Citrus Sinensis ID: 010079

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MVAEMAQSPVESVAEVHNSLAQENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASEKKVDEAKLREMKKEEDRAKAREGMERKRKKEEAKVAKAALRAEKQRKEIIYGTYFFTITVLLAINLELI
ccccccccccHHHHHHccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccccccccccccccccccccHccccccccccccccEEEccccccccccccccccccccccccccHHccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
mvaemaqspvESVAEVHNSLAqengkldkgpvkdesiifgshggvgelvngkesnvsnanlpkdvgeewpeprvihnfyfirhrqyddpkirakidlTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKlrttnnarsggicsseEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQEsmgkkediqdqlmgsdldgvKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRqlsrdgrirnpdekplvvaetsvpsepeivakpnvkqskgdsksasqkdtlptQKVQKEAAKKetedtadfeipvvekpasekkvDEAKLREMKKEEDRAKAREGMERKRKKEEAKVAKAALRAEKQRKEIIYGTYFFTITVLLAINLELI
mvaemaqspveSVAEVHNSLAqengkldkgpvkDESIIFGSHGGVGELVNGKESNVSNANlpkdvgeewpepRVIHNFyfirhrqyddpkirakidltdreIQRRNQARMQLMDelrakrgvrgdLAAQlrslktegrqyksvmddkrkeMEPLHQalgklrttnnarsggicsseeELDDLIRSLQYRIQHeiiplseekqILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKElrkqrdegNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLwnnnkafrDDYEKRLLQSLDmrqlsrdgrirnpdekplvvaetsvpsepeivakpnvkqskgdsksasqkdtlptqkvqkeaakketedtadfeipvvekpasekkvdeaklremkkeedrakaregmerkrkkeeaKVAKAAlraekqrkeiiygtyFFTITVLLAINLELI
MVAEMAQSPVESVAEVHNSLAQENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASEKKVDEAKLREMKKEEDrakaregmerkrkkeeakvakaalraekQRKEIIYGTYFFTITVLLAINLELI
************************************IIFGSHGGV**********************EWPEPRVIHNFYFIRHRQYDDPKIRAKIDL*********************************************************************************LDDLIRSLQYRIQHEIIPLSEEKQILR*************************************************AVWAKISHLEGKVKAL*********************************EGNAYFFQYRALLNEAKAMSVK************EVEKYMTLWNNNKAFRDDYE******************************************************************************************************************************************KEIIYGTYFFTITVLLAINLE**
*************************************************************************VIHNFYFIRHRQYDDPKIRAKIDLTDREIQ*******************************************************************************************************************************************************************************************************DEGNAYFFQ********************************************************************************************************************************************************************************************YGTYFFTITVLLAINLELI
**************EVHNSLAQENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKP***********************************ADFEIPVVEKPASEKKVDEAKLR******************************LRAEKQRKEIIYGTYFFTITVLLAINLELI
*****************************************************************GEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTT******GICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAE*************************************************************************K**EDRAKAREGMER**********K*ALRAEKQRKEIIYGTYFFTITVLLAINLELI
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MVAEMAQSPVESVAEVHNSLAQENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSExxxxxxxxxxxxxxxxxxxxxAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIIYGTYFFTITVLLAINLELI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query518 2.2.26 [Sep-21-2011]
O23144612 Proton pump-interactor 1 yes no 0.891 0.754 0.516 1e-126
B3H4K7589 Proton pump-interactor 2 no no 0.853 0.750 0.347 2e-52
P0DKC0576 Proton pump-interactor 3B no no 0.777 0.699 0.345 1e-47
P0DKC1576 Proton pump-interactor 3A no no 0.777 0.699 0.345 1e-47
Q8VZN4439 Proton pump-interactor 4 no no 0.434 0.512 0.366 5e-32
>sp|O23144|PPI1_ARATH Proton pump-interactor 1 OS=Arabidopsis thaliana GN=PPI1 PE=1 SV=2 Back     alignment and function desciption
 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/488 (51%), Positives = 344/488 (70%), Gaps = 26/488 (5%)

Query: 4   EMAQSPVESVAEVHNSLAQENGKLDKGPVKDESIIFGSHGGVGELVNGKESN---VSNAN 60
           E+A +P E   E       +NGKLD+G   D  I FGS   VGEL    E N   V N++
Sbjct: 12  EVAPAPFEGKPE-------KNGKLDQGKGDDAPINFGS---VGELPKNAEENNNKVVNSD 61

