999999973222
Q ss_pred CcccCCCcEEEEEEecCCC-CCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHH
Q 010065 407 TLNWSPGSAMVVVMASKGY-PGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQD 485 (519)
Q Consensus 407 ~~~~~~~~a~~~~l~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~ 485 (519)
....-.+.+ .+..| |... ..+..++ ... ...-+....++.+..+++|+|++.|+|.+||.+
T Consensus 335 ~~~~i~~~~-----~~a~f~p~~~---~v~~~ip-------~~~---~~~~~~~~~~~~~~~~~~G~v~~~g~~~~ea~~ 396 (1073)
T 1a9x_A 335 LMNDITGGR-----TPASFEPSID---YVVTKIP-------RFN---FEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQ 396 (1073)
T ss_dssp SBCTTTTTC-----SBSCSCCBCS---SEEEEEE-------ECC---GGGCTTSCCBCCSSCCCCEEEEEEESSHHHHHH
T ss_pred hhccccCcc-----CHHHcccCCC---cEEEEcc-------ccc---ccccCCCCcccCCCccCcEEEEEEcCCHHHHHH
Confidence 111100100 00001 1100 0000000 000 000000122344566779999999999999999
Q ss_pred HHHHHhhccccCCee
Q 010065 486 RAYLAVEEINWPGGF 500 (519)
Q Consensus 486 ~a~~~~~~i~~~g~~ 500 (519)
++.++++ +.+.|..
T Consensus 397 ka~~~l~-~~~~g~~ 410 (1073)
T 1a9x_A 397 KALRGLE-VGATGFD 410 (1073)
T ss_dssp HHHHHSS-SSCSSSC
T ss_pred HHHHhhc-ccccCcC
Confidence 9999998 7788864
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=330.27 Aligned_cols=374 Identities=19% Similarity=0.213 Sum_probs=263.6
Q ss_pred CccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcC--CCCCccccCCCCCCHHHHHHHHHHcC
Q 010065 81 QRVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISN--SGDATCIPDLDVLDGDAVISFCRKWS 147 (519)
Q Consensus 81 ~~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~--~~~~~~v~~~d~~d~~~l~~~~~~~~ 147 (519)
.+++|+|+|+|.. ...+++++++. |++++.++.+ +.... ....+.+ ++++.+.+.+.++++.++
T Consensus 558 ~~~kVlVlG~G~~riG~~~Efd~~~~~~~~al~~~-G~~vi~v~~n-p~~~s~~~~~ad~~-~~~p~~~e~v~~i~~~e~ 634 (1073)
T 1a9x_A 558 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRED-GYETIMVNCN-PETVSTDYDTSDRL-YFEPVTLEDVLEIVRIEK 634 (1073)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT-TCEEEEECCC-TTSSTTSTTSSSEE-ECCCCSHHHHHHHHHHHC
T ss_pred cCcEEEEecCCccccccccccchhHHHHHHHHHhc-CCEEEEEecC-CcccccccccccEE-EeccchhhhhhhhhhhcC
Confidence 4578888888753 12358888876 9999988643 22211 1122333 456778999999999999
Q ss_pred CcEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEE
Q 010065 148 VGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 148 id~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~Vv 227 (519)
+|+|++..+......+++.|+..|+|++|++++++.+++||..++++|+++|||+|++..+.+.+++.++++++|||+||
T Consensus 635 ~d~Vi~~~g~~~~~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~~~s~eea~~~~~~ig~PvvV 714 (1073)
T 1a9x_A 635 PKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVV 714 (1073)
T ss_dssp CSEEECSSSTHHHHTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHHCSSEEE
T ss_pred cceEEeecCCchHHHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceEECCHHHHHHHHHHcCCCEEE
Confidence 99999954432223567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCc-EEEEEEEEeCCeeEEeccccccccccCCCC
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGE-EASFFALVDGENAIPLESAQDHKRVGDGDT 306 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~-E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~ 306 (519)
||..++||+|+.++++.+|+.++++.+... ..+..++||+||+|. |++|++++|++.++...... +.. ..
T Consensus 715 KP~~~~gG~Gv~iv~~~~el~~~~~~a~~~----~~~~~vlvEefI~g~~E~~V~~l~d~~~v~~~~i~e-~~~----~~ 785 (1073)
T 1a9x_A 715 RASYVLGGRAMEIVYDEADLRRYFQTAVSV----SNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME-HIE----QA 785 (1073)
T ss_dssp EC-------CEEEECSHHHHHHHHHHCC------------EEEBCCTTCEEEEEEEEECSSCEEEEEEEE-ESS----CT
T ss_pred EECCCCCCCCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEccCCCcEEEEEEEEECCeEEEEeeEE-EEe----cc
Confidence 999999999999999999999999886531 134689999999996 99999999876544333222 211 34
Q ss_pred CCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH
Q 010065 307 GPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR 386 (519)
Q Consensus 307 ~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~ 386 (519)
+++.|++....|+..++++..+++++.+ .+++.++|+. |++++||+++++ ++||||+|||++++.. .+...
T Consensus 786 g~~~gd~~~~~P~~~l~~~~~~~i~~~a----~~i~~aLg~~--G~~~vdf~v~~~--~~~viEvNpR~~~~~~-~~~~~ 856 (1073)
T 1a9x_A 786 GVHSGDSACSLPAYTLSQEIQDVMRQQV----QKLAFELQVR--GLMNVQFAVKNN--EVYLIEVNPRAARTVP-FVSKA 856 (1073)
T ss_dssp TSCGGGCCEEESCSSCCHHHHHHHHHHH----HHHHHHTTCC--EEEEEEEEECSS--CEEEEEEECSCCTTHH-HHHHH
T ss_pred CCccCCceEEecCCCCCHHHHHHHHHHH----HHHHHHcCCc--ceEEEEEEEECC--eEEEEEEECCCccHHH-HHHHH
Confidence 6777888888898559999888888876 4677888877 999999999754 4999999999988644 44456
Q ss_pred hCCCHHHHHHHHHhCCCCCCCccc-----CCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCC
Q 010065 387 LESDLAEVLLAACRGELTGVTLNW-----SPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADG 461 (519)
Q Consensus 387 ~G~d~~~~~i~~~~g~~~~~~~~~-----~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (519)
+|+|+.++++++++|.... ++.+ ..++++...+.+ .........
T Consensus 857 tGi~l~~~~~~~~~G~~l~-~~~~~~~~~~~~~~vk~~~~~------------------------------f~~~~~~d~ 905 (1073)
T 1a9x_A 857 TGVPLAKVAARVMAGKSLA-EQGVTKEVIPPYYSVKEVVLP------------------------------FNKFPGVDP 905 (1073)
T ss_dssp HSCCHHHHHHHHHTTCCHH-HHTCCSCCCCSSEEEEEEECG------------------------------GGGCTTSCC
T ss_pred HCcCHHHHHHHHHcCCCch-hcccCcCcCCCeEEEEeccCC------------------------------cccCCCCcC
Confidence 7999999999999998321 1111 112222221111 000000000
Q ss_pred cEEecCCeEEEEEEecCCHHHHHHHHHHHhhcccc--CC-eeec-ccccc
Q 010065 462 NFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINW--PG-GFYR-RDIGW 507 (519)
Q Consensus 462 ~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~--~g-~~~r-~dig~ 507 (519)
.+.....+.|.|++.|.|.++|..++..+... .+ .| .++. .|.+-
T Consensus 906 ~lg~~~~stGev~g~~~~~~~a~~ka~~~~~~-~~p~~g~vlisv~d~~K 954 (1073)
T 1a9x_A 906 LLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNS-TMKKHGRALLSVREGDK 954 (1073)
T ss_dssp CCCSSCCCCEEEEEEESSHHHHHHHHHHHTTC-CCCSSSEEEEECCGGGG
T ss_pred CCCCcccccCceEEecCCHHHHHHhhHHhccC-CCCCcceEEEEecCcCH
Confidence 01112355679999999999999999998753 33 45 3333 55543
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=285.07 Aligned_cols=297 Identities=19% Similarity=0.180 Sum_probs=193.8
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCC-CcEEEEecCCCCCc-CCCCCc-cccCC-CCCCHHHHHHHHHHcCCcEEEECCC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHS-CDAVFCAPGNAGIS-NSGDAT-CIPDL-DVLDGDAVISFCRKWSVGLVVVGPE 156 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g-~~~v~~~~~~~~~~-~~~~~~-~v~~~-d~~d~~~l~~~~~~~~id~Vi~g~E 156 (519)
.+++|||+|+|.+ ++++++++++.| ++++.++.+..... ...+.. .++.. |....+.++++++++++|+|++..|
T Consensus 3 ~~~~Ili~g~g~~-~~l~~~l~~~~~~~~v~~~d~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~d~vi~~~~ 81 (331)
T 2pn1_A 3 QKPHLLITSAGRR-AKLVEYFVKEFKTGRVSTADCSPLASALYMADQHYIVPKIDEVEYIDHLLTLCQDEGVTALLTLID 81 (331)
T ss_dssp TCCEEEEESCTTC-HHHHHHHHHHCCSSEEEEEESCTTCGGGGGSSSEEECCCTTSTTHHHHHHHHHHHHTCCEEEESSH
T ss_pred ccceEEEecCCch-HHHHHHHHHhcCCCEEEEEeCCCcchhHHhhhceecCCCCCChhHHHHHHHHHHHcCCCEEEeCCc
Confidence 3579999999976 578999988766 77777764422111 111111 11112 2223789999999999999999755
Q ss_pred h--hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHH--HHhCCCEEEEeCCC
Q 010065 157 A--PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYI--QEEGAPIVVKADGL 232 (519)
Q Consensus 157 ~--~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~--~~~g~P~VvKP~~g 232 (519)
. ..+..+++.|+..|+|++|++++++.+++||..++++|+++|||+|++.. +.+++.+++ ++++||+|+||..+
T Consensus 82 ~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~~P~vvKp~~g 159 (331)
T 2pn1_A 82 PELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYA--TMASFEEALAAGEVQLPVFVKPRNG 159 (331)
T ss_dssp HHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEES--SHHHHHHHHHTTSSCSCEEEEESBC
T ss_pred hhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEe--cHHHhhhhhhcccCCCCEEEEeCCC
Confidence 3 33455677788889999999999999999999999999999999999865 456666665 46899999999999
Q ss_pred CCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEe---CCeeEEeccccccccccCCCCCCC
Q 010065 233 AAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVD---GENAIPLESAQDHKRVGDGDTGPN 309 (519)
Q Consensus 233 ~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~d---g~~~~~~~~~~~~~~~~~~~~~~~ 309 (519)
+||.||+++++.+|+.++++. ...++|||||+|+|+++.++.| |+.+......+.+. .
T Consensus 160 ~g~~gv~~v~~~~el~~~~~~----------~~~~lvee~i~G~e~~v~~~~d~~~G~~~~~~~~~~~~~---------~ 220 (331)
T 2pn1_A 160 SASIEVRRVETVEEVEQLFSK----------NTDLIVQELLVGQELGVDAYVDLISGKVTSIFIKEKLTM---------R 220 (331)
T ss_dssp ---------------------------------CEEEEECCCSEEEEEEEEECTTTCCEEEEEEEEEEEE---------E
T ss_pred CCCCCeEEeCCHHHHHHHHHh----------CCCeEEEecCCCcEEEEEEEEecCCCeEEEEEEEEEEEe---------c
Confidence 999999999999999887653 2589999999999999999986 44332222111110 0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCC
Q 010065 310 TGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLES 389 (519)
Q Consensus 310 ~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~ 389 (519)
.|......| . ..++ +.+.+ .+++.++|+. |++++||+.+++ ++|++|||||+|++.. +...+|+
T Consensus 221 ~g~~~~~~~-~-~~~~----~~~~~----~~~~~~lg~~--G~~~vd~~~~~g--~~~~iEiN~R~~g~~~--~~~~~G~ 284 (331)
T 2pn1_A 221 AGETDKSRS-V-LRDD----VFELV----EHVLDGSGLV--GPLDFDLFDVAG--TLYLSEINPRFGGGYP--HAYECGV 284 (331)
T ss_dssp TTEEEEEEE-E-CCHH----HHHHH----HHHHTTTCCC--EEEEEEEEEETT--EEEEEEEESSCCTTHH--HHHHTTC
T ss_pred CCceeEeEE-e-ccHH----HHHHH----HHHHHHhCCc--ceEEEEEEEcCC--CEEEEEEeCCCCCchH--HHHHcCC
Confidence 111111122 2 3443 33333 3455778875 999999996544 5999999999987654 3455799
Q ss_pred CHHHHHHHHHhCCCCCC-CcccCCCcE
Q 010065 390 DLAEVLLAACRGELTGV-TLNWSPGSA 415 (519)
Q Consensus 390 d~~~~~i~~~~g~~~~~-~~~~~~~~a 415 (519)
|+.++++++++|....+ ...+.++..
T Consensus 285 ~~~~~~~~~~~g~~~~~~~~~~~~~~~ 311 (331)
T 2pn1_A 285 NFPAQLYRNLMHEINVPQIGQYLDDIY 311 (331)
T ss_dssp CHHHHHHHHHTTCCCCCCTTCSCSSCE
T ss_pred CHHHHHHHHHcCCCCCccccccccCcE
Confidence 99999999999986544 234555443
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=285.21 Aligned_cols=250 Identities=20% Similarity=0.260 Sum_probs=203.0
Q ss_pred HHHHHHHHHHcCCcEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHH
Q 010065 136 GDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAK 215 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~ 215 (519)
.+.+++++++.++|+|+|++|..+. .+++.++.+|+| |++++++.+++||..++++|+++|||+|++..+++.+++.
T Consensus 91 i~~I~~~a~~~~id~Vip~sE~~l~-~~a~~~e~~Gi~--g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~ 167 (474)
T 3vmm_A 91 VEQIVKVAEMFGADAITTNNELFIA-PMAKACERLGLR--GAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFR 167 (474)
T ss_dssp HHHHHHHHHHTTCSEEEESCGGGHH-HHHHHHHHTTCC--CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEEECSHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCcccHH-HHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHH
Confidence 5788999999999999998888543 467889999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhcc---C---CCCCCcEEEEeccCCcE------------
Q 010065 216 QYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNA---F---GSAGCRVIIEEFLEGEE------------ 277 (519)
Q Consensus 216 ~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~---~---~~~~~~~lvEe~I~G~E------------ 277 (519)
++++++|||+|+||..++||+|+.++++.+|+.++++.+..... . -..++.+||||||+|.|
T Consensus 168 ~~~~~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e 247 (474)
T 3vmm_A 168 AALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDY 247 (474)
T ss_dssp HHHHHSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSE
T ss_pred HHHHHcCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccccce
Confidence 99999999999999999999999999999999999988764210 0 01357899999999976
Q ss_pred EEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEE-EEE
Q 010065 278 ASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVL-YAG 356 (519)
Q Consensus 278 ~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~-~vd 356 (519)
+++.++..++....+........ ..++......|+. ++++..+++.+.+ .++++++|+. |.. |+|
T Consensus 248 ~sv~~v~~dg~~~~v~i~~~~~~-------~~~~~~~~~~Pa~-l~~~~~~~l~~~a----~~~~~alG~~--g~~~~ve 313 (474)
T 3vmm_A 248 ISIEGIMADGEYFPIAIHDKTPQ-------IGFTETSHITPSI-LDEEAKKKIVEAA----KKANEGLGLQ--NCATHTE 313 (474)
T ss_dssp EEEEEEEETTEEEEEEEEEECCC-------BTTBCCEEEESCC-CCHHHHHHHHHHH----HHHHHHHTCC--SEEEEEE
T ss_pred eEEEEEEECCeEEEEEEEeeccC-------CCccceEEEECCC-CCHHHHHHHHHHH----HHHHHHcCCC--CccEEEE
Confidence 89987763333332322211100 1134457788997 9999888888876 4678899987 666 899
Q ss_pred EEEEcCCCceEEEEEeCCCCCCchHH-HHHHhCCCHHHHHHHHHh-CCC
Q 010065 357 LMIEKKSGLPKLIEYNVRFGDPECQV-LMVRLESDLAEVLLAACR-GEL 403 (519)
Q Consensus 357 f~~~~~g~~~~viEiN~R~G~~~~~~-~~~~~G~d~~~~~i~~~~-g~~ 403 (519)
|+++++| ++|+||+|||++++..+. +...+|+|+.++++++++ |..
T Consensus 314 f~~~~dg-~~~~iEvNpR~~G~~~~~~~~~~tG~dl~~~~i~~a~~G~~ 361 (474)
T 3vmm_A 314 IKLMKNR-EPGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCFGKD 361 (474)
T ss_dssp EEEEGGG-EEEEEEEESSCCSTTHHHHHHHHHCCCHHHHHHHHHHHGGG
T ss_pred EEEcCCC-CEEEEEEeCCCCCCchHHHHHHHHCcCHHHHHHHHHcCCCC
Confidence 9999876 899999999997654433 344569999999999999 974
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=241.50 Aligned_cols=271 Identities=18% Similarity=0.096 Sum_probs=183.9
Q ss_pred EEEEeCCh--hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCc-EEEECCChhhHH
Q 010065 85 VLVIGGGG--REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVG-LVVVGPEAPLVS 161 (519)
Q Consensus 85 vliiG~g~--~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id-~Vi~g~E~~~~~ 161 (519)
|+|++... ....++.++++. |++++.+++.+.... + .+.. ....++| ++++........
T Consensus 2 I~il~~~~~~~~~~~~~a~~~~-G~~v~~~~~~~~~~~-------~--~~~~--------~~~~~~d~~~~~~~~~~~~~ 63 (280)
T 1uc8_A 2 LAILYDRIRPDERMLFERAEAL-GLPYKKVYVPALPMV-------L--GERP--------KELEGVTVALERCVSQSRGL 63 (280)
T ss_dssp EEEEESSCCHHHHHHHHHHHHH-TCCEEEEEGGGCCEE-------T--TBCC--------GGGTTCCEEEECCSSHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHc-CCcEEEEehhhceee-------c--cCCC--------cccCCCCEEEECCccchhhH
Confidence 67787642 335678888777 999998876532211 0 0100 1124689 555542222223
Q ss_pred HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEe
Q 010065 162 GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVA 241 (519)
Q Consensus 162 ~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v 241 (519)
.+++.++.+|+|++ ++++++.+++||..++++|+++|||+|++..+.+.+++.+++++++||+|+||..+++|.||.++
T Consensus 64 ~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~~~~p~vvKp~~g~~~~gv~~v 142 (280)
T 1uc8_A 64 AAARYLTALGIPVV-NRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXX 142 (280)
T ss_dssp HHHHHHHHTTCCEE-SCHHHHHHHHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHH
T ss_pred HHHHHHHHCCCcee-CCHHHHHHhCCHHHHHHHHHHcCcCCCCeEeeCCHHHHHHHHHHhCCCEEEEECCCCCcccceec
Confidence 56677899999998 56999999999999999999999999999999999999888899999999999999999999999
Q ss_pred CCHHHHHHHHHHH--HhhccCCCCCCcEEEEeccCC--cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEe
Q 010065 242 MTLEEAYEAVDSM--LLKNAFGSAGCRVIIEEFLEG--EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYS 317 (519)
Q Consensus 242 ~~~~el~~a~~~~--~~~~~~~~~~~~~lvEe~I~G--~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (519)
++.+|+.++++.+ +.. ..+..++||+||+| .|+++.++ +|+ .+... .+.. .++...++.++ ...
T Consensus 143 ~~~~el~~~~~~~~~~~~----~~~~~~lvqe~i~~~~~e~~v~v~-~~~-~~~~~-~~~~---~~~~~~~~~g~--~~~ 210 (280)
T 1uc8_A 143 XXXXXXXXXXXXKEVLGG----FQHQLFYIQEYVEKPGRDIRVFVV-GER-AIAAI-YRRS---AHWITNTARGG--QAE 210 (280)
T ss_dssp HHHHC------------C----TTTTCEEEEECCCCSSCCEEEEEE-TTE-EEEEE-EC-------------------CE
T ss_pred ccccccchhhhhHhhhcc----cCCCcEEEEeccCCCCceEEEEEE-CCE-EEEEE-EEec---CCccccccCCc--ccc
Confidence 9999999888765 210 12578999999996 56666554 444 33221 1111 11222233333 235
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHH
Q 010065 318 PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLA 397 (519)
Q Consensus 318 P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~ 397 (519)
|.. ++++ +.+.+ .++++++|+ |++++||+++++| +|++|+|+|||++. +...+|+|+.+++++
T Consensus 211 p~~-l~~~----~~~~~----~~~~~~lg~---g~~~vD~~~~~~g--~~~iEiN~r~g~~~---~~~~~G~~~~~~~~~ 273 (280)
T 1uc8_A 211 NCP-LTEE----VARLS----VKAAEAVGG---GVVAVDLFESERG--LLVNEVNHTMEFKN---SVHTTGVDIPGEILK 273 (280)
T ss_dssp ECC-CCHH----HHHHH----HHHHHHTTC---SEEEEEEEEETTE--EEEEEEETTCCCTT---HHHHHCCCHHHHHHH
T ss_pred CCC-CCHH----HHHHH----HHHHHHhCC---CeEEEEEEEeCCC--eEEEEEeCCCCccc---hheeeccCHHHHHHH
Confidence 776 6764 33333 345577875 8899999999886 99999999998864 344579999999999
Q ss_pred HHhCCC
Q 010065 398 ACRGEL 403 (519)
Q Consensus 398 ~~~g~~ 403 (519)
++.|..
T Consensus 274 ~~~~~~ 279 (280)
T 1uc8_A 274 YAWSLA 279 (280)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 998763
|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=243.96 Aligned_cols=266 Identities=15% Similarity=0.128 Sum_probs=175.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC----cCCCCCccccCCC-CCCHHHHHHHHHHcCCcEEEECCC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI----SNSGDATCIPDLD-VLDGDAVISFCRKWSVGLVVVGPE 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~----~~~~~~~~v~~~d-~~d~~~l~~~~~~~~id~Vi~g~E 156 (519)
+++|+|+|+| ....+++++++. |++++++++++... ....+ ..+ ..+ ..+ +.+ ++ .+|+|++..|
T Consensus 2 ~m~Ililg~g-~~~~l~~a~~~~-G~~v~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~d-~~l---~~--~~d~i~~~~e 71 (334)
T 2r85_A 2 KVRIATYASH-SALQILKGAKDE-GFETIAFGSSKVKPLYTKYFPVA-DYF-IEEKYPE-EEL---LN--LNAVVVPTGS 71 (334)
T ss_dssp CSEEEEESST-THHHHHHHHHHT-TCCEEEESCGGGHHHHHTTSCCC-SEE-ECSSCCH-HHH---HH--TTEEECCCTT
T ss_pred ceEEEEECCh-hHHHHHHHHHhC-CCEEEEEECCCCCcccccccccC-ceE-ecCCcCh-HHh---cc--cCCEEEECcc
Confidence 4678888887 445678888776 99999887653211 11111 111 223 222 222 22 3588888777
Q ss_pred hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 010065 157 APLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGK 236 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~ 236 (519)
..... ..+.++.+|+|++ ++++++.+++||..++++|+++|||+|++ +.+.++ ++||+|+||..++||+
T Consensus 72 ~~~~~-~~~~le~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~-------l~~P~vvKP~~g~~s~ 140 (334)
T 2r85_A 72 FVAHL-GIELVENMKVPYF-GNKRVLRWESDRNLERKWLKKAGIRVPEV--YEDPDD-------IEKPVIVKPHGAKGGK 140 (334)
T ss_dssp HHHHH-CHHHHHTCCSCBB-SCTTHHHHHHSHHHHHHHHHHTTCCCCCB--CSCGGG-------CCSCEEEEECC----T
T ss_pred hhhhh-HHHHHHHcCCCcc-CCHHHHHHHHhHHHHHHHHHHcCCCCCCc--cCChHH-------cCCCEEEEeCCCCCCC
Confidence 54332 2345688999987 56799999999999999999999999998 566543 5799999999999999
Q ss_pred cEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEe------------CCeeEEecccc--cccccc
Q 010065 237 GVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVD------------GENAIPLESAQ--DHKRVG 302 (519)
Q Consensus 237 GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~d------------g~~~~~~~~~~--~~~~~~ 302 (519)
||.++++.+|+.++++.++....+ +....+||||||+|.|+++.++.+ |+......... .....+
T Consensus 141 Gv~~v~~~~el~~~~~~~~~~~~~-~~~~~~lvee~i~G~e~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~ 219 (334)
T 2r85_A 141 GYFLAKDPEDFWRKAEKFLGIKRK-EDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQL 219 (334)
T ss_dssp TCEEESSHHHHHHHHHHHHCCCSG-GGCCSEEEEECCCCEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHT
T ss_pred CEEEECCHHHHHHHHHHHHhhccc-CCCCcEEEEeccCCceeEEEEeecCcCceeeeeeeccEEEeccCccccccccccc
Confidence 999999999999999887632111 012689999999999998554432 22111100000 000111
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-----CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCC
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE-----GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGD 377 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-----g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~ 377 (519)
+.+.++.....+++ |+. ++++..+++.+.+. ++++++ ++. |++|+||+++++| ++|++|||||||+
T Consensus 220 ~~~~~~~~~~~g~~-p~~-l~~~~~~~i~~~a~----~~~~~l~~~~~~~~--G~~~vd~~~~~~g-~~~viEiN~R~g~ 290 (334)
T 2r85_A 220 EFDMDITYTVIGNI-PIV-LRESLLMDVIEAGE----RVVKAAEELMGGLW--GPFCLEGVFTPDL-EFVVFEISARIVA 290 (334)
T ss_dssp TSCCCCCEEEEEEE-ECC-CCGGGHHHHHHHHH----HHHHHHHHHSSCCC--EEEEEEEEECTTS-CEEEEEEECSCCG
T ss_pred ccccCCceeeeCCC-Ccc-cCHHHHHHHHHHHH----HHHHHHHhhccccc--ccEEEEEEECCCC-CEEEEEEeCCcCC
Confidence 11111222223333 887 88877778777664 566777 544 9999999999876 7999999999988
Q ss_pred C
Q 010065 378 P 378 (519)
Q Consensus 378 ~ 378 (519)
+
T Consensus 291 ~ 291 (334)
T 2r85_A 291 G 291 (334)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=239.38 Aligned_cols=276 Identities=17% Similarity=0.221 Sum_probs=181.2
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC--cCCCCCccccCCC-CCCH--HHHHHHHHHcCCcEEEECC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI--SNSGDATCIPDLD-VLDG--DAVISFCRKWSVGLVVVGP 155 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~--~~~~~~~~v~~~d-~~d~--~~l~~~~~~~~id~Vi~g~ 155 (519)
++++|+++|+| ....+++++++. |+++++++++.... .....++.+...| .+|. +++++.+.+.+ |+|. .
T Consensus 17 ~~~~I~ilGs~-l~~~l~~aAk~l-G~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~~-~vV~--p 91 (361)
T 2r7k_A 17 DEITIATLGSH-TSLHILKGAKLE-GFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELN-SIVV--P 91 (361)
T ss_dssp TSCEEEEESST-THHHHHHHHHHT-TCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHTT-EEEC--C
T ss_pred cCCEEEEECcH-HHHHHHHHHHHC-CCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHcC-CEEE--e
Confidence 35789999998 566778888776 99999998763221 0111112221345 3341 45555555554 4444 4
Q ss_pred ChhhHH--HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC
Q 010065 156 EAPLVS--GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA 233 (519)
Q Consensus 156 E~~~~~--~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~ 233 (519)
|...+. ++.+..+..|+|++| +..++.+..||..+|++|+++|||+|++ +.+.+++ ++|+||||..++
T Consensus 92 e~~~v~~~gl~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~l~~~GIptp~~--~~~~~e~-------~~PvVVK~~~~a 161 (361)
T 2r7k_A 92 HGSFIAYCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVPKK--YESPEDI-------DGTVIVKFPGAR 161 (361)
T ss_dssp BHHHHHHHCHHHHHHTCCSCBBS-CGGGGGTTTCHHHHHHHHHHTTCCCCCE--ESSGGGC-------CSCEEEECSCCC
T ss_pred CchhhhHHHHHHHHHHcCCCcCC-CHHHHHHhhhHHHHHHHHHHcCcCCCCE--eCCHHHc-------CCCEEEeeCCCC
Confidence 444433 444444589999986 8888899999999999999999999986 5565543 699999999999
Q ss_pred CCCcEEEeCCHHHHHHHHHHHHhhccCCCC-CCcEEEEeccCCcEEEEEEEEe--CCeeEEecccccc------------
Q 010065 234 AGKGVIVAMTLEEAYEAVDSMLLKNAFGSA-GCRVIIEEFLEGEEASFFALVD--GENAIPLESAQDH------------ 298 (519)
Q Consensus 234 gs~GV~~v~~~~el~~a~~~~~~~~~~~~~-~~~~lvEe~I~G~E~sv~~l~d--g~~~~~~~~~~~~------------ 298 (519)
+|+||++++|.+|+.++++.++....++.. ...++|||||+|.|+++..+.. ++.+..+....+.
T Consensus 162 ~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~G~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~ 241 (361)
T 2r7k_A 162 GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPA 241 (361)
T ss_dssp C---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCSEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCH
T ss_pred CCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccceEEeeEEEEecccCCeeEEEEecceEEeecccceecch
Confidence 999999999999999999887643222111 1479999999999998555432 2211111111110
Q ss_pred ccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCeeeEEEEEEEEEcCCCceEEEEEeCC
Q 010065 299 KRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEG----CKFVGVLYAGLMIEKKSGLPKLIEYNVR 374 (519)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g----~~~~G~~~vdf~~~~~g~~~~viEiN~R 374 (519)
+..+.....+.....++. |+. ++++..+++.+.+. +++.+++ ..++|++++||+++++| +++++|||||
T Consensus 242 ~~~~~~~~~p~~v~~G~~-Pa~-l~~~~~~~a~~~a~----~v~~al~~~~~~~~~G~~~vE~fvt~dg-~i~V~EIapR 314 (361)
T 2r7k_A 242 KDQLEMNINPSYVITGNI-PVV-IRESLLPQVFEMGD----KLVAKAKELVPPGMIGPFCLQSLCNENL-ELVVFEMSAR 314 (361)
T ss_dssp HHHHTCCCCCCEEEEEEE-ECC-CCGGGHHHHHHHHH----HHHHHHHHHSTTCCCEEEEEEEEECTTS-CEEEEEEESS
T ss_pred hhhhcccCCCceEEecCc-CCc-CCHHHHHHHHHHHH----HHHHHHHhhccCCccceEEEEEEEcCCC-CEEEEEEcCC
Confidence 000011112233334443 988 88888888888775 4445551 12359999999999876 7999999999
Q ss_pred CCCC
Q 010065 375 FGDP 378 (519)
Q Consensus 375 ~G~~ 378 (519)
+||+
T Consensus 315 ~gGg 318 (361)
T 2r7k_A 315 VDGG 318 (361)
T ss_dssp BCGG
T ss_pred CCCC
Confidence 9775
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=235.90 Aligned_cols=208 Identities=20% Similarity=0.244 Sum_probs=162.5
Q ss_pred HHHHHHHHHcCCcEEEE--CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHH
Q 010065 137 DAVISFCRKWSVGLVVV--GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAA 214 (519)
Q Consensus 137 ~~l~~~~~~~~id~Vi~--g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~ 214 (519)
+.+.++++ ++|++++ .+|++.++++.+.++..| +++|++++++++++||..+++++++ |||+|++..
T Consensus 61 ~~l~~~~~--~~D~~~~i~~~ed~~l~~~~~~l~~~g-~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~------- 129 (305)
T 3df7_A 61 DSMEKYLE--KSDAFLIIAPEDDFLLYTLTKKAEKYC-ENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSL------- 129 (305)
T ss_dssp GGHHHHHT--TCSEEEEECCCGGGHHHHHHHHHHTTS-EESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEES-------
T ss_pred HHHHHHHH--hcCEEEEEccCCcHHHHHHHHHHHhcC-CccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEec-------
Confidence 44555554 5666665 578998888888888878 7889999999999999999999999 999999875
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEecc
Q 010065 215 KQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLES 294 (519)
Q Consensus 215 ~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~ 294 (519)
++++||+|+||.+|+||.||+++++ .+..+|+|+||+|+|+++.++.+ +.+.++..
T Consensus 130 ----~~~~~P~vvKP~~g~gs~Gv~~v~~-------------------~~~~~lvEe~I~G~e~sv~v~~g-~~~~~~~~ 185 (305)
T 3df7_A 130 ----RPLDCKFIIKPRTACAGEGIGFSDE-------------------VPDGHIAQEFIEGINLSVSLAVG-EDVKCLSV 185 (305)
T ss_dssp ----SCCSSSEEEEESSCC----CBCCSS-------------------CCTTEEEEECCCSEEEEEEEEES-SSEEEEEE
T ss_pred ----ccCCCCEEEEeCCCCCCCCEEEEec-------------------CCCCEEEEeccCCcEEEEEEEeC-CeEEEEEE
Confidence 2578999999999999999999988 13689999999999999999974 44554443
Q ss_pred ccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCceEEEEEeC
Q 010065 295 AQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLPKLIEYNV 373 (519)
Q Consensus 295 ~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~~viEiN~ 373 (519)
.......+. ..+...|+. ++++..+++++.+ .+++.++ |+. |++++||+++ + ++|++||||
T Consensus 186 ~~~~~~~~~--------~~g~~~p~~-l~~~~~~~i~~~a----~~~~~~l~g~~--G~~~vD~~~~-~--~~~viEiNp 247 (305)
T 3df7_A 186 NEQIINNFR--------YAGAVVPAR-ISDEVKREVVEEA----VRAVECVEGLN--GYVGVDIVYS-D--QPYVIEINA 247 (305)
T ss_dssp EEEEEETTE--------EEEEEESCC-CCHHHHHHHHHHH----HHHHTTSTTCC--EEEEEEEEES-S--SEEEEEEES
T ss_pred eeEeccCce--------eccccccCC-CCHHHHHHHHHHH----HHHHHHcCCCc--CceEEEEEEC-C--CEEEEEEcC
Confidence 332221111 124577888 8988888888876 4677888 877 9999999996 4 499999999
Q ss_pred CCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 374 RFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 374 R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
|||++.. .+...+|+|+.++++++
T Consensus 248 R~~~~~~-~~~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 248 RLTTPVV-AFSRAYGASVADLLAGG 271 (305)
T ss_dssp SCCGGGG-GHHHHHSCCHHHHHTTC
T ss_pred CCCCCHH-HHHHHHCCCHHHHHHhc
Confidence 9998765 55666799999999987
|
| >1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-25 Score=218.29 Aligned_cols=297 Identities=10% Similarity=0.092 Sum_probs=193.1
Q ss_pred eeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCC---CCCcccc-CC
Q 010065 56 FFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNS---GDATCIP-DL 131 (519)
Q Consensus 56 ~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~---~~~~~v~-~~ 131 (519)
|||+|++||.|.| ++|..|+.. ++.++++. |++++.+++++...... .....+. .-
T Consensus 2 m~i~il~~~~~~~-~~~~~s~~~------------------l~~a~~~~-G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 61 (316)
T 1gsa_A 2 IKLGIVMDPIANI-NIKKDSSFA------------------MLLEAQRR-GYELHYMEMGDLYLINGEARAHTRTLNVKQ 61 (316)
T ss_dssp CEEEEECSCGGGC-CTTTCHHHH------------------HHHHHHHT-TCEEEEECGGGEEEETTEEEEEEEEEEECS
T ss_pred ceEEEEeCcHHhC-CcCCChHHH------------------HHHHHHHC-CCEEEEEchhHeEEECCeEEEEEeeeEecc
Confidence 6999999999876 688776533 67888776 99999887653211100 0000000 00
Q ss_pred CCCC-HH-HHHHHHHHcCCcEEEECCCh-----h-hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCC
Q 010065 132 DVLD-GD-AVISFCRKWSVGLVVVGPEA-----P-LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTA 203 (519)
Q Consensus 132 d~~d-~~-~l~~~~~~~~id~Vi~g~E~-----~-~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p 203 (519)
+... .+ .........++|+|++..+. . ....+.+.++..|+|++ ++++++.+++||..++++++ |+|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P 136 (316)
T 1gsa_A 62 NYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTP 136 (316)
T ss_dssp CSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSC
T ss_pred CcccceeccCccccccccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCC
Confidence 0000 00 00000011368999984221 1 22356677778999987 78999999999999999988 999
Q ss_pred CeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeC-CHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEE
Q 010065 204 KYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM-TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFF 281 (519)
Q Consensus 204 ~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~-~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~ 281 (519)
++..+.+.+++.+++++++ |+|+||..|++|+||.+++ +.+++..+++.+.. .....+|+|+||+| +++++.
T Consensus 137 ~t~~~~~~~~~~~~~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-----~~~~~~lvqe~i~~~~~~~~~ 210 (316)
T 1gsa_A 137 ETLVTRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-----HGTRYCMAQNYLPAIKDGDKR 210 (316)
T ss_dssp CEEEESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-----TTTSCEEEEECCGGGGGCEEE
T ss_pred CeEEeCCHHHHHHHHHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-----cCCceEEEecccCCCCCCCEE
Confidence 9999999999988888899 9999999999999999998 88898888776532 12368999999998 356666
Q ss_pred EEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEc
Q 010065 282 ALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEK 361 (519)
Q Consensus 282 ~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~ 361 (519)
++..++.++.+...+.. ...++...++.|+. ..|.+ ++++..+...+ +.+++.++|+. ++++||+
T Consensus 211 v~~~~g~~~~~~~~r~~-~~~~~~~~~~~gg~--~~~~~-~~~~~~~~a~~-----~~~~l~~~g~~---~~~vD~~--- 275 (316)
T 1gsa_A 211 VLVVDGEPVPYCLARIP-QGGETRGNLAAGGR--GEPRP-LTESDWKIARQ-----IGPTLKEKGLI---FVGLDII--- 275 (316)
T ss_dssp EEEETTEECSEEEEEEC-CSSCSCCCGGGTCE--EEEEE-CCHHHHHHHHH-----HHHHHHHTTCC---EEEEEEE---
T ss_pred EEEECCEEeeeEEEEeC-CCCCceeEEccCCc--cccCC-CCHHHHHHHHH-----HHHHHHhCCCc---EEEEEec---
Confidence 56534434321222211 11122333444543 34665 66654432222 23455567764 4569998
Q ss_pred CCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 362 KSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 362 ~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
| +||+|||+|.++.. ..+...+|+|+.+++++++.+.
T Consensus 276 -g--~~~iEvN~r~~~~~-~~~~~~~g~~~~~~~~~~~~~~ 312 (316)
T 1gsa_A 276 -G--DRLTEINVTSPTCI-REIEAEFPVSITGMLMDAIEAR 312 (316)
T ss_dssp -T--TEEEEEECSSCCCH-HHHHHHSSCCHHHHHHHHHHHH
T ss_pred -C--CEEEEEcCCCCcch-HHHHHhhCcCHHHHHHHHHHHH
Confidence 5 58999999842112 2344567999999999988765
|
| >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-24 Score=210.79 Aligned_cols=251 Identities=14% Similarity=0.095 Sum_probs=155.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC----CcCCCCCccccCCC-CCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG----ISNSGDATCIPDLD-VLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~----~~~~~~~~~v~~~d-~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
++|.++|+| ....+++++++. |++++++++.... ....++ ..+ ..| .+| ++ ...|+|++..|.
T Consensus 3 ~~I~~lGsg-l~~~~~~aAk~l-G~~viv~d~~~~~p~~~a~~~ad-~~~-~~~~~~d------l~--~~~dvitpe~e~ 70 (320)
T 2pbz_A 3 LIVSTIASH-SSLQILLGAKKE-GFKTRLYVSPKRRPFYSSLPIVD-DLV-VAEEMTS------IL--NDDGIVVPHGSF 70 (320)
T ss_dssp -CEEEESST-THHHHHHHHHHT-TCCEEEEECTTTHHHHHTCTTCS-EEE-ECSCSCC------TT--CCSSBCCCBTTH
T ss_pred eEEEEEcCH-hHHHHHHHHHHC-CCEEEEEECCCCCccchhhhcCC-eEE-ECCcHHH------HH--hcCCEEEecccc
Confidence 569999999 777888888777 9999999876321 111222 222 345 334 22 234777776674
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCc
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKG 237 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~G 237 (519)
..... .+.+++.|+|++ ++.++.....||...+++|+++|||+|++.. .+++ +++||+||||.+++||+|
T Consensus 71 v~~~~-l~~le~~~~p~~-p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~---~ee~-----~i~~PviVKp~~g~ggkG 140 (320)
T 2pbz_A 71 VAYLG-IEAIEKAKARFF-GNRRFLKWETTFELQDKALEGAGIPRVEVVE---PEDA-----KPDELYFVRIEGPRGGSG 140 (320)
T ss_dssp HHHSC-HHHHHTCCSCCB-SCSSGGGGGSCHHHHHHHHHHHTCCBCCBCC---SCCC-----CSSCCEEEECC-------
T ss_pred hhHHH-HHHHHHcCCCcC-CCHHHHHHHHhHHHHHHHHHHCCcCCCCeeC---HhHc-----CcCCcEEEEECCCCCCCC
Confidence 33222 334678999987 7788899999999999999999999999873 3333 479999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEe---CCeeEEecccccc---ccccCC-CCCCCC
Q 010065 238 VIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVD---GENAIPLESAQDH---KRVGDG-DTGPNT 310 (519)
Q Consensus 238 V~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~d---g~~~~~~~~~~~~---~~~~~~-~~~~~~ 310 (519)
+++++| +|+..+++.+ +.+++|||||+|.+++..++.+ |+ +..+....+. ...+.. ...+..
T Consensus 141 ~~~v~~-eel~~~~~~~---------~~~~IiEEfI~g~~~~~~~f~~~~~g~-~e~~~~~~r~e~~~g~~~~p~~~~~~ 209 (320)
T 2pbz_A 141 HFIVEG-SELEERLSTL---------EEPYRVERFIPGVYLYVHFFYSPILER-LELLGVDERVLIADGNARWPVKPLPY 209 (320)
T ss_dssp -----C-EECSCCCC-------------CCEEEECCCSCEEEEEEEEETTTTE-EEEEEEEEEEETTCSSSSSCCSCCCC
T ss_pred EEEECh-HHHHHHHHhc---------CCCEEEEeeeceEecceeEEeccccCc-eeEEEecceEEEECCeeecccCCCce
Confidence 999999 9986654332 1579999999998887555542 32 2222221111 111110 001111
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc------CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCC
Q 010065 311 GGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE------GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGD 377 (519)
Q Consensus 311 g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~------g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~ 377 (519)
...++. |+. +++++.+++.+.+.+ ++.++ ++. |++++| +++++ ++|++|||||++|
T Consensus 210 ~~~G~~-P~~-~~~~~~~~a~~~a~~----i~~~L~~l~~~g~~--G~~~vE--~~~dg-~~~v~EIapR~~G 271 (320)
T 2pbz_A 210 TIVGNR-AIA-LRESLLPQLYDYGLA----FVRTMRELEPPGVI--GPFALH--FAYDG-SFKAIGIASRIDG 271 (320)
T ss_dssp CEEEEE-ECE-ECGGGHHHHHHHHHH----HHHHHHHHSTTCCC--SEEEEE--EECSS-SCEEEEEESSBCS
T ss_pred eeecCC-CCc-cCHHHHHHHHHHHHH----HHHHHHhhccCCce--eeEEEE--EcCCC-cEEEEEecCCCCC
Confidence 122233 777 777777777776643 44444 654 999999 56665 6999999999855
|
| >3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=221.42 Aligned_cols=246 Identities=17% Similarity=0.160 Sum_probs=178.9
Q ss_pred CHHHHHHHHHHcCCcEEEECCChhhH-HHHHHHHHH--CCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCH
Q 010065 135 DGDAVISFCRKWSVGLVVVGPEAPLV-SGLANKLVK--AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDP 211 (519)
Q Consensus 135 d~~~l~~~~~~~~id~Vi~g~E~~~~-~~~a~~le~--~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~ 211 (519)
+.+.|+++|++.++|+++.+.|..++ .+..+.++. .+++..+++..++.++.||..+|++|+++|||+|++..+.+.
T Consensus 434 st~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~~~~~~ 513 (757)
T 3ln7_A 434 STQALLFDVIQKGIHTEILDENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSL 513 (757)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTTTEEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCEEEESCH
T ss_pred CHHHHHHHHHHhCCCEEEECCCHHHHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCEEEECCH
Confidence 37899999999999999998777653 122222332 355566778899999999999999999999999999999999
Q ss_pred HHHHHHH-HHhCCCEEEEeCCCCCCCcEEEe----CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeC
Q 010065 212 NAAKQYI-QEEGAPIVVKADGLAAGKGVIVA----MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDG 286 (519)
Q Consensus 212 ~~~~~~~-~~~g~P~VvKP~~g~gs~GV~~v----~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg 286 (519)
+++.+++ +.+|||+||||..|++|+||.++ ++.+|+.++++.++. .+..++|||||+|+|++|.++ +|
T Consensus 514 ~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~------~~~~vlVEefI~G~Ei~v~Vl-gg 586 (757)
T 3ln7_A 514 EKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFR------EDKEVMVEDYLVGTEYRFFVL-GD 586 (757)
T ss_dssp HHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHH------HCSSEEEEECCCSEEEEEEEE-TT
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHh------cCCcEEEEEcCCCcEEEEEEE-CC
Confidence 9887666 67899999999999999999999 899999999988764 356899999999999999887 44
Q ss_pred CeeEEecccccc-------------------c--c--------------------------------------ccCCCCC
Q 010065 287 ENAIPLESAQDH-------------------K--R--------------------------------------VGDGDTG 307 (519)
Q Consensus 287 ~~~~~~~~~~~~-------------------~--~--------------------------------------~~~~~~~ 307 (519)
+ +++....... . + .......
T Consensus 587 k-vvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~N 665 (757)
T 3ln7_A 587 E-TLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSN 665 (757)
T ss_dssp E-EEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCC
T ss_pred E-EEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEeecccc
Confidence 3 4433221110 0 0 0011233
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEc-------CCCceEEEEEeCCCCCCch
Q 010065 308 PNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEK-------KSGLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 308 ~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~-------~g~~~~viEiN~R~G~~~~ 380 (519)
.++|+...-+-.. ++++..+...+ +.+++|+.+.| ||++.++ +++.+.|||+|++||...+
T Consensus 666 ls~GG~~~dvtd~-i~p~~~~~a~~--------aa~~lGl~~~G---vDli~~di~~p~~~~~~~~~iiEvN~~P~~~~h 733 (757)
T 3ln7_A 666 ISTGGDSIDMTDE-MHESYKQLAVG--------ITKAMGAAVCG---VDLIIPDLKQPATPNLTSWGVIEANFNPMMMMH 733 (757)
T ss_dssp GGGTCCEEECTTT-SCHHHHHHHHH--------HHHHHTCSEEE---EEEEESCSSSCCCSSTTTCEEEEEESSCCHHHH
T ss_pred cccCccceecccc-CCHHHHHHHHH--------HHHHhCCCEEE---EEEEecCccccccccCCCeEEEEEcCCcchhhh
Confidence 4556554433223 56655444333 44778987655 9999873 2224899999999986433
Q ss_pred HHHHHH--hCCCHHHHHHHHHhCC
Q 010065 381 QVLMVR--LESDLAEVLLAACRGE 402 (519)
Q Consensus 381 ~~~~~~--~G~d~~~~~i~~~~g~ 402 (519)
+.|. .|.|+...+++.+...
T Consensus 734 --~~p~~g~~~~v~~~ii~~lfp~ 755 (757)
T 3ln7_A 734 --IFPYAGKSRRLTQNVIKMLFPE 755 (757)
T ss_dssp --HSCSSSCCCCCHHHHHHHHCTT
T ss_pred --hccccCCCCchHHHHHHHhcCC
Confidence 3332 4899999999887644
|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=191.20 Aligned_cols=206 Identities=12% Similarity=0.099 Sum_probs=140.9
Q ss_pred CCcEEEEC--CChhhHHHHHHHHHH--CCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC
Q 010065 147 SVGLVVVG--PEAPLVSGLANKLVK--AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG 222 (519)
Q Consensus 147 ~id~Vi~g--~E~~~~~~~a~~le~--~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g 222 (519)
++|+|++. ++...+....+.++. .|+|++ ++++++.+++||..++++|+++|||+|++..+.+.+++.++++..+
T Consensus 55 ~~d~v~~~~~~~~~~~~~~l~~~~~~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~~~~~~~~~~~~~ 133 (324)
T 1z2n_X 55 EPNAIITKRTHPVGKMADEMRKYEKDHPKVLFL-ESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQ 133 (324)
T ss_dssp CCSEEEECCSCSSSHHHHHHHHHHHHCTTSEEE-TCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTTC
T ss_pred CceEEEEeccchHHHHHHHHHHHHHhCCCCeEe-CCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHHcC
Confidence 68989983 454433344344444 789975 8999999999999999999999999999999999998888877754
Q ss_pred --CCEEEEeCCCCCC---CcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC--cEEEEEEEEeCCeeEEeccc
Q 010065 223 --APIVVKADGLAAG---KGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG--EEASFFALVDGENAIPLESA 295 (519)
Q Consensus 223 --~P~VvKP~~g~gs---~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G--~E~sv~~l~dg~~~~~~~~~ 295 (519)
||+|+||..|.|| .|+.++++.+++.. .+..+++|+||+| .++++.++ |+.+......
T Consensus 134 ~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~-------------~~~~~lvqe~i~~~g~~~~v~v~--g~~~~~~~~~ 198 (324)
T 1z2n_X 134 LILPFIVKPENAQGTFNAHQMKIVLEQEGIDD-------------IHFPCLCQHYINHNNKIVKVFCI--GNTLKWQTRT 198 (324)
T ss_dssp SCSSEEEEESBCSSSSGGGEEEEECSGGGGTT-------------CCSSEEEEECCCCTTCEEEEEEE--TTEEEEEEEC
T ss_pred CCCCEEEeeCCCCCCccceeeEEEeCHHHHhh-------------cCCCEEEEEccCCCCcEEEEEEE--CCEEEEEEec
Confidence 9999999999888 99999999877542 2478999999974 67777555 3333332111
Q ss_pred ccc---------ccccCCC---------------------CCCC-CCCc-eEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 010065 296 QDH---------KRVGDGD---------------------TGPN-TGGM-GAYSPAPVLTKELQSVVMESIILPTVKGMS 343 (519)
Q Consensus 296 ~~~---------~~~~~~~---------------------~~~~-~g~~-~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~ 343 (519)
... ..+|++. .++. .... +...|.. ++. +++++.+ .++++
T Consensus 199 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~i~~~a----~~~~~ 270 (324)
T 1z2n_X 199 SLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNL-TSE---AEMRDLA----YKVRC 270 (324)
T ss_dssp CCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTS-CCH---HHHHHHH----HHHHH
T ss_pred CcccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCccccC-CCH---HHHHHHH----HHHHH
Confidence 000 0011111 0000 0000 1112333 442 2444444 35668
Q ss_pred HcCCCeeeEEEEEEEEEc-CCCceEEEEEeCCCCCCch
Q 010065 344 AEGCKFVGVLYAGLMIEK-KSGLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 344 a~g~~~~G~~~vdf~~~~-~g~~~~viEiN~R~G~~~~ 380 (519)
++|+. ++++||++++ +| ++||+|||+|||++..
T Consensus 271 ~lg~~---~~~vD~~~~~~~g-~~~vlEvN~~Pg~~~~ 304 (324)
T 1z2n_X 271 ALGVQ---LCGIDFIKENEQG-NPLVVDVNVFPSYGGK 304 (324)
T ss_dssp HHTCS---EEEEEEECGGGCS-SCEEEEEEESCCTTSC
T ss_pred HhCCc---EEeeEEEEEcCCC-CEEEEEEcCCCCcCCC
Confidence 88875 4679999984 45 7999999999998776
|
| >3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.3e-21 Score=208.21 Aligned_cols=242 Identities=20% Similarity=0.239 Sum_probs=169.3
Q ss_pred HHHHHHHHHHcCCcEEEECCChhhHHH-HHHHHHH--CCCCeeCCcHHHHHHh-cCHHHHHHHHHHcCCCCCCeeecCCH
Q 010065 136 GDAVISFCRKWSVGLVVVGPEAPLVSG-LANKLVK--AGIPTFGPSSEAAALE-GSKNFMKNLCDKYGIPTAKYKTFTDP 211 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~g~E~~~~~~-~a~~le~--~gip~~g~~~~~~~~~-~dK~~~k~~l~~~Gi~~p~~~~v~~~ 211 (519)
.+.|++.+++.++++++.+.+..+++. .....+. .| .++|++..++... .||..+|++|+++|||+|++..+.+.
T Consensus 430 ~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~g-~itg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~ 508 (750)
T 3ln6_A 430 TQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKNG-NMTSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDR 508 (750)
T ss_dssp HHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEETT-TBCTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCCEETT
T ss_pred HHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEecC-CeeCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEEECCH
Confidence 688999999999999888766544310 0000010 12 2346666655555 59999999999999999999999998
Q ss_pred HHHHHHH-HHhCCCEEEEeCCCCCCCcEEEeC---CHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC
Q 010065 212 NAAKQYI-QEEGAPIVVKADGLAAGKGVIVAM---TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE 287 (519)
Q Consensus 212 ~~~~~~~-~~~g~P~VvKP~~g~gs~GV~~v~---~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~ 287 (519)
+++.+++ +.+|||+||||..|++|+||.+++ +.+|+.++++.++. .+..+||||||+|+|++|.++ +|+
T Consensus 509 ~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~------~~~~vlVEefI~G~E~~v~Vv-gg~ 581 (750)
T 3ln6_A 509 KEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFT------EDSAILVEEYIEGTEYRFFVL-EGD 581 (750)
T ss_dssp TTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHH------HCSEEEEEECCCSEEEEEEEE-TTE
T ss_pred HHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHh------hCCcEEEEeccCCCEEEEEEE-CCE
Confidence 8887777 678999999999999999999998 99999999998764 357899999999999999887 443
Q ss_pred eeEEeccccccc---------------------c--------------------------------------ccCCCCCC
Q 010065 288 NAIPLESAQDHK---------------------R--------------------------------------VGDGDTGP 308 (519)
Q Consensus 288 ~~~~~~~~~~~~---------------------~--------------------------------------~~~~~~~~ 308 (519)
+++........ + ........
T Consensus 582 -vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nl 660 (750)
T 3ln6_A 582 -CIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNI 660 (750)
T ss_dssp -EEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCT
T ss_pred -EEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEeecccc
Confidence 33322111000 0 00112334
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEc-------CCCceEEEEEeCCCCCCchH
Q 010065 309 NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEK-------KSGLPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 309 ~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~-------~g~~~~viEiN~R~G~~~~~ 381 (519)
++|+...-+... ++++..+... ++.+++|+.+.| ||++.++ +++.+++||||++||...+
T Consensus 661 s~Gg~~~d~td~-i~p~~~~~a~--------~aa~~igl~~~G---vDli~~di~~~~~~~~~~~~iiEvN~~pg~~~h- 727 (750)
T 3ln6_A 661 STGGDSIDVTNT-MDPTYKQLAA--------EMAEAMGAWVCG---VDLIIPNATQAYSKDKKNATCIELNFNPLMYMH- 727 (750)
T ss_dssp TTTCEEEECTTT-SCHHHHHHHH--------HHHHHHTCSSCE---EEEEESCSSSCCCTTTTCCEEEEEESSCCCHHH-
T ss_pred cCCCceeecccc-CCHHHHHHHH--------HHHHHhCCCeEE---EEEEecCccccccccCCCeEEEEEcCCcchhhh-
Confidence 555544433323 5665444333 344778887656 9999875 2225899999999988544
Q ss_pred HHHHH--hCCCHHHHHHHHHh
Q 010065 382 VLMVR--LESDLAEVLLAACR 400 (519)
Q Consensus 382 ~~~~~--~G~d~~~~~i~~~~ 400 (519)
++|. .+.|..+.+++.+.
T Consensus 728 -~~p~~g~~~~v~~~ii~~lf 747 (750)
T 3ln6_A 728 -TYCQEGPGQSITPRILAKLF 747 (750)
T ss_dssp -HSCSBSCCCCCHHHHHHHHC
T ss_pred -cCcccCCCCcHHHHHHHHhC
Confidence 4443 48899999988764
|
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-19 Score=179.04 Aligned_cols=221 Identities=11% Similarity=0.091 Sum_probs=148.4
Q ss_pred cCCcEEEEC--C---C--------hhhHHHHHHHHH-HCCCCeeCCcHHHHHHhcCHHHHHHHHHHc-------CCCCCC
Q 010065 146 WSVGLVVVG--P---E--------APLVSGLANKLV-KAGIPTFGPSSEAAALEGSKNFMKNLCDKY-------GIPTAK 204 (519)
Q Consensus 146 ~~id~Vi~g--~---E--------~~~~~~~a~~le-~~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gi~~p~ 204 (519)
..+|+||+. + | ++.++.+.+... ..|++++ +++.++..+.||..|.++|.++ |||+|+
T Consensus 62 ~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~ 140 (346)
T 2q7d_A 62 GPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 140 (346)
T ss_dssp CCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCC
T ss_pred CCCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCC
Confidence 368999983 1 2 244444444333 3489988 9999999999999999999997 999999
Q ss_pred eeecCCH--HHHHHHHH--HhCCCEEEEeCCCC--CCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC--Cc
Q 010065 205 YKTFTDP--NAAKQYIQ--EEGAPIVVKADGLA--AGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE--GE 276 (519)
Q Consensus 205 ~~~v~~~--~~~~~~~~--~~g~P~VvKP~~g~--gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~--G~ 276 (519)
+..+.+. +++.+.++ .++||+|+||..|. .+.|+.++.+.++|.. .+..++|||||+ |+
T Consensus 141 t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~-------------~~~~~lvQefI~~~G~ 207 (346)
T 2q7d_A 141 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNA-------------IQPPCVVQNFINHNAV 207 (346)
T ss_dssp EEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC---------------CCEEEEECCCCTTE
T ss_pred EEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHh-------------cCCCEEEEEeeCCCCe
Confidence 9998763 45555443 57899999998653 3779999999888764 136799999997 79
Q ss_pred EEEEEEEEeCCeeEEecccc-c-------cccccCCCC-CCC-CCCceEEec-------CCCCCHHHHHHHHHHHHHHHH
Q 010065 277 EASFFALVDGENAIPLESAQ-D-------HKRVGDGDT-GPN-TGGMGAYSP-------APVLTKELQSVVMESIILPTV 339 (519)
Q Consensus 277 E~sv~~l~dg~~~~~~~~~~-~-------~~~~~~~~~-~~~-~g~~~~~~P-------~~~l~~~~~~~i~~~a~~~~~ 339 (519)
++.|.++ |+.+++..... . ...+++|+. +++ .|+..+.+| +. +++ .+++++.| .
T Consensus 208 dirv~Vv--G~~v~~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~-~~~--~~el~~lA----~ 278 (346)
T 2q7d_A 208 LYKVFVV--GESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFE-RPS--DEVIRELS----R 278 (346)
T ss_dssp EEEEEEE--TTEEEEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCC-CCC--HHHHHHHH----H
T ss_pred EEEEEEE--CCEEEEEEEecCCCcCcCccccccccccceeeccCCcccccccccccccccc-CCC--hHHHHHHH----H
Confidence 9999887 44444321100 0 112333333 333 233333334 22 332 23555555 4
Q ss_pred HHHHHcCCCeeeEEEEEEEEEc-CCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhC
Q 010065 340 KGMSAEGCKFVGVLYAGLMIEK-KSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRG 401 (519)
Q Consensus 340 ~~~~a~g~~~~G~~~vdf~~~~-~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g 401 (519)
++.+++|+++. ++|+++++ +| .+||+|||+-||++... |+.+.+++.+..
T Consensus 279 ~a~~alGl~~~---gvDii~~~~~g-~~~VlEVN~~PG~~g~~--------~~~~~i~~~l~~ 329 (346)
T 2q7d_A 279 ALRQALGVSLF---GIDIIINNQTG-QHAVIDINAFPGYEGVS--------EFFTDLLNHIAT 329 (346)
T ss_dssp HHHHHHCCCEE---EEEEEECTTTC-CEEEEEEEESCCCTTCT--------THHHHHHHHHHH
T ss_pred HHHHHhCCceE---eeEEEeecCCC-CEEEEEEeCCccccccc--------hHHHHHHHHHHH
Confidence 57789998843 59999986 44 69999999999987652 455555555443
|
| >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=164.66 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=148.1
Q ss_pred CCcEEEEC--C----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCH----HHHHHHHHHcCC---CCCCeeecCCHHH
Q 010065 147 SVGLVVVG--P----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSK----NFMKNLCDKYGI---PTAKYKTFTDPNA 213 (519)
Q Consensus 147 ~id~Vi~g--~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK----~~~k~~l~~~Gi---~~p~~~~v~~~~~ 213 (519)
.+|+|++- . +......+...||..|+|++ ++++++..|.|| ..+.++++++|+ |.|+.....+..+
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~~~~ 146 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHRE 146 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGG
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeCChhh
Confidence 68999982 1 21122345667999999999 999999999999 667788889998 8555444444433
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCCeeEEe
Q 010065 214 AKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPL 292 (519)
Q Consensus 214 ~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~~ 292 (519)
+++.+|||+|+||..|+.|+||.++++.+++.+.++.... ....+++||||+. +++.+.++ |+.+..+
T Consensus 147 ---~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~------~~~~~~vQefI~~g~DiRv~Vv--Gg~v~a~ 215 (309)
T 1i7n_A 147 ---MLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVAL------TQTYATAEPFIDAKYDIRVQKI--GNNYKAY 215 (309)
T ss_dssp ---GSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHH------HTCCEEEEECCCEEEEEEEEEE--TTEEEEE
T ss_pred ---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhc------cCCeEEEEeecCCCceEEEEEE--CCEEEEE
Confidence 3456799999999999999999999999999988875543 2367889999994 56666555 4444432
Q ss_pred ccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCceEEEEE
Q 010065 293 ESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLPKLIEY 371 (519)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~~viEi 371 (519)
.+... --++.+ +.+ .+...+.+ ++++..+.+. ++.+++ |+++ +.||++.+++| .++++|+
T Consensus 216 --~Rr~~-~g~wrt--N~~-~~~~e~~~-l~~e~~~la~--------~A~~a~gGldi---~GVDll~~~~g-~~~V~EV 276 (309)
T 1i7n_A 216 --MRTSI-SGNWKT--NTG-SAMLEQIA-MSDRYKLWVD--------ACSEMFGGLDI---CAVKAVHGKDG-KDYIFEV 276 (309)
T ss_dssp --EEESS-CTTTSC--SCC-CSSEEEEC-CCHHHHHHHH--------HHTTGGGCCSE---EEEEEEEETTS-CEEEEEE
T ss_pred --EEEcC-CCCCee--cCC-cceeeecC-CCHHHHHHHH--------HHHHHhCCCCE---EEEEEEEcCCC-CEEEEEE
Confidence 22110 011122 222 23333444 6666443333 334677 6654 55999999887 6899999
Q ss_pred eC--CCCCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 372 NV--RFGDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 372 N~--R~G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
|. .||...+. ...+.++.+++++.+.
T Consensus 277 N~~~~P~~~~~~---~~~~~~ia~~ii~~~~ 304 (309)
T 1i7n_A 277 MDCSMPLIGEHQ---VEDRQLITDLVISKMN 304 (309)
T ss_dssp ECTTCCCCSSCH---HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccchh---hhhHHHHHHHHHHHHH
Confidence 99 99764432 2246677777776553
|
| >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-17 Score=163.56 Aligned_cols=222 Identities=17% Similarity=0.133 Sum_probs=152.6
Q ss_pred CCcEEEECCCh------hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCH----HHHHHHHHHcCC---CCCCeeecCCHHH
Q 010065 147 SVGLVVVGPEA------PLVSGLANKLVKAGIPTFGPSSEAAALEGSK----NFMKNLCDKYGI---PTAKYKTFTDPNA 213 (519)
Q Consensus 147 ~id~Vi~g~E~------~~~~~~a~~le~~gip~~g~~~~~~~~~~dK----~~~k~~l~~~Gi---~~p~~~~v~~~~~ 213 (519)
.+|+|++-... .....+...||..|+|++ ++++++..|.|| ..+.++++++|+ |.++.....+..+
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~~~~ 163 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKP 163 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESSSTT
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCchhh
Confidence 68999993111 112345667999999999 999999999999 667788899998 8555444444333
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCCeeEEe
Q 010065 214 AKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPL 292 (519)
Q Consensus 214 ~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~~ 292 (519)
+++.+|||+|+||..|+.|+||.++++.+++...++.+.. ....+++||||+. +++.|.++ |+.+..+
T Consensus 164 ---~~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~------~~~~~~vQefI~~g~DiRv~VV--Gg~vva~ 232 (344)
T 2p0a_A 164 ---MVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAM------AKTYATTEAFIDSKYDIRIQKI--GSNYKAY 232 (344)
T ss_dssp ---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHH------HTCCEEEEECCCEEEEEEEEEE--TTEEEEE
T ss_pred ---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhc------cCCeEEEEeccCCCccEEEEEE--CCEEEEE
Confidence 3446799999999999999999999999999988765442 2367889999994 55666555 4444432
Q ss_pred ccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCceEEEEE
Q 010065 293 ESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLPKLIEY 371 (519)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~~viEi 371 (519)
.+... ..+.+.+.+ .+...+.+ ++++..+.+.+ +.+++ |+++ +.||++.+++| .++|+|+
T Consensus 233 --~R~~~---~g~wrtN~~-~~~~e~~~-l~~e~~~la~~--------Aa~a~gGldi---~GVDll~~~~G-~~~VlEV 293 (344)
T 2p0a_A 233 --MRTSI---SGNWKANTG-SAMLEQVA-MTERYRLWVDS--------CSEMFGGLDI---CAVKAVHSKDG-RDYIIEV 293 (344)
T ss_dssp --EEEES---SSCSSTTSS-SEEEEEEC-CCHHHHHHHHH--------HTTGGGCCSE---EEEEEEEETTS-CEEEEEE
T ss_pred --EEecC---CCCCeecCC-ceEEEeeC-CCHHHHHHHHH--------HHHHhCCCCE---EEEEEEEcCCC-CEEEEEE
Confidence 22110 111122233 34444555 67764443333 33677 6655 55999999887 6799999
Q ss_pred eC--CCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 372 NV--RFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 372 N~--R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
|. .|+...+ ....+.++.+.+++.+...