Query: 61  LPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKR 120
            PK+  EEWP  + IH+FY +++R Y DPKI+AK+DL D+E+++ N+AR  ++D+LRAKR
Sbjct: 62  APKNAAEEWPVAKQIHSFYLVKYRSYADPKIKAKLDLADKELEKLNKARTGVLDKLRAKR 121

Query: 121 GVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTN--NARSGGICSSEEE 178
             R +L   L  LK+E + + ++ D+KRKEMEPL QALGKLR+ +  +AR   ICSSEEE
Sbjct: 122 AERSELFDLLDPLKSERKGFNTMFDEKRKEMEPLQQALGKLRSNDGGSARGPAICSSEEE 181

Query: 179 LDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQ 238
           L+ +I S QYRIQHE IPL+EEKQIL+EI+ LEGTR+KV+ANAAMRAKI+ESMG+K+DIQ
Sbjct: 182 LNSMIYSYQYRIQHESIPLTEEKQILKEIRLLEGTRDKVIANAAMRAKIKESMGQKDDIQ 241

Query: 239 DQ--LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 296
            Q  LMG+ LDGVKKE QA+ A+I+ L  K+KA  +EI  L+ E+  V+EKRDKA++NI 
Sbjct: 242 GQVKLMGAGLDGVKKERQAISARINELSEKLKATKDEITVLENELKTVSEKRDKAYSNIH 301

Query: 297 ELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDY 356
           +LR+QRDE N+ ++Q R +LN+A+ ++ +K++  L+ L+N+EVEK+++LW + K FR+DY
Sbjct: 302 DLRRQRDETNSEYYQNRTVLNKARDLAAQKNISELEALANAEVEKFISLWCSKKNFREDY 361

Query: 357 EKRLLQSLDMRQLSRDGRIRNPDEKPLVVAET----SVPSEPEIVAKPNVK-QSKGDSKS 411
           EKR+LQSLD RQLSRDGR+RNPDEKPL+  E     + PSE E+V K   K Q K +  S
Sbjct: 362 EKRILQSLDSRQLSRDGRMRNPDEKPLIAPEAAPSKATPSETEVVPKAKAKPQPKEEPVS 421

Query: 412 ASQKDTLPTQKVQ--KEAAK-KETEDTADFEIPVVEKPASEKK-VDEAKLREMKKEEDRA 467
           A + D    Q  +  K+A K K   D  D E+  + KP  E+K VD A  +EM+K+E+ A
Sbjct: 422 APKPDATVAQNTEKAKDAVKVKNVADDDDDEVYGLGKPQKEEKPVDAATAKEMRKQEEIA 481

Query: 468 KAREGMER 475
           KA++ MER
Sbjct: 482 KAKQAMER 489
Promotes AHA1 plasma membrane ATPase activity by binding to a site different from the 14-3-3 binding site.
Arabidopsis thaliana (taxid: 3702)
>sp|B3H4K7|PPI2_ARATH Proton pump-interactor 2 OS=Arabidopsis thaliana GN=PPI2 PE=2 SV=1 Back     alignment and function description
>sp|P0DKC0|PPI3B_ARATH Proton pump-interactor 3B OS=Arabidopsis thaliana GN=PPI3B PE=3 SV=1 Back     alignment and function description
>sp|P0DKC1|PPI3A_ARATH Proton pump-interactor 3A OS=Arabidopsis thaliana GN=PPI3A PE=3 SV=1 Back     alignment and function description
>sp|Q8VZN4|PPI4_ARATH Proton pump-interactor 4 OS=Arabidopsis thaliana GN=PPI4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
147857052536 hypothetical protein VITISV_007014 [Viti 0.963 0.930 0.581 1e-160
359493838 627 PREDICTED: uncharacterized protein LOC10 0.938 0.775 0.587 1e-158
224114940 619 predicted protein [Populus trichocarpa] 0.913 0.764 0.604 1e-157
224128300616 predicted protein [Populus trichocarpa] 0.913 0.767 0.593 1e-155
449447207 639 PREDICTED: proton pump-interactor 1-like 0.947 0.768 0.555 1e-150
255586536616 DNA double-strand break repair rad50 ATP 0.897 0.754 0.590 1e-149
302142999478 unnamed protein product [Vitis vinifera] 0.803 0.870 0.619 1e-144
356549720616 PREDICTED: uncharacterized protein LOC10 0.901 0.758 0.548 1e-143
356517130 665 PREDICTED: uncharacterized protein LOC10 0.895 0.697 0.553 1e-142
357452965609 hypothetical protein MTR_2g085330 [Medic 0.903 0.768 0.542 1e-135
>gi|147857052|emb|CAN81802.1| hypothetical protein VITISV_007014 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 306/526 (58%), Positives = 390/526 (74%), Gaps = 27/526 (5%)