T Consensus 294 N~~~~P~~~~~---~~~~~~~Ia~~ii~~i~~~ 323 (344)
T 2p0a_A 294 MDSSMPLIGEH---VEEDRQLMADLVVSKMSQL 323 (344)
T ss_dssp ECTTCCCCGGG---HHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCcccch---hhhHHHHHHHHHHHHHHHh
Confidence 99 8876433 2346779999999888665
|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-17 Score=166.05 Aligned_cols=222 Identities=16% Similarity=0.124 Sum_probs=151.4
Q ss_pred CCcEEEEC----C--ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCH----HHHHHHHHHcCC---CCCCeeecCCHHH
Q 010065 147 SVGLVVVG----P--EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSK----NFMKNLCDKYGI---PTAKYKTFTDPNA 213 (519)
Q Consensus 147 ~id~Vi~g----~--E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK----~~~k~~l~~~Gi---~~p~~~~v~~~~~ 213 (519)
.+|+||+- . +......+...||..|+|++ ++++++..|.|| ..+.++++++|+ |.++.....+..+
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~~~~~ 258 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKE 258 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGG
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecCchhh
Confidence 68999982 1 21222355677999999999 999999999999 567778889998 7545444444333
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCCeeEEe
Q 010065 214 AKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPL 292 (519)
Q Consensus 214 ~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~~ 292 (519)
+++..|||+|+||..|+.|+||.++++.+++...++.... ....+++||||+. +++.|.++ |+.+..+
T Consensus 259 ---~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~------~~~~~~vQEfI~~g~DIRv~VV--Gg~vva~ 327 (422)
T 1pk8_A 259 ---MLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVAL------TKTYATAEPFIDAKYDVRVQKI--GQNYKAY 327 (422)
T ss_dssp ---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHH------HTSCEEEEECCCEEEEEEEEEE--TTEEEEE
T ss_pred ---hhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhc------cCceEEEEeecCCCceEEEEEE--CCEEEEE
Confidence 3356789999999999999999999999999988876543 2367889999994 56666555 4444432
Q ss_pred ccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCceEEEEE
Q 010065 293 ESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLPKLIEY 371 (519)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~~viEi 371 (519)
........ +. .+.+ .+...+.+ ++++..+.+.+ +.+++ |+++ +.||++.+++| .++|+|+
T Consensus 328 ~Rr~~~g~---Wr--tNvg-~g~~e~i~-lt~e~~elA~k--------Aaka~gGldi---aGVDlL~s~dG-~~~VlEV 388 (422)
T 1pk8_A 328 MRTSVSGN---WK--TNTG-SAMLEQIA-MSDRYKLWVDT--------CSEIFGGLDI---CAVEALHGKDG-RDHIIEV 388 (422)
T ss_dssp EEEESSSC---SS--TTSS-CEEEEEEC-CCHHHHHHHHH--------HTTGGGCCSE---EEEEEEEETTS-CEEEEEE
T ss_pred EEEcCCCC---ce--eccC-ceeeeeeC-CCHHHHHHHHH--------HHHHhCCCCE---EEEEEEEcCCC-CEEEEEE
Confidence 21111111 12 2233 24444555 67764443333 34677 6655 55999999887 6899999
Q ss_pred eC--CCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 372 NV--RFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 372 N~--R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
|. .|+...+. ...+.++.+++++.+.-.
T Consensus 389 N~s~~P~~~g~~---~~~~~~IA~~ii~~i~~~ 418 (422)
T 1pk8_A 389 VGSSMPLIGDHQ---DEDKQLIVELVVNKMTQA 418 (422)
T ss_dssp ECTTCCCCTTCH---HHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccchh---hhHHHHHHHHHHHHHHHh
Confidence 99 88664332 235778888888877554
|
| >1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=157.33 Aligned_cols=175 Identities=18% Similarity=0.171 Sum_probs=126.2
Q ss_pred hcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCC-----CCCCcEEE-eCCHHHHHHHHHHHHhhc
Q 010065 185 EGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGL-----AAGKGVIV-AMTLEEAYEAVDSMLLKN 258 (519)
Q Consensus 185 ~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g-----~gs~GV~~-v~~~~el~~a~~~~~~~~ 258 (519)
.+||..+|++|+++|||+|++..+++.+++.++++++|||+|+||..+ +++.||.+ ++|.+|+.++++.++...
T Consensus 19 ~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~ 98 (238)
T 1wr2_A 19 AMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENA 98 (238)
T ss_dssp EECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999999888899999999999998 77889999 799999999999887531
Q ss_pred c--C-CCCCCcEEEEeccC-CcEEEEEEEEeCC--eeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHH
Q 010065 259 A--F-GSAGCRVIIEEFLE-GEEASFFALVDGE--NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332 (519)
Q Consensus 259 ~--~-~~~~~~~lvEe~I~-G~E~sv~~l~dg~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~ 332 (519)
. + +.....++||+|++ |+|+.+.++.|.. .++.++.....-..+ .......| + ++++..+++.+
T Consensus 99 ~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~--------~d~~~~~~-P-l~~~~~~~~~~ 168 (238)
T 1wr2_A 99 KKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEIL--------KDVTFRLV-P-ITEKDARKMIQ 168 (238)
T ss_dssp HHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEECSTTHHHH--------CCCEEEES-S-CCHHHHHHHHH
T ss_pred hhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEecCCceeeee--------cceeeecC-C-CCHHHHHHHHH
Confidence 1 1 11236899999999 6999999998863 333332110000001 11122222 3 88888888877
Q ss_pred HHHHHHHHHHHHcCCCeeeEEEEEEE------------EEcCCCceEEEEEeCCC
Q 010065 333 SIILPTVKGMSAEGCKFVGVLYAGLM------------IEKKSGLPKLIEYNVRF 375 (519)
Q Consensus 333 ~a~~~~~~~~~a~g~~~~G~~~vdf~------------~~~~g~~~~viEiN~R~ 375 (519)
.+. ++..++|++ |..++|+- +.+..++++++||||++
T Consensus 169 ~~~----~~~~~~g~~--G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~ 217 (238)
T 1wr2_A 169 EIK----AYPILAGAR--GEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVF 217 (238)
T ss_dssp TST----THHHHHCC----CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEE
T ss_pred HHH----HHHHhcCCC--CCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeE
Confidence 653 466788877 87666631 22333139999999997
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-18 Score=140.62 Aligned_cols=100 Identities=25% Similarity=0.279 Sum_probs=86.7
Q ss_pred HHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--
Q 010065 182 AALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLK-- 257 (519)
Q Consensus 182 ~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~-- 257 (519)
+.+++||..++++|+++|||+|++. .+.+.+++.++++.++||+|+||..+++|.||.+++|.+|+.++++.++..
T Consensus 3 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~ 82 (108)
T 2cqy_A 3 SGSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAA 82 (108)
T ss_dssp CCCCCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999998 888999998888899999999999999999999999999999999877531
Q ss_pred ccCCCCCCcEEEEeccCCc-EEEEEEE
Q 010065 258 NAFGSAGCRVIIEEFLEGE-EASFFAL 283 (519)
Q Consensus 258 ~~~~~~~~~~lvEe~I~G~-E~sv~~l 283 (519)
..+ .+..+|||+||+|. |++|.++
T Consensus 83 ~~~--~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 83 SSF--GDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp HHT--SSCCEEEEECCSSSSCCCSCCC
T ss_pred hhc--CCCcEEEeeccCCCcEEEEEec
Confidence 111 14689999999995 9988654
|
| >3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=143.85 Aligned_cols=202 Identities=13% Similarity=0.059 Sum_probs=130.3
Q ss_pred CcEEEECCChhh-HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHH------------HH
Q 010065 148 VGLVVVGPEAPL-VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN------------AA 214 (519)
Q Consensus 148 id~Vi~g~E~~~-~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~------------~~ 214 (519)
+|++++.--+++ +..+.+.++..+..++ ++..+..++.||..+.++|+++|||+|++..+.... +.
T Consensus 58 ~d~lisf~s~gfpl~kai~y~~lr~p~~I-Nd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~ 136 (330)
T 3t7a_A 58 CDCLISFHSKGFPLDKAVAYAKLRNPFVI-NDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDH 136 (330)
T ss_dssp CSEEEECCCTTCCHHHHHHHHHHHCCEES-BCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSE
T ss_pred CCEEEEeccCCCcHHHHHHHHHHhCCcee-CCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccchh
Confidence 789999533333 4456677888786665 999999999999999999999999999999987521 11
Q ss_pred HH-HHHHhCCCEEEEeCCCC-----------CCCcE----EEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC--Cc
Q 010065 215 KQ-YIQEEGAPIVVKADGLA-----------AGKGV----IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE--GE 276 (519)
Q Consensus 215 ~~-~~~~~g~P~VvKP~~g~-----------gs~GV----~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~--G~ 276 (519)
.+ ..+.+++|+|+||..|. .|.|+ .++.|.+.....-... ..+..+|+||||+ |+
T Consensus 137 i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~v-------r~~~~~i~QEFI~~~G~ 209 (330)
T 3t7a_A 137 VEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNV-------RKTGSYIYEEFMPTDGT 209 (330)
T ss_dssp EEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSC-------CSSSCEEEEECCCCSSE
T ss_pred hhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhh-------ccCCcEEEEeccCCCCc
Confidence 11 12346799999999885 23333 4455433210000001 2467899999997 78
Q ss_pred EEEEEEEEeCCeeEEeccccccc-cccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEE
Q 010065 277 EASFFALVDGENAIPLESAQDHK-RVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYA 355 (519)
Q Consensus 277 E~sv~~l~dg~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~v 355 (519)
++.|.++ |+.+.+.. .+... .-.++....+.|+.. .|.. |+++..+... ++.+++|+.+ +.|
T Consensus 210 DIRv~vV--G~~vv~Am-~R~sp~~~G~~r~N~~gG~~~--~~v~-Lt~eek~iA~--------kaa~a~G~~v---~GV 272 (330)
T 3t7a_A 210 DVKVYTV--GPDYAHAE-ARKSPALDGKVERDSEGKEVR--YPVI-LNAREKLIAW--------KVCLAFKQTV---CGF 272 (330)
T ss_dssp EEEEEEE--STTCEEEE-EEECTTSSCBCCBCTTSCBCC--EECC-CCHHHHHHHH--------HHHHHTTBSE---EEE
T ss_pred eEEEEEE--CCEEEEEE-EEeCCCCCCcEEEcCCCCcee--eeec-CCHHHHHHHH--------HHHHHhCCce---EEE
Confidence 8888776 43343322 22111 011233344434332 3555 7886544333 3447888765 449
Q ss_pred EEEEEcCCCceEEEEEeCCCC
Q 010065 356 GLMIEKKSGLPKLIEYNVRFG 376 (519)
Q Consensus 356 df~~~~~g~~~~viEiN~R~G 376 (519)
|++.++++ +||+|+|.++-
T Consensus 273 DlLrs~~~--~~V~EVNg~~f 291 (330)
T 3t7a_A 273 DLLRANGQ--SYVCDVNGFSF 291 (330)
T ss_dssp EEEEETTE--EEEEEEEESCC
T ss_pred EEEEECCc--cEEEEeCCCcc
Confidence 99999876 99999999983
|
| >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-12 Score=132.61 Aligned_cols=101 Identities=23% Similarity=0.247 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC-CEEEEeC--CCCCC---------CcEEEeCCHHHHHHHHHHH
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA-PIVVKAD--GLAAG---------KGVIVAMTLEEAYEAVDSM 254 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~-P~VvKP~--~g~gs---------~GV~~v~~~~el~~a~~~~ 254 (519)
+++.+|++|+++|||+|++..+.+.+++.++++++|| |+|+||. .|+.+ -||.+++|.+|+.++++++
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~ 83 (395)
T 2fp4_B 4 QEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 83 (395)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999 8999995 44433 3499999999999999988
Q ss_pred Hhhc----cC---CCCCCcEEEEeccC-CcEEEEEEEEeCC
Q 010065 255 LLKN----AF---GSAGCRVIIEEFLE-GEEASFFALVDGE 287 (519)
Q Consensus 255 ~~~~----~~---~~~~~~~lvEe~I~-G~E~sv~~l~dg~ 287 (519)
+... .. +.....++||+|++ |+|+.+.++.|..
T Consensus 84 l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~ 124 (395)
T 2fp4_B 84 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRS 124 (395)
T ss_dssp TTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETT
T ss_pred hhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccc
Confidence 6431 01 11124799999999 6999999999864
|
| >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-10 Score=117.05 Aligned_cols=102 Identities=25% Similarity=0.272 Sum_probs=86.1
Q ss_pred cCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC-EEEEeCCCCC----CCcEEEeCCHHHHHHHHHHHHhhcc-
Q 010065 186 GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGLAA----GKGVIVAMTLEEAYEAVDSMLLKNA- 259 (519)
Q Consensus 186 ~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P-~VvKP~~g~g----s~GV~~v~~~~el~~a~~~~~~~~~- 259 (519)
.+++.+|++|+++|||+|++..+++.+++.++++++||| +|+||....+ +.||.+++|.+|+.+++++++....
T Consensus 3 l~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~ 82 (388)
T 2nu8_B 3 LHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLV 82 (388)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEEC
T ss_pred CCHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhh
Confidence 378999999999999999999999999999999999999 9999987644 3499999999999999998864211
Q ss_pred ---C---CCCCCcEEEEeccC-CcEEEEEEEEeCC
Q 010065 260 ---F---GSAGCRVIIEEFLE-GEEASFFALVDGE 287 (519)
Q Consensus 260 ---~---~~~~~~~lvEe~I~-G~E~sv~~l~dg~ 287 (519)
. +.....++||+|++ |+|+++.+++|..
T Consensus 83 t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 83 TYQTDANGQPVNQILVEAATDIAKELYLGAVVDRS 117 (388)
T ss_dssp CTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETT
T ss_pred ccccCCCCcccceEEEEEccccCCcEEEEEEEecc
Confidence 1 11235799999999 6999999999764
|
| >3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-10 Score=117.18 Aligned_cols=101 Identities=29% Similarity=0.364 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCC----CcEEEeCCHHHHHHHHHHHHhhccCCC
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAG----KGVIVAMTLEEAYEAVDSMLLKNAFGS 262 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs----~GV~~v~~~~el~~a~~~~~~~~~~~~ 262 (519)
+.+..|++|+++|||+|++..+++.+++.++++++|||+|+||....++ .||.+++|.+|+.+++++++.....+.
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~ 83 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGL 83 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCC
Confidence 4678899999999999999999999999999999999999999874333 399999999999999999874321111
Q ss_pred CCCcEEEEeccC-CcEEEEEEEEeCC
Q 010065 263 AGCRVIIEEFLE-GEEASFFALVDGE 287 (519)
Q Consensus 263 ~~~~~lvEe~I~-G~E~sv~~l~dg~ 287 (519)
..+.++||+|++ |+|+.+.++.|..
T Consensus 84 ~~~~vlVEe~v~~g~El~vgv~~D~~ 109 (397)
T 3ufx_B 84 TVKKVLVAEAVDIAKEYYAGLILDRA 109 (397)
T ss_dssp ECCCEEEEECCCEEEEEEEEEEEETT
T ss_pred ccceEEEEEeecCCeeEEEEEEecCC
Confidence 246899999999 7999999998753
|
| >3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00012 Score=73.43 Aligned_cols=165 Identities=18% Similarity=0.191 Sum_probs=86.5
Q ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC--------CcE--EEEEEEEeCC-eeE
Q 010065 222 GAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE--------GEE--ASFFALVDGE-NAI 290 (519)
Q Consensus 222 g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~--------G~E--~sv~~l~dg~-~~~ 290 (519)
+.++|+||..++.|+|+.++++.+++.+.++.. ...++||+||+ |+- +.+-+++.+- .++
T Consensus 147 ~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~---------~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~vy 217 (380)
T 3tig_A 147 GNVWIAKSSSGAKGEGILISSDATELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYNIY 217 (380)
T ss_dssp CCCEEEEESCC----CCBCCSCSHHHHHHHHHH---------TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCCEE
T ss_pred CCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc---------CCcEEEEecccCceeecCCCceeEEEEEEEEcCCCEEE
Confidence 578999999999999999999999988776542 36799999995 444 4444444331 111
Q ss_pred Eec------cccccc---------cccCCC------CCCC---CCCceE------Ee----cCCCCCHHHHHHHHHHHHH
Q 010065 291 PLE------SAQDHK---------RVGDGD------TGPN---TGGMGA------YS----PAPVLTKELQSVVMESIIL 336 (519)
Q Consensus 291 ~~~------~~~~~~---------~~~~~~------~~~~---~g~~~~------~~----P~~~l~~~~~~~i~~~a~~ 336 (519)
..- ....+. .+.++. ..|. .|.... +. ... ....+...|.+.+.+
T Consensus 218 ~y~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~-~~~~i~~~I~~ii~~ 296 (380)
T 3tig_A 218 LYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNIN-LENSILCQIKEIIRV 296 (380)
T ss_dssp ECSCCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCC-HHHHTHHHHHHHHHH
T ss_pred EEcCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHH
Confidence 110 000000 001100 0000 000000 00 000 112344555555443
Q ss_pred HHHHHHHHcC-----CCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCC
Q 010065 337 PTVKGMSAEG-----CKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGEL 403 (519)
Q Consensus 337 ~~~~~~~a~g-----~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~ 403 (519)
....+...+. ...-.++.+||++|++. ++++||||+.|+.... +.+ ++.+-+++++...+
T Consensus 297 ~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l-~~wllEVN~~P~~~q~--~i~----~l~~~~~~iavdp~ 361 (380)
T 3tig_A 297 CLSCLEPAISTKYLPYHSFQLFGFDFMVDKNL-KVWLIEVNGAPACAQK--LYA----ELCKGIVDLAISSV 361 (380)
T ss_dssp HHHHHHHHHCCTTSSSEECEEEEEEEEEBTTC-CEEEEEEESSCCCCTT--THH----HHHHHHHHHTTTTT
T ss_pred HHHHHHHHhhhcccCCceEEEEeEEEEEcCCC-cEEEEEEeCCCCccHH--hHH----HHHHHHHHHhcccc
Confidence 2222211221 11127888999999988 8999999999987542 222 56777777776664
|
| >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00058 Score=69.73 Aligned_cols=100 Identities=24% Similarity=0.084 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCC---C---CCCeeecCCH---HHHHHHHHHhC-CCEEEEeCCCCC----CCcEEEeCCHHHHHHHHHH
Q 010065 188 KNFMKNLCDKYGI---P---TAKYKTFTDP---NAAKQYIQEEG-APIVVKADGLAA----GKGVIVAMTLEEAYEAVDS 253 (519)
Q Consensus 188 K~~~k~~l~~~Gi---~---~p~~~~v~~~---~~~~~~~~~~g-~P~VvKP~~g~g----s~GV~~v~~~~el~~a~~~ 253 (519)
-+..|++|.++++ | .+++..+++. +++.+.++.+| +|+|+|+.--.+ .-||.+..|.+|+.+++.+
T Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ 87 (425)
T 3mwd_A 8 EQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKP 87 (425)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHH
Confidence 4567889999998 3 2346666655 77777778888 999999954222 2389999999999999888
Q ss_pred HHhhccCC----CCCCcEEEEeccC---CcEEEEEEEEeCC
Q 010065 254 MLLKNAFG----SAGCRVIIEEFLE---GEEASFFALVDGE 287 (519)
Q Consensus 254 ~~~~~~~~----~~~~~~lvEe~I~---G~E~sv~~l~dg~ 287 (519)
++...... ..-..++||++++ ++|+-+.+..|..
T Consensus 88 ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~ 128 (425)
T 3mwd_A 88 RLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE 128 (425)
T ss_dssp TTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT
T ss_pred HHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCC
Confidence 87432100 0124699999997 3899999998764
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0014 Score=72.12 Aligned_cols=100 Identities=25% Similarity=0.127 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCCC------CCCeeecCCH---HHHHHHHHHhC-CCEEEEeCCCCCC----CcEEEeCCHHHHHHHHHH
Q 010065 188 KNFMKNLCDKYGIP------TAKYKTFTDP---NAAKQYIQEEG-APIVVKADGLAAG----KGVIVAMTLEEAYEAVDS 253 (519)
Q Consensus 188 K~~~k~~l~~~Gi~------~p~~~~v~~~---~~~~~~~~~~g-~P~VvKP~~g~gs----~GV~~v~~~~el~~a~~~ 253 (519)
.+..|++|.++++| .+++..+++. +++.+.++.++ +|+|+|+.--.|+ -||.+..|.+|+.+++.+
T Consensus 8 Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~ 87 (829)
T 3pff_A 8 EQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKP 87 (829)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHH
Confidence 46678899999998 5677777765 55666666777 9999999543333 389999999999999988
Q ss_pred HHhhccC-C---CCCCcEEEEeccC---CcEEEEEEEEeCC
Q 010065 254 MLLKNAF-G---SAGCRVIIEEFLE---GEEASFFALVDGE 287 (519)
Q Consensus 254 ~~~~~~~-~---~~~~~~lvEe~I~---G~E~sv~~l~dg~ 287 (519)
++..... . ..-..++||++++ ++|+-+.+..|..
T Consensus 88 iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~ 128 (829)
T 3pff_A 88 RLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE 128 (829)
T ss_dssp TTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT
T ss_pred HHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCC
Confidence 8743211 0 0124699999996 3899999998764
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.27 Score=41.50 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=59.5
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC--C-Ch
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG--P-EA 157 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g--~-E~ 157 (519)
++++++|+|+|.....++..+.+..|++++.+-++++..... ....++.+. .+.+.+++++.++|.|+.. . ..
T Consensus 3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~-~i~g~pV~g---~~~l~~~~~~~~id~viia~~~~~~ 78 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKT-TMQGITIYR---PKYLERLIKKHCISTVLLAVPSASQ 78 (141)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTC-EETTEEEEC---GGGHHHHHHHHTCCEEEECCTTSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCC-EecCeEEEC---HHHHHHHHHHCCCCEEEEeCCCCCH
Confidence 467899999998777788888776678776654443221100 000111112 3457777888899988873 2 33
Q ss_pred hhHHHHHHHHHHCCCCee-CCcHH
Q 010065 158 PLVSGLANKLVKAGIPTF-GPSSE 180 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~-g~~~~ 180 (519)
.....+.+.++..|+.+. -|+..
T Consensus 79 ~~~~~i~~~l~~~gv~v~~vP~~~ 102 (141)
T 3nkl_A 79 VQKKVIIESLAKLHVEVLTIPNLD 102 (141)
T ss_dssp HHHHHHHHHHHTTTCEEEECCCHH
T ss_pred HHHHHHHHHHHHcCCeEEECCCHH
Confidence 344567777888898864 35444
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.21 Score=40.28 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=56.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCC-CcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHS-CDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAP 158 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g-~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~ 158 (519)
+++|+|+|+|.....++..|.+. | ++++.++.+....... .....+ ..|..+.+.+.+.++ ++|.|+...-..
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~--~~d~vi~~~~~~ 80 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDLAALAVLNRMGVATK-QVDAKDEAGLAKALG--GFDAVISAAPFF 80 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCHHHHHHHHTTTCEEE-ECCTTCHHHHHHHTT--TCSEEEECSCGG
T ss_pred cCeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhCCCcEE-EecCCCHHHHHHHHc--CCCEEEECCCch
Confidence 47899999987777788888877 7 7666665431111100 011222 457777777766653 689999843222
Q ss_pred hHHHHHHHHHHCCCCeeC
Q 010065 159 LVSGLANKLVKAGIPTFG 176 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~g 176 (519)
....+.+.+.+.|++++-
T Consensus 81 ~~~~~~~~~~~~g~~~~~ 98 (118)
T 3ic5_A 81 LTPIIAKAAKAAGAHYFD 98 (118)
T ss_dssp GHHHHHHHHHHTTCEEEC
T ss_pred hhHHHHHHHHHhCCCEEE
Confidence 334566667778888763
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=1.1 Score=44.03 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=58.4
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-cC--------CCCCccccCCCCCCHHHHHHHHHHcCCcEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-SN--------SGDATCIPDLDVLDGDAVISFCRKWSVGLV 151 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~--------~~~~~~v~~~d~~d~~~l~~~~~~~~id~V 151 (519)
+++|+|+|+. .....++..|.+. |++++.+..+.... .. ......+ ..|..|.+.+.+++++.++|.|
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~-~~Dl~d~~~l~~~~~~~~~d~V 87 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDA-HRPTYILARPGPRSPSKAKIFKALEDKGAIIV-YGLINEQEAMEKILKEHEIDIV 87 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEE-ECCTTCHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEECCCCCChhHHHHHHHHHhCCcEEE-EeecCCHHHHHHHHhhCCCCEE
Confidence 5789999984 4566788888877 88887775432110 00 0112223 5788899999999988899999
Q ss_pred EEC-C--ChhhHHHHHHHHHHCC-CCee
Q 010065 152 VVG-P--EAPLVSGLANKLVKAG-IPTF 175 (519)
Q Consensus 152 i~g-~--E~~~~~~~a~~le~~g-ip~~ 175 (519)
|.. + .......+.+.+.+.| ++.+
T Consensus 88 i~~a~~~n~~~~~~l~~aa~~~g~v~~~ 115 (346)
T 3i6i_A 88 VSTVGGESILDQIALVKAMKAVGTIKRF 115 (346)
T ss_dssp EECCCGGGGGGHHHHHHHHHHHCCCSEE
T ss_pred EECCchhhHHHHHHHHHHHHHcCCceEE
Confidence 983 2 1111234566666677 6643
|
| >3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.18 Score=51.94 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=50.8
Q ss_pred CCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEE--eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCc
Q 010065 200 IPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIV--AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGE 276 (519)
Q Consensus 200 i~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~--v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~ 276 (519)
++..+++...+.++...+++.+. -+|+||+++.+|.|+.+ --+.+++.+..+++.. ....+++|++++-.
T Consensus 341 l~~VpT~~c~~~~~~~~vl~~l~-~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~------~p~~yIaQe~v~ls 412 (474)
T 3n6x_A 341 LSNVPTYQLSKADDLKYVLDNLA-ELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILA------NPANYIAQPTLALS 412 (474)
T ss_dssp SEECCCEETTSHHHHHHHHHSGG-GEEEEECCCE-----EEGGGCCHHHHHHHHHHHHH------SGGGEEEEECCCCC
T ss_pred ccCCCceecCCHHHHHHHHhchh-heEEEecCCCCCCceEECCcCCHHHHHHHHHHHHh------CCCCEEEeeccCCc
Confidence 45566777778888887777766 79999999999999988 4678888888887764 23569999999864
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.67 E-value=0.41 Score=47.71 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=67.8
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
.+|||+|+|+|.....++..|.+. +++.+.+.+....... .....+ .+|..|.+.+.++++ +.|+|+...-..+
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~~~~~~~~~~~~~~~-~~d~~d~~~l~~~~~--~~DvVi~~~p~~~ 89 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVNNENLEKVKEFATPL-KVDASNFDKLVEVMK--EFELVIGALPGFL 89 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESCHHHHHHHTTTSEEE-ECCTTCHHHHHHHHT--TCSEEEECCCGGG
T ss_pred CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcCHHHHHHHhccCCcE-EEecCCHHHHHHHHh--CCCEEEEecCCcc
Confidence 468999999987666678888653 4555444321111111 112223 568888899888876 5688887322222
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY 205 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~ 205 (519)
-..+++.+-+.|++|+-.+... ..-..+.+.++++|+.....
T Consensus 90 ~~~v~~~~~~~g~~yvD~s~~~----~~~~~l~~~a~~~g~~~i~~ 131 (365)
T 3abi_A 90 GFKSIKAAIKSKVDMVDVSFMP----ENPLELRDEAEKAQVTIVFD 131 (365)
T ss_dssp HHHHHHHHHHHTCEEEECCCCS----SCGGGGHHHHHHTTCEEECC
T ss_pred cchHHHHHHhcCcceEeeeccc----hhhhhhhhhhccCCceeeec
Confidence 2356777888899987433211 11123456677888765443
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=1.1 Score=43.69 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=48.4
Q ss_pred CCccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 80 GQRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 80 ~~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.+.|+|||+|++ +....++..|.+. |++++.++....... .......+ ..|..|.+.+.+++++.++|+||-
T Consensus 18 ~~~~~vlVTGasG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~l~~v~~~-~~Dl~d~~~~~~~~~~~~~D~vih 94 (330)
T 2pzm_A 18 GSHMRILITGGAGCLGSNLIEHWLPQ-GHEILVIDNFATGKREVLPPVAGLSVI-EGSVTDAGLLERAFDSFKPTHVVH 94 (330)
T ss_dssp TTCCEEEEETTTSHHHHHHHHHHGGG-TCEEEEEECCSSSCGGGSCSCTTEEEE-ECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCccchhhhhccCCceEE-EeeCCCHHHHHHHHhhcCCCEEEE
Confidence 345799999975 4566788888877 888877764322211 11111223 568888888888887668999997
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=89.65 E-value=0.73 Score=45.06 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=46.2
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCC--CcEEEEecCCC-C-CcCC------CCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHS--CDAVFCAPGNA-G-ISNS------GDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g--~~~v~~~~~~~-~-~~~~------~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
.+|+|||+|+. .....++..|.+. | ++++.++.... . .... .....+ ..|..|.+.+.++++..++|
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQS-YETYKIINFDALTYSGNLNNVKSIQDHPNYYFV-KGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHH-CTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEE-ECCTTCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCccHHHHHHHHHHHhh-CCCcEEEEEeccccccchhhhhhhccCCCeEEE-EcCCCCHHHHHHHHhhcCCC
Confidence 46899999985 4556788888877 6 66655543321 1 1110 011222 56888999999988888899
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
+||-
T Consensus 101 ~Vih 104 (346)
T 4egb_A 101 VIVN 104 (346)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.77 E-value=2.7 Score=40.07 Aligned_cols=89 Identities=12% Similarity=0.171 Sum_probs=54.2
Q ss_pred ccEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCCCC---c--------CCCCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 82 RVVVLVIGG-GGREHALCYALKRSHSCDAVFCAPGNAGI---S--------NSGDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 82 ~~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~~~---~--------~~~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
+++|+|+|+ |.....++..|.+. |++++.+..+.... . .......+ ..|..|.+.+.+.++ ++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v-~~D~~d~~~l~~~~~--~~d 79 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIV-HGSIDDHASLVEAVK--NVD 79 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEE-CCCTTCHHHHHHHHH--TCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEE-EeccCCHHHHHHHHc--CCC
Confidence 578999997 44566788888877 88877765432110 0 00112223 578888888877775 589
Q ss_pred EEEEC-CC--hhhHHHHHHHHHHCC-CCe
Q 010065 150 LVVVG-PE--APLVSGLANKLVKAG-IPT 174 (519)
Q Consensus 150 ~Vi~g-~E--~~~~~~~a~~le~~g-ip~ 174 (519)
+||.. +. ......+.+.+.+.| ++.