Query: 4   EMAQSPVESVAEVHNSLAQ--ENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANL 61
           E A +PVE+  E  ++L    ENGKLD+GP   E I FGSHG   E V G+ +NVS+ N 
Sbjct: 9   EAAPAPVEAGTEAESALLHDKENGKLDQGPGVTEPIKFGSHGD--EPVKGEGNNVSD-NF 65

Query: 62  PKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRG 121
           PKDV +EWP P+ IH+FYF+++R YDDPKI+AK+D  D+EIQRRNQAR Q+ + LRAK+ 
Sbjct: 66  PKDVVDEWPAPKQIHSFYFVKYRSYDDPKIKAKLDQADKEIQRRNQARFQITEGLRAKKS 125

Query: 122 VRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNA---RSGGICSSEEE 178
            R  + +QL+SLK E  Q++ ++D KRKEMEPL  ALGKLR+TN+A   R G +CSSEEE
Sbjct: 126 DRAQMLSQLKSLKAEDEQFRMIVDGKRKEMEPLQHALGKLRSTNSANRERGGTLCSSEEE 185

Query: 179 LDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQ 238
           L+DLI+SL Y +QHE IPL+EEKQILREIKQLE TREKV+A AAMRAKIQ+S+G+KE IQ
Sbjct: 186 LNDLIQSLHYHMQHESIPLAEEKQILREIKQLEATREKVIAGAAMRAKIQDSLGQKEAIQ 245

Query: 239 DQ--LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 296
           DQ  L+G DLDGV+KE Q V AKI  L   +K +D EI++L +E+  V+EKRDKA+  ++
Sbjct: 246 DQVKLIGVDLDGVRKEKQVVMAKIKQLRDDLKGIDSEIDSLMEELKAVSEKRDKAYEGLQ 305

Query: 297 ELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDY 356
            LRKQRDEGNA+F+Q RALLN A+ ++ KKD++ L+ELS+SEVEK+M+LW++NKAFR+DY
Sbjct: 306 ALRKQRDEGNAHFYQNRALLNNARELAGKKDIKALEELSHSEVEKFMSLWSSNKAFREDY 365

Query: 357 EKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKD 416
           EKR+L SLD RQLSRDGR+RNPDEKPLVV E   PSE E VAK  VK+SK DSK   Q D
Sbjct: 366 EKRILPSLDSRQLSRDGRMRNPDEKPLVVLEAPTPSEXETVAKAPVKRSKEDSKPPPQHD 425

Query: 417 TLPTQKVQKEAAKKETEDTADFE---------IPVVEK----PASEKKVDEAKLREMKKE 463
           TLP+QKVQKEA  + T+     E         IP +EK    P+ + +VD AKL+EMK+E
Sbjct: 426 TLPSQKVQKEANDRATDSGITLERGDKEEKEIIPGLEKHQKGPSLDNEVDAAKLKEMKRE 485

Query: 464 EDRAKAREGMERKRKKEEAKVAKAALR----AEKQRKEIIYGTYFF 505
           E+ AKA+  +ERK+K  +   AKAA+R    AEK+ KEII   + F
Sbjct: 486 EEIAKAKLALERKKKLADKSAAKAAIRAQKEAEKKLKEIITSLFIF 531

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493838|ref|XP_002285016.2| PREDICTED: uncharacterized protein LOC100267528 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114940|ref|XP_002316898.1| predicted protein [Populus trichocarpa] gi|222859963|gb|EEE97510.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224128300|ref|XP_002329130.1| predicted protein [Populus trichocarpa] gi|222869799|gb|EEF06930.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449447207|ref|XP_004141360.1| PREDICTED: proton pump-interactor 1-like [Cucumis sativus] gi|449498721|ref|XP_004160615.1| PREDICTED: proton pump-interactor 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255586536|ref|XP_002533906.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] gi|223526139|gb|EEF28480.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142999|emb|CBI20294.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549720|ref|XP_003543239.1| PREDICTED: uncharacterized protein LOC100819875 [Glycine max] Back     alignment and taxonomy information
>gi|356517130|ref|XP_003527243.1| PREDICTED: uncharacterized protein LOC100793963 [Glycine max] Back     alignment and taxonomy information
>gi|357452965|ref|XP_003596759.1| hypothetical protein MTR_2g085330 [Medicago truncatula] gi|355485807|gb|AES67010.1| hypothetical protein MTR_2g085330 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
TAIR|locus:2124019612 PPI1 "proton pump interactor 1 0.851 0.720 0.526 7.9e-117
TAIR|locus:2087115589 PPI2 "proton pump interactor 2 0.803 0.706 0.341 1.7e-57
TAIR|locus:2037365 1364 AT1G20970 "AT1G20970" [Arabido 0.689 0.261 0.274 1.2e-37
TAIR|locus:2147366576 AT5G36690 "AT5G36690" [Arabido 0.546 0.491 0.344 8.5e-36
TAIR|locus:2149084576 AT5G36780 "AT5G36780" [Arabido 0.546 0.491 0.344 8.5e-36
TAIR|locus:2037059439 AT1G53110 "AT1G53110" [Arabido 0.411 0.485 0.327 1.1e-34
UNIPROTKB|E1C849 2054 CIT "Uncharacterized protein" 0.708 0.178 0.213 2.1e-08
UNIPROTKB|F1SP83603 IFT74 "Uncharacterized protein 0.592 0.509 0.225 2.6e-08
ZFIN|ZDB-GENE-050208-317 1422 tnks1bp1 "tankyrase 1 binding 0.696 0.253 0.187 6.3e-08
RGD|1359704600 Ift74 "intraflagellar transpor 0.588 0.508 0.227 9e-08
TAIR|locus:2124019 PPI1 "proton pump interactor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 242/460 (52%), Positives = 333/460 (72%)

Query:    22 QENGKLDKGPVKDESIIFGSHGGVGELV-NGKESN--VSNANLPKDVGEEWPEPRVIHNF 78
             ++NGKLD+G   D  I FGS   VGEL  N +E+N  V N++ PK+  EEWP  + IH+F
Sbjct:    23 EKNGKLDQGKGDDAPINFGS---VGELPKNAEENNNKVVNSDAPKNAAEEWPVAKQIHSF 79

Query:    79 YFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGR 138
             Y +++R Y DPKI+AK+DL D+E+++ N+AR  ++D+LRAKR  R +L   L  LK+E +
Sbjct:    80 YLVKYRSYADPKIKAKLDLADKELEKLNKARTGVLDKLRAKRAERSELFDLLDPLKSERK 139

Query:   139 QYKSVMDDKRKEMEPLHQALGKLRTTN--NARSGGICSSEEELDDLIRSLQYRIQHEIIP 196
              + ++ D+KRKEMEPL QALGKLR+ +  +AR   ICSSEEEL+ +I S QYRIQHE IP
Sbjct:   140 GFNTMFDEKRKEMEPLQQALGKLRSNDGGSARGPAICSSEEELNSMIYSYQYRIQHESIP 199

Query:   197 LSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQ--LMGSDLDGVKKESQ 254
             L+EEKQIL+EI+ LEGTR+KV+ANAAMRAKI+ESMG+K+DIQ Q  LMG+ LDGVKKE Q
Sbjct:   200 LTEEKQILKEIRLLEGTRDKVIANAAMRAKIKESMGQKDDIQGQVKLMGAGLDGVKKERQ 259

Query:   255 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 314
             A+ A+I+ L  K+KA  +EI  L+ E+  V+EKRDKA++NI +LR+QRDE N+ ++Q R 
Sbjct:   260 AISARINELSEKLKATKDEITVLENELKTVSEKRDKAYSNIHDLRRQRDETNSEYYQNRT 319

Query:   315 LLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGR 374
             +LN+A+ ++ +K++  L+ L+N+EVEK+++LW + K FR+DYEKR+LQSLD RQLSRDGR
Sbjct:   320 VLNKARDLAAQKNISELEALANAEVEKFISLWCSKKNFREDYEKRILQSLDSRQLSRDGR 379