T Consensus 80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~ 108 (308)
T 1qyc_A 80 VVISTVGSLQIESQVNIIKAIKEVGTVKR 108 (308)
T ss_dssp EEEECCCGGGSGGGHHHHHHHHHHCCCSE
T ss_pred EEEECCcchhhhhHHHHHHHHHhcCCCce
Confidence 99973 21 111234556666667 653
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=88.68 E-value=0.96 Score=44.22 Aligned_cols=66 Identities=18% Similarity=0.124 Sum_probs=44.1
Q ss_pred CCccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 80 GQRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 80 ~~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.++++|||+|+. .....++..|.+. |++++.++..... .....+ ..|..|.+.+.++++ ++|+||-
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~----~~~~~~-~~Dl~d~~~~~~~~~--~~d~vih 83 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQ-GRTVRGFDLRPSG----TGGEEV-VGSLEDGQALSDAIM--GVSAVLH 83 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHT-TCCEEEEESSCCS----SCCSEE-ESCTTCHHHHHHHHT--TCSEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCCC----CCccEE-ecCcCCHHHHHHHHh--CCCEEEE
Confidence 346899999985 4566788888877 8988877644221 112233 568888888877775 7899986
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.54 E-value=1 Score=40.88 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=45.3
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+++|+|+|+.| ....++..|.+. |++++.++.+....... .....+ ..|..|.+.+.++++ ++|+||.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~--~~d~vi~ 73 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR-GFEVTAVVRHPEKIKIENEHLKVK-KADVSSLDEVCEVCK--GADAVIS 73 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT-TCEEEEECSCGGGCCCCCTTEEEE-CCCTTCHHHHHHHHT--TCSEEEE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC-CCEEEEEEcCcccchhccCceEEE-EecCCCHHHHHHHhc--CCCEEEE
Confidence 57999999764 456788888877 88887775432111111 122233 578888888887775 6899987
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=88.20 E-value=2.9 Score=38.27 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=43.6
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCC-CcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHS-CDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g-~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+++|+|+|+. +....++..|.+. | ++++.+..+....... .....+ ..|..|.+.+.++++ ++|.||.
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~-G~~~V~~~~R~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~--~~D~vv~ 94 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADK-QTIKQTLFARQPAKIHKPYPTNSQII-MGDVLNHAALKQAMQ--GQDIVYA 94 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC-TTEEEEEEESSGGGSCSSCCTTEEEE-ECCTTCHHHHHHHHT--TCSEEEE
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhC-CCceEEEEEcChhhhcccccCCcEEE-EecCCCHHHHHHHhc--CCCEEEE
Confidence 5789999964 4566788888876 7 7777665432111111 112223 568888888877775 5798886
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.97 E-value=4.4 Score=38.61 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=54.5
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC--c--------CCCCCccccCCCCCCHHHHHHHHHHcCCcE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI--S--------NSGDATCIPDLDVLDGDAVISFCRKWSVGL 150 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~--~--------~~~~~~~v~~~d~~d~~~l~~~~~~~~id~ 150 (519)
+++|+|+|+. .....++..|.+. |++++.+..+.... . .......+ ..|..|.+.+.+.++ ++|.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~d~~~l~~~~~--~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI-EASLDDHQRLVDALK--QVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEE-CCCSSCHHHHHHHHT--TCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-CCcEEEEECCCcccchhHHHHHHHHHhCCeEEE-eCCCCCHHHHHHHHh--CCCE
Confidence 5789999974 4556788888877 88887765432110 0 00112223 578888888877765 6899
Q ss_pred EEEC-C------ChhhHHHHHHHHHHCC-CC
Q 010065 151 VVVG-P------EAPLVSGLANKLVKAG-IP 173 (519)
Q Consensus 151 Vi~g-~------E~~~~~~~a~~le~~g-ip 173 (519)
||.. + +......+.+.+.+.| ++
T Consensus 80 vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~ 110 (313)
T 1qyd_A 80 VISALAGGVLSHHILEQLKLVEAIKEAGNIK 110 (313)
T ss_dssp EEECCCCSSSSTTTTTHHHHHHHHHHSCCCS
T ss_pred EEECCccccchhhHHHHHHHHHHHHhcCCCc
Confidence 9972 1 1222345666677777 65
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=87.80 E-value=3.3 Score=39.36 Aligned_cols=89 Identities=12% Similarity=0.193 Sum_probs=53.8
Q ss_pred ccEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCC-CCC---cC--------CCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 82 RVVVLVIGG-GGREHALCYALKRSHSCDAVFCAPGN-AGI---SN--------SGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 82 ~~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~---~~--------~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
+++|+|+|+ |.....++..|.+. |++++.+..+. ... .. ......+ ..|..|.+.+.+.++ ++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v-~~D~~d~~~l~~~~~--~~ 77 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRKTITAANPETKEELIDNYQSLGVILL-EGDINDHETLVKAIK--QV 77 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEE-ECCTTCHHHHHHHHT--TC
T ss_pred CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEE-EeCCCCHHHHHHHHh--CC
Confidence 468999997 44566788888877 88877765432 100 00 0112223 568888888877765 68
Q ss_pred cEEEEC-C--ChhhHHHHHHHHHHCC-CCe
Q 010065 149 GLVVVG-P--EAPLVSGLANKLVKAG-IPT 174 (519)
Q Consensus 149 d~Vi~g-~--E~~~~~~~a~~le~~g-ip~ 174 (519)
|.||.. + .......+.+.+.+.| ++.
T Consensus 78 d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~ 107 (307)
T 2gas_A 78 DIVICAAGRLLIEDQVKIIKAIKEAGNVKK 107 (307)
T ss_dssp SEEEECSSSSCGGGHHHHHHHHHHHCCCSE
T ss_pred CEEEECCcccccccHHHHHHHHHhcCCceE
Confidence 999972 2 1122234556666667 653
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=87.67 E-value=2.8 Score=37.91 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=53.0
Q ss_pred cEEEEEeC-ChhHHHHHHHHH-hcCCCcEEEEecCCC-CCc----CCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE--
Q 010065 83 VVVLVIGG-GGREHALCYALK-RSHSCDAVFCAPGNA-GIS----NSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV-- 153 (519)
Q Consensus 83 ~~vliiG~-g~~~~~l~~~l~-~~~g~~~v~~~~~~~-~~~----~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~-- 153 (519)
++|+|+|+ |+....+++.|. +. |++++.+..+.. ... .......+ ..|..|.+.+.+.++ ++|.||.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~--~~d~vv~~a 81 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT-DMHITLYGRQLKTRIPPEIIDHERVTVI-EGSFQNPGXLEQAVT--NAEVVFVGA 81 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC-CCEEEEEESSHHHHSCHHHHTSTTEEEE-ECCTTCHHHHHHHHT--TCSEEEESC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC-CceEEEEecCccccchhhccCCCceEEE-ECCCCCHHHHHHHHc--CCCEEEEcC
Confidence 45999996 455677888888 55 898877754321 111 11112223 568888888877774 6899997
Q ss_pred CCChhhHHHHHHHHHHCCCC
Q 010065 154 GPEAPLVSGLANKLVKAGIP 173 (519)
Q Consensus 154 g~E~~~~~~~a~~le~~gip 173 (519)
+..+...+.+.+.+.+.|++
T Consensus 82 g~~n~~~~~~~~~~~~~~~~ 101 (221)
T 3r6d_A 82 MESGSDMASIVKALSRXNIR 101 (221)
T ss_dssp CCCHHHHHHHHHHHHHTTCC
T ss_pred CCCChhHHHHHHHHHhcCCC
Confidence 22111144555666666753
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=87.08 E-value=1.6 Score=42.47 Aligned_cols=72 Identities=14% Similarity=0.014 Sum_probs=47.2
Q ss_pred CCccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-cCC---CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 80 GQRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-SNS---GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 80 ~~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~---~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.++++|||+|+. .....++..|.+. |++++.++...... ... .....+ ..|..|.+.+.++++..++|+||-
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~l~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~D~vih 95 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLER-GDKVVGIDNFATGRREHLKDHPNLTFV-EGSIADHALVNQLIGDLQPDAVVH 95 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGSCCCTTEEEE-ECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEECCCccchhhHhhcCCceEE-EEeCCCHHHHHHHHhccCCcEEEE
Confidence 356899999965 4556788888877 88887776432211 111 111223 568888888888887777999997
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=87.04 E-value=5.1 Score=33.63 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=24.6
Q ss_pred CCCCccEEEEEeC----ChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 78 NAGQRVVVLVIGG----GGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 78 ~~~~~~~vliiG~----g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
...+.++|.|+|. |.....+++.|.+. |++++.++|.
T Consensus 10 ~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~-G~~V~~vnp~ 50 (138)
T 1y81_A 10 NSKEFRKIALVGASKNPAKYGNIILKDLLSK-GFEVLPVNPN 50 (138)
T ss_dssp ----CCEEEEETCCSCTTSHHHHHHHHHHHT-TCEEEEECTT
T ss_pred cccCCCeEEEEeecCCCCCHHHHHHHHHHHC-CCEEEEeCCC
Confidence 3456788999998 54556678888776 8986666554
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.00 E-value=2.1 Score=41.53 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=48.8
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC---------CCCCccccCCCCCCHHHHHHHHHHcCCcE
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN---------SGDATCIPDLDVLDGDAVISFCRKWSVGL 150 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~---------~~~~~~v~~~d~~d~~~l~~~~~~~~id~ 150 (519)
.+++|||+|++ +....++..|.+. |++++.++........ ......+ ..|..|.+.+.++++..++|.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAH-GYDVVIADNLVNSKREAIARIEKITGKTPAFH-ETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSSSCTHHHHHHHHHHSCCCEEE-CCCTTCHHHHHHHHHHSCCCE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHC-CCcEEEEecCCcchHHHHHHHHhhcCCCceEE-EeecCCHHHHHHHHhccCCcE
Confidence 45799999965 4556788888877 8988777533211110 0012223 578889999999888888999
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
|+-
T Consensus 82 vih 84 (341)
T 3enk_A 82 AIH 84 (341)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=2.6 Score=40.46 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=68.4
Q ss_pred cEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCCCCcC------CCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-
Q 010065 83 VVVLVIGG-GGREHALCYALKRSHSCDAVFCAPGNAGISN------SGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG- 154 (519)
Q Consensus 83 ~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~------~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g- 154 (519)
++|+|+|+ |.....++..|.+. |++++.+..+...... ......+ ..|..|.+.+.+.++ ++|.||..
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~l~~~~v~~v-~~Dl~d~~~l~~a~~--~~d~vi~~a 87 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPNSSKTTLLDEFQSLGAIIV-KGELDEHEKLVELMK--KVDVVISAL 87 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTTCSCHHHHHHHHHTTCEEE-ECCTTCHHHHHHHHT--TCSEEEECC
T ss_pred CeEEEECCCchHHHHHHHHHHHC-CCcEEEEECCCCchhhHHHHhhcCCCEEE-EecCCCHHHHHHHHc--CCCEEEECC
Confidence 58999997 44566788888877 8888777644221110 0112233 578888888877775 58999973
Q ss_pred CC--hhhHHHHHHHHHHCC-CCee-----CCcH-------HHHHHhcCHHHHHHHHHHcCCCC
Q 010065 155 PE--APLVSGLANKLVKAG-IPTF-----GPSS-------EAAALEGSKNFMKNLCDKYGIPT 202 (519)
Q Consensus 155 ~E--~~~~~~~a~~le~~g-ip~~-----g~~~-------~~~~~~~dK~~~k~~l~~~Gi~~ 202 (519)
+. ......+.+.+.+.| ++.+ |.+. ........|....+++++.|++.
T Consensus 88 ~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~ 150 (318)
T 2r6j_A 88 AFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPY 150 (318)
T ss_dssp CGGGSTTHHHHHHHHHHHCCCCEEECSCCSSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred chhhhHHHHHHHHHHHhcCCCCEEEeeccccCcccccCCCCcchhHHHHHHHHHHHHhcCCCe
Confidence 21 111234556666666 6432 2110 01122366777778888877764
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=86.79 E-value=1.4 Score=44.55 Aligned_cols=119 Identities=12% Similarity=0.152 Sum_probs=67.7
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCC--cEEEEecCCCCCcCC---------CCCccccCCCCCCHHHHHHHHHHcCCcEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSC--DAVFCAPGNAGISNS---------GDATCIPDLDVLDGDAVISFCRKWSVGLV 151 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~--~~v~~~~~~~~~~~~---------~~~~~v~~~d~~d~~~l~~~~~~~~id~V 151 (519)
++|+|+|+|+....+++.|.+..++ ++++.+.+....... .....+ ..|..|.+.+.+++++.++|+|
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~-~~D~~d~~~l~~~l~~~~~DvV 80 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDIT-TVDADSIEELVALINEVKPQIV 80 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEE-ECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEE-EecCCCHHHHHHHHHhhCCCEE
Confidence 6899999997777788888877333 444443321100000 011222 4677888888888888789999
Q ss_pred EECCChhhHHHHHHHHHHCCCCeeC-CcHHHHHH----hcCHHHHHHHHHHcCCCC
Q 010065 152 VVGPEAPLVSGLANKLVKAGIPTFG-PSSEAAAL----EGSKNFMKNLCDKYGIPT 202 (519)
Q Consensus 152 i~g~E~~~~~~~a~~le~~gip~~g-~~~~~~~~----~~dK~~~k~~l~~~Gi~~ 202 (519)
+...-...-..+.+.+.+.|++++- .+...... ...-..+.+.+++.|+..
T Consensus 81 in~ag~~~~~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~ 136 (405)
T 4ina_A 81 LNIALPYQDLTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMA 136 (405)
T ss_dssp EECSCGGGHHHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEE
T ss_pred EECCCcccChHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEE
Confidence 9842222223455666678988872 11111000 000124566777888764
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=85.97 E-value=0.83 Score=41.47 Aligned_cols=67 Identities=10% Similarity=0.175 Sum_probs=44.3
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCC-HHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLD-GDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d-~~~l~~~~~~~~id~Vi~ 153 (519)
|+|+|+|+++ ....++..|.+. |++++.++.+............+ ..|..| .+.+.+.++ ++|.||.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~~--~~d~vi~ 69 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT-DYQIYAGARKVEQVPQYNNVKAV-HFDVDWTPEEMAKQLH--GMDAIIN 69 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS-SCEEEEEESSGGGSCCCTTEEEE-ECCTTSCHHHHHTTTT--TCSEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCccchhhcCCceEE-EecccCCHHHHHHHHc--CCCEEEE
Confidence 5899999654 556788888877 88888776442211111222233 578888 888777664 6899997
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=84.57 E-value=1 Score=41.06 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=53.1
Q ss_pred CccEEEEEeCChhHHHHHHHHH-hcCCCcEEEEecCCCC-CcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChh
Q 010065 81 QRVVVLVIGGGGREHALCYALK-RSHSCDAVFCAPGNAG-ISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAP 158 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~-~~~g~~~v~~~~~~~~-~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~ 158 (519)
++.+|+|+|+|....+++..+. +..|++.+.+-+.|+. ........-++..+ .+++.++++++++|.++...-..
T Consensus 83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~---~~dL~~~v~~~~Id~vIIAvPs~ 159 (212)
T 3keo_A 83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYG---ISTINDHLIDSDIETAILTVPST 159 (212)
T ss_dssp SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEE---GGGHHHHC-CCSCCEEEECSCGG
T ss_pred CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeC---HHHHHHHHHHcCCCEEEEecCch
Confidence 4579999999965444444421 1236666655444443 22110011121112 35677778888999999854333
Q ss_pred hHHHHHHHHHHCCCCee
Q 010065 159 LVSGLANKLVKAGIPTF 175 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~ 175 (519)
..+.+++.+.+.|++-+
T Consensus 160 ~aq~v~d~lv~~GIk~I 176 (212)
T 3keo_A 160 EAQEVADILVKAGIKGI 176 (212)
T ss_dssp GHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHHcCCCEE
Confidence 44678888999998854
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=84.40 E-value=1.5 Score=36.68 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=50.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAP 158 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~ 158 (519)
+++++|+|.|.....++..|.+. |++++.++.+....... .....+ ..|..+.+.+.+. .-.+.|.|+.. +.+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~~~~~~~~~~~~~~~~-~gd~~~~~~l~~~-~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA-GKKVLAVDKSKEKIELLEDEGFDAV-IADPTDESFYRSL-DLEGVSAVLITGSDDE 82 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHTTCEEE-ECCTTCHHHHHHS-CCTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHCCCcEE-ECCCCCHHHHHhC-CcccCCEEEEecCCHH
Confidence 46899999997777788998877 89998886542111000 011122 4567776655432 22367888873 3333
Q ss_pred hHHHHHHHHHHCC
Q 010065 159 LVSGLANKLVKAG 171 (519)
Q Consensus 159 ~~~~~a~~le~~g 171 (519)
....+...+..++
T Consensus 83 ~n~~~~~~a~~~~ 95 (141)
T 3llv_A 83 FNLKILKALRSVS 95 (141)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 3223344455555
|
| >2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* | Back alignment and structure |
|---|
Probab=83.92 E-value=1.1 Score=47.76 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=67.0
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCC---CeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEE
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTA---KYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVI 239 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p---~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~ 239 (519)
+.+.++..+++++.| +.+ .+..||..+.-+.+.+- ..| ++..-.+. ++ .. -.+|+||..|..|.||.
T Consensus 475 ll~~l~~~~v~iieP-~~~-~llsNKailalLw~l~p-~hp~LLpT~f~~~~-~l----~~--~~yV~KPi~gReG~nV~ 544 (619)
T 2io8_A 475 LIDVLLRPEVLVFEP-LWT-VIPGNKAILPILWSLFP-HHRYLLDTDFTVND-EL----VK--TGYAVKPIAGRCGSNID 544 (619)
T ss_dssp HHHHHTCTTCEEESC-GGG-GTTTSTTHHHHHHHHST-TCTTCCCEESSCCH-HH----HH--HCEEEEETTCCTTTTCE
T ss_pred HHHHHHhCCCEEECH-HHH-HHhhhHHHHHHHHHhCC-CCCCCCCeeecCCc-cc----cc--CCEEEccCCCCCCCCEE
Confidence 445577778999844 443 34899999987777541 134 54433332 22 11 15999999999999999
Q ss_pred EeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcE-----EEEEEEEeCCeeEEe
Q 010065 240 VAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE-----ASFFALVDGENAIPL 292 (519)
Q Consensus 240 ~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E-----~sv~~l~dg~~~~~~ 292 (519)
+++..++. ++. ....| .+..+|.|+|++=+. +.+.++.-|+....+
T Consensus 545 i~~~~~~~---~~~--~~~~y--~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~ 595 (619)
T 2io8_A 545 LVSHHEEV---LDK--TSGKF--AEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGT 595 (619)
T ss_dssp EECTTSCE---EEE--CCCTT--TTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEE
T ss_pred EEeCCChh---Hhh--ccccc--cCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEE
Confidence 99752211 000 01112 236789999998433 336666534434433
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=83.43 E-value=2.8 Score=37.01 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=44.0
Q ss_pred cEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCCCCcC--CCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGG-GGREHALCYALKRSHSCDAVFCAPGNAGISN--SGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~--~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+|+|+|+ |+....+++.|.+. |++++.++.+...... ......+ ..|..|.+.+.+..+ ++|.||.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~--~~d~vi~ 73 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRLPSEGPRPAHVV-VGDVLQAADVDKTVA--GQDAVIV 73 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGGSCSSSCCCSEEE-ESCTTSHHHHHHHHT--TCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeChhhcccccCCceEEE-EecCCCHHHHHHHHc--CCCEEEE
Confidence 68999998 44566788888877 8888777643221111 1112223 568888888877664 5898987
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=83.28 E-value=1.9 Score=41.27 Aligned_cols=70 Identities=10% Similarity=0.096 Sum_probs=45.9
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhc-CCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGG-GREHALCYALKRS-HSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~-~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
++|||+|+. .....++..|.+. .|++++.++..............+ ..|..|.+.+.+++++.++|+||-
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~d~vih 74 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFE-VVNALDFNQIEHLVEVHKITDIYL 74 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEE-ECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceE-EecCCCHHHHHHHHhhcCCCEEEE
Confidence 689999985 4456677877765 367887775432211100111223 568888888888888778999997
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=83.08 E-value=3.9 Score=39.50 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=47.0
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc--C---C---CCCccccCCCCCCHHHHHHHHHHcCCcEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS--N---S---GDATCIPDLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~--~---~---~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
.++|||+|+. +....++..|.+. |++++.++....... . . .....+ ..|..|.+.+.++++..++|.||
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d~vi 80 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEK-GYEVYGADRRSGEFASWRLKELGIENDVKII-HMDLLEFSNIIRTIEKVQPDEVY 80 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCCSTTTTHHHHHTTCTTTEEEC-CCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCCcccccccHhhccccCceeEE-ECCCCCHHHHHHHHHhcCCCEEE
Confidence 4789999975 4566788888877 888877754322110 0 0 011223 56888888888888777899999
Q ss_pred E
Q 010065 153 V 153 (519)
Q Consensus 153 ~ 153 (519)
-
T Consensus 81 h 81 (345)
T 2z1m_A 81 N 81 (345)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=82.84 E-value=1.6 Score=44.92 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=58.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCC---cEEEEecCCCCCcCC---C-CCccccCCCCCCHHHHHH-HHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSC---DAVFCAPGNAGISNS---G-DATCIPDLDVLDGDAVIS-FCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~---~~v~~~~~~~~~~~~---~-~~~~v~~~d~~d~~~l~~-~~~~~~id~Vi~ 153 (519)
+++|+|||.|+....++..+.+..++ +++++++...+.... . ..... .+|.++.+++++ ++++ + |+|+.
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~-~Vdadnv~~~l~aLl~~-~-DvVIN 89 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQ-QITPQNYLEVIGSTLEE-N-DFLID 89 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEEC-CCCTTTHHHHTGGGCCT-T-CEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEE-eccchhHHHHHHHHhcC-C-CEEEE
Confidence 57899999998877788888877666 466666554332111 0 01111 466677766553 5543 4 99998
Q ss_pred CCChhhHHHHHHHHHHCCCCeeCC
Q 010065 154 GPEAPLVSGLANKLVKAGIPTFGP 177 (519)
Q Consensus 154 g~E~~~~~~~a~~le~~gip~~g~ 177 (519)
.+-....-.+.+.+.+.|+.|+-.
T Consensus 90 ~s~~~~~l~Im~acleaGv~YlDT 113 (480)
T 2ph5_A 90 VSIGISSLALIILCNQKGALYINA 113 (480)
T ss_dssp CCSSSCHHHHHHHHHHHTCEEEES
T ss_pred CCccccCHHHHHHHHHcCCCEEEC
Confidence 543333335677788889998743
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=82.68 E-value=3.3 Score=38.95 Aligned_cols=69 Identities=23% Similarity=0.254 Sum_probs=46.0
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHc-----CCcEEEE
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKW-----SVGLVVV 153 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~-----~id~Vi~ 153 (519)
+.+++||+|++ +....++..|.+. |.+++.++.+...... ....+ ..|..|.+.+.+++++. ++|+++.
T Consensus 13 ~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~--~~~~~-~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~ 87 (269)
T 3vtz_A 13 TDKVAIVTGGSSGIGLAVVDALVRY-GAKVVSVSLDEKSDVN--VSDHF-KIDVTNEEEVKEAVEKTTKKYGRIDILVN 87 (269)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCC--CTT--SSEEE-ECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCchhccC--ceeEE-EecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 45789999976 4566788898887 8988877644221111 12233 57888877777666543 7999997
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=82.59 E-value=4.1 Score=39.80 Aligned_cols=70 Identities=13% Similarity=0.057 Sum_probs=47.3
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC-------CCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN-------SGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-------~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.++|||+|+. .....++..|.+. |++++.++........ ......+ ..|..|.+.+.++++..++|+||-
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d~vih 86 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQSE-IGDIRDQNKLLESIREFQPEIVFH 86 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCSSSSCHHHHTTTTTTSEEE-ECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhC-CCeEEEEeCCCcccchhhHhhccCCceEEE-EccccCHHHHHHHHHhcCCCEEEE
Confidence 4789999965 4556788888877 8888777643221111 0111223 568888888888887778999997
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=82.46 E-value=5.3 Score=38.26 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=69.3
Q ss_pred ccEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCC-CCC--cC--------CCCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 82 RVVVLVIGG-GGREHALCYALKRSHSCDAVFCAPGN-AGI--SN--------SGDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 82 ~~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~--~~--------~~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
+++|+|+|+ |.....++..|.+. |++++.++.+. ... .. ......+ ..|..|.+.+.+.++ ++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v-~~D~~d~~~l~~a~~--~~d 79 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSF-SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTII-EGEMEEHEKMVSVLK--QVD 79 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEE-ECCTTCHHHHHHHHT--TCS
T ss_pred ccEEEEEcCCchhHHHHHHHHHhC-CCcEEEEECCcccccChHHHHHHHHhhcCCcEEE-EecCCCHHHHHHHHc--CCC
Confidence 578999997 44566788888877 88887775432 100 00 0112223 578888888877775 589
Q ss_pred EEEEC-CC--hhhHHHHHHHHHHCC-CCe-e----CCcH-------HHHHHhcCHHHHHHHHHHcCCCC
Q 010065 150 LVVVG-PE--APLVSGLANKLVKAG-IPT-F----GPSS-------EAAALEGSKNFMKNLCDKYGIPT 202 (519)
Q Consensus 150 ~Vi~g-~E--~~~~~~~a~~le~~g-ip~-~----g~~~-------~~~~~~~dK~~~k~~l~~~Gi~~ 202 (519)
.||.. +. ......+.+.+.+.| ++- + |.+. ........|....+++++.|++.
T Consensus 80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~ 148 (321)
T 3c1o_A 80 IVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRAIEAAALPY 148 (321)
T ss_dssp EEEECCCGGGSGGGHHHHHHHHHHCCCCEEECSCCSSCGGGCCCCHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred EEEECCCccchhhHHHHHHHHHHhCCccEEeccccccCccccccCCCcchHHHHHHHHHHHHHHcCCCe
Confidence 99973 21 112235566666667 642 2 2110 00112266888888888888764
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=82.45 E-value=7 Score=36.33 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=50.2
Q ss_pred CCCccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCCC--CCccccCCCCCCHHHHHHHHHHc-CCcEEEE
Q 010065 79 AGQRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNSG--DATCIPDLDVLDGDAVISFCRKW-SVGLVVV 153 (519)
Q Consensus 79 ~~~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~--~~~~v~~~d~~d~~~l~~~~~~~-~id~Vi~ 153 (519)
.++.|.++|.|++ +...+++..|.++ |.++++++.+........ ....+ ..|..|.+.+.++.++. ++|.++.
T Consensus 8 lf~GK~alVTGas~GIG~aia~~la~~-Ga~Vv~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~g~iDiLVN 84 (242)
T 4b79_A 8 IYAGQQVLVTGGSSGIGAAIAMQFAEL-GAEVVALGLDADGVHAPRHPRIRRE-ELDITDSQRLQRLFEALPRLDVLVN 84 (242)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSTTSTTSCCCTTEEEE-ECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHhhhhcCCeEEE-EecCCCHHHHHHHHHhcCCCCEEEE
Confidence 3456889999976 4557789999888 999888765432222111 11222 57888888888888775 5899887
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=82.20 E-value=3.3 Score=39.87 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=46.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCC-CCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-SNSG-DATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~-~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+|+|+|+|+. .....++..|.+. |++++.++...... .... ....+ ..|..|.+.+.+++++.++|.||-
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~d~vih 73 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDE-GLSVVVVDNLQTGHEDAITEGAKFY-NGDLRDKAFLRDVFTQENIEAVMH 73 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGSCTTSEEE-ECCTTCHHHHHHHHHHSCEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-CCEEEEEeCCCcCchhhcCCCcEEE-ECCCCCHHHHHHHHhhcCCCEEEE
Confidence 3689999975 4556788888877 88887775432111 1111 12223 568888888888887778999997
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=81.90 E-value=7.9 Score=32.71 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=24.5
Q ss_pred ccEEEEEeCC----hhHHHHHHHHHhcCCCcEEEEecCC
Q 010065 82 RVVVLVIGGG----GREHALCYALKRSHSCDAVFCAPGN 116 (519)
Q Consensus 82 ~~~vliiG~g----~~~~~l~~~l~~~~g~~~v~~~~~~ 116 (519)
.++|.|+|.+ .....+++.|.+. |++++.++|..
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~-G~~v~~vnp~~ 50 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQ-GYHVIPVSPKV 50 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHH-TCCEEEECSSS
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHC-CCEEEEeCCcc
Confidence 5679999984 3455677778776 88877776654
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=81.78 E-value=3.3 Score=40.08 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=63.2
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCC-CCCCHHHHHHHH-----HHcCCcEEEEC
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDL-DVLDGDAVISFC-----RKWSVGLVVVG 154 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~-d~~d~~~l~~~~-----~~~~id~Vi~g 154 (519)
+++|.|||.|+ .....+..+++. +.+.+.+.+.+....... ...... -..+.+++++.+ ...++|+|+..
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~ 79 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNVGLVD--SFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIA 79 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCGGGG--GTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEEC
T ss_pred ceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHHHHHH--hhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEEC
Confidence 57999999853 333456666665 777666654333221111 111001 124567776554 45679999986
Q ss_pred CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCC
Q 010065 155 PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT 202 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~ 202 (519)
.-...-..++..+-+.|.+++.-.|-+... .+=..+.+++++.|+..
T Consensus 80 tP~~~H~~~~~~al~aGkhVl~EKPla~~~-~ea~~l~~~a~~~g~~~ 126 (312)
T 3o9z_A 80 SPNHLHYPQIRMALRLGANALSEKPLVLWP-EEIARLKELEARTGRRV 126 (312)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSSSCSCH-HHHHHHHHHHHHHCCCE
T ss_pred CCchhhHHHHHHHHHCCCeEEEECCCCCCH-HHHHHHHHHHHHcCCEE
Confidence 544443345555667798876433322211 11223455667777754
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=81.68 E-value=1 Score=43.56 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=61.3
Q ss_pred CccEEEEEeCChhHHH-HHHHHHhcCCCcEEEEecCCCCCc-CCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChh
Q 010065 81 QRVVVLVIGGGGREHA-LCYALKRSHSCDAVFCAPGNAGIS-NSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAP 158 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~-l~~~l~~~~g~~~v~~~~~~~~~~-~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~ 158 (519)
++++|.|||.|..... .+..+.+..+++.+.+.+.++... .......+ .. ..+.+++++ ++|+|+...-..
T Consensus 5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~-~~-~~~~~~ll~-----~~D~V~i~tp~~ 77 (308)
T 3uuw_A 5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRI-MP-FDSIESLAK-----KCDCIFLHSSTE 77 (308)
T ss_dssp CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTC-CB-CSCHHHHHT-----TCSEEEECCCGG
T ss_pred ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCC-CC-cCCHHHHHh-----cCCEEEEeCCcH
Confidence 4579999999965543 566666655777775543322110 00000011 11 456666654 799999865444
Q ss_pred hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCC
Q 010065 159 LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT 202 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~ 202 (519)
.-..++..+-+.|.+++--.|-+... .+=..+.+.+++.|+..