Query:   375 IRNPDEKPLVVAETS----VPSEPEIVAKPNVK-QSKGDSKSASQKDTLPTQKVQK--EA 427
             +RNPDEKPL+  E +     PSE E+V K   K Q K +  SA + D    Q  +K  +A
Sbjct:   380 MRNPDEKPLIAPEAAPSKATPSETEVVPKAKAKPQPKEEPVSAPKPDATVAQNTEKAKDA 439

Query:   428 AK-KETEDTADFEIPVVEKPASEKK-VDEAKLREMKKEED 465
              K K   D  D E+  + KP  E+K VD A  +EM+K+E+
Sbjct:   440 VKVKNVADDDDDEVYGLGKPQKEEKPVDAATAKEMRKQEE 479
GO:0005737 "cytoplasm" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0005886 "plasma membrane" evidence=IDA
GO:0010155 "regulation of proton transport" evidence=IDA;TAS
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
TAIR|locus:2087115 PPI2 "proton pump interactor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037365 AT1G20970 "AT1G20970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147366 AT5G36690 "AT5G36690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149084 AT5G36780 "AT5G36780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037059 AT1G53110 "AT1G53110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C849 CIT "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SP83 IFT74 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1359704 Ift74 "intraflagellar transport 74 homolog (Chlamydomonas)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23144PPI1_ARATHNo assigned EC number0.51630.89180.7549yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XI0297
hypothetical protein (620 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-04
PRK05771 646 PRK05771, PRK05771, V-type ATP synthase subunit I; 6e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-04
COG1340294 COG1340, COG1340, Uncharacterized archaeal coiled- 0.003
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information 
 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 42/224 (18%), Positives = 100/224 (44%), Gaps = 18/224 (8%)

Query: 92  RAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEM 151
             ++    R+I    +   QL  E    +    +L   L SL+ E    KS + +    +
Sbjct: 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI 767

Query: 152 EPLHQALGKLRTTNNA--------RSGGICSSEEELDDLIRSLQYRIQH---EIIPLSEE 200
           E L + L KL    N         R   I +   +L++ +  ++ R++    ++  L+ E
Sbjct: 768 EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLE 827

Query: 201 KQILR-EIKQLEGTREKVMANAAM-RAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWA 258
           K+ L  EI++L+  R  +         +I+   GKKE+++      +L+ ++   + + +
Sbjct: 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE-----EELEELEAALRDLES 882

Query: 259 KISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302
           ++  L+ +   L+ ++  L++++ ++  + +K    + EL+ + 
Sbjct: 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 518
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 99.67
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 98.36
PRK03918880 chromosome segregation protein; Provisional 97.88
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.77
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.75
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.73
PRK11637428 AmiB activator; Provisional 97.7
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.7
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.68
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.63
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.57
PRK03918880 chromosome segregation protein; Provisional 97.54
PHA02562562 46 endonuclease subunit; Provisional 97.53
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.52
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.48
PRK04778569 septation ring formation regulator EzrA; Provision 97.46
PRK02224 880 chromosome segregation protein; Provisional 97.46
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 97.43
PHA02562562 46 endonuclease subunit; Provisional 97.38
TIGR006061311 rad50 rad50. This family is based on the phylogeno 97.3
PRK02224 880 chromosome segregation protein; Provisional 97.22
KOG0964 1200 consensus Structural maintenance of chromosome pro 97.18
KOG0964 1200 consensus Structural maintenance of chromosome pro 97.16
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 97.14
PRK11637428 AmiB activator; Provisional 97.11
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.0
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.95
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.81
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.74
PF00038312 Filament: Intermediate filament protein; InterPro: 96.69
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.54
PRK01156 895 chromosome segregation protein; Provisional 96.54
KOG0979 1072 consensus Structural maintenance of chromosome pro 96.42
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 96.41
PRK01156895 chromosome segregation protein; Provisional 96.4
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 96.29
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 96.27
KOG4673 961 consensus Transcription factor TMF, TATA element m 96.12
KOG0977546 consensus Nuclear envelope protein lamin, intermed 96.09
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.94
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 95.88
PF05701522 WEMBL: Weak chloroplast movement under blue light; 95.77
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.62
KOG0962 1294 consensus DNA repair protein RAD50, ABC-type ATPas 95.6
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.49
PRK09039343 hypothetical protein; Validated 95.47
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 95.13
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 95.09
KOG4673 961 consensus Transcription factor TMF, TATA element m 95.05
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.0
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 94.98
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 94.88
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.7
PRK04778569 septation ring formation regulator EzrA; Provision 94.66
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 94.56
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 94.31
KOG0933 1174 consensus Structural maintenance of chromosome pro 94.3
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 94.25
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 94.15
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 94.1
PF122521439 SidE: Dot/Icm substrate protein; InterPro: IPR0210 94.01
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 93.89
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 93.49
PRK04863 1486 mukB cell division protein MukB; Provisional 93.38
KOG0971 1243 consensus Microtubule-associated protein dynactin 93.11
COG4477570 EzrA Negative regulator of septation ring formatio 93.06
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 92.94
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.65
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 92.57
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 92.48
KOG0979 1072 consensus Structural maintenance of chromosome pro 92.43
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 92.22
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 92.16
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 92.11
PF00038312 Filament: Intermediate filament protein; InterPro: 92.11
KOG4302 660 consensus Microtubule-associated protein essential 92.02
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 91.95
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 91.92
COG5185622 HEC1 Protein involved in chromosome segregation, i 91.83
PRK04863 1486 mukB cell division protein MukB; Provisional 91.41
TIGR00634563 recN DNA repair protein RecN. All proteins in this 91.39
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 91.29
KOG0018 1141 consensus Structural maintenance of chromosome pro 91.25
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 90.92
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.81
PF135141111 AAA_27: AAA domain 90.8
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 90.26
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 90.21
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 90.16
PRK09039343 hypothetical protein; Validated 90.16
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 90.06
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 90.0
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 89.68
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 89.31
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 89.31
KOG09621294 consensus DNA repair protein RAD50, ABC-type ATPas 89.06
PF09304107 Cortex-I_coil: Cortexillin I, coiled coil; InterPr 88.46
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 88.23
COG4942420 Membrane-bound metallopeptidase [Cell division and 87.99
PF05701522 WEMBL: Weak chloroplast movement under blue light; 87.96
COG4026290 Uncharacterized protein containing TOPRIM domain, 87.87
PRK10929 1109 putative mechanosensitive channel protein; Provisi 87.81
KOG0963629 consensus Transcription factor/CCAAT displacement 86.71
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 86.52
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 86.49
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 86.31
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 86.12
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 86.08
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 86.07
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 85.23
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 84.99
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 84.73
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 84.46
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 84.37
PF13166712 AAA_13: AAA domain 84.29
PRK11281 1113 hypothetical protein; Provisional 84.22
COG4026290 Uncharacterized protein containing TOPRIM domain, 83.94
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 83.94
KOG1962216 consensus B-cell receptor-associated protein and r 83.83
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 83.65
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 83.38
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 83.36
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 83.27
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 83.2
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 82.97
PF13870177 DUF4201: Domain of unknown function (DUF4201) 82.74
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 82.61
COG4942420 Membrane-bound metallopeptidase [Cell division and 81.59
PF03999 619 MAP65_ASE1: Microtubule associated protein (MAP65/ 81.52
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 81.1
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 80.47
PF0472856 LPP: Lipoprotein leucine-zipper; InterPro: IPR0068 80.41
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 80.38
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information 
Probab=99.67  E-value=1.5e-13  Score=139.39  Aligned_cols=220  Identities=21%  Similarity=0.338  Sum_probs=177.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhh--------
Q 010079           89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGK--------  160 (518)
Q Consensus        89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~k--------  160 (518)
                      +.+..++..+...+..+++.|..++..++..+++|+++..+.+.++++.+.+++.+++..+++..|.+....        
T Consensus         9 ~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL   88 (294)
T COG1340           9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL   88 (294)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667778888899999999999999999999999999999999999888888888877777777653322        


Q ss_pred             ------hhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010079          161 ------LRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKK  234 (518)
Q Consensus       161 ------lre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~k  234 (518)
                            +++..+... +...|+..|...|.+|+|.++|.+||+.+|+++++.|++|++....+.          ..+...
T Consensus        89 ~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~----------k~~e~~  157 (294)
T COG1340          89 RKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAK----------KALEEN  157 (294)
T ss_pred             HHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence                  222222221 456799999999999999999999999999999999999999988744          233333