T Consensus 78 ~h~~~~~~al~~gk~vl~EKP~~~~~-~~~~~l~~~a~~~g~~~ 120 (308)
T 3uuw_A 78 THYEIIKILLNLGVHVYVDKPLASTV-SQGEELIELSTKKNLNL 120 (308)
T ss_dssp GHHHHHHHHHHTTCEEEECSSSSSSH-HHHHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHHHCCCcEEEcCCCCCCH-HHHHHHHHHHHHcCCEE
Confidence 43345555666788876432322211 11123445677777654
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=81.58 E-value=4.7 Score=38.48 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=45.6
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-cCC-CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-SNS-GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+|||+|+. +....++..|.+. |++++.++...... ... .....+ ..|..|.+.+.+.+++.++|.|+-
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~d~vi~ 72 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLAR-GLEVAVLDNLATGKRENVPKGVPFF-RVDLRDKEGVERAFREFRPTHVSH 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-TCEEEEECCCSSCCGGGSCTTCCEE-CCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCCcCchhhcccCeEEE-ECCCCCHHHHHHHHHhcCCCEEEE
Confidence 579999975 4556788888876 88887775322111 111 111223 568888888888777678999987
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.34 E-value=3.5 Score=39.76 Aligned_cols=71 Identities=20% Similarity=0.038 Sum_probs=46.6
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc-----C---CCCCccccCCCCCCHHHHHHHHHHcCCcEE
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS-----N---SGDATCIPDLDVLDGDAVISFCRKWSVGLV 151 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~-----~---~~~~~~v~~~d~~d~~~l~~~~~~~~id~V 151 (519)
.+++|||+|+.| ....++..|.+. |++++.++....... . ......+ ..|..|.+.+.++++..++|+|
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d~V 90 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYE-DGDMADACSVQRAVIKAQPQEV 90 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCHHHHHTTCGGGEEEE-ECCTTCHHHHHHHHHHHCCSEE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCccccccchhhccccCceEEE-ECCCCCHHHHHHHHHHcCCCEE
Confidence 358999999764 456688888877 888877764322110 0 0011222 5688888888888887789999
Q ss_pred EE
Q 010065 152 VV 153 (519)
Q Consensus 152 i~ 153 (519)
|-
T Consensus 91 ih 92 (335)
T 1rpn_A 91 YN 92 (335)
T ss_dssp EE
T ss_pred EE
Confidence 97
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=81.16 E-value=1.4 Score=41.77 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=43.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+++|||+|+|.....++..|.+. |++++.++....... .....+ ..|..|.+.+.++.+ .++|.||-
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~--~~~~~~-~~Dl~d~~~~~~~~~-~~~d~vih 69 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQ-GHEVTGLRRSAQPMP--AGVQTL-IADVTRPDTLASIVH-LRPEILVY 69 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-TCCEEEEECTTSCCC--TTCCEE-ECCTTCGGGCTTGGG-GCCSEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCccccc--cCCceE-EccCCChHHHHHhhc-CCCCEEEE
Confidence 47899999886677788888877 898888764422211 112223 456666665555443 35999986
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=81.12 E-value=3.2 Score=36.82 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=43.2
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHc-CCcEEEE
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKW-SVGLVVV 153 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~-~id~Vi~ 153 (519)
+||+++|+|+++ ....++..|. . |++++.++.+.. .+ ..|..+.+.+.+++++. ++|.|+.
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~-g~~V~~~~r~~~---------~~-~~D~~~~~~~~~~~~~~~~~d~vi~ 64 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-K-KAEVITAGRHSG---------DV-TVDITNIDSIKKMYEQVGKVDAIVS 64 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-T-TSEEEEEESSSS---------SE-ECCTTCHHHHHHHHHHHCCEEEEEE
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-C-CCeEEEEecCcc---------ce-eeecCCHHHHHHHHHHhCCCCEEEE
Confidence 356899999764 4567888888 6 888877653321 23 56778888887777664 6899987
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=80.83 E-value=8.6 Score=32.56 Aligned_cols=85 Identities=7% Similarity=-0.018 Sum_probs=47.2
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCC---CCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CCh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSG---DATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~---~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~ 157 (519)
.++|+|+|.|.....+++.|.+. |+++++++.+........ ....+ ..|..+.+.+.+. .-.+.|+|+.. +.+
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~-~~d~~~~~~l~~~-~~~~ad~Vi~~~~~~ 95 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTV-VGDAAEFETLKEC-GMEKADMVFAFTNDD 95 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEE-ESCTTSHHHHHTT-TGGGCSEEEECSSCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEE-EecCCCHHHHHHc-CcccCCEEEEEeCCc
Confidence 47899999997777788888776 888887765421111111 11112 2355555444322 12358888874 344
Q ss_pred hhHHHHHHHHHH
Q 010065 158 PLVSGLANKLVK 169 (519)
Q Consensus 158 ~~~~~~a~~le~ 169 (519)
.....+...+..
T Consensus 96 ~~~~~~~~~~~~ 107 (155)
T 2g1u_A 96 STNFFISMNARY 107 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444444
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=80.80 E-value=4.7 Score=39.80 Aligned_cols=69 Identities=12% Similarity=-0.039 Sum_probs=46.0
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCC-----CcCCC---------CCccccCCCCCCHHHHHHHHHHcC
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAG-----ISNSG---------DATCIPDLDVLDGDAVISFCRKWS 147 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~-----~~~~~---------~~~~v~~~d~~d~~~l~~~~~~~~ 147 (519)
++|||+|+. .....++..|.+. |++++.++..... ..... ....+ ..|..|.+.+.++++..+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~ 106 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGK-GYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH-YADLTDASSLRRWIDVIK 106 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTTTTC--------CCEEEE-ECCTTCHHHHHHHHHHHC
T ss_pred CeEEEEcCCchHHHHHHHHHHHC-CCEEEEEecCCccccchhhhhhhhccccccccceEEE-ECCCCCHHHHHHHHHhcC
Confidence 589999975 4556788888877 8888777643211 11100 11222 568888888888887778
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+||-
T Consensus 107 ~d~Vih 112 (381)
T 1n7h_A 107 PDEVYN 112 (381)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999997
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=80.74 E-value=3.6 Score=40.02 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=73.1
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
++++|.|||.|......+..+++..+++++.+.+.++.. ........+ ..-..+.+++ +...++|+|+...-...
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~-~~~~~~~~~l---l~~~~~D~V~i~tp~~~ 79 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHL-PKAYDKLEDM---LADESIDVIYVATINQD 79 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCC-SCEESCHHHH---HTCTTCCEEEECSCGGG
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCC-CcccCCHHHH---hcCCCCCEEEECCCcHH
Confidence 357999999996555566677666566666554333221 111110001 0012345554 44557999998644444
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee---cCCHHHHHHHHH--HhCCCEEEEe
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT---FTDPNAAKQYIQ--EEGAPIVVKA 229 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~---v~~~~~~~~~~~--~~g~P~VvKP 229 (519)
-..++..+-+.|.+++.-.|-+... .+=..+.+++++.|+..-.... ......+.+.++ .+|-+..+.-
T Consensus 80 h~~~~~~al~aGk~Vl~EKP~a~~~-~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~v~~ 153 (329)
T 3evn_A 80 HYKVAKAALLAGKHVLVEKPFTLTY-DQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISISS 153 (329)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCSSH-HHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHHTTTTCSEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEccCCcCCH-HHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHhCCCCCCeEEEEE
Confidence 3345555667788776322221111 1112355667788876422111 112234555555 4676666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 519 | ||||
| d1gsoa3 | 224 | d.142.1.2 (A:104-327) Glycinamide ribonucleotide s | 3e-66 | |
| d1vkza3 | 220 | d.142.1.2 (A:94-313) Glycinamide ribonucleotide sy | 3e-46 | |
| d1gsoa1 | 99 | b.84.2.1 (A:328-426) Glycinamide ribonucleotide sy | 6e-31 | |
| d1vkza1 | 86 | b.84.2.1 (A:314-399) Glycinamide ribonucleotide sy | 6e-27 | |
| d1gsoa2 | 105 | c.30.1.1 (A:-2-103) Glycinamide ribonucleotide syn | 1e-26 | |
| d1vkza2 | 90 | c.30.1.1 (A:4-93) Glycinamide ribonucleotide synth | 6e-22 | |
| d1a9xa5 | 275 | d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta | 1e-15 | |
| d2r7ka2 | 238 | d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carbo | 1e-14 | |
| d2r85a2 | 235 | d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carbo | 6e-13 | |
| d1uc8a2 | 192 | d.142.1.7 (A:89-280) Lysine biosynthesis enzyme Ly | 2e-10 | |
| d1a9xa6 | 259 | d.142.1.2 (A:677-935) Carbamoyl phosphate syntheta | 3e-08 | |
| d1ulza3 | 214 | d.142.1.2 (A:115-328) Biotin carboxylase (BC), dom | 6e-07 | |
| d1ehia2 | 228 | d.142.1.1 (A:135-362) D-alanine:D-lactate ligase V | 9e-06 | |
| d1kjqa3 | 206 | d.142.1.2 (A:113-318) Glycinamide ribonucleotide t | 1e-05 | |
| d1e4ea2 | 211 | d.142.1.1 (A:132-342) D-alanine:D-lactate ligase V | 2e-04 | |
| d2nu7b2 | 238 | d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta- | 4e-04 | |
| d3etja3 | 198 | d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribo | 4e-04 | |
| d1eucb2 | 246 | d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta- | 6e-04 |
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Score = 211 bits (538), Expect = 3e-66
Identities = 139/224 (62%), Positives = 173/224 (77%), Gaps = 1/224 (0%)
Query: 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEE 246
SK F K+ ++ IPTA+Y+ FT+ A Y++E+GAPIV+KADGLAAGKGVIVAMTLEE
Sbjct: 1 SKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEE 60
Query: 247 AYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDT 306
A AV ML NAFG AG R++IEEFL+GEEASF +VDGE+ +P+ ++QDHKRVGD DT
Sbjct: 61 AEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDT 120
Query: 307 GPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLP 366
GPNTGGMGAYSPAPV+T ++ ME II PTVKGM+AEG + G LYAGLMI+K+ G P
Sbjct: 121 GPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQ-GNP 179
Query: 367 KLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNW 410
K+IE+N RFGD E Q +M+R++SDL E+ LAAC +L T W
Sbjct: 180 KVIEFNCRFGDLETQPIMLRMKSDLVELCLAACESKLDEKTSEW 223
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Score = 159 bits (401), Expect = 3e-46
Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 4/216 (1%)
Query: 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEE 246
SK + K KYGI TA+++ P ++ I++ P V+KADGLA GKGV++ + EE
Sbjct: 1 SKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEE 60
Query: 247 AYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDT 306
E +++ V+I+EFL G E S A+V+G N + L +D+KR+ DGD
Sbjct: 61 TIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDR 120
Query: 307 GPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLP 366
GPNTGGMG++ P + + +E + T+ G+ EG + G LY GLM+ P
Sbjct: 121 GPNTGGMGSWGPVEIPSD--TIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD--P 176
Query: 367 KLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402
++EYNVR GDPE +V++ +L RG
Sbjct: 177 YILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGG 212
|
| >d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Escherichia coli [TaxId: 562]} Length = 99 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), C-domain species: Escherichia coli [TaxId: 562]
Score = 113 bits (284), Expect = 6e-31
Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 414 SAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGV 473
+++ VVMA+ GYPG Y G I L E K+FHAGT L D + GGRVL V
Sbjct: 3 ASLGVVMAAGGYPGDYRTGDVIHGLPLEE--VAGGKVFHAGTKLADDEQVVTNGGRVLCV 60
Query: 474 TAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
TA G V EAQ RAY + +I+W F R+DIGWRA+
Sbjct: 61 TALGHTVAEAQKRAYALMTDIHWDDCFCRKDIGWRAI 97
|
| >d1vkza1 b.84.2.1 (A:314-399) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Thermotoga maritima [TaxId: 2336]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), C-domain species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (254), Expect = 6e-27
Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 413 GSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLG 472
G A+ VV+A++GYP + EKG EI IF AG A DG + GGRVL
Sbjct: 1 GFAVDVVLAARGYPDAPEKGKEITLP-------EEGLIFFAGVAEK-DGKLVTNGGRVLH 52
Query: 473 VTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDI 505
G+ EEA+ +AY E++++ G YRRDI
Sbjct: 53 CMGTGETKEEARRKAYELAEKVHFEGKTYRRDI 85
|
| >d1gsoa2 c.30.1.1 (A:-2-103) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Escherichia coli [TaxId: 562]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Escherichia coli [TaxId: 562]
Score = 101 bits (253), Expect = 1e-26
Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLVIG GGREHAL + +S + VF APGNAG + + V D A++ F +
Sbjct: 5 VLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVAI-GVTDIPALLDFAQ 63
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEG 186
+ L +VGPEAPLV G+ + AG+ FGP++ AA LEG
Sbjct: 64 NEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEG 105
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Score = 88.0 bits (218), Expect = 6e-22
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 14/102 (13%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
V ++G GGREHA+ +A + V PGNAG D T P + +
Sbjct: 3 VHILGSGGREHAIGWAFAKQGYE--VHFYPGNAGTKR--DGTNHPY------EGEKTLKA 52
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEG 186
+V+ G E LV G++N FGP E A LEG
Sbjct: 53 IPEEDIVIPGSEEFLVEGVSNWR----SNVFGPVKEVARLEG 90
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Score = 75.0 bits (184), Expect = 1e-15
Identities = 50/305 (16%), Positives = 87/305 (28%), Gaps = 42/305 (13%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAV 251
K G+ TA+ A + G P +++ G G +A EE E
Sbjct: 6 DVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEIC 65
Query: 252 DSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNT 310
+ S ++I+E L G +E + D + G +T
Sbjct: 66 A----RGLDLSPTKELLIDESLIGWKEYEMEVVRDKND----NCIIVCSIENFDAMGIHT 117
Query: 311 GGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIE 370
G +PA LT + ++ + ++ + G + G + PK
Sbjct: 118 GDSITVAPAQTLTDKEYQIMRNA----SMAVLREIGVETGGSNVQFAV------NPKNGR 167
Query: 371 YNVRFGDPECQVLMVRLE----SDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYP 426
V +P +A+V G TL+ + P
Sbjct: 168 LIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGY----TLDELMNDITGGRTPASFEP 223
Query: 427 GSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLG-VTAKGKDVEEAQD 485
I + K A L T + +G V A G+ +E+
Sbjct: 224 -------SIDYVVTKIPRFNFEKFAGANDRLT-------TQMKSVGEVMAIGRTQQESLQ 269
Query: 486 RAYLA 490
+A
Sbjct: 270 KALRG 274
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Score = 70.9 bits (173), Expect = 1e-14
Identities = 27/202 (13%), Positives = 56/202 (27%), Gaps = 23/202 (11%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247
++ L + G+ K + ++ ++VK G G+G +A + EE
Sbjct: 2 RSLEGKLLREAGLRVPK---------KYESPEDIDGTVIVKFPGARGGRGYFIASSTEEF 52
Query: 248 YEAVDSMLLKNAFGSAGCR-VIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGD- 305
Y+ + + + IEE++ G D + + D
Sbjct: 53 YKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDG 112
Query: 306 -----------TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLY 354
N + + V+ + L V E K +G
Sbjct: 113 LVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFC 172
Query: 355 AGLMIEKKSGLPKLIEYNVRFG 376
+ + + E + R
Sbjct: 173 LQSLCNEN-LELVVFEMSARVD 193
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Score = 66.1 bits (160), Expect = 6e-13
Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 24/201 (11%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247
+N + K GI + + + P++VK G GKG +A E+
Sbjct: 2 RNLERKWLKKAGIRVPE---------VYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDF 52
Query: 248 YEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGD-- 305
+ + L + I+E++ G + D + + D
Sbjct: 53 WRKAEKF-LGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAI 111
Query: 306 ----------TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYA 355
+ + VL + L + VK G
Sbjct: 112 GRIPAKDQLEFDMDITYTVIGNIPIVLRESLLM-DVIEAGERVVKAAEELMGGLWGPFCL 170
Query: 356 GLMIEKKSGLPKLIEYNVRFG 376
+ + E + R
Sbjct: 171 EGVF-TPDLEFVVFEISARIV 190
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Score = 58.4 bits (140), Expect = 2e-10
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 2/104 (1%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247
K K G+P K TD A + ++ G P+V+K + G+ +
Sbjct: 1 KWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXX 60
Query: 248 YEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIP 291
+ F I+E++E V GE AI
Sbjct: 61 XXXXXXKEVLGGFQHQ--LFYIQEYVEKPGRDIRVFVVGERAIA 102
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Score = 52.7 bits (126), Expect = 3e-08
Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 19/220 (8%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAV 251
++ ++ + T T A + +E G P+VV+A + G+ + + +
Sbjct: 3 QHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYF 62
Query: 252 DSMLLKNAFGSAGCRVIIEEFLEGE-EASFFALVDGENAIPLESAQDHKRVGDGDTGPNT 310
+ S V+++ FL+ E A+ DGE + + ++ G ++
Sbjct: 63 QTA----VSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQ-----AGVHS 113
Query: 311 GGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIE 370
G PA L++E+Q V+ + + A + G++ + K+ LIE
Sbjct: 114 GDSACSLPAYTLSQEIQDVMRQQVQ------KLAFELQVRGLMNVQFAV--KNNEVYLIE 165
Query: 371 YNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNW 410
N R V LA+V G+
Sbjct: 166 VNPRAARTVPFVSKA-TGVPLAKVAARVMAGKSLAEQGVT 204
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 214 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.3 bits (114), Expect = 6e-07
Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 23/228 (10%)
Query: 188 KNFMKNLCDKYGIPTAK--YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLE 245
K K + K G+P AK +E G P+++KA G+G+ + E
Sbjct: 1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEE 60
Query: 246 EAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE--NAIPLESAQDHKRVGD 303
E + + + +++E+F+E + + ++ + N I L
Sbjct: 61 ELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHL----------- 109
Query: 304 GDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEK-- 361
G + + V + E A K +G AG M
Sbjct: 110 ---GERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKA--AKEIGYYNAGTMEFIAD 164
Query: 362 KSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLN 409
+ G IE N R E V + D+ + + GE +
Sbjct: 165 QEGNLYFIEMNTRIQV-EHPVSEMVTGIDIVKWQIKIAAGEPLTIKQE 211
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Score = 44.6 bits (104), Expect = 9e-06
Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 12/194 (6%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFT----DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMT 243
K K L GI KY + + + + E G + VKA + G+
Sbjct: 2 KALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTN 61
Query: 244 LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQ-DHKRVG 302
EE EA+ + V LE + E Q
Sbjct: 62 AEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWY 121
Query: 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKK 362
D + + L+ E+ V + + + + G ++ +
Sbjct: 122 DYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMAL------DAYKVLNLRGEARMDFLL-DE 174
Query: 363 SGLPKLIEYNVRFG 376
+ +P L E N G
Sbjct: 175 NNVPYLGEPNTLPG 188
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Score = 43.9 bits (102), Expect = 1e-05
Identities = 12/65 (18%), Positives = 29/65 (44%)
Query: 190 FMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYE 249
+ ++ +PT+ Y+ + ++ + + G P +VK ++GKG + E+ +
Sbjct: 5 IRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQ 64
Query: 250 AVDSM 254
A
Sbjct: 65 AWKYA 69
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Length = 211 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA 229
K+ + GI T + + P+ VK
Sbjct: 2 KSLTYIVAKNAGIATPAFWVIN--KDDRPVAATFTYPVFVKP 41
|
| >d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (92), Expect = 4e-04
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK-----ADGLAAGKGVIVAMTLEE 246
K L +YG+P T P A++ + GA V A G GV V + E+
Sbjct: 9 KQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKED 68
Query: 247 AYEAVDSMLLKN 258
++ L K
Sbjct: 69 IRAFAENWLGKR 80
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Score = 39.3 bits (90), Expect = 4e-04
Identities = 11/63 (17%), Positives = 20/63 (31%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247
+ K L DK +PTA ++ + + G +VK + E
Sbjct: 2 RLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANET 61
Query: 248 YEA 250
+
Sbjct: 62 EQL 64
|
| >d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVV-KADGLAAGKGVIVAMTLEEAY 248
K L G+ ++ N A + + A +V KA LA G+G V + +
Sbjct: 10 KKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGG 67
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| d1gsoa3 | 224 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 100.0 | |
| d1vkza3 | 220 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 100.0 | |
| d1a9xa5 | 275 | Carbamoyl phosphate synthetase (CPS), large subuni | 100.0 | |
| d1a9xa6 | 259 | Carbamoyl phosphate synthetase (CPS), large subuni | 99.97 | |
| d1ulza3 | 214 | Biotin carboxylase (BC), domain 2 {Aquifex aeolicu | 99.96 | |
| d2j9ga3 | 216 | Biotin carboxylase (BC), domain 2 {Escherichia col | 99.96 | |
| d1ehia2 | 228 | D-alanine:D-lactate ligase VanA, C-domain {Leucono | 99.96 | |
| d1w96a3 | 267 | Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye | 99.95 | |
| d1iowa2 | 210 | D-ala-D-ala ligase, C-domain {Escherichia coli, ge | 99.95 | |
| d1e4ea2 | 211 | D-alanine:D-lactate ligase VanA, C-domain {Enteroc | 99.95 | |
| d1kjqa3 | 206 | Glycinamide ribonucleotide transformylase PurT, do | 99.94 | |
| d3etja3 | 198 | N5-carboxyaminoimidazole ribonucleotide synthetase | 99.93 | |
| d2r7ka2 | 238 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.92 | |
| d1uc8a2 | 192 | Lysine biosynthesis enzyme LysX ATP-binding domain | 99.91 | |
| d2r85a2 | 235 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.9 | |
| d1i7na2 | 206 | Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 | 99.76 | |
| d1gsoa1 | 99 | Glycinamide ribonucleotide synthetase (GAR-syn), C | 99.62 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 99.59 | |
| d1vkza1 | 86 | Glycinamide ribonucleotide synthetase (GAR-syn), C | 99.51 | |
| d1iowa1 | 96 | D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge | 99.45 | |
| d1e4ea1 | 130 | D-alanine:D-lactate ligase VanA, N-domain {Enteroc | 99.39 | |
| d1ehia1 | 132 | D-alanine:D-lactate ligase VanA, N-domain {Leucono | 99.37 | |
| d1gsaa2 | 192 | Prokaryotic glutathione synthetase, C-domain {Esch | 99.22 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 99.05 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 98.95 | |
| d2nu7b2 | 238 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 98.54 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 98.54 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 98.53 | |
| d1eucb2 | 246 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 98.33 | |
| d2pbza2 | 213 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 98.3 | |
| d1ulza2 | 114 | Biotin carboxylase (BC), N-terminal domain {Aquife | 97.46 | |
| d2j9ga2 | 114 | Biotin carboxylase (BC), N-terminal domain {Escher | 97.34 | |
| d1kjqa1 | 74 | Glycinamide ribonucleotide transformylase PurT, C- | 96.96 | |
| d1w96a2 | 170 | Acetyl-CoA carboxylase, BC-N subdomain {Baker's ye | 95.8 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 94.96 | |
| d1uc8a1 | 88 | Lysine biosynthesis enzyme LysX, N-terminal domain | 94.89 | |
| d2j9ga1 | 116 | Biotin carboxylase (BC), C-domain {Escherichia col | 94.2 | |
| d1b74a1 | 105 | Glutamate racemase {Aquifex pyrophilus [TaxId: 271 | 92.76 | |
| d1w96a1 | 116 | Acetyl-CoA carboxylase, BC-C subdomain {Baker's ye | 92.57 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.35 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 91.31 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 90.68 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 90.3 | |
| d1ulza1 | 123 | Biotin carboxylase (BC), C-domain {Aquifex aeolicu | 89.59 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 88.23 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 87.91 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 86.98 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 86.59 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 86.4 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 86.33 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 86.11 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 85.73 | |
| d3etja1 | 79 | N5-carboxyaminoimidazole ribonucleotide synthetase | 85.52 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 84.85 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 84.05 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 83.86 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 82.42 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 81.84 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 81.64 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 81.59 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 80.45 |
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-37 Score=288.86 Aligned_cols=223 Identities=62% Similarity=1.005 Sum_probs=201.5
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCc
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCR 266 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~ 266 (519)
+|..+|++|+++|||+|+|..+++.+++.+++++++||+||||..++||+||.++++.+++.++++.++....++..++.
T Consensus 1 SK~f~K~~~~~~~IPt~~~~~~~~~~ea~~~~~~~~~P~VvK~~~~~~gkGv~i~~~~~e~~~a~~~~~~~~~~~~~~~~ 80 (224)
T d1gsoa3 1 SKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHR 80 (224)
T ss_dssp CHHHHHHHHHHTTCCBCCEEEESSSSHHHHHHHHHCSSEEEEC------CCEEEESSHHHHHHHHTTTTCSCCTTCTTCC
T ss_pred CHHHHHHHHHHcCCCCCCceEeCCHHHHHHHHHHcCCCEEEEeCCcccccceeeehhHHHHHHHHHHHHhcccccccCce
Confidence 58999999999999999999999999999999999999999999999999999999999999999988765555555688
Q ss_pred EEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 010065 267 VIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEG 346 (519)
Q Consensus 267 ~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g 346 (519)
++|||||.|+|+++.+++||+.+.+++..+.+++.++++.+|++|+++++.|++.+++.+.+++.+.+++.+.+++.+.|
T Consensus 81 vliEefl~G~E~s~~~i~dg~~~~~~~~~~d~kr~~d~~~gp~tggmg~~~P~p~~~~~l~~~~~~~i~~~~~~~~~~~g 160 (224)
T d1gsoa3 81 IVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEG 160 (224)
T ss_dssp EEEEECCCEEEEEEEEEEESSCEEEEEEEEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred EEeecccccccceeEEEeccCceEeeecccccccccccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999888888888999999999999999999999999988899999999999988999999999
Q ss_pred CCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCCCCccc
Q 010065 347 CKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNW 410 (519)
Q Consensus 347 ~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~~~~~~ 410 (519)
+.|.|+++++|+++.+| +|||||+|+|+|.+.++.+++.+..||.+++++++.|++....++|
T Consensus 161 ~~~~G~l~~~~mit~~G-~p~vlE~N~R~Gdpe~~~il~~l~~dl~e~~~~~~~g~L~~~~~~w 223 (224)
T d1gsoa3 161 NTYTGFLYAGLMIDKQG-NPKVIEFNCRFGDLETQPIMLRMKSDLVELCLAACESKLDEKTSEW 223 (224)
T ss_dssp CCCEEEEEEEEEEETTC-CEEEEEEESSCCTTTHHHHHHHBCSCHHHHHHHHHTTCGGGCCCCB
T ss_pred ceeeeeeccceeeeeCC-CEEEEEEecCCCCCcceeehhhhcCCHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999997 8999999999999999899999988999999999999987766665
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6e-33 Score=261.68 Aligned_cols=212 Identities=37% Similarity=0.640 Sum_probs=183.1
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCc
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCR 266 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~ 266 (519)
+|..+|++|+++|||+|+|..+++.+++.++++++|||+||||++++||+||++|++.+++.++++.++....++..+..
T Consensus 1 sK~~~K~~l~~~gIptp~~~~~~~~~e~~~~~~~ig~PvVvKP~~~~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~ 80 (220)
T d1vkza3 1 SKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGP 80 (220)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSC
T ss_pred CHHHHHHHHHHCCCCCCCeEEeCCHHHHHHHHHHcCCCEEEEeccccccccceeeccHHHHHHHhhhhccccccccccce
Confidence 58999999999999999999999999999999999999999999999999999999999999999998865555556688
Q ss_pred EEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 010065 267 VIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEG 346 (519)
Q Consensus 267 ~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g 346 (519)
+++|||++|+|++++.+.+|+.+.+++..+.+...+.++.++..++.++..+.+ .+.......++. ++.+.+++.+.+
T Consensus 81 vliEe~i~g~e~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~a~~~~~ 158 (220)
T d1vkza3 81 VVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKIEEL-FDKTLWGVEKEG 158 (220)
T ss_dssp EEEEECCCSEEEEEEEEEETTEEEECCCCEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHHHHH-HHHHHHHHHHTT
T ss_pred EeeecccccccceeEEEEeCCEEEEcccccccccccccccccccccccccccCC-ccchhhHHHHHH-HHHHHHHHhhhh
Confidence 999999999999999999888777777666666777777788888888888887 666655555543 334556666677
Q ss_pred CCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 347 CKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 347 ~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+.++|++|+||++++++ |||||+|+|+|++.++.+++.+..||.+++++++.|+
T Consensus 159 ~~~~G~~~~d~~~~~~g--p~viEiN~R~G~~~~~~~~~~~~~dl~~~~l~~a~g~ 212 (220)
T d1vkza3 159 YAYRGFLYLGLMLHDGD--PYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGG 212 (220)
T ss_dssp CCCEEEEEEEEEEETTE--EEEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHHHTS
T ss_pred hhhhccceeEEEeeCCC--EEEEEEECCCCCCcceeeeecccccHHHHHHHHHcCC
Confidence 77779999999999887 9999999999998888888888779999999999987
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-32 Score=267.06 Aligned_cols=273 Identities=18% Similarity=0.162 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCc
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCR 266 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~ 266 (519)
||.++|++++++|||+|++..+++.+++.++++++|||+||||..++||+|+.++++.+|+.++++++... ..+..
T Consensus 1 Dr~~~r~~~~~~gip~~~~~~~~~~~ea~~~~~~ig~PvviKp~~~~gg~G~~~v~~~~el~~~~~~a~~~----~~~~~ 76 (275)
T d1a9xa5 1 DRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDL----SPTKE 76 (275)
T ss_dssp SHHHHHHHHHHTTCCCCSEEEESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH----CTTSC
T ss_pred CHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeeCHHHHHHHHHHHHhh----CCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999988753 24578
Q ss_pred EEEEeccCC-cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 010065 267 VIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE 345 (519)
Q Consensus 267 ~lvEe~I~G-~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~ 345 (519)
++|||||+| +|+++.+++|++....+.....+ +...+.+.+.+....|++.|+++.++++.+.+. +++.++
T Consensus 77 v~iEe~l~g~~e~~v~~~~d~~g~~~~~~~~~~----~~~~~~~~~~~~~~aP~~~L~~~~~~~i~~~a~----~i~~~l 148 (275)
T d1a9xa5 77 LLIDESLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIMRNASM----AVLREI 148 (275)
T ss_dssp EEEEECCTTSEEEEEEEEECTTCCEEEEEEEEE----SSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHH----HHHHHH
T ss_pred EEEeeecCCchhheeeeEEecCCCEEEEEeecc----ccccCcccCceeEEcCCCcCCHHHHHHHHHHHH----HHHHHc
Confidence 999999999 79999999976422222222222 123456777778889998899999888888774 677899
Q ss_pred CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCC-CCCCcccCCCcEEEEEEecCC
Q 010065 346 GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGEL-TGVTLNWSPGSAMVVVMASKG 424 (519)
Q Consensus 346 g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~-~~~~~~~~~~~a~~~~l~~~~ 424 (519)
|+.+ |.+++||+++.+++++|++|+|||++.+.. .....+|+|+.++.+++++|.. ....+.+..+.....+ .
T Consensus 149 g~~~-G~~~~ef~~~~~~~~~~~iE~npR~~~~~~-~~~~~tgidlv~~~~~~a~G~~l~~~~~~~~~~~~~~~~--~-- 222 (275)
T d1a9xa5 149 GVET-GGSNVQFAVNPKNGRLIVIEMNPRVSRSSA-LASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASF--E-- 222 (275)
T ss_dssp TCCS-EEEEEEEEECTTTCCEEEEEEESSCCHHHH-HHHHHHSCCHHHHHHHHHTTCCGGGSBCTTTTTCSBSCS--C--
T ss_pred CceE-CceEEEEEEeCCCCEEEEEEecCCCCceeh-hhhHhhCCCHHHHHHHHHcCCCCcccccccccccCcccc--C--
Confidence 9863 999999999876668999999999866443 4445679999999999999963 2222222211110000 0
Q ss_pred CCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHh
Q 010065 425 YPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAV 491 (519)
Q Consensus 425 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~ 491 (519)
|.. ....+. ..++...........+.+..+.+|.|++.|+|++||+++|++++
T Consensus 223 -~~~--~~~~~k-----------~~~~~~~~~~~~~~~l~~~~~s~g~vi~~G~t~~eA~~ka~raL 275 (275)
T d1a9xa5 223 -PSI--DYVVTK-----------IPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGL 275 (275)
T ss_dssp -CBC--SSEEEE-----------EEECCGGGCTTSCCBCCSSCCCCEEEEEEESSHHHHHHHHHHHS
T ss_pred -CCC--CcEecC-----------ccceecCCCCCCCCEeCCCcccCEEEEEEECCHHHHHHHHHHhC
Confidence 000 000000 00111100000011222334458999999999999999999885
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.7e-30 Score=245.96 Aligned_cols=253 Identities=20% Similarity=0.240 Sum_probs=179.7
Q ss_pred HHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEE
Q 010065 190 FMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVII 269 (519)
Q Consensus 190 ~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lv 269 (519)
+|+++|+++|||+|++..+++.+++.++++++|||+||||+++.||+|+.++++.+||.+++.++... ..+.++++
T Consensus 1 rF~~~l~~lgi~~p~~~~v~s~~ea~~~a~~iGfPvivKps~~~gG~G~~iv~~~~el~~~~~~a~~~----~~~~~vli 76 (259)
T d1a9xa6 1 RFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSV----SNDAPVLL 76 (259)
T ss_dssp HHHHHHHHHTCCCCCEEECCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC------------EE
T ss_pred ChHHHHHHCCCCCCCceEECCHHHHHHHHHHhCCCEEEEECCCCCCCccEeecCHHHHHHHhhhhhcc----cccchhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999887542 24578999
Q ss_pred EeccCC-cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010065 270 EEFLEG-EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCK 348 (519)
Q Consensus 270 Ee~I~G-~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~ 348 (519)
|+|++| +|+++++++||+.+.. .....+.. ..+.|.|+.....|+..++++..+++++.+. ++++.+++.
T Consensus 77 e~~i~~~~Eiev~~i~Dg~~~~i-~~i~e~i~----~~gvhsgds~~~~p~~~l~~~~~~~l~~~a~----kia~~l~~~ 147 (259)
T d1a9xa6 77 DHFLDDAVEVDVDAICDGEMVLI-GGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQ----KLAFELQVR 147 (259)
T ss_dssp EBCCTTCEEEEEEEEECSSCEEE-EEEEEESS----CTTSCGGGCCEEESCSSCCHHHHHHHHHHHH----HHHHHTTCC
T ss_pred hhhcCCCeEEEEEEEEeCCcEEE-Eeeeeccc----cCcceeEeccccccCccCCHHHHHHHHHHHH----HHHHHhhhc
Confidence 999999 8999999999875543 33333321 3456667666677877799999999998774 577788865
Q ss_pred eeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCC-CCc---ccCCCcEEEEEEecCC
Q 010065 349 FVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTG-VTL---NWSPGSAMVVVMASKG 424 (519)
Q Consensus 349 ~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~-~~~---~~~~~~a~~~~l~~~~ 424 (519)
|.+++||+++++. +||||+|||+..+.. .....+|+|+.++.+++++|.... ..+ ...++.++.....+
T Consensus 148 --G~~~vef~v~~~~--~y~iEvNpR~~~~~~-~~~k~tg~~lv~~~~~i~~G~~l~~~~~~~~~~~~~~~vk~~v~~-- 220 (259)
T d1a9xa6 148 --GLMNVQFAVKNNE--VYLIEVNPRAARTVP-FVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLP-- 220 (259)
T ss_dssp --EEEEEEEEECSSC--EEEEEEECSCCTTHH-HHHHHHSCCHHHHHHHHHTTCCHHHHTCCSCCCCSSEEEEEEECG--
T ss_pred --cceeEEEEEECCE--EEEEEcccccCCcee-eeeHhhCCCHHHHHHHHhcCCCccccccccccCCCcEEEEEEcCC--
Confidence 9999999997655 999999999988754 555668999999999999998311 111 11122333222111
Q ss_pred CCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHH
Q 010065 425 YPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLA 490 (519)
Q Consensus 425 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~ 490 (519)
++. .+++... .| ....+.|.|++.|+|.+||..+|..+
T Consensus 221 -------------f~k----~~~~d~~--------lg---~emkstGevm~~g~~~~eA~~Ka~~~ 258 (259)
T d1a9xa6 221 -------------FNK----FPGVDPL--------LG---PEMRSTGEVMGVGRTFAEAFAKAQLG 258 (259)
T ss_dssp -------------GGG----CTTSCCC--------CC---SSCCCCEEEEEEESSHHHHHHHHHHH
T ss_pred -------------ccc----cCCCCCC--------CC---CCeeeeeeEEEEcCCHHHHHHHHHhc
Confidence 000 0111100 11 12245689999999999999999876
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.96 E-value=9.6e-29 Score=231.61 Aligned_cols=201 Identities=18% Similarity=0.216 Sum_probs=151.9
Q ss_pred HHHHHHHHHHcCCCCCC-e-eecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCC
Q 010065 188 KNFMKNLCDKYGIPTAK-Y-KTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGC 265 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~-~-~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~ 265 (519)
|.+||++|+++|+|+++ + ..+++.+++.++++++|||+||||.++++|+|+.++++.+|+..+++...........+.
T Consensus 1 K~~~k~~~~~aGvP~~p~~~~~v~s~~ea~~~~~~ig~P~vvKP~~~~~s~gv~~v~~~~el~~a~~~~~~~~~~~~~~~ 80 (214)
T d1ulza3 1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRG 80 (214)
T ss_dssp HHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHcCCCcCCCcCCCCCCHHHHHHHHHHcCCCEEEeeccccCCccceeeeccHHHHHHHHHHHHHHHHhcCCC
Confidence 88999999999999855 3 468999999999999999999999999999999999999999998886553321113457
Q ss_pred cEEEEeccCCcEEEEEEE-EeCC-eeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 010065 266 RVIIEEFLEGEEASFFAL-VDGE-NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMS 343 (519)
Q Consensus 266 ~~lvEe~I~G~E~sv~~l-~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~ 343 (519)
.+||||||+|.|+++..+ .|++ .+..+...... . .++........+...++++...++.+.+ .++++
T Consensus 81 ~viiEe~i~G~e~~~~~~~~d~~~~~~~i~~~~~~--~-----~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~ 149 (214)
T d1ulza3 81 DLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCS--I-----QRRNQKLVEIAPSLILTPEKREYYGNIV----TKAAK 149 (214)
T ss_dssp CEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEE--E-----EETTEEEEEEESCSSCCHHHHHHHHHHH----HHHHH
T ss_pred CceeheeecCcceeeEEEEEcCCCeEEEEeccccc--c-----CccccceeEEeecccccHHHHHHHHHHH----HHHHH
Confidence 899999999977777665 4665 33322211100 0 0111112334444447777777777766 46888
Q ss_pred HcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCC
Q 010065 344 AEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGEL 403 (519)
Q Consensus 344 a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~ 403 (519)
++|+. |.+++||+++++| ++||||+|||+|++.. .....+|+|++++++++++|+.
T Consensus 150 ~lg~~--G~~~vef~~~~dg-~~~~iEin~R~~~~~~-~~~~a~Gidl~~~~v~~alG~~ 205 (214)
T d1ulza3 150 EIGYY--NAGTMEFIADQEG-NLYFIEMNTRIQVEHP-VSEMVTGIDIVKWQIKIAAGEP 205 (214)
T ss_dssp HTTCC--EEEEEEEEECTTC-CEEEEEEECSCCTTHH-HHHHHHCCCHHHHHHHHHTTCC
T ss_pred HcCCc--cceEEEEEECCCC-CEEEEEecCcCCCchh-hhHHHHCcCHHHHHHHHHCCCC
Confidence 99976 9999999999987 7999999999987643 2333469999999999999984
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.4e-28 Score=228.90 Aligned_cols=201 Identities=22% Similarity=0.241 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHcCCCCCC---eeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCC
Q 010065 187 SKNFMKNLCDKYGIPTAK---YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSA 263 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~---~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~ 263 (519)
||..+|++++++|||+++ ..++++.+++.++++++|||+||||.+++||+|+.++++.+|+.++++.++.+......
T Consensus 1 dK~~~~~~~~~~GvP~vp~~~~~~~~s~dea~~~a~~iG~PvivKp~~~~ggrGv~~v~~~~el~~a~~~~~~ea~~~~~ 80 (216)
T d2j9ga3 1 DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFS 80 (216)
T ss_dssp SHHHHHHHHHHHTCCBCCBCSSCCCSCHHHHHHHHHHHCSSEEEEEEEEETTEEEEEECSHHHHHHHHHHHHHHTC--CC
T ss_pred CHHHHHHHHHHcCcCCCCCCCCCCCCCHHHHHHHHHHcCCCEEEecccccCCceeEeecchhHHHHHHHHHHHHHHHhcC
Confidence 899999999999999744 34678999999999999999999999999999999999999999999887643222234
Q ss_pred CCcEEEEeccCC-cEEEEEEEEeCCe-eEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 010065 264 GCRVIIEEFLEG-EEASFFALVDGEN-AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKG 341 (519)
Q Consensus 264 ~~~~lvEe~I~G-~E~sv~~l~dg~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~ 341 (519)
++.+++|+|++| ++..+.+++||+. ...+.. +.. . ..+++....+..|++.++++..+.+.+.+ .++
T Consensus 81 ~~~vlvE~~i~g~~~~~~~i~~dg~~~~~~~~~-~~~-~-----~~~~~~~~~~~~P~~~~~~~~~~~~~~~~----~~~ 149 (216)
T d2j9ga3 81 NDMVYMEKYLENPRHVEIQVLADGQGNAIYLAE-RDC-S-----MQRRHQKVVEEAPAPGITPELRRYIGERC----AKA 149 (216)
T ss_dssp CCCEEEEECCSSCEEEEEEEEEESSSCEEEEEE-EEE-E-----EEETTEEEEEEESCTTCCHHHHHHHHHHH----HHH
T ss_pred CCceEeeeeecCcccceeEEEEcCCCCeeeccc-ccc-C-----cccccCCeEEeccCccccchhhhhhHHHH----HHH
Confidence 678999999999 5566666678763 332321 111 1 11233455778899878888777777766 456
Q ss_pred HHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCC
Q 010065 342 MSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGEL 403 (519)
Q Consensus 342 ~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~ 403 (519)
+..+++. |++|+||++++++ +|+||+|||++++.. .....+|+|+.+.++++++|..
T Consensus 150 ~~~~~~~--G~~~~e~~~~~~~--~~viEvnpR~~~~~~-~~~~~tGvdlv~~~i~~alG~~ 206 (216)
T d2j9ga3 150 CVDIGYR--GAGTFEFLFENGE--FYFIEMNTRIQVEHP-VTEMITGVDLIKEQLRIAAGQP 206 (216)
T ss_dssp HHHTTCE--EEEEEEEEEETTE--EEEEEEECSCCTTHH-HHHHHHCCCHHHHHHHHHTTCC
T ss_pred HHHcCcc--CcceeEeEecCCe--EEEEeecCccccchh-hhhHHHCcCHHHHHHHHHCCCC
Confidence 6777765 9999999999665 999999999988754 4445679999999999999984
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=99.96 E-value=1.2e-27 Score=226.12 Aligned_cols=198 Identities=19% Similarity=0.202 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHH----HHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCC
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPN----AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGS 262 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~----~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~ 262 (519)
||..||++|+++|||+|++..++..+ .+.++.+.+|||+|+||..++||.||.+++|.+|+..+++.+..
T Consensus 1 dK~~~k~~l~~~gi~tp~~~~~~~~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~GV~~~~~~~el~~~~~~~~~------ 74 (228)
T d1ehia2 1 DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQ------ 74 (228)
T ss_dssp SHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTT------
T ss_pred CHHHHHHHHHHcCCCCCCEEEEchhhcChHHHHHHHHHhCCCEEEEEeccCCCccceeccccchhhhhhhhhcc------
Confidence 89999999999999999999987433 35667788999999999999999999999999999999998864
Q ss_pred CCCcEEEEeccCC-cEEEEEEEEeCCeeEE-eccc-----cccccccCCCCCCCCCCceE-EecCCCCCHHHHHHHHHHH
Q 010065 263 AGCRVIIEEFLEG-EEASFFALVDGENAIP-LESA-----QDHKRVGDGDTGPNTGGMGA-YSPAPVLTKELQSVVMESI 334 (519)
Q Consensus 263 ~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~-~~~~-----~~~~~~~~~~~~~~~g~~~~-~~P~~~l~~~~~~~i~~~a 334 (519)
....+++|+|+.| +|+++.++.+++.... +... ......+++..++..++... ..|.. ++++..+.+++.+
T Consensus 75 ~~~~~liee~i~g~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~i~~~~ 153 (228)
T d1ehia2 75 YDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMA 153 (228)
T ss_dssp TCSCEEEEECCCCSCEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC-CCHHHHHHHHHHH
T ss_pred cccccccceEEeccceEEEEEeeCCCcceeeeeeeeccccccccceeeeeccccccccccccchhh-hhHHHHHHHHHHH
Confidence 4578999999999 7888877765543221 1111 11223445455555555444 44555 8999888888876
Q ss_pred HHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHH
Q 010065 335 ILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAAC 399 (519)
Q Consensus 335 ~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~ 399 (519)
.++++++|++ |++|+||++|++| ++||+|||+|||.+.+ ++++. .|+|+.+++..++
T Consensus 154 ----~~~~~~lg~~--~~~~iD~~~d~~g-~~~~lEvN~~Pg~~~~-s~~~~~~~~~G~~~~~li~~ii 214 (228)
T d1ehia2 154 ----LDAYKVLNLR--GEARMDFLLDENN-VPYLGEPNTLPGFTNM-SLFKRLWDYSDINNAKLVDMLI 214 (228)
T ss_dssp ----HHHHHHTTCC--EEEEEEEEECTTC-CEEEEEEESSCCCSTT-CGGGTGGGGGTCCHHHHHHHHH
T ss_pred ----HHHHhhhhcC--CeeeEEEEEcCCC-cEEEEEecCCCCCCcc-cHHHHHHHHhCCCHHHHHHHHH
Confidence 4688999988 9999999999987 8999999999999876 45543 4999998765443
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1e-26 Score=224.94 Aligned_cols=183 Identities=15% Similarity=0.102 Sum_probs=137.9
Q ss_pred CCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCc-EEEEE
Q 010065 203 AKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGE-EASFF 281 (519)
Q Consensus 203 p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~-E~sv~ 281 (519)
+....+.+.+++.++++++|||+||||++++||+||.+|++.+|+.++++.++.. ..+..+||||||+|. ++.+.
T Consensus 44 ~~~~~v~s~eea~~~a~~igfPvvVKP~~~~gs~Gv~iv~~~~el~~a~~~a~~~----s~~~~vlVEe~I~G~~~~~~~ 119 (267)
T d1w96a3 44 YQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE----IPGSPIFIMKLAGRARHLEVQ 119 (267)
T ss_dssp HGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHH----STTCCEEEEECCCSCEEEEEE
T ss_pred ccccccCCHHHHHHHHHhcCCCEEEEeecccCCeeEEeecccchhhhhhhhhhhh----cccchhhhhhhccchhhhhhh
Confidence 4445677899999999999999999999999999999999999999999988754 245789999999995 45555
Q ss_pred EEEeCC-eeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEE
Q 010065 282 ALVDGE-NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIE 360 (519)
Q Consensus 282 ~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~ 360 (519)
++.++. ..+.+........ .+........+...++....+++.+.+ .++++++|+. |.+++||+++
T Consensus 120 ~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~lg~~--g~~~vd~~~~ 186 (267)
T d1w96a3 120 LLADQYGTNISLFGRDCSVQ-------RRHQKIIEEAPVTIAKAETFHEMEKAA----VRLGKLVGYV--SAGTVEYLYS 186 (267)
T ss_dssp EEECTTSCEEEEEEEEEEEE-------ETTEEEEEEESCCSSCHHHHHHHHHHH----HHHHHHHTCC--EEEEEEEEEC
T ss_pred heeccCcceeeecccccccc-------cccccccceeecccCchHHHHHHHHHH----HHHHHHhCCc--cccceeeeee
Confidence 666654 2222222111100 011122334455548888887777766 4688899977 9999999999
Q ss_pred cCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCC
Q 010065 361 KKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGEL 403 (519)
Q Consensus 361 ~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~ 403 (519)
.+++++||||||||++++.. .....+|+|+.+.++++++|.+
T Consensus 187 ~~~g~~yviEiNpR~~~~~~-~~~~atGvdl~~~~i~~a~G~p 228 (267)
T d1w96a3 187 HDDGKFYFLELNPRLQVEHP-TTEMVSGVNLPAAQLQIAMGIP 228 (267)
T ss_dssp TTTCCEEEEEEECSCCTTTH-HHHHHHCCCHHHHHHHHHTTCC
T ss_pred CCCCcEEEEEecccccccee-EEeeeeCCCHHHHHHHHHCCCC
Confidence 65458999999999988754 3344579999999999999984
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.95 E-value=5.6e-27 Score=218.68 Aligned_cols=195 Identities=18% Similarity=0.212 Sum_probs=145.2
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCH-------HHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccC
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDP-------NAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAF 260 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~-------~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~ 260 (519)
|.++|++|+++|||||++..+++. ++.......++||+|+||.++++|.||.++++.+|+.++++..+.
T Consensus 1 K~~tk~~~~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~---- 76 (210)
T d1iowa2 1 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ---- 76 (210)
T ss_dssp HHHHHHHHHHTTCCBCCEEEEEHHHHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTT----
T ss_pred CHHHHHHHHHcCCCCCCeEEEechhhcccchHHHHHHHHhcCCCEEEeeccccCceecccccchhhhhHHHHHhhc----
Confidence 889999999999999999998643 344455678999999999999999999999999999999988763
Q ss_pred CCCCCcEEEEeccCCcEEEEEEEEeC--CeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHH
Q 010065 261 GSAGCRVIIEEFLEGEEASFFALVDG--ENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPT 338 (519)
Q Consensus 261 ~~~~~~~lvEe~I~G~E~sv~~l~dg--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~ 338 (519)
.+..+++|+|++|+|+++.++.+. ..+....... .+...............+.. .+....+++.+.+
T Consensus 77 --~~~~vlve~~i~g~e~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 145 (210)
T d1iowa2 77 --HDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGT----FYDYEAKFLSDETQYFCPAG-LEASQEANLQALV---- 145 (210)
T ss_dssp --TCSEEEEEECCCCCEEEEEEETTEECCCEEEECSSS----SSCHHHHHTCSCCEEESSCC-CCHHHHHHHHHHH----
T ss_pred --cCccccccccccCceeEEEeecCcccceeEEecccc----eeeecccccccccccccccc-cccccchhHHHHH----
Confidence 567899999999999999888432 1111111111 11100001111223334444 7888777777765
Q ss_pred HHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchH---HHHHHhCCCHHHHHHHHHh
Q 010065 339 VKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQ---VLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 339 ~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~---~~~~~~G~d~~~~~i~~~~ 400 (519)
.+++++++++ |++|+||++|++| ++||+|||+|||++... .+....|+|+.+++..++.
T Consensus 146 ~~~~~~~~~~--g~~~vdf~~d~~g-~~~~lEiN~~pg~~~~s~~~~~~~~~Gi~~~~li~~ii~ 207 (210)
T d1iowa2 146 LKAWTTLGCK--GWGRIDVMLDSDG-QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 207 (210)
T ss_dssp HHHHHHHTCC--SEEEEEEEECTTS-CEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCC--CceEEEEEECCCC-CEEEEEEeCCCCCCCccHHHHHHHHhCCCHHHHHHHHHH
Confidence 4688899987 9999999999987 89999999999987542 2223459999999887764
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.95 E-value=7.6e-27 Score=217.90 Aligned_cols=196 Identities=18% Similarity=0.171 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCc
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCR 266 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~ 266 (519)
||..||++++++|||+|++..+++.++. ..++++||+|+||.+++||+||.+|++.+|+.++++.++. ....
T Consensus 1 DK~~~~~~~~~~Gi~tP~~~~~~~~~~~--~~~~~~fP~viKP~~gg~s~Gv~~v~~~~el~~~~~~~~~------~~~~ 72 (211)
T d1e4ea2 1 DKSLTYIVAKNAGIATPAFWVINKDDRP--VAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ------YDSK 72 (211)
T ss_dssp SHHHHHHHHHHTTCBCCCEEEECTTCCC--CGGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTT------TCSS
T ss_pred CHHHHHHHHHHCCCCCCCeEEECchhHH--HHHhcCCCEEEeeccccCcchhccccccccchhhcccccc------cccc
Confidence 8999999999999999999999865432 2467899999999999999999999999999999998864 4578
Q ss_pred EEEEeccCCcEEEEEEEEeCCeeEEecccc-----cccc-ccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHH
Q 010065 267 VIIEEFLEGEEASFFALVDGENAIPLESAQ-----DHKR-VGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVK 340 (519)
Q Consensus 267 ~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~-----~~~~-~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~ 340 (519)
+++|+|++|+++++.++.+........... .... ...+......+...+..|+. +++...+++++.+ .+
T Consensus 73 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~i~~~a----~~ 147 (211)
T d1e4ea2 73 ILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD-LSAEERGRIQETV----KK 147 (211)
T ss_dssp EEEEECCCSEEEEEEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS-SCHHHHHHHHHHH----HH
T ss_pred cccccccccccceeeccCCCcceeeeeceeeccccchhhhhhhhhhcccccceeeecccc-ccHhhhhhhHHHH----HH
Confidence 999999999999999987654222211110 0000 11111222334455677888 7888888888776 46
Q ss_pred HHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH----HhCCCHHHHHHHHH
Q 010065 341 GMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV----RLESDLAEVLLAAC 399 (519)
Q Consensus 341 ~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~----~~G~d~~~~~i~~~ 399 (519)
+++++|+. |++++||+++++| ++||+|||+|||++.. +.++ ..|+|+.+++..++
T Consensus 148 ~~~~lg~~--g~~~id~~~~~~g-~~~viEiN~~pg~~~~-s~~~~~~~~~G~~~~~li~~iv 206 (211)
T d1e4ea2 148 IYKTLGCR--GLARVDMFLQDNG-RIVLNEVNTLPGFTSY-SRYPRMMAAAGISLPELIDRLI 206 (211)
T ss_dssp HHHHTTCE--EEEEEEEEECTTC-CEEEEEEESSCCCSTT-CHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHhhccC--CeeEEEEEEcCCC-CEEEEEEeCCCCCCCc-cHHHHHHHHcCCCHHHHHHHHH
Confidence 88899976 9999999999876 8999999999998765 3332 24999987765544
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=3.9e-25 Score=205.12 Aligned_cols=196 Identities=16% Similarity=0.155 Sum_probs=148.2
Q ss_pred CHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCC
Q 010065 187 SKNFMKNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGC 265 (519)
Q Consensus 187 dK~~~k~~l-~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~ 265 (519)
||..+|+++ +++|||+|+|..+.+.+++.++++++|||+|+||++|+||+|++++++.+|+.++++........ ...
T Consensus 1 ~~~~~rrla~~~~Gip~p~~~~v~s~~dl~~~~~~ig~PvVvKP~~g~gs~gv~~v~~~~el~~a~~~~~~~~~~--~~~ 78 (206)
T d1kjqa3 1 NREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRA--GAG 78 (206)
T ss_dssp SHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGG--GCC
T ss_pred ChHHHHHHHHHHCCCCCCCCeEECCHHHHHHHHHHhCCCEEEeeccCCccCCceEEcCHHHHHHHHHHHHhhccc--Ccc
Confidence 788999977 68999999999999999999999999999999999999999999999999999998876643222 246
Q ss_pred cEEEEeccCC-cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010065 266 RVIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSA 344 (519)
Q Consensus 266 ~~lvEe~I~G-~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a 344 (519)
.+++|+++.+ .++++....+................. .......+.. .+.+...++.+.+ .+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~ 145 (206)
T d1kjqa3 79 RVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDG--------DYRESWQPQQ-MSPLALERAQEIA----RKVVLA 145 (206)
T ss_dssp CEEEEECCCCSEEEEEEEEEETTEEEECCCEEEEEETT--------EEEEEEECCC-CCHHHHHHHHHHH----HHHHHH
T ss_pred eeeeeeccccceeeeeeeeecCCCceeeccceeeeccC--------ccceeecccc-CCHHHHHHHHHHH----Hhhhhh
Confidence 7888999988 677777776655333222221111100 0123344555 6777777666655 456677
Q ss_pred cCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 345 EGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 345 ~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+++. |.+|+||+.++++ +|++|||+|||++.+. ....+|+|++++++++++|.
T Consensus 146 ~~~~--g~~~~e~~~~~~~--~~viEin~R~~~~~~~-~~~~~~v~~~e~~ir~~~Gl 198 (206)
T d1kjqa3 146 LGGY--GLFGVELFVCGDE--VIFSEVSPRPHDTGMV-TLISQDLSEFALHVRAFLGL 198 (206)
T ss_dssp HCSS--EEEEEEEEEETTE--EEEEEEESSCCGGGGG-HHHHBSSCHHHHHHHHHTTC
T ss_pred hhce--eeeccccccccCC--ceEEEeecCcccccce-ehhhcCCCHHHHHHHHHcCC
Confidence 7766 9999999999887 9999999999987763 44467999999999999996
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=4.1e-25 Score=203.64 Aligned_cols=190 Identities=14% Similarity=0.035 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCc
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCR 266 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~ 266 (519)
||..||++|+++|||+|+|..+++.+++.++++++|||+|+||..+++|.|..++.+.+++..+... ....
T Consensus 1 DK~~~K~~l~~~GIptp~~~~v~s~~d~~~~~~~ig~P~vvKp~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~ 71 (198)
T d3etja3 1 DRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAE---------CYGE 71 (198)
T ss_dssp SHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHCSCEEEEESSSCBTTBSEEEECGGGGGGSCGG---------GTTT
T ss_pred CHHHHHHHHHHCCcCCCCceEECCHHHHHHHHHHcCCCeeeeecccccccceeeecchhhHHHHHhc---------cCce
Confidence 8999999999999999999999999999999999999999999888866665555555554332221 3478
Q ss_pred EEEEeccCC-cEEEEEEEEeCCe-eEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010065 267 VIIEEFLEG-EEASFFALVDGEN-AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSA 344 (519)
Q Consensus 267 ~lvEe~I~G-~E~sv~~l~dg~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a 344 (519)
+++|+|+++ .++++.++.++.. +............ ........|+. ++++...++.+.+. +++.+
T Consensus 72 ~i~ee~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~p~~-~~~~~~~~~~~~~~----~~~~~ 138 (198)
T d3etja3 72 CIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQD--------GILRTSVAFPQ-ANAQQQARAEEMLS----AIMQE 138 (198)
T ss_dssp EEEEECCCCSEEEEEEEEECTTSCEEECCCEEEEEET--------TEEEEEEECSS-CCHHHHHHHHHHHH----HHHHH
T ss_pred EEEeeeccccccccceeeecccceeeeeceeeccccc--------cceeeeeeccc-cccchhhhhhhhhh----HHHHh
Confidence 999999997 7888888875542 2222211111110 01124456777 88888888777664 56677
Q ss_pred cCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCC
Q 010065 345 EGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGEL 403 (519)
Q Consensus 345 ~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~ 403 (519)
+++. |.+++||++++++ +||+|+|+||+++.++ ....+|+|.+++++++++|.+
T Consensus 139 l~~~--g~~~~~~~~~~~~--~~v~Evn~Rp~~~g~~-~~~~~~~s~~e~~~ra~lglp 192 (198)
T d3etja3 139 LGYV--GVMAMECFVTPQG--LLINELAPRVHNSGHW-TQNGASISQFELHLRAITDLP 192 (198)
T ss_dssp HTCC--EEEEEEEEEETTE--EEEEEEESSCCGGGTT-HHHHSSSCHHHHHHHHHTTCC
T ss_pred hhhc--ccchhheeecCCc--EEEEEEECCcccccce-EeecccCCHHHHHHHHHcCCC
Confidence 7765 9999999999876 9999999999987763 445679999999999999984
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.92 E-value=3.4e-26 Score=217.64 Aligned_cols=184 Identities=14% Similarity=0.133 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCC-CCCC
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFG-SAGC 265 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~-~~~~ 265 (519)
||..||++|+++|||+|+.. .. +++++||+||||++++||+||++++|.+|+.++++.+....... ....
T Consensus 1 DK~~~k~~l~~~Gip~P~~~--~~-------~~~i~~PvVVKP~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~ 71 (238)
T d2r7ka2 1 ERSLEGKLLREAGLRVPKKY--ES-------PEDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIA 71 (238)
T ss_dssp CHHHHHHHHHHTTCCCCCEE--SS-------GGGCCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred CHHHHHHHHHHCCCCCcccc--cC-------HhHCCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHhhccCCCC
Confidence 89999999999999999843 22 35689999999999999999999999999999999887531110 0125
Q ss_pred cEEEEeccCCcEEEEEEEEeC--CeeEEecccccc----------ccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHH
Q 010065 266 RVIIEEFLEGEEASFFALVDG--ENAIPLESAQDH----------KRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMES 333 (519)
Q Consensus 266 ~~lvEe~I~G~E~sv~~l~dg--~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~ 333 (519)
.+++||||+|.|++++++.+. ..+........+ ........++..+......|+..++++..+++++.
T Consensus 72 ~v~vEe~i~G~e~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 151 (238)
T d2r7ka2 72 NAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEM 151 (238)
T ss_dssp HCEEEECCCSEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHH
T ss_pred cEEEEEeecCceEEEEEeecccccceEEEeeccCCccEEEEEEEcCHHheeccCccccCccccccCccccHHHHHHHHHH
Confidence 799999999999999988643 122111111100 00011133444555555556655888888888888
Q ss_pred HHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCch
Q 010065 334 IILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 334 a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~ 380 (519)
+.+.+.++....+..+.|++++||++|++| ++||+|||||+||+..
T Consensus 152 ~~~i~~~l~~~~~~~~~G~~~ve~~~~~dg-~~~viEinpR~~G~~~ 197 (238)
T d2r7ka2 152 GDKLVAKAKELVPPGMIGPFCLQSLCNENL-ELVVFEMSARVDGGTN 197 (238)
T ss_dssp HHHHHHHHHHHSTTCCCEEEEEEEEECTTS-CEEEEEEESSBCGGGG
T ss_pred HHHHHHHHHHhcccCccccccHhhHhhcCC-CEEEEEEECCCCCCCc
Confidence 766443333333445569999999999987 8999999999977543
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=4.8e-24 Score=195.25 Aligned_cols=190 Identities=19% Similarity=0.133 Sum_probs=126.3
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcE
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRV 267 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~ 267 (519)
|+.|+++|+++|||+|++..+.+.+++.+++++++||+|+||..+++|+||.++.+.++............. ..+..+
T Consensus 1 K~~~~~~l~~~GipvP~t~~~~~~~~~~~~~~~~g~P~ivKP~~g~~g~gv~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 78 (192)
T d1uc8a2 1 KWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGG--FQHQLF 78 (192)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC------------C--TTTTCE
T ss_pred CHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhCCCEEEECCcCCcccceeeccccccchhhHHHHHHHhc--cCCCCE
Confidence 899999999999999999999999999999999999999999999999999877666655543332211111 134679
Q ss_pred EEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 010065 268 IIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGC 347 (519)
Q Consensus 268 lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~ 347 (519)
++||||+|.++++.++..++........... . + .... +......+.. .+++.... ... +..+.+
T Consensus 79 lvqefi~g~~~~~~v~~~~g~~~~~~~~~~~-~-~--~~~~--~~~~~~~~~~-~~~~~~~~-~~~-------~~~~~~- 142 (192)
T d1uc8a2 79 YIQEYVEKPGRDIRVFVVGERAIAAIYRRSA-H-W--ITNT--ARGGQAENCP-LTEEVARL-SVK-------AAEAVG- 142 (192)
T ss_dssp EEEECCCCSSCCEEEEEETTEEEEEEEC--------------------CEECC-CCHHHHHH-HHH-------HHHHTT-
T ss_pred EEEEecCCCCeeEEEEEECCEEEeEEEeeec-c-c--cccc--cccccccccc-chhhhhhh-hhh-------HHHhhh-
Confidence 9999999987788888755544433221111 1 1 1111 1112222333 34443322 222 223443
Q ss_pred CeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 348 KFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 348 ~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
.|++++||++++++ +||+|||+|||+.. +...+|+|+.+.+++.+++.
T Consensus 143 --~g~~~vD~~~~~~~--~~vlEiN~r~g~~~---~~~~~G~d~~~~ii~~a~~l 190 (192)
T d1uc8a2 143 --GGVVAVDLFESERG--LLVNEVNHTMEFKN---SVHTTGVDIPGEILKYAWSL 190 (192)
T ss_dssp --CSEEEEEEEEETTE--EEEEEEETTCCCTT---HHHHHCCCHHHHHHHHHHHT
T ss_pred --ccccceEEEecCCC--EEEEEEcCCCchhH---HHHHHCcCHHHHHHHHHHHh
Confidence 27888999999876 99999999998743 44557999999999998764
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.90 E-value=5.7e-23 Score=194.65 Aligned_cols=182 Identities=15% Similarity=0.085 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCc
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCR 266 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~ 266 (519)
||.+||++|+++|||+|+.. .. +++++||+||||.+++||+|++++++.+++.++++.+...... .....
T Consensus 1 DK~~~k~~l~~~Gip~P~~~--~~-------~~~i~~P~IVKP~~g~gs~Gv~~v~~~~e~~~~~~~~~~~~~~-~~~~~ 70 (235)
T d2r85a2 1 DRNLERKWLKKAGIRVPEVY--ED-------PDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRK-EDLKN 70 (235)
T ss_dssp SHHHHHHHHHHTTCCCCCBC--SC-------GGGCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSG-GGCCS
T ss_pred CHHHHHHHHHHcCCCCchhh--hC-------HHHcCCCEEEEECCCCCCCCeEEEechHHHHHHHHHHHhhhhh-CCCcc
Confidence 89999999999999999843 22 2468999999999999999999999999999999988632111 13468
Q ss_pred EEEEeccCCcEEEEEEEEeCC--eeEEecccccc----ccc------cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHH
Q 010065 267 VIIEEFLEGEEASFFALVDGE--NAIPLESAQDH----KRV------GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESI 334 (519)
Q Consensus 267 ~lvEe~I~G~E~sv~~l~dg~--~~~~~~~~~~~----~~~------~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a 334 (519)
+++|||++|.++.++.+.+.. ........... ..+ .......+........|+..++.+..+.+++.+
T Consensus 71 ~iiee~i~G~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 150 (235)
T d2r85a2 71 IQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAG 150 (235)
T ss_dssp EEEEECCCCEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHHHHH
T ss_pred hhHHhhcCCeEEEEEEeecccccceEEEEeecCCcceeeEEEeccceeEecccCCCCcceeeccCcccchhHHHHHHHHH
Confidence 999999999999999887532 11111111000 000 000111112222233344447888888888887
Q ss_pred HHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCch
Q 010065 335 ILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 335 ~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~ 380 (519)
.+.+.++..+++.. +|++|+||+++++| ++|++|||||+||+..
T Consensus 151 ~~~~~~l~~~~~~~-~G~~~ve~~~~~dg-~~~viEiNpR~~Gg~~ 194 (235)
T d2r85a2 151 ERVVKAAEELMGGL-WGPFCLEGVFTPDL-EFVVFEISARIVAGTN 194 (235)
T ss_dssp HHHHHHHHHHSSCC-CEEEEEEEEECTTS-CEEEEEEECSCCGGGG
T ss_pred HHHHHHHHHhcCCc-eeeeeEEEEEcCCC-CEEEEEEeCCCCCCCc
Confidence 76555555566544 49999999999987 8999999999966543
|
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=8.9e-18 Score=155.15 Aligned_cols=174 Identities=11% Similarity=0.033 Sum_probs=111.9
Q ss_pred CcHHHHHHhcCHHHH--HHHHHHcCCCCCCeeecC--CHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHH
Q 010065 177 PSSEAAALEGSKNFM--KNLCDKYGIPTAKYKTFT--DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVD 252 (519)
Q Consensus 177 ~~~~~~~~~~dK~~~--k~~l~~~Gi~~p~~~~v~--~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~ 252 (519)
++.+++..|.||..+ +.++...+++.|.+.... +..+..++....+||+|+||.+|+||+||.++++.+++..+++
T Consensus 1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~PvVvKP~~g~~g~Gv~~v~~~~~l~~~~~ 80 (206)
T d1i7na2 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIAS 80 (206)
T ss_dssp SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGGSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHH
T ss_pred CCHHHHHHhcCcHHHHHHHHHHhcccCCCccceeecccccchhHHhhhcCCceEEecCCCCCCCCeEEEeecchhhhHHH
Confidence 578999999999653 333333344443332222 1112233344568999999999999999999999999999998
Q ss_pred HHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHH
Q 010065 253 SMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVM 331 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~ 331 (519)
.++. .+..+++|+||++ .++.|.++ +++ +..+...... .++..+.+.++.. .+. ..++..+.+.
T Consensus 81 ~~~~------~~~~~~vqe~I~~~~dirv~vi-g~~-~~~~~~~~~~---~~~~~n~~~~~~~--~~~--~~~~~~~~~~ 145 (206)
T d1i7na2 81 VVAL------TQTYATAEPFIDAKYDIRVQKI-GNN-YKAYMRTSIS---GNWKTNTGSAMLE--QIA--MSDRYKLWVD 145 (206)
T ss_dssp HHHH------HTCCEEEEECCCEEEEEEEEEE-TTE-EEEEEEESSC---TTTSCSCCCSSEE--EEC--CCHHHHHHHH
T ss_pred HHhh------ccCeEEEEEeecccceEEEEEE-ecc-eeEEEeeccc---cccccccccCccc--ccc--CChHHHHHHH
Confidence 8875 3578999999986 78888777 443 4433222211 2223334443332 222 2444333322
Q ss_pred HHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCC
Q 010065 332 ESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFG 376 (519)
Q Consensus 332 ~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G 376 (519)
. +...++.. |+++|||+++++| ++||+|||+.|.
T Consensus 146 ~--------~~~~~~~~--~~~gvD~~~~~dG-~~yvlEvN~~~~ 179 (206)
T d1i7na2 146 A--------CSEMFGGL--DICAVKAVHGKDG-KDYIFEVMDCSM 179 (206)
T ss_dssp H--------HTTGGGCC--SEEEEEEEEETTS-CEEEEEEECTTC
T ss_pred H--------Hhhhcccc--ceeeEEEEEcCCC-CEEEEEEcCCCc
Confidence 2 22445443 8888999999987 899999998773
|
| >d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), C-domain species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1e-15 Score=122.20 Aligned_cols=97 Identities=47% Similarity=0.814 Sum_probs=84.2
Q ss_pred CcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhh
Q 010065 413 GSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVE 492 (519)
Q Consensus 413 ~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~ 492 (519)
.+++.+++++.|||..+.++..|.+++.. ..++..+||++......+.+.++++|+..|++.|+|.++|++++++.++
T Consensus 2 ~~av~VVlAs~GYP~~~~kg~~I~~~~~~--~~~~~~ifhagt~~~~~~~l~t~GGRVL~v~~~g~tl~~A~~~aY~~i~ 79 (99)
T d1gsoa1 2 RASLGVVMAAGGYPGDYRTGDVIHGLPLE--EVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGHTVAEAQKRAYALMT 79 (99)
T ss_dssp SEEEEEEEEETTTTSCCCCCCBCBCCCSS--CCTTEEEEESSEEEC---CEEECSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CceEEEEEccCCCCCCccCCCcccccccc--cccceEEeeeeeeecccCcEecCCCeEEEEEEecCCHHHHHHHHHHHHH
Confidence 46788999999999999999999987632 3467899999987645678999999999999999999999999999999
Q ss_pred ccccCCeeecccccccccc
Q 010065 493 EINWPGGFYRRDIGWRALP 511 (519)
Q Consensus 493 ~i~~~g~~~r~dig~~~~~ 511 (519)
+|+|+|.|||+|||.+.+.
T Consensus 80 ~I~~~g~~yR~DIG~rai~ 98 (99)
T d1gsoa1 80 DIHWDDCFCRKDIGWRAIE 98 (99)
T ss_dssp TCBCTTEECCSCTTHHHHH
T ss_pred hcCCCCCCcccchhhHHhc
Confidence 9999999999999988764
|
| >d1vkza1 b.84.2.1 (A:314-399) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), C-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=2.9e-14 Score=110.27 Aligned_cols=86 Identities=45% Similarity=0.714 Sum_probs=77.2
Q ss_pred CcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhh
Q 010065 413 GSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVE 492 (519)
Q Consensus 413 ~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~ 492 (519)
++++.+++++.|||..+.++..|.+.+ +..+||++... ..+.+.++++|+..|++.|+|.++|++++++.++
T Consensus 1 G~a~~VVlas~GYP~~~~kg~~I~~~~-------~~~ifhAgt~~-~~~~l~t~GGRVl~v~a~g~~l~~A~~~aY~~i~ 72 (86)
T d1vkza1 1 GFAVDVVLAARGYPDAPEKGKEITLPE-------EGLIFFAGVAE-KDGKLVTNGGRVLHCMGTGETKEEARRKAYELAE 72 (86)
T ss_dssp SEEEEEEEECTTTTTSCCCCCBCBCCS-------SCCEEESSEEE-ETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CcEEEEEEccCCCCCCccCCCcccccc-------eeEEEEeceec-cCCeEEEcCCEEEEEEEeCCCHHHHHHHHHHHHh
Confidence 467889999999999998888887643 45689998876 6899999999999999999999999999999999
Q ss_pred ccccCCeeeccccc
Q 010065 493 EINWPGGFYRRDIG 506 (519)
Q Consensus 493 ~i~~~g~~~r~dig 506 (519)
+|+++|.|||+||.
T Consensus 73 ~I~~~g~~yR~DIA 86 (86)
T d1vkza1 73 KVHFEGKTYRRDIA 86 (86)
T ss_dssp HCBCTTCBCCTTCC
T ss_pred cCCCCCCEecCCCC
Confidence 99999999999983
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.45 E-value=1.5e-14 Score=114.64 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=71.5
Q ss_pred eeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCC
Q 010065 56 FFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLD 135 (519)
Q Consensus 56 ~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d 135 (519)
.||+|||||.|+||+||+.||.. +..+|.+. ++++..+++.+.....
T Consensus 3 ~kI~vl~GG~S~E~~iSl~Sa~~------------------v~~~L~~~-~~~v~~i~~~~~~~~~-------------- 49 (96)
T d1iowa1 3 DKIAVLLGGTSAEREVSLNSGAA------------------VLAGLREG-GIDAYPVDPKEVDVTQ-------------- 49 (96)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHH------------------HHHHHHHT-TCEEEEECTTTSCGGG--------------
T ss_pred ceEEEEeCcCchhhHhHHhhHHH------------------HHHHHHHc-CeeEeeecCccccchh--------------
Confidence 48999999999999999999865 67777766 8998888654321110
Q ss_pred HHHHHHHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcC
Q 010065 136 GDAVISFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGS 187 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~d 187 (519)
.+..++|.||+ .+||+.+|++ |+.+|+||+|+++.++++++|
T Consensus 50 -------~~~~~~d~vF~~lHG~~GEdG~iQ~~---le~l~IPytGs~~~asal~~D 96 (96)
T d1iowa1 50 -------LKSMGFQKVFIALHGRGGEDGTLQGM---LELMGLPYTGSGVMASALSMD 96 (96)
T ss_dssp -------TTTTTEEEEEECCCSTTTSSSHHHHH---HHHHTCCBSSCCHHHHHHHHC
T ss_pred -------hhccCceeEEEeccCcchhccHHHHH---HHHcCCCccCCCHHHHHHhcC
Confidence 11236899998 3899988777 999999999999999999987
|
| >d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA, N-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.39 E-value=6.1e-15 Score=124.67 Aligned_cols=111 Identities=13% Similarity=0.144 Sum_probs=69.1
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC---------
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD--------- 124 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~--------- 124 (519)
.||||+|||||.|+||+||+.||.+ +...|.+. +++++.+.-+..+.|....
T Consensus 1 ~K~kV~vl~GG~S~EheVSl~Sa~~------------------v~~~L~~~-~y~v~~i~i~k~g~w~~~~~~~~~~~~~ 61 (130)
T d1e4ea1 1 NRIKVAILFGGCSEEHDVSVKSAIE------------------IAANINKE-KYEPLYIGITKSGVWKMCEKPCAEWENE 61 (130)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHH------------------HHHHSCTT-TEEEEEEEECTTSCEEEESCCCTTCCCT
T ss_pred CCcEEEEEeCCCchhhHHHHHHHHH------------------HHHhhccc-ceeEEEEEecCCCcEEecccchhhhhcc
Confidence 3799999999999999999999977 45555443 5555554433222221100
Q ss_pred -Ccccc-CCCCCCHHHHHH---HHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhc
Q 010065 125 -ATCIP-DLDVLDGDAVIS---FCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEG 186 (519)
Q Consensus 125 -~~~v~-~~d~~d~~~l~~---~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~ 186 (519)
..... ..+......+.. ..+..++|+||| .+||+.+|++ |+.+++||+|++..+++++|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvvF~~lHG~~GEDG~iQgl---le~~~iPy~Gsgv~aSai~M 130 (130)
T d1e4ea1 62 NCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL---FELSGIPFVGCDIQSSAICM 130 (130)
T ss_dssp TCEEEEECSCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTSSHHHHH---HHHHTCCBSSCCHHHHHHHH
T ss_pred cccceeecCCcccccccccccccccccccCEEEEeccCCCccchHHHHH---HHHcCCCccCCCHHHHHhhC
Confidence 00000 000000000000 001135899999 3899998887 99999999999999999875
|
| >d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA, N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=99.37 E-value=1.6e-13 Score=116.12 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=69.0
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC-CccccCCCC
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD-ATCIPDLDV 133 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~-~~~v~~~d~ 133 (519)
|+||+|+|||.|+||+||+.||++ +..+|.+...|+++.+..+..+.+.... .... ...
T Consensus 1 Kk~Iavl~GG~S~EheVSl~Sa~~------------------v~~~L~~~~~y~v~~i~i~k~g~~~~~~~~~~~--~~~ 60 (132)
T d1ehia1 1 KKRVALIFGGNSSEHDVSKRSAQN------------------FYNAIEATGKYEIIVFAIAQNGFFLDTESSKKI--LAL 60 (132)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHH------------------HHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHH--HTT
T ss_pred CCEEEEEeCcCcchhHHHHHHHHH------------------HHHhhhccCceeEEEEEEcCCceEEcccchhhh--hhc
Confidence 579999999999999999999977 4566654422555554433333221100 0000 001
Q ss_pred CCHHHHH-----------------HHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHh
Q 010065 134 LDGDAVI-----------------SFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALE 185 (519)
Q Consensus 134 ~d~~~l~-----------------~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~ 185 (519)
.+...+. ..-...++|+||| .+||+.+|++ ||.+|+||+|++..+++++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lHG~~GEDG~iQgl---le~~~iPy~G~~~~aSAla 131 (132)
T d1ehia1 61 EDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGL---FKLLDKPYVGAPLRGHAVS 131 (132)
T ss_dssp CCHHHHHHHHHTSCCTTCTTCTTGGGGTTCCCSEEEEECCSTTTSSSHHHHH---HHHTTCCBSSCCHHHHHHH
T ss_pred cccccccccccccccccccccchhhhhhccCCCEEEEccCCCCccchHHHHH---HHHcCCCccCCCHHHHHhc
Confidence 1111111 1112236899999 3899998888 9999999999999999875
|
| >d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: Prokaryotic glutathione synthetase, C-domain species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=3.4e-10 Score=102.08 Aligned_cols=173 Identities=16% Similarity=0.251 Sum_probs=111.1
Q ss_pred CCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC---cEE
Q 010065 202 TAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG---EEA 278 (519)
Q Consensus 202 ~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G---~E~ 278 (519)
+|++.+..+.+++.++.++.| |+|+||..|++++||.++.+.+............ .....+++|+|++. .++
T Consensus 13 ~P~Tlit~~~~~~~~f~~~~g-~vV~Kpl~gs~G~gv~~~~~~~~~~~~~~~~~~~----~~~~~~~~q~~~~~~~~~d~ 87 (192)
T d1gsaa2 13 TPETLVTRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE----HGTRYCMAQNYLPAIKDGDK 87 (192)
T ss_dssp SCCEEEESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT----TTTSCEEEEECCGGGGGCEE
T ss_pred CCCeEEECCHHHHHHHHHHcC-CeEEEEcCCCeEEEEEEeecCchhhhHHHHHHHh----cCccccccccccccccCcee
Confidence 799999999999999999987 9999999999999999997554332222222111 24467899999974 577
Q ss_pred EEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEE
Q 010065 279 SFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLM 358 (519)
Q Consensus 279 sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~ 358 (519)
.+.++ +|+ ++.. ..+....-.++....+.|+....++ ++++..+..... .+++..+|+.|.| ||++
T Consensus 88 Rv~vv-~~~-~~~a-~~r~~~~~~~~~~n~~~Gg~~~~~~---~~~~~~~~a~~~-----~~~l~~~gl~~~g---VDii 153 (192)
T d1gsaa2 88 RVLVV-DGE-PVPY-CLARIPQGGETRGNLAAGGRGEPRP---LTESDWKIARQI-----GPTLKEKGLIFVG---LDII 153 (192)
T ss_dssp EEEEE-TTE-ECSE-EEEEECCSSCSCCCGGGTCEEEEEE---CCHHHHHHHHHH-----HHHHHHTTCCEEE---EEEE
T ss_pred EEEEE-CCc-ceEE-EEEecccCCcchhhhhccCcceeec---ccHHHHHHHHHH-----HHHHHhhcCceEE---EEee
Confidence 77655 444 2211 1121111122234455555444443 555544333332 3566778887656 9987
Q ss_pred EEcCCCceEEEEEeCC-CCCCchHHHHHHhCCCHHHHHHHHHhC
Q 010065 359 IEKKSGLPKLIEYNVR-FGDPECQVLMVRLESDLAEVLLAACRG 401 (519)
Q Consensus 359 ~~~~g~~~~viEiN~R-~G~~~~~~~~~~~G~d~~~~~i~~~~g 401 (519)
+ .|++|||+- |++ ...+...+|+|+.+.+++.+..
T Consensus 154 ----~--~~~~EiNv~s~~g--~~~l~~~~g~~ia~~ivd~l~~ 189 (192)
T d1gsaa2 154 ----G--DRLTEINVTSPTC--IREIEAEFPVSITGMLMDAIEA 189 (192)
T ss_dssp ----T--TEEEEEECSSCCC--HHHHHHHSSCCHHHHHHHHHHH
T ss_pred ----C--CeEEEEEcCCcHH--HHHHHHHHCCCHHHHHHHHHHH
Confidence 3 378999965 333 2346666799999999987653
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=4.5e-11 Score=92.19 Aligned_cols=88 Identities=35% Similarity=0.507 Sum_probs=66.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
|||||+|+|+|||+++|+|.++ . ..+++.|+|+++.... .. .+. +.+..++.+.++|.|++|+|.++..+
T Consensus 1 MkVLviGsGgREHAia~~l~~s-~-~~v~~~pGN~G~~~~~--~~---~~~---~~~~~~~~~~~idlviIGPE~pL~~G 70 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQ-G-YEVHFYPGNAGTKRDG--TN---HPY---EGEKTLKAIPEEDIVIPGSEEFLVEG 70 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHT-T-CEEEEEECCTTGGGTS--EE---CCC---CTHHHHHTSCSSCEECCSSGGGTCC-
T ss_pred CEEEEECCCHHHHHHHHHHhcC-C-CeEEEecCCccccccc--ee---ccc---hhhHHHHHhccceeEEEChHHHHHHH
Confidence 7999999999999999999987 4 4677889999876543 21 222 23556778889999999999999888
Q ss_pred HHHHHHHCCCCeeCCcHHHHHH
Q 010065 163 LANKLVKAGIPTFGPSSEAAAL 184 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~ 184 (519)
+++.+ .+++||+.+++.+
T Consensus 71 i~D~~----~~vfGP~k~aA~l 88 (90)
T d1vkza2 71 VSNWR----SNVFGPVKEVARL 88 (90)
T ss_dssp ----C----TTBSSCCHHHHHH
T ss_pred HHHhC----CcccCcCHHHHhc
Confidence 87755 4589999988875
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=1.9e-09 Score=87.18 Aligned_cols=103 Identities=22% Similarity=0.361 Sum_probs=81.9
Q ss_pred CccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHHcC
Q 010065 81 QRVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRKWS 147 (519)
Q Consensus 81 ~~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~~~ 147 (519)
+++||||||+|.. ....+++|++. |+++++++++ |.+... +.++.+ ++.+-..+.+.+++++++
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~-g~~~IliN~N-PeTVstd~d~aD~l-Yfeplt~e~v~~Ii~~E~ 79 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRED-GYETIMVNCN-PETVSTDYDTSDRL-YFEPVTLEDVLEIVRIEK 79 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT-TCEEEEECCC-TTSSTTSTTSSSEE-ECCCCSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhc-CCeEEEEecC-hhhhhcChhhcCce-EEccCCHHHHHHHHHHhC
Confidence 4689999999942 14568888887 9999998654 333222 234555 788889999999999999
Q ss_pred CcEEEE--CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCH
Q 010065 148 VGLVVV--GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSK 188 (519)
Q Consensus 148 id~Vi~--g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK 188 (519)
+|+|++ |+..++ .++..|++.|++++|.+++++..+.|+
T Consensus 80 p~~ii~~~GGQtal--nla~~L~~~gv~iLGt~~~~Id~aEDR 120 (121)
T d1a9xa4 80 PKGVIVQYGGQTPL--KLARALEAAGVPVIGTSPDAIDRAEDR 120 (121)
T ss_dssp CSEEECSSSTHHHH--TTHHHHHHTTCCBCSSCHHHHHHHHSH
T ss_pred CCEEEeehhhhhHH--HHHHHHHHcCCcEECCCHHHHHHHHCc
Confidence 999999 677765 467789999999999999999999886
|
| >d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=4.4e-07 Score=83.97 Aligned_cols=99 Identities=28% Similarity=0.337 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC-CEEEEeCCCCCC----CcEEEeCCHHHHHHHHHHHHhhccC--
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA-PIVVKADGLAAG----KGVIVAMTLEEAYEAVDSMLLKNAF-- 260 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~-P~VvKP~~g~gs----~GV~~v~~~~el~~a~~~~~~~~~~-- 260 (519)
-+..|++|+++|||+|++..+++.+++.++++++|| |+|+|..-..++ -||.++.+.+|..++..+++.....
T Consensus 5 E~eaK~lL~~yGIpvp~~~~a~s~~ea~~~a~~iG~~pvVlKaq~~~~hk~~~GGV~~~~~~~e~~~~a~~~~~~~~~~~ 84 (238)
T d2nu7b2 5 EYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTY 84 (238)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCT
T ss_pred HHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHhCCCcEEEEEeecccccccceEEEeccccHHHHHHHHHHhCcceeee
Confidence 567899999999999999999999999999999995 999997422222 3899999999998888887632110
Q ss_pred -----CCCCCcEEEEeccCC-cEEEEEEEEeC
Q 010065 261 -----GSAGCRVIIEEFLEG-EEASFFALVDG 286 (519)
Q Consensus 261 -----~~~~~~~lvEe~I~G-~E~sv~~l~dg 286 (519)
+..-..++||+.+++ +|+-+.+..|.
T Consensus 85 ~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~ 116 (238)
T d2nu7b2 85 QTDANGQPVNQILVEAATDIAKELYLGAVVDR 116 (238)
T ss_dssp TSCTTCEECCCEEEEECCCEEEEEEEEEEEET
T ss_pred ccccCCcccceeeecceeecccceEEEEEEec
Confidence 001246999999996 99999988865
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=1.2e-07 Score=77.48 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=74.3
Q ss_pred CccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHHcC
Q 010065 81 QRVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRKWS 147 (519)
Q Consensus 81 ~~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~~~ 147 (519)
+.+||||||+|.. ....+++|++. |+++++++++ |.+... +.++.+ ++.+-+.+.+.+++++++
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~-g~~~iliN~N-P~TVstd~d~aD~l-YfePlt~e~v~~Ii~~E~ 82 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREE-GYRVINVNSN-PATIMTDPEMADAT-YIEPIHWEVVRKIIEKER 82 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH-TCEEEEECSC-TTCGGGCGGGSSEE-ECSCCCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHc-CCeEEEecCc-hHhhhcChhhccee-eeecCCHHHHHHHHHHhC
Confidence 4689999999942 14568888887 9999998654 333222 234555 788999999999999999
Q ss_pred CcEEEE--CCChhhHHHHHHH------HHHCCCCeeCCcHHHHHHh
Q 010065 148 VGLVVV--GPEAPLVSGLANK------LVKAGIPTFGPSSEAAALE 185 (519)
Q Consensus 148 id~Vi~--g~E~~~~~~~a~~------le~~gip~~g~~~~~~~~~ 185 (519)
+|+|++ |+..++. ++.. |+++|++++|.+++++..+
T Consensus 83 pd~il~~~GGQtaln--la~~L~~~giL~~~~v~iLGt~~~sId~a 126 (127)
T d1a9xa3 83 PDAVLPTMGGQTALN--CALELERQGVLEEFGVTMIGATADAIDKA 126 (127)
T ss_dssp CSEEECSSSHHHHHH--HHHHHHHTTHHHHHTCEECSSCHHHHHHH
T ss_pred cCCeEEEeeeehHhH--HHHHHHHcCcHHhcCCeEECCCHHHHHHh
Confidence 999998 5666552 2222 5677899999999998764
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=5.5e-07 Score=72.61 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=75.9
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
...||+|||+|+...-++.+.++. |+++++++++... ....++ ..+ ..+..|.+.+.+++.++++|+|....|.--
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~l-G~~v~v~d~~~~~PA~~va~-~~i-~~~~~d~~~l~~~~~~~~~DviT~E~EnI~ 86 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRL-GVEVIAVDRYADAPAMHVAH-RSH-VINMLDGDALRRVVELEKPHYIVPEIEAIA 86 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTT-TCEEEEEESSTTCGGGGGSS-EEE-ECCTTCHHHHHHHHHHHCCSEEEECSSCSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHC-CCEEEEEcCCCCCchhhcCC-eEE-ECCCCCHHHHHHHHHhhCCceEEEEecCcC
Confidence 356899999997665566665544 9999999877332 232322 233 568889999999999999999988878765
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhc
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEG 186 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~ 186 (519)
. ...+.+|+.|+++. |+++++++|+
T Consensus 87 ~-~~L~~le~~g~~v~-Ps~~al~it~ 111 (111)
T d1kjqa2 87 T-DMLIQLEEEGLNVV-PCARATKLTM 111 (111)
T ss_dssp H-HHHHHHHHTTCEES-SCHHHHHHHH
T ss_pred H-HHHHHHHHCCCeEC-CCHHHHHhhC
Confidence 5 34566899999987 9999999875
|
| >d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.33 E-value=2.2e-06 Score=79.50 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC-CEEEEeC--CCC-C--------CCcEEEeCCHHHHHHHHHHH
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA-PIVVKAD--GLA-A--------GKGVIVAMTLEEAYEAVDSM 254 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~-P~VvKP~--~g~-g--------s~GV~~v~~~~el~~a~~~~ 254 (519)
+-+..|++|+++|||+|++.++++.+++.++++++|| |+|+|+. .+. | .-||..+.|.+|+.++.+.+
T Consensus 5 ~E~eaK~lL~~yGIpvp~~~~a~s~~ea~~~a~~ig~~~vVlK~qv~~g~r~~~~~~k~~~GgV~~~~~~ee~~~~a~~~ 84 (246)
T d1eucb2 5 QEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 84 (246)
T ss_dssp CHHHHHHHHHTTTCCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCCTTCEETTSCBCSEEEESCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHHhCCCeEEEEEeeccccccccccccCCcceEEEecChhHHHHHhhhh
Confidence 3788999999999999999999999999999999995 8999983 111 1 14788899999999988776
Q ss_pred HhhccCC-------CCCCcEEEEeccCC-cEEEEEEEEeC
Q 010065 255 LLKNAFG-------SAGCRVIIEEFLEG-EEASFFALVDG 286 (519)
Q Consensus 255 ~~~~~~~-------~~~~~~lvEe~I~G-~E~sv~~l~dg 286 (519)
....... ..-..+++|+.+++ .|+-+.+..|-
T Consensus 85 ~~~~~~~~~~~~~~~~v~~vlve~~~~~~~E~~vg~~~D~ 124 (246)
T d1eucb2 85 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 124 (246)
T ss_dssp TTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEEG
T ss_pred hcchhhhhhccccccccccceehhcccccceeeeeeeecc
Confidence 5321100 01356899999996 99999988763
|
| >d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Thermococcus kodakaraensis [TaxId: 311400]
Probab=98.30 E-value=1.8e-06 Score=75.04 Aligned_cols=164 Identities=16% Similarity=0.121 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEE
Q 010065 190 FMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVII 269 (519)
Q Consensus 190 ~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lv 269 (519)
+.+++|+++|||.|+.. . ++++ +.+-|++||-....|++|-+++.|.++..... ...+++.|
T Consensus 2 l~~k~Le~AGip~Pk~~--~-Pedi-----~~d~~ViVK~~gAkggrGyFia~~~e~~~~~~----------~~~e~~~I 63 (213)
T d2pbza2 2 LQDKALEGAGIPRVEVV--E-PEDA-----KPDELYFVRIEGPRGGSGHFIVEGSELEERLS----------TLEEPYRV 63 (213)
T ss_dssp HHHHHHHHHTCCBCCBC--C-SCCC-----CSSCCEEEECCC------------EECSCCCC--------------CCEE
T ss_pred hhHHHHHhCCCCCCccc--C-cccc-----CCCceEEEEeccccCcceEEEEcCHHHHHhhh----------hcccceEE
Confidence 46789999999999733 2 4432 13679999999888999999998855432111 12367899
Q ss_pred EeccCCcEEEEEEEEe--CCeeEEeccccccccccCC----CCCC-CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 010065 270 EEFLEGEEASFFALVD--GENAIPLESAQDHKRVGDG----DTGP-NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGM 342 (519)
Q Consensus 270 Ee~I~G~E~sv~~l~d--g~~~~~~~~~~~~~~~~~~----~~~~-~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~ 342 (519)
||||-|.-+.+..+.+ .+++-.++.-+++.. .|+ ..+. ....+|+ .|+. +-+.+.+++.+++.+.+...-
T Consensus 64 eEyv~G~~~~~~yFySpi~~~lEllg~DrR~~~-~dg~~r~pa~~~~~~v~Gn-~p~v-iRESLL~~vf~~ge~fV~a~k 140 (213)
T d2pbza2 64 ERFIPGVYLYVHFFYSPILERLELLGVDERVLI-ADGNARWPVKPLPYTIVGN-RAIA-LRESLLPQLYDYGLAFVRTMR 140 (213)
T ss_dssp EECCCSCEEEEEEEEETTTTEEEEEEEEEEEET-TCSSSSSCCSCCCCCEEEE-EECE-ECGGGHHHHHHHHHHHHHHHH
T ss_pred EEEeccceeeeeeeccccccceeeEeeeeeeec-ccccccccccCCCeEEEcC-ccce-ehHHHHHHHHHHHHHHHHHHH
Confidence 9999998888887753 122322332222211 121 1111 2222343 3776 788888888888776554444
Q ss_pred HHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCC
Q 010065 343 SAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGD 377 (519)
Q Consensus 343 ~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~ 377 (519)
....-...|++.+|..+|. ++++.|+.+|.++
T Consensus 141 ~l~~pG~iGPFcLq~~~d~---~~~vfevS~RI~g 172 (213)
T d2pbza2 141 ELEPPGVIGPFALHFAYDG---SFKAIGIASRIDG 172 (213)
T ss_dssp HHSTTCCCSEEEEEEECSS---SCEEEEEESSBCS
T ss_pred HhcCCCccccceEEEEEcC---CEEEEEEeeeecC
Confidence 4443445599999998864 3899999999844
|
| >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=97.46 E-value=5.9e-05 Score=59.99 Aligned_cols=101 Identities=22% Similarity=0.194 Sum_probs=70.6
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CCCC--cCCCC-CccccC---CCCCCHHHHHHHHHHcCCcEEEEC-
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NAGI--SNSGD-ATCIPD---LDVLDGDAVISFCRKWSVGLVVVG- 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~~~--~~~~~-~~~v~~---~d~~d~~~l~~~~~~~~id~Vi~g- 154 (519)
+||||-.-|--...+.+..++. |++++.+... +... ...++ ...+.. -...|.+.+++++++.+.|+|.||
T Consensus 3 kkvLIANRGEiA~Ri~ra~~el-gi~tvav~s~~D~~s~~~~~ad~~~~ig~~~~~sYln~~~Ii~~A~~~~~daihPGy 81 (114)
T d1ulza2 3 NKVLVANRGEIAVRIIRACKEL-GIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQRIINLALEVGADAIHPGY 81 (114)
T ss_dssp SSEEECCCHHHHHHHHHHHHHH-TCCEEEEECGGGTTCHHHHHSSEEEECCSSTTHHHHCHHHHHHHHHHTTCCEEECCS
T ss_pred ceeeEecCCHHHHHHHHHHHHh-cCCeEEEecchhhcCcchhhcceeeecCCChhhhhhcHHHHHHHHHHhCCCeEecch
Confidence 5788888885555567776665 9999888643 2111 11111 111100 023368999999999999999995
Q ss_pred ---CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcC
Q 010065 155 ---PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGS 187 (519)
Q Consensus 155 ---~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~d 187 (519)
+|+. .+++.++..|+-++||++++++.+-|
T Consensus 82 GFLSEna---~Fa~~~~~~gi~FIGP~~~~i~~mGD 114 (114)
T d1ulza2 82 GFLAENA---EFAKMCEEAGITFIGPHWKVIELMGD 114 (114)
T ss_dssp STTTTCH---HHHHHHHHTTCEESSSCHHHHHHHHS
T ss_pred hhhhhHH---HHHHHHHHCCCEEECcCHHHHHHhCC
Confidence 7887 46778999999999999999987655
|
| >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.0002 Score=56.76 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=69.7
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-C--cCCCCCcccc------CCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-I--SNSGDATCIP------DLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~--~~~~~~~~v~------~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+||||-.-|--...+.++.++. |++++.+..+.+. . ...++ +.+. .-...|.+.+++++++.+.|+|.|
T Consensus 3 ~kvLIANRGeiA~Ri~ra~~el-gi~tvavys~~D~~~~h~~~ad-e~v~lg~~~~~~sYl~~~~Ii~~A~~~~~dAiHP 80 (114)
T d2j9ga2 3 DKIVIANRGEIALRILRACKEL-GIKTVAVHSSADRDLKHVLLAD-ETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHP 80 (114)
T ss_dssp SEEEECCCHHHHHHHHHHHHHH-TCEEEEEEEGGGTTCHHHHHSS-EEEEEECSSGGGTTTCHHHHHHHHHHHTCSEEEC
T ss_pred ceeeEecCCHHHHHHHHHHHHh-CCceEEEeccccccccceecCC-ceeecCCCchhhhhcCHHHHHHHHHHhCCceeec
Confidence 5788888885555567777666 9999888543211 1 11111 1110 124567999999999999999999
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHh
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAAALE 185 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~ 185 (519)
| +|+. .+++.+++.|+-++||++++++.+
T Consensus 81 GyGFLSEn~---~Fa~~~~~agi~FIGP~~~~i~~m 113 (114)
T d2j9ga2 81 GYGFLSENA---NFAEQVERSGFIFIGPKAETIRLM 113 (114)
T ss_dssp CSSTTTTCH---HHHHHHHHTTCEESSCCHHHHHHH
T ss_pred chhhhhhhH---HHHHHHHHCCCEEECcCHHHHHHc
Confidence 5 6887 467779999999999999998753
|
| >d1kjqa1 b.84.2.1 (A:319-392) Glycinamide ribonucleotide transformylase PurT, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, C-domain species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00049 Score=50.03 Aligned_cols=57 Identities=23% Similarity=0.238 Sum_probs=46.3
Q ss_pred ccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC
Q 010065 434 EIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG 498 (519)
Q Consensus 434 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g 498 (519)
...+++++.. +++.++++|... ...+.|+|++++.|+|.++|+++|.++.+.|+++|
T Consensus 18 ~~~gl~~al~--p~~~~hlyGK~~------~~~~RkMGhvt~~~~~~~~a~~~A~~~~~~i~V~g 74 (74)
T d1kjqa1 18 TFDNVQNAVG--ADLQIRLFGKPE------IDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG 74 (74)
T ss_dssp EEECGGGSCB--TTEEEEECCCCC------EEEECCCEEEEEECSSHHHHHHHHHHHHHHCEEEC
T ss_pred cccCHHHHhC--CCCEEEEcCCCC------CCCCcceEEEEEecCCHHHHHHHHHHHHhccEecC
Confidence 4677888764 678888776532 23457899999999999999999999999999876
|
| >d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Acetyl-CoA carboxylase, BC-N subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.0024 Score=53.77 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=63.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcE---------EEEe--cC---CCCCcCCCC-Ccccc----CCCCCCHHHHHHH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDA---------VFCA--PG---NAGISNSGD-ATCIP----DLDVLDGDAVISF 142 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~---------v~~~--~~---~~~~~~~~~-~~~v~----~~d~~d~~~l~~~ 142 (519)
-+||||-.-|-....+++.+++. |+++ +.+. .+ +......++ .-.+. .-...|.+.|+++
T Consensus 46 ikkvLIANRGEIA~Ri~rt~rel-gi~t~~~~~~~~~v~Va~~~d~D~~s~~v~~aD~~v~l~g~~~~~sYLn~~~II~~ 124 (170)
T d1w96a2 46 ISKILIANNGIAAVKEIRSVRKW-AYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDI 124 (170)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHH-HHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHH
T ss_pred cceeeeecCcHHHHHHHHHHHHh-cchhcccccccceeEEEecCccccccchhhhhhhhhccCCCCccchhhhHHHHHHH
Confidence 47899988885544556666554 5543 3332 11 111111111 11110 1145679999999
Q ss_pred HHHcCCcEEEEC----CChhhHHHHHHHHHHC--CCCeeCCcHHHHHH
Q 010065 143 CRKWSVGLVVVG----PEAPLVSGLANKLVKA--GIPTFGPSSEAAAL 184 (519)
Q Consensus 143 ~~~~~id~Vi~g----~E~~~~~~~a~~le~~--gip~~g~~~~~~~~ 184 (519)
+++.++|+|.|| +|+.. +++.++.. |+-++||++++++.
T Consensus 125 A~~~~~DAIHPGYGFLSEn~~---FA~~~~~a~~giiFIGPs~~~i~~ 169 (170)
T d1w96a2 125 AERADVDAVWAGWGHASENPL---LPEKLSQSKRKVIFIGPPGNAMRS 169 (170)
T ss_dssp HHHTTCSEEECCSSTTTTCTH---HHHHHHHSTTCCEESSCCHHHHHH
T ss_pred HHhcCCCEEEechhhhhhCHH---HHHHHHHhcCCCEEECcCHHHHHh
Confidence 999999999996 68874 56668765 99999999998864
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.045 Score=41.18 Aligned_cols=85 Identities=16% Similarity=0.083 Sum_probs=49.2
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC-CC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC---C
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA-GI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG---P 155 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~-~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g---~ 155 (519)
+.++|+|+|.|.....+++.|.+. |.++.+.+.... .. ........+ .....+.+.+ .++|.|+.. .
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~-g~~v~~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~d~vi~SPGi~ 75 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTPPGLDKLPEAVER-HTGSLNDEWL------MAADLIVASPGIA 75 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT-TCCCEEEESSSSCTTGGGSCTTSCE-EESBCCHHHH------HHCSEEEECTTSC
T ss_pred CCCEEEEEeECHHHHHHHHHHHHC-CCEEEEeeCCcCchhHHHHhhccce-eecccchhhh------ccCCEEEECCCCC
Confidence 467899999997666788888877 899888875422 11 111110101 1112222222 257888873 2
Q ss_pred ChhhHHHHHHHHHHCCCCeeC
Q 010065 156 EAPLVSGLANKLVKAGIPTFG 176 (519)
Q Consensus 156 E~~~~~~~a~~le~~gip~~g 176 (519)
.+. .+...+.+.|+|++|
T Consensus 76 ~~~---~~~~~a~~~gi~iiG 93 (93)
T d2jfga1 76 LAH---PSLSAAADAGIEIVG 93 (93)
T ss_dssp TTS---HHHHHHHHTTCEEEC
T ss_pred CCC---HHHHHHHHcCCCeEC
Confidence 222 234447788999886
|
| >d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: Lysine biosynthesis enzyme LysX, N-terminal domain domain: Lysine biosynthesis enzyme LysX, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.89 E-value=0.071 Score=39.69 Aligned_cols=75 Identities=15% Similarity=-0.005 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE-CCChhhHHHHHHHHHHCCC
Q 010065 94 EHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV-GPEAPLVSGLANKLVKAGI 172 (519)
Q Consensus 94 ~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~-g~E~~~~~~~a~~le~~gi 172 (519)
+..+..++.+. |++...+++...... ++....+ -..+|+|++ ..-...-..++..||.+|+
T Consensus 13 Ek~L~~a~~~r-G~~~~~id~~~~~~~----------l~~~~~~-------~~~~D~Vi~R~~s~~~~~~v~~~lE~~Gv 74 (88)
T d1uc8a1 13 ERMLFERAEAL-GLPYKKVYVPALPMV----------LGERPKE-------LEGVTVALERCVSQSRGLAAARYLTALGI 74 (88)
T ss_dssp HHHHHHHHHHH-TCCEEEEEGGGCCEE----------TTBCCGG-------GTTCCEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHC-CCeEEEEehhhcEEE----------ccCCCCc-------cCCCCEEEEeccccchHHHHHHHHHHCCC
Confidence 45677777777 999998876532211 1111110 135899999 3333333357888999999
Q ss_pred CeeCCcHHHHHHhcC
Q 010065 173 PTFGPSSEAAALEGS 187 (519)
Q Consensus 173 p~~g~~~~~~~~~~d 187 (519)
|++ +++.++..|.|
T Consensus 75 ~v~-Ns~~aI~~c~D 88 (88)
T d1uc8a1 75 PVV-NRPEVIEACGD 88 (88)
T ss_dssp CEE-SCHHHHHHHHB
T ss_pred cEe-ccHHHHHhhCC
Confidence 999 99999999876
|
| >d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.046 Score=43.00 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=40.2
Q ss_pred cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccccc
Q 010065 466 TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 466 ~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~~~ 517 (519)
.+..++.+|+.|.|+++|++++.++++...+.|. +.+.=+.++.|.+.++.|
T Consensus 51 YDsmiAKlI~~g~~R~~Ai~~l~~aL~e~~I~Gv~TN~~~l~~il~~~~f~~g~~~T 107 (116)
T d2j9ga1 51 YDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNI 107 (116)
T ss_dssp SCSEEEEEEEEESSHHHHHHHHHHHHHHCEEESSCCSHHHHHHHHTCHHHHHCCCCT
T ss_pred cchHHHHHhhcCCCHHHHHHHHHHHHHhccccCcCccHHHHHHHhCChhhccCCcee
Confidence 4566789999999999999999999999999993 344444456665555554
|
| >d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/glutamate racemase family: Aspartate/glutamate racemase domain: Glutamate racemase species: Aquifex pyrophilus [TaxId: 2714]
Probab=92.76 E-value=0.14 Score=39.18 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=53.2
Q ss_pred cEEEEEeCChhHHHHHHHHHhcC-CCcEEEEecC-CCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 83 VVVLVIGGGGREHALCYALKRSH-SCDAVFCAPG-NAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~-g~~~v~~~~~-~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
|||.|+.+|--...+.+.+++.. +.+.+++.+. +.+... ...+.+. .-...+.++..+.++|.++..+.....
T Consensus 1 mkIgifDSGiGGLtVl~~l~~~lP~~~~iY~~D~a~~PYG~-ks~~~I~----~~~~~~~~~l~~~~~~~iViACNTaS~ 75 (105)
T d1b74a1 1 MKIGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGI-RSKDTII----RYSLECAGFLKDKGVDIIVVACNTASA 75 (105)
T ss_dssp CEEEEEESSSTHHHHHHHHHHHSSSCEEEEEECGGGCCGGG-SCHHHHH----HHHHHHHHHHHTTTCSEEEECCHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHHHCCCCCEEEEecCCCCCCCC-CCHHHHH----HHHHHHHHHHHHcCCCEEEEecCcHHH
Confidence 67999988844455677776653 6666666433 111110 0001110 002344556667799999998877765
Q ss_pred HHHHHHHHHCCCCeeCC
Q 010065 161 SGLANKLVKAGIPTFGP 177 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~ 177 (519)
..+...-+.+++|++|-
T Consensus 76 ~al~~lr~~~~~PiiGv 92 (105)
T d1b74a1 76 YALERLKKEINVPVFGV 92 (105)
T ss_dssp HHHHHHHHHSSSCEEES
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 55555556789999973
|
| >d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Acetyl-CoA carboxylase, BC-C subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.57 E-value=0.1 Score=40.99 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=39.7
Q ss_pred CCeEEEEEEecCCHHHHHHHHHHHhhccccCC-e-----eecccccccccccccccc
Q 010065 467 GGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-G-----FYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 467 ~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-~-----~~r~dig~~~~~~~~~~~ 517 (519)
+..++.||++|.|+++|++++.++++...+.| . +.++=+.++.|...++.|
T Consensus 53 DsmlAKlI~~g~~R~~Ai~rl~~aL~e~~I~G~v~TN~~fL~~iL~~~~F~~g~~~T 109 (116)
T d1w96a1 53 DSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITT 109 (116)
T ss_dssp SEEEEEEEEEESSHHHHHHHHHHHHHHHTTCC----CCHHHHHHHTSHHHHTTCCCT
T ss_pred ChHHHHHHHHhccHHHHHHHHHHHHHhceEeccccccHHHHHHHhCChhhccCCcch
Confidence 34578999999999999999999999999998 3 344555566666666555
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=0.058 Score=39.10 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=22.8
Q ss_pred cEEEEEeCChhHHHHHHHHHhc---CCCcEEEEecCC
Q 010065 83 VVVLVIGGGGREHALCYALKRS---HSCDAVFCAPGN 116 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~---~g~~~v~~~~~~ 116 (519)
++|.|+|+|+ ++|++..+ .|+++++++|+.
T Consensus 2 k~vgIlG~GQ----LgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQ----LGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSH----HHHHHHHHHGGGTEEEEEECTTS
T ss_pred CEEEEEcCCH----HHHHHHHHHHHcCCEEEEEcCCC
Confidence 7899999995 55555443 399999998764
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.31 E-value=0.17 Score=45.46 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=43.5
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
|||||+|++| ....++..|.+. |++++.++.. ..|..|.+.+.++++..++|.|+-.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~-g~~Vi~~~r~--------------~~D~~d~~~~~~~l~~~~~d~vih~ 59 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGK-NVEVIPTDVQ--------------DLDITNVLAVNKFFNEKKPNVVINC 59 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTS-SEEEEEECTT--------------TCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCEEEEeech--------------hccCCCHHHHHHHHHHcCCCEEEee
Confidence 7899999854 456678888766 8888766321 3467788888899999999999973
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.68 E-value=0.13 Score=40.93 Aligned_cols=89 Identities=13% Similarity=-0.039 Sum_probs=51.6
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
.+.+|+|+|+|....+++..+..+.+++.+.+-++++...... ..-++..+.+ .+.++.+ ..++.+++.--....
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~-I~Gi~V~~~~---~l~~~~~-~~i~iai~~i~~~~~ 76 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRP-VRGGVIEHVD---LLPQRVP-GRIEIALLTVPREAA 76 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE-ETTEEEEEGG---GHHHHST-TTCCEEEECSCHHHH
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE-ECCEEEecHH---HHHHHHh-hcccEEEEeCCHHHH
Confidence 3569999999976666666665555787776655554432110 0111112333 3334343 467777775444445
Q ss_pred HHHHHHHHHCCCCe
Q 010065 161 SGLANKLVKAGIPT 174 (519)
Q Consensus 161 ~~~a~~le~~gip~ 174 (519)
+.+.+.|.++|++-
T Consensus 77 ~~I~d~l~~~gIk~ 90 (126)
T d2dt5a2 77 QKAADLLVAAGIKG 90 (126)
T ss_dssp HHHHHHHHHHTCCE
T ss_pred HHHHHHHHHcCCCE
Confidence 66777788888773
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=90.30 E-value=0.41 Score=44.52 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=48.5
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCC----c-----CCCCCccccCCCCCCHHHHHHHHHHcCCcEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGI----S-----NSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~----~-----~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
|||||+|++| ....++..|.+. |++++.++.-..+. . .......+ ..|..|.+.+.+.++..++|.|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFV-EGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTTHHHHHHHHHTSCCEEE-ECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCCCcchhhHHHHHhhcCCCCEEE-EeecCCHHHHHHHHhccCCCEEE
Confidence 6899999886 356688888877 89988875321110 0 00112223 57889999999999999999999
Q ss_pred E
Q 010065 153 V 153 (519)
Q Consensus 153 ~ 153 (519)
-
T Consensus 79 H 79 (338)
T d1udca_ 79 H 79 (338)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Aquifex aeolicus [TaxId: 63363]
Probab=89.59 E-value=0.069 Score=42.37 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=30.9
Q ss_pred cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe
Q 010065 466 TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG 499 (519)
Q Consensus 466 ~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~ 499 (519)
.+..++.+|++|.|+++|++++.++++...+.|.
T Consensus 53 YDsmiAKlIv~g~~R~~Ai~rl~~aL~e~~I~Gv 86 (123)
T d1ulza1 53 YDSMIAKLITWAPTWDEAVERMRAALETYEITGV 86 (123)
T ss_dssp SCCEEEEEEEEESSHHHHHHHHHHHHHTCEECSS
T ss_pred hhHHHHHHHhhCccHHHHHHHHHHHHHHhccCCc
Confidence 4566789999999999999999999999999993
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.23 E-value=0.8 Score=36.15 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=26.7
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
|+|+|+|.|.....+++.|.+. |+++++++.+
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~-g~~v~vid~d 32 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK-GHDIVLIDID 32 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCCcceecCC
Confidence 6899999997777788888877 8998888644
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=87.91 E-value=0.44 Score=43.60 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=43.7
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+||||+|+.| ....++..|.+. |+.++.++.. . .+|..+.+.+.++.+..++|.|+.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~-g~~vi~~~~~----------~---~~~~~~~~~~~~~~~~~~~d~v~~ 60 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQR-GDVELVLRTR----------D---ELNLLDSRAVHDFFASERIDQVYL 60 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC-TTEEEECCCT----------T---TCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-cCEEEEecCc----------h---hccccCHHHHHHHHhhcCCCEEEE
Confidence 68999999886 356688888876 7877654211 1 346677888888888889999986
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=86.98 E-value=0.92 Score=42.01 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=49.9
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC-------CCCCccccCCCCCCHHHHHHHHHHcCCcEEE
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN-------SGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-------~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
+.|||||+|+.| ....++..|.+. |++++.++........ ......+ ..|..|.+.+.++.+...+|.|+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~-~~Dl~d~~~l~~~~~~~~~~~v~ 84 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQSE-IGDIRDQNKLLESIREFQPEIVF 84 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCSSSSCHHHHTTTTTTSEEE-ECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCccHHHHhhhhcccCCeEE-EeeccChHhhhhhhhhchhhhhh
Confidence 358999999776 455688888877 9988877643221111 0112222 56888999999999999999988
Q ss_pred E
Q 010065 153 V 153 (519)
Q Consensus 153 ~ 153 (519)
.
T Consensus 85 ~ 85 (356)
T d1rkxa_ 85 H 85 (356)
T ss_dssp E
T ss_pred h
Confidence 7
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.59 E-value=2.2 Score=32.86 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=46.7
Q ss_pred cEEEEEeCChh----HHHHHHHHHhcCCCcEEEEecCCCCC---cCCCCCcccc-CCCC-------CCHHHHHHHHHHcC
Q 010065 83 VVVLVIGGGGR----EHALCYALKRSHSCDAVFCAPGNAGI---SNSGDATCIP-DLDV-------LDGDAVISFCRKWS 147 (519)
Q Consensus 83 ~~vliiG~g~~----~~~l~~~l~~~~g~~~v~~~~~~~~~---~~~~~~~~v~-~~d~-------~d~~~l~~~~~~~~ 147 (519)
+.|.|+|++.. .+.+...|.+. |++++.+.|..... ....+-..++ ..|. .....+++-+.+.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~-g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~~~~~~~l~~~~~~g 80 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK-GFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEAG 80 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT-TCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHHTT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC-CCEEEEEccccccccCccccccchhccccceEEEEEeCHHHHHHHHHHHHhcC
Confidence 56889997632 35566677666 89877776652211 1111111110 1111 11333344444556
Q ss_pred CcEEEE--CCChhhHHHHHHHHHHCCCCeeCCc
Q 010065 148 VGLVVV--GPEAPLVSGLANKLVKAGIPTFGPS 178 (519)
Q Consensus 148 id~Vi~--g~E~~~~~~~a~~le~~gip~~g~~ 178 (519)
+..++. |.+.. .+.+.+++.|++++|++
T Consensus 81 ~k~v~~~~g~~~~---~~~~~a~~~gi~vigpn 110 (116)
T d1y81a1 81 FKKLWFQPGAESE---EIRRFLEKAGVEYSFGR 110 (116)
T ss_dssp CCEEEECTTSCCH---HHHHHHHHHTCEEECSC
T ss_pred CceEEeccchhhH---HHHHHHHHcCCEEEcCC
Confidence 666665 34433 34555777777777654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.40 E-value=0.8 Score=42.76 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=45.0
Q ss_pred CCccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCC-CcC-CCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 80 GQRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAG-ISN-SGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 80 ~~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.++|||||+|+.| ....++..|.+. |++++.++..... ... ....... ..|..+.+.+.+.. .++|.|+-
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~--~~~d~Vih 85 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHE-GHYVIASDWKKNEHMTEDMFCDEFH-LVDLRVMENCLKVT--EGVDHVFN 85 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCSSSCGGGTCSEEE-ECCTTSHHHHHHHH--TTCSEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEeCCCccchhhhcccCcEE-EeechhHHHHHHHh--hcCCeEee
Confidence 3578999999776 346678888877 8998877533211 111 1111112 46788888887765 36888885
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.33 E-value=0.11 Score=44.25 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=61.2
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCc-CCCCCccccC-C-CCCCHHHHHHHHHHcCCcEEEECCChh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGIS-NSGDATCIPD-L-DVLDGDAVISFCRKWSVGLVVVGPEAP 158 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~-~~~~~~~v~~-~-d~~d~~~l~~~~~~~~id~Vi~g~E~~ 158 (519)
|+||.|||.|......+..+....+++.+.+.+.+.... .......++. . -..|.+++ ++..++|+|+......
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l---l~~~~iD~v~I~tp~~ 77 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESL---LEDPEIDALYVPLPTS 77 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHH---HHCTTCCEEEECCCGG
T ss_pred CeEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHh---hhccccceeeecccch
Confidence 478999999865555566776665777765543322110 0000000100 0 12344444 4566899999865555
Q ss_pred hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCC
Q 010065 159 LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT 202 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~ 202 (519)
.-..++..+-+.|++++--.|-+... .+=..+.++.++.|+..
T Consensus 78 ~h~~~~~~~l~~g~~v~~EKP~~~~~-~e~~~l~~~~~~~~~~~ 120 (184)
T d1ydwa1 78 LHVEWAIKAAEKGKHILLEKPVAMNV-TEFDKIVDACEANGVQI 120 (184)
T ss_dssp GHHHHHHHHHTTTCEEEECSSCSSSH-HHHHHHHHHHHTTTCCE
T ss_pred hhcchhhhhhhccceeecccccccCH-HHHHHHHHHHHhhCCEE
Confidence 43345555667898876333222211 12223445566666654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=86.11 E-value=0.46 Score=36.59 Aligned_cols=85 Identities=13% Similarity=0.040 Sum_probs=49.5
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCC-C--CCcccc-CCCCCCHHHHHHHHHHcCCcEEEEC-
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNS-G--DATCIP-DLDVLDGDAVISFCRKWSVGLVVVG- 154 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~-~--~~~~v~-~~d~~d~~~l~~~~~~~~id~Vi~g- 154 (519)
+.++|||+|+|......++.|.+. |.+++++++.... .... . ...... .++..| + .+.+.|+..
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~-ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~d---l------~~~~lv~~at 80 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEA-GARLTVNALTFIPQFTVWANEGMLTLVEGPFDETL---L------DSCWLAIAAT 80 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHT-TBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGG---G------TTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCChHHHHHHhcCCceeeccCCCHHH---h------CCCcEEeecC
Confidence 357999999997655667777776 8888887654211 1000 0 001110 111111 1 256778875
Q ss_pred CChhhHHHHHHHHHHCCCCee
Q 010065 155 PEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~ 175 (519)
+...+...+.+.++..|+++.
T Consensus 81 ~d~~~n~~i~~~a~~~~ilVN 101 (113)
T d1pjqa1 81 DDDTVNQRVSDAAESRRIFCN 101 (113)
T ss_dssp SCHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEE
Confidence 444555567778888999874
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=85.73 E-value=0.92 Score=42.52 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=45.4
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEE-ecCCCCC--cCC---CCCcccc--CCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFC-APGNAGI--SNS---GDATCIP--DLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~-~~~~~~~--~~~---~~~~~v~--~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|||||+|+.| ....++..|.+. |++++.. +...... ... .....+. ..|..|.+.+.++.+..++|+|+-
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~-g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih 79 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKN-TQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHH-CSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence 6899999886 355678888877 8875543 3221111 100 0011111 468888999999999899999997
|
| >d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain species: Escherichia coli [TaxId: 562]
Probab=85.52 E-value=2.1 Score=30.45 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=34.3
Q ss_pred CCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhhccc
Q 010065 445 APSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEIN 495 (519)
Q Consensus 445 ~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~ 495 (519)
.+++.++++|.+. ..+..+|||...|+|.+++.+++..+.+.+.
T Consensus 21 ~p~~~~H~YGK~~-------RpgRKmGHitl~~~~~~~l~~~~~~l~~~L~ 64 (79)
T d3etja1 21 LPLVHLHWYDKEV-------RPGRKVGHLNLTDSDTSRLTATLEALIPLLP 64 (79)
T ss_dssp STTCEEEECCCCC-------CTTCEEEEEEEECSCHHHHHHHHHHHGGGSC
T ss_pred CCCcEEEecCCCC-------CCCCcEEEEEeecCCHHHHHHHHHHHHHhCC
Confidence 3678888887543 3445689999999999999999998877653
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=84.85 E-value=0.82 Score=37.94 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=47.1
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
+++||.|+|.|......+..+++..+++.+.+...+....... ... ...+.+.+ ..++|+|+...-...-
T Consensus 2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~--~~~---~~~~~~~~-----~~~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKT--PVF---DVADVDKH-----ADDVDVLFLCMGSATD 71 (170)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSS--CEE---EGGGGGGT-----TTTCSEEEECSCTTTH
T ss_pred CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccccc--ccc---cchhhhhh-----ccccceEEEeCCCccc
Confidence 3679999999965555677777766888776654443221111 111 01111111 1368988874322222
Q ss_pred HHHHHHHHHCCCCee
Q 010065 161 SGLANKLVKAGIPTF 175 (519)
Q Consensus 161 ~~~a~~le~~gip~~ 175 (519)
..++..+-+.|+.++
T Consensus 72 ~~~a~~aL~aG~~vv 86 (170)
T d1f06a1 72 IPEQAPKFAQFACTV 86 (170)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHCCCcEE
Confidence 245555666788866
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.05 E-value=1.7 Score=36.86 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=45.1
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc-CC-CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS-NS-GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~-~~-~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
++||+|+|+.| ....++..|.+. |+++..+..+..... .. .....+ ..|..|.+.+.+.++ +.|+|+.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~~~~~~~~~~~~~~~~-~gD~~d~~~l~~al~--~~d~vi~ 73 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRLPSEGPRPAHVV-VGDVLQAADVDKTVA--GQDAVIV 73 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGGSCSSSCCCSEEE-ESCTTSHHHHHHHHT--TCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEEcChhhcccccccccccc-cccccchhhHHHHhc--CCCEEEE
Confidence 57899999654 556778888877 898887764321111 11 122333 678889888877765 5788886
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=83.86 E-value=0.5 Score=38.95 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=52.8
Q ss_pred CCccEEEEEeCChhHHH-HHHHHHhcCCCcEEEEecCCCCCcCCCCCcccc-CCCCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 80 GQRVVVLVIGGGGREHA-LCYALKRSHSCDAVFCAPGNAGISNSGDATCIP-DLDVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 80 ~~~~~vliiG~g~~~~~-l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~-~~d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
.+|+||.|+|.|+.... +...+++....+.+.+...+........++... .......+.+++..+..++|+||...-.
T Consensus 2 ~kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpa 81 (157)
T d1nvmb1 2 NQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA 81 (157)
T ss_dssp CSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred CCCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCc
Confidence 46789999999965443 445666665667766654332211000011110 1122335666655555679999975433
Q ss_pred hhHHHHHHHH--HHCCCCeeCCcH
Q 010065 158 PLVSGLANKL--VKAGIPTFGPSS 179 (519)
Q Consensus 158 ~~~~~~a~~l--e~~gip~~g~~~ 179 (519)
+.-...+..+ .+.|+.++-.++
T Consensus 82 g~h~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 82 SAHVQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECST
T ss_pred hhHHHhHHHHHHHHcCCEEEEccc
Confidence 3211122223 456888876655
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.42 E-value=3.9 Score=32.44 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=53.3
Q ss_pred ccEEEEEeCCh----hHHHHHHHHHhcCCCcEEEEecCCCCC---cCCCCCcccc-CCCC-------CCHHHHHHHHHHc
Q 010065 82 RVVVLVIGGGG----REHALCYALKRSHSCDAVFCAPGNAGI---SNSGDATCIP-DLDV-------LDGDAVISFCRKW 146 (519)
Q Consensus 82 ~~~vliiG~g~----~~~~l~~~l~~~~g~~~v~~~~~~~~~---~~~~~~~~v~-~~d~-------~d~~~l~~~~~~~ 146 (519)
.+.|.|+|++. ..+.+...|.+. |++++.+.|..... ........++ .+|. .....+++-+.+.
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~-g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp~~~~~~~~~e~~~~ 97 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEH-GYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK 97 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHT-TCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHC-CCEEEEECCcccccCCCcccccccccCccceEEEEEeCHHHHHHHHHHHHHh
Confidence 46899999773 235667777766 99888887653211 1111111111 1111 1134445555556
Q ss_pred CCcEEEE--CCChhhHHHHHHHHHHCCCCeeCCc
Q 010065 147 SVGLVVV--GPEAPLVSGLANKLVKAGIPTFGPS 178 (519)
Q Consensus 147 ~id~Vi~--g~E~~~~~~~a~~le~~gip~~g~~ 178 (519)
++..++. |+++.. +.+.+++.|+.++|+.
T Consensus 98 g~k~v~~~~G~~~ee---~~~~a~~~gi~vig~~ 128 (139)
T d2d59a1 98 GAKVVWFQYNTYNRE---ASKKADEAGLIIVANR 128 (139)
T ss_dssp TCSEEEECTTCCCHH---HHHHHHHTTCEEEESC
T ss_pred CCCEEEEeccccCHH---HHHHHHHCCCEEEcCC
Confidence 7777776 555543 4556888899888764
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.84 E-value=1.6 Score=40.98 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=46.5
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecC----------CC---CCcC------------CCCCccccCCCCCCH
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPG----------NA---GISN------------SGDATCIPDLDVLDG 136 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~----------~~---~~~~------------~~~~~~v~~~d~~d~ 136 (519)
|||||+|+.| ....+++.|.+. |++++.+|.- .. .... ......+ ..|..|.
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~-g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~Dl~d~ 79 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELY-VGDICDF 79 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEE-ESCTTSH
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-cCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEE-EccCCCH
Confidence 7899999886 356688888877 9998887510 00 0000 0011222 4688888
Q ss_pred HHHHHHHHHcCCcEEEE
Q 010065 137 DAVISFCRKWSVGLVVV 153 (519)
Q Consensus 137 ~~l~~~~~~~~id~Vi~ 153 (519)
+.+.++.+..++|.|+-
T Consensus 80 ~~l~~~~~~~~~d~ViH 96 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVH 96 (393)
T ss_dssp HHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHhhcchheec
Confidence 88988888889999886
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=81.64 E-value=0.24 Score=41.22 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=45.1
Q ss_pred cEEEEEeCChhHHH-HHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHH
Q 010065 83 VVVLVIGGGGREHA-LCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVS 161 (519)
Q Consensus 83 ~~vliiG~g~~~~~-l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~ 161 (519)
+||.|+|.|..... ....+++..+++.++++++............. ..-..|.++++ +.++|+|+...-...-.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~ll----~~~iD~V~I~tp~~~H~ 76 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV-SATCTDYRDVL----QYGVDAVMIHAATDVHS 76 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC-CCCCSSTTGGG----GGCCSEEEECSCGGGHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc-ccccccHHHhc----ccccceecccccccccc
Confidence 68999999965422 34556656577766554431111110000001 00122333333 24799998854444433
Q ss_pred HHHHHHHHCCCCee
Q 010065 162 GLANKLVKAGIPTF 175 (519)
Q Consensus 162 ~~a~~le~~gip~~ 175 (519)
.++..+-+.|.+++
T Consensus 77 ~~~~~al~~gk~V~ 90 (167)
T d1xeaa1 77 TLAAFFLHLGIPTF 90 (167)
T ss_dssp HHHHHHHHTTCCEE
T ss_pred cccccccccccccc
Confidence 45555666788886
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.59 E-value=1.5 Score=40.11 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=47.2
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCC--CCcCCC----C-----Cc--cccCCCCCCHHHHHHHHHHcC
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNA--GISNSG----D-----AT--CIPDLDVLDGDAVISFCRKWS 147 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~--~~~~~~----~-----~~--~v~~~d~~d~~~l~~~~~~~~ 147 (519)
||++||+|+.| ....++..|.+. |++++.++.... ...... . .. .+...|..+.+.+....+..+
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~ 79 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGK-GYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK 79 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC-cCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence 58999999886 355688888887 999988864211 000000 0 00 011357788888888888889
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|.|+-
T Consensus 80 ~D~Vih 85 (339)
T d1n7ha_ 80 PDEVYN 85 (339)
T ss_dssp CSEEEE
T ss_pred cchhhh
Confidence 999987
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=80.45 E-value=2.2 Score=38.75 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=46.5
Q ss_pred EEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCC-CCc-------CCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 84 VVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNA-GIS-------NSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 84 ~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~-~~~-------~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
||||+|+.| ....++..|.+. |++++.++.-.. ... .......+ ..|..+.+.+.++.+..++|.|+-
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~-g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i-~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFV-HGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSTTHHHHHHHHHTTCCCEEE-ECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHC-cCEEEEEECCCcccchhHHHHhhccCCcEEE-EcccCCHHHHHHHHHhcCCceEEe
Confidence 799999886 355678888877 898887752111 100 01112223 568888999999998899999996
|