Q ss_pred             hhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010079          235 EDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA  314 (518)
Q Consensus       235 e~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~  314 (518)
                      ..+++  +.++++.++++...++.+|..+.++...+..++..+..+.|.++.+.|++...+..++...++++..|-+...
T Consensus       158 ~~~~e--l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~  235 (294)
T COG1340         158 EKLKE--LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQN  235 (294)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34433  3567899999999999999999999999999999999999999999999998888888888888887777777


Q ss_pred             HHHHHHH
Q 010079          315 LLNEAKA  321 (518)
Q Consensus       315 ~l~kare  321 (518)
                      .++....
T Consensus       236 elre~~k  242 (294)
T COG1340         236 ELRELEK  242 (294)
T ss_pred             HHHHHHH
Confidence            6666543

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 71/508 (13%), Positives = 152/508 (29%), Gaps = 141/508 (27%)

Query: 67  EEWPEPRVIHNFY-FIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGD 125
            E  +P ++   Y   R R Y+D ++ AK           N +R+Q   +LR        
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAK----------YNVSRLQPYLKLRQA------ 143

Query: 126 LAAQLRSLKTE-----------GRQYKSVM------DDKRKEMEPLHQALGKLRTTNNAR 168
               L  L+             G   K+ +        K +                   
Sbjct: 144 ----LLELRPAKNVLIDGVLGSG---KTWVALDVCLSYKVQCKMD--------------- 181

Query: 169 SGGI-------CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANA 221
              I       C+S E + ++++ L Y+I       S+         ++   + +     
Sbjct: 182 -FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD--HSSNIKLRIHSIQAE----- 233

Query: 222 AMRAKIQESMGKK-----EDIQDQLMGSDLDG-----VKKESQAVWAKISHLEGKVKALD 271
            +R  ++    +       ++Q+    +  +      +    + V   +S       +LD
Sbjct: 234 -LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 272 EEIEAL-QQEVNDVAEKRDKAFANIK--ELRKQRDEGNAYFFQYRALLNEAKAMSVKKDV 328
                L   EV  +  K    + + +  +L ++    N      R L     ++  +   
Sbjct: 293 HHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNP-----RRL-----SIIAESIR 338

Query: 329 QGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK-PLVVAE 387
            GL    N    K++                 L+  + R++     +  P    P ++  
Sbjct: 339 DGLATWDNW---KHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 388 T----SVPSEPEIVAKPNVKQS--KGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIP 441
                 + S+  +V     K S  +   K ++   ++P+  ++    K + E+       
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLEL---KVKLENEYALHRS 448

Query: 442 VVEKPASEKKVDEAK-----------------LREMKKEEDRAKAREG------MERK-R 477
           +V+     K  D                    L+ ++  E     R        +E+K R
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 478 KKEEAKVAKAALRAEKQRKEIIYGTYFF 505
               A  A  ++    Q+ +  Y  Y  
Sbjct: 509 HDSTAWNASGSILNTLQQLK-FYKPYIC 535
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.68
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.53
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 97.5
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.93
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.62
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.44
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 93.68
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.52
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 89.24
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 88.88
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 88.77
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 88.28
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 87.92
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 86.1
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 85.11
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 84.09
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 84.03
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 83.53
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 82.21
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 81.83
3i00_A120 HIP-I, huntingtin-interacting protein 1; transcrip 80.97
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 80.11
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.68  E-value=0.035  Score=51.61  Aligned_cols=62  Identities=13%  Similarity=0.172  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhh
Q 010079           90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEM  151 (518)
Q Consensus        90 ~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Ei  151 (518)
                      .|+.+|..+..++..+...-..+...+.........+...+..+......+...+.....++
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (284)
T 1c1g_A            3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL   64 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666666666555555555555554444444444444444444444444333333333
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
d2efla1288 Formin-binding protein 1, FNBP1 {Human (Homo sapie 87.62
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 81.4
d1seta1110 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 80.14
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.62  E-value=7.9  Score=34.19  Aligned_cols=19  Identities=5%  Similarity=0.106  Sum_probs=8.6

Q ss_pred             hhhHHHHHHHhHHHHHhhh
Q 010079          350 KAFRDDYEKRLLQSLDMRQ  368 (518)
Q Consensus       350 ~~FR~dY~k~~~~s~~~R~  368 (518)
                      ..+|.+|+..-+++++..+
T Consensus       198 n~~~~~~~~~~~~~~~~~~  216 (288)
T d2efla1         198 NHEQHEYYHTHIPNIFQKI  216 (288)
T ss_dssp             HHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445555444444444433
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure