Citrus Sinensis ID: 010080

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE
Secondary Structure (PSIPRED)
ccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccHcHHccHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHcccccccEEcHHHHHHccEcccccHHcEEEEccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
maddslnhhkrdpikssvgnvaaqRRRQNAVTVGKERRESLVRAKRLCrvgtsadgevssdsdmmVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSrfefppietalkagaIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAhlgekssspvAEQCAWALGNVAGEGEEFRNVLlsqgalpplarmmlpnkgsTVRTAAWALSnlikgpdpkpatelIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLgnlvagdsstisdvlvpghgiTDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNlcvsptegegkpkLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLrgmpnhegtklveredGIDAMERFQFHENEDLRNMANGLVdkyfgedyglde
Flexible Loop (DISEMBL)
maddslnhhkrdpikssvgnvaaqrrrqnavtvgkerreslvrakrlcrvgtsadgevssdsdmMVDEEQSILEMQTSSAVEELKSAVayhgkgamqKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSnlikgpdpkpATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLrgmpnhegtklvereDGIDAMERFQFhenedlrnmANGLVDKYFGEDYGLDE
Low Complexity Region (SEG)
MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNAlrelrrllsrfefPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKallpalpllIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQlihssealalllhllstsPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE
Disordered region (IsUnstruct)
***************************************************************************************VAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLV*****IDAMERFQFHE**DLRNMANGLVDKYFGE******
Disordered Region (DISOPRED)
******************************VTVGKERRESLVRAKRL*******************************SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGL**
Disordered Region (DISEMBL)
**********RDPIKSSVG*********************LVRAKRLCRVGT***********MMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE
Disordered Region (DISPRO)
****************S****AAQR**Q*AVTVGKERRESLVRAK*********************************SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	518	2.2.26 [Sep-21-2011]
Q9FYP9	528	Importin subunit alpha-2	yes	no	0.988	0.969	0.655	0.0
Q71VM4	526	Importin subunit alpha-1a	no	no	0.901	0.887	0.317	3e-56
Q02821	542	Importin subunit alpha OS	yes	no	0.897	0.857	0.301	1e-55
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.918	0.891	0.308	2e-53
O04294	531	Importin subunit alpha-2	no	no	0.901	0.879	0.298	1e-52
A9QM74	516	Importin subunit alpha-8	yes	no	0.758	0.761	0.326	2e-52
Q96321	532	Importin subunit alpha-1	no	no	0.903	0.879	0.314	3e-52
O22478	527	Importin subunit alpha OS	N/A	no	0.922	0.907	0.304	3e-51
Q76P29	516	Importin subunit alpha-B	yes	no	0.903	0.906	0.305	7e-51
Q19969	514	Importin subunit alpha-3	yes	no	0.882	0.889	0.277	8e-51

>sp|Q9FYP9|IMA2_ORYSJ Importin subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os01g0158000 PE=2 SV=1

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/514 (65%), Positives = 415/514 (80%), Gaps = 2/514 (0%)

Query: 6   LNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVS-SDSDM 64
           L HH R+ +KSSV N AA RRR+ A+ +GKERRE+L+RAKR+CR   S   E    + DM
Sbjct: 16  LQHH-REALKSSVRNTAASRRREQAIAIGKERREALIRAKRVCRAPISGSDEAEMEEGDM 74

Query: 65  MVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKA 124
           +VDEE++ LE +T+ AVEELKSA++  GKG  +K++ ALR+LRRLLS+ E P ++TA+KA
Sbjct: 75  VVDEEKACLEAKTAHAVEELKSALSIQGKGVQKKKIEALRDLRRLLSQPEVPLVDTAIKA 134

Query: 125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVA 184
           GA+P+LVQ L+FGS DEQLLEAAWCLTNIAAG+ EETK+LLPALPLLIAHLGEKSS+ VA
Sbjct: 135 GAVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEPEETKSLLPALPLLIAHLGEKSSTLVA 194

Query: 185 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP 244
           EQCAWA+GNVAGEG E R+ LL+QGAL PL R+M  +KGST RTAAWA+SNLIKGPDPK 
Sbjct: 195 EQCAWAIGNVAGEGAELRSTLLAQGALRPLTRLMFSSKGSTARTAAWAMSNLIKGPDPKA 254

Query: 245 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL 304
           A ELI +DG+L+AI+  L++ DEEL TEVAWVVVYLSALS+   SL+V+S V QLL+ RL
Sbjct: 255 ANELITIDGVLNAIIASLEKEDEELATEVAWVVVYLSALSDRGISLIVRSSVPQLLIGRL 314

Query: 305 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEA 364
            +S +LQLLIPVLR LGNL+A D   +  VL  GH I DQ ++ L+KCLKS++RVL+KE+
Sbjct: 315 FSSENLQLLIPVLRGLGNLIAADDYMVDSVLTVGHNIIDQALSGLIKCLKSDNRVLRKES 374

Query: 365 AWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKP 424
           +W LSNIAAGS EHK+LI +SEA  +L+ L+++  FDI++E AY LGNLCV PT     P
Sbjct: 375 SWALSNIAAGSFEHKKLIFASEATPVLIRLVTSMQFDIRREAAYTLGNLCVVPTGNCELP 434

Query: 425 KLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGI 484
           K+I EHLV++V  G L GFI LVRSAD++ A LGLQF+ELV+RG PN +G KLVE EDGI
Sbjct: 435 KIIVEHLVAIVDGGALPGFIHLVRSADVDTAGLGLQFLELVMRGYPNKQGPKLVEMEDGI 494

Query: 485 DAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
           +AMERFQFHENE +RNMANGLVD+YFGEDYGLDE
Sbjct: 495 EAMERFQFHENEQMRNMANGLVDEYFGEDYGLDE 528

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  219 bits (559), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 164/516 (31%), Positives = 268/516 (51%), Gaps = 49/516 (9%)

Query: 10  KRDPIKSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
           +R+  K +V     +RRR+ N V + K RRE  +  KR  R G  A   V + +   VD+
Sbjct: 12  RRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKR--REGLQAQAPVPASAATGVDK 69

Query: 69  EQSILEMQTSSAVEELKSAVA--YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGA 126
           +           +E L + +   Y     +Q  + A  + R+LLS    PPIE  +++G 
Sbjct: 70  K-----------LESLPAMIGGVYSDDNNLQ--LEATTQFRKLLSIERSPPIEEVIQSGV 116

Query: 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVA 184
           +P  VQ L      +   EAAW LTNIA+G  E TK ++   A+P+ +  LG  SS  V 
Sbjct: 117 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG-SSSDDVR 175

Query: 185 EQCAWALGNVAGEGEEFRNVLLSQGA-LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK 243
           EQ  WALGNVAG+  + R+++L+ GA LP LA++    K S +R A W LSN  +G  P+
Sbjct: 176 EQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG-KPQ 234

Query: 244 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVER 303
           P+ E  +    L A+ R +   DEE+ T+  W + YLS  +N     ++++GV   LVE 
Sbjct: 235 PSFEQTR--PALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE- 291

Query: 304 LATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE 363
           L    S  +LIP LR++GN+V GD +    ++   H     ++++L + LK   + +KKE
Sbjct: 292 LLLHPSPSVLIPALRTVGNIVTGDDAQTQCII--DHQALPCLLSLLTQNLK---KSIKKE 346

Query: 364 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGK 423
           A W +SNI AG+ +  Q + ++  +  L++LL T+ FDIKKE A+ + N     T G   
Sbjct: 347 ACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN----ATSGGS- 401

Query: 424 PKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG--------- 474
                + +  LV  GC+    DL+   DI    + L+ +E +L+     +          
Sbjct: 402 ----HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVF 457

Query: 475 TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
           +++++  +G++ +E  Q H+N ++   A  +++ Y+
Sbjct: 458 SQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 493

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q02821|IMA1_YEAST Importin subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP1 PE=1 SV=1

 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 152/504 (30%), Positives = 253/504 (50%), Gaps = 39/504 (7%)

Query: 25  RRRQNAVTV---GKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEE-QSILEMQTSSA 80
           RRR++   V     +R E+L + +        AD +   +S +  D++  S L+ +    
Sbjct: 33  RRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM 92

Query: 81  VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD 140
            ++L S         MQ++++A  + R++LSR   PPI+  ++AG +P LV+ +    P+
Sbjct: 93  TQQLNS-------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 145

Query: 141 EQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 198
              LEAAW LTNIA+G   +TK ++   A+PL I  L    S  V EQ  WALGNVAG+ 
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI-QLLYTGSVEVKEQAIWALGNVAGDS 204

Query: 199 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 258
            ++R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+P   +  V   L  +
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTL 262

Query: 259 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 318
            + +   D E   +  W + YLS     A   ++   + + LVE L+  ++L +  P LR
Sbjct: 263 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALR 321

Query: 319 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 378
           ++GN+V G+      V+  G      V+  L   L S    +KKEA W +SNI AG+ E 
Sbjct: 322 AVGNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQ 375

Query: 379 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 438
            Q +  +  +  L+ LL  + +  KKE  + + N   + + G  +P +I+     LV +G
Sbjct: 376 IQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQG 428

Query: 439 CLSGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMER 489
           C+    DL+  AD     + L  +E +L         RG+  +E    +E+  G++ +  
Sbjct: 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488

Query: 490 FQFHENEDLRNMANGLVDKYFGED 513
            Q +EN+ +   A  +++ YFGE+
Sbjct: 489 CQQNENDKIYEKAYKIIETYFGEE 512

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 160/519 (30%), Positives = 257/519 (49%), Gaps = 43/519 (8%)

Query: 10  KRDPIKSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
           +R   K +V     +RRR+ N V + K RRE  +  KR  R G  A    ++ +  ++  
Sbjct: 12  RRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKR--RDGLPAAAAAAAAASPLLAH 69

Query: 69  EQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIP 128
             ++ +      +E L + V          ++ A  + R+LLS    PPIE  +  G +P
Sbjct: 70  SSALQQ-----KLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVP 124

Query: 129 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQ 186
             +  L      +   EAAW LTNIA+G  + TK ++   A+P+ +  L   S   V EQ
Sbjct: 125 RFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSED-VREQ 183

Query: 187 CAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPA 245
             WALGNVAG+  + R+++L+ G L PL + +  + K S +R A W LSN  +G   KP 
Sbjct: 184 AVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRG---KPQ 240

Query: 246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA 305
               +V   L A+ R +   DEE+ T+  W + YLS  +N     +++SGV   LVE L 
Sbjct: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVE-LL 299

Query: 306 TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEA 364
              S  +LIP LR++GN+V GD      V      I  Q +  L+  L + H+  +KKEA
Sbjct: 300 MHPSASVLIPALRTVGNIVTGDDMQTQCV------IDHQALPCLLNLLTNNHKKSIKKEA 353

Query: 365 AWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKP 424
            W +SNI AG+ E  Q + ++  +A L+HLL T+ FDIKKE A+ + N     T      
Sbjct: 354 CWTISNITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGT------ 407

Query: 425 KLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR----------GMPNHEG 474
               + +  LV +GC+    DL+   D     + L+ +E +L+          G  N   
Sbjct: 408 ---HDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYA 464

Query: 475 TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
            ++++  +G++ +E  Q H+N ++   A  +++ Y+ E+
Sbjct: 465 -QMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWLEE 502

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  207 bits (528), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/520 (29%), Positives = 263/520 (50%), Gaps = 53/520 (10%)

Query: 10  KRDPIKSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
           +R+  K +V     +RRR+ N V + K +RE  ++ KR     + A G  +  ++     
Sbjct: 12  RRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRF--TSSMAFGSATGQTE----- 64

Query: 69  EQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRE----LRRLLSRFEFPPIETALKA 124
                  Q  S+  +LK  +     G   +  N+  E    LR+LLS  + PPI   +++
Sbjct: 65  -------QDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQS 117

Query: 125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSP 182
           G +P +V+ L+     +   EAAW LTNIA+G  E T  ++   A+P+ I  L   +S  
Sbjct: 118 GVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFI-QLLSSASED 176

Query: 183 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPD 241
           V EQ  WALGNVAG+  + R+++LS GA+ PL      N K S +R A W LSN  +G  
Sbjct: 177 VREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRG-K 235

Query: 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLV 301
           P PA E  +    L  + R ++  DEE+ T+  W + YLS  SN     ++++GV+  L+
Sbjct: 236 PPPAFE--QTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLI 293

Query: 302 ERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH-RVL 360
           + L  S S  +LIP LR++GN+V GD      VL        Q +  L+  LK+ + + +
Sbjct: 294 QLLGHS-SPSVLIPALRTIGNIVTGDDLQTQMVL------DQQALPCLLNLLKNNYKKSI 346

Query: 361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG 420
           KKEA W +SNI AG+ +  Q +  +  +  L+ +L ++ F++KKE A+ + N     T  
Sbjct: 347 KKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGT-- 404

Query: 421 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL-----RGMPNHEG- 474
                   + +  +V +GC+    DL+   D++   + L+ +E +L          H G 
Sbjct: 405 -------HDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGE 457

Query: 475 ----TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                ++++  +G++ +E  Q H+N D+ + A  +++ ++
Sbjct: 458 DNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|A9QM74|IMA8_HUMAN Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 PE=1 SV=1

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/419 (32%), Positives = 221/419 (52%), Gaps = 26/419 (6%)

Query: 102 ALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161
           A +  R++LS+ + PP++  ++AG IP +V+ L          EAAW LTNIA+G  E+T
Sbjct: 90  ATQTARKMLSQEKNPPLKLVIEAGLIPRMVEFLKSSLYPCLQFEAAWALTNIASGTSEQT 149

Query: 162 KALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 219
           +A++   A+  LI  L   S+  V EQ  WALGN+AG+G EFR+ +++  A+P L  ++ 
Sbjct: 150 RAVVEGGAIQPLIELLS-SSNVAVCEQAVWALGNIAGDGPEFRDNVITSNAIPHLLALIS 208

Query: 220 PNKGST-VRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV 278
           P    T +R   W LSNL +  +P P    +K   +L A+L  L+  D E+ ++  W + 
Sbjct: 209 PTLPITFLRNITWTLSNLCRNKNPYPCDTAVK--QILPALLHLLQHQDSEVLSDACWALS 266

Query: 279 YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPG 338
           YL+  SN     +V +GVL  LV  L TS+ L +L P LR++GN+V G        +  G
Sbjct: 267 YLTDGSNKRIGQVVNTGVLPRLV-VLMTSSELNVLTPSLRTVGNIVTGTDEQTQMAIDAG 325

Query: 339 HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS 398
                 ++ VL + L+     ++KEAAW LSN+AAG   H Q + + + L  L+ LL   
Sbjct: 326 ------MLNVLPQLLQHNKPSIQKEAAWALSNVAAGPCHHIQQLLAYDVLPPLVALLKNG 379

Query: 399 PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLG 458
            F ++KE  +++ N     T          + L+ LV  G L   ++L+ + D++   + 
Sbjct: 380 EFKVQKEAVWMVANFATGAT---------MDQLIQLVHSGVLEPLVNLLTAPDVKIVLII 430

Query: 459 LQFMELVLRGMPNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
           L  +  +L+        +    L+E   GID +E  Q HEN  +   A  +++K+FGE+
Sbjct: 431 LDVISCILQAAEKRSEKENLCLLIEELGGIDRIEALQLHENRQIGQSALNIIEKHFGEE 489

Functions in nuclear protein import.

Homo sapiens (taxid: 9606)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  206 bits (524), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 164/522 (31%), Positives = 258/522 (49%), Gaps = 54/522 (10%)

Query: 10  KRDPIKSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
           +R+  K +V     +RRR+ N V + K +RE  +  KR  R G  A     S S   VD+
Sbjct: 12  RRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKR--REGMQALQGFPSASAASVDK 69

Query: 69  EQSILEMQTSSAVEELKSAVA--YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGA 126
           +           ++ LK  VA  +    A+Q  + +  + R+LLS    PPIE  + AG 
Sbjct: 70  K-----------LDSLKDMVAGVWSDDPALQ--LESTTQFRKLLSIERSPPIEEVISAGV 116

Query: 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVA 184
           +P  V+ L          EAAW LTNIA+G  + TK ++   A+P+ +  L   S   V 
Sbjct: 117 VPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDD-VR 175

Query: 185 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPK 243
           EQ  WALGNVAG+    R+++L  GAL PL   +  + K S +R A W LSN  +G   K
Sbjct: 176 EQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRG---K 232

Query: 244 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVER 303
           P     +V   L A+ R +   DEE+ T+  W + YLS  +N     ++++GV+  LVE 
Sbjct: 233 PQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVE- 291

Query: 304 LATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKK 362
           L   +S  +LIP LR++GN+V GD      V+  G       +  L   L   H+  +KK
Sbjct: 292 LLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSG------ALPCLANLLTQNHKKSIKK 345

Query: 363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG 422
           EA W +SNI AG+ +  Q +  +  ++ L+ LL  + FDIKKE A+ + N     T G  
Sbjct: 346 EACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNA----TSGGS 401

Query: 423 KPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR-----------GMPN 471
                 + +  LV +GC+    DL+   D     + L+ +E +L+           G  N
Sbjct: 402 -----HDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMN 456

Query: 472 HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
           +   +L++  +G++ +E  Q H+N ++   A  +++ Y+ E+
Sbjct: 457 YYA-QLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  203 bits (517), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 160/525 (30%), Positives = 259/525 (49%), Gaps = 47/525 (8%)

Query: 4   DSLNHHKRDPIKSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDS 62
           +S    +R   K +V     +RRR+ N V + K +RE  +  KR  R G     +  S +
Sbjct: 6   NSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKR--REGLLQAQQFPSTA 63

Query: 63  DMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETAL 122
            +                +E L   +A         ++    + R+LLS    PPIE  +
Sbjct: 64  AVS----------HLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVI 113

Query: 123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSS 180
           ++G +P  V+ LA     +   EAAW LTNIA+G  E TK ++   ++P+ I  L   S 
Sbjct: 114 QSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSD 173

Query: 181 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGSTVRTAAWALSNLIKG 239
             V EQ  WALGN+AG+  ++R+++L  GAL   LA+     K S +R A W LSN  +G
Sbjct: 174 D-VREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRG 232

Query: 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 299
             P+P  E  K    L  + R +   DEE+ T+  W + YLS  +N     ++++GV   
Sbjct: 233 -KPQPLFEQTK--AALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSR 289

Query: 300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH-R 358
           LVE L  S S  +LIP LR++GN+V GD    + V++  H      +  LV  L   + +
Sbjct: 290 LVELLLHS-SPSVLIPALRTVGNIVTGDDIQ-TQVMIDHHA-----LPCLVNLLTQNYKK 342

Query: 359 VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPT 418
            +KKEA W +SNI AG+    Q++  +  +A L++LL  + F+IKKE A+ + N     T
Sbjct: 343 SIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISN----AT 398

Query: 419 EGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL------RGMPNH 472
            G        + +  LV +GC+    DL+   D     + L+ +E +L      + + N 
Sbjct: 399 SGGN-----HDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNT 453

Query: 473 EGT----KLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
           EG     +L++  +G++ +E  Q H+N ++   A  +++ Y+ E+
Sbjct: 454 EGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEE 498

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  202 bits (513), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 161/527 (30%), Positives = 266/527 (50%), Gaps = 59/527 (11%)

Query: 10  KRDPIKSSVGNVAAQRRRQNA-VTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
           ++   K S+ +  ++R+R+ A +++ K +RE  +  KR   V  S   +V S  +  +++
Sbjct: 9   RKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLINQRLEQ 68

Query: 69  EQSIL-EMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAI 127
             S++ E+ + +    LKS  A+                R+LLS  + PPIE  +K G +
Sbjct: 69  LPSLVAEINSENPDLILKSTTAF----------------RKLLSIEKSPPIEEVIKTGIV 112

Query: 128 PVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSP--- 182
           P LV+ L      +   EAAW LTNIA+G  E+T+ ++   A+ + +  L    SSP   
Sbjct: 113 PRLVKFLYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLL----SSPHDD 168

Query: 183 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN----KGSTVRTAAWALSNLIK 238
           V EQ  WALGN+AG+    R+++LS  ALPPL  + L N    K S VR A W LSN  +
Sbjct: 169 VREQAVWALGNIAGDSHYCRDLVLSHNALPPLLSL-LQNPAAIKVSMVRNATWTLSNFCR 227

Query: 239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQ 298
           G  P+P  E+++    L  + + +   DEE+  +  W + YLS  SN     ++ + V +
Sbjct: 228 G-KPQPPFEIVRAS--LPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCR 284

Query: 299 LLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR 358
            +VE L    ++ +  P LR++GN+V GD +    VL      + Q ++ L+  L+S  R
Sbjct: 285 KMVELLGHP-TIAVQTPALRTIGNIVTGDDNQTQIVL------SVQALSHLLNLLQSPKR 337

Query: 359 VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPT 418
            ++KEA W +SNI AG     Q +  +  +  L++LL+ + F+I+KE A+ + N      
Sbjct: 338 AIRKEACWTISNITAGDKNQIQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSC-- 395

Query: 419 EGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL-RGMPNHEGT-- 475
              G P+ I  H   LV +GC+    DL++ +D     + L+ +E +L  G    + T  
Sbjct: 396 ---GTPQQI--HF--LVSQGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKEAQVTGV 448

Query: 476 ----KLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
               K++E  DG+  +   Q H N+D     + ++  Y  ED   DE
Sbjct: 449 NPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTYL-EDEQEDE 494

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|Q19969|IMA3_CAEEL Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2

 Score =  201 bits (512), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 139/501 (27%), Positives = 245/501 (48%), Gaps = 44/501 (8%)

Query: 21  VAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQ---SILEMQT 77
           +  ++R +  V++ K++RE  +  +R        D E S+      D      ++   Q+
Sbjct: 17  IGKEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSETSTTPPGPFDANLLRLTVAAAQS 76

Query: 78  SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG 137
           S   E+L                 A+++ R++LS    PPI+  + +G +PVLVQCL+  
Sbjct: 77  SDPAEQLT----------------AVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSST 120

Query: 138 SPDEQLLEAAWCLTNIAAGKQEETKALLPA--LPLLIAHLGEKSSSPVAEQCAWALGNVA 195
            P+ Q  EAAW LTNIA+G  E+T+A++ A  +PL +  L   + + V EQ  WALGN+ 
Sbjct: 121 DPNLQF-EAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLN-VCEQSVWALGNII 178

Query: 196 GEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPATELIKVDGL 254
           G+G  FR+  L  G L PL + + P      +R   W + NL +  DP P+  +++   +
Sbjct: 179 GDGPHFRDYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRT--I 236

Query: 255 LDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI 314
           L A+   +   D  +  +  W + YL+   N    +++++ V+  LV  L   + +++  
Sbjct: 237 LPALSLLIHHQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLLGHVD-VKVQT 295

Query: 315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 374
             LR++GN+V G       VL  G      V+  +   L      + KEA W +SNI AG
Sbjct: 296 AALRAVGNIVTGTDEQTQLVLDSG------VLRFMPGLLAHYKEKINKEAVWFVSNITAG 349

Query: 375 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL 434
           + +  Q +  +  + +++HLL    F  +KE A+ + N+ +S     G+P  +++    +
Sbjct: 350 NQQQVQDVFDAGIMPMIIHLLDRGDFPTQKEAAWAISNVTIS-----GRPNQVEQ----M 400

Query: 435 VGRGCLSGFIDLVRSADIEAARLGLQFMELVLR--GMPNHEGTKLVEREDGIDAMERFQF 492
           V  G L  F  ++   D +  ++ L  +  +L+  G    + T  +E   G+D +E  Q 
Sbjct: 401 VKLGVLRPFCAMLSCTDSQIIQVVLDGINNILKMAGEAAEQVTSEIEECGGLDKIENLQN 460

Query: 493 HENEDLRNMANGLVDKYFGED 513
           HENED+  +A  ++D +F  D
Sbjct: 461 HENEDIYKLAFEIIDNFFSSD 481

Essential gene for embryonic and larval development. Required for oogenic development, ima-1 and ima-2 cannot functionally compensate for loss of ima-3.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
224140169	522	predicted protein [Populus trichocarpa]	1.0	0.992	0.851	0.0
225439906	517	PREDICTED: importin subunit alpha-2 [Vit	0.998	1.0	0.835	0.0
255568398	517	Importin alpha-2 subunit, putative [Rici	0.992	0.994	0.845	0.0
356548222	517	PREDICTED: importin subunit alpha-2-like	0.990	0.992	0.791	0.0
147784526	530	hypothetical protein VITISV_032422 [Viti	0.990	0.967	0.803	0.0
356548224	522	PREDICTED: importin subunit alpha-2-like	1.0	0.992	0.781	0.0
145357578	519	importin alpha isoform 9 [Arabidopsis th	1.0	0.998	0.764	0.0
297810383	519	binding protein [Arabidopsis lyrata subs	1.0	0.998	0.764	0.0
449448830	518	PREDICTED: importin subunit alpha-2-like	1.0	1.0	0.768	0.0
449503443	522	PREDICTED: importin subunit alpha-2-like	1.0	0.992	0.762	0.0

>gi|224140169|ref|XP_002323457.1| predicted protein [Populus trichocarpa] gi|222868087|gb|EEF05218.1| predicted protein [Populus trichocarpa]

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/519 (85%), Positives = 477/519 (91%), Gaps = 1/519 (0%)

Query: 1   MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSAD-GEVS 59
           MA+D LN H+RDPIKSSVGNVAA RRRQNAV VGKERRESLVRAKRLCRVG S D  ++S
Sbjct: 1   MAEDGLNPHRRDPIKSSVGNVAAHRRRQNAVAVGKERRESLVRAKRLCRVGPSCDDSDIS 60

Query: 60  SDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIE 119
            ++DM++DEEQSILE QTSSAVEELKSAV++ GKGAMQK V ALRE+RRLLS+ EFPP+E
Sbjct: 61  IENDMIIDEEQSILEAQTSSAVEELKSAVSFQGKGAMQKLVGALREMRRLLSKSEFPPVE 120

Query: 120 TALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKS 179
            A+KAGAIP+LVQCL+FGSPDEQLLEAAWCLTNIAAGK EETKALLPALPLLIAHLGEKS
Sbjct: 121 AAIKAGAIPLLVQCLSFGSPDEQLLEAAWCLTNIAAGKPEETKALLPALPLLIAHLGEKS 180

Query: 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239
           S PVAEQCAWALGNVAGEGEE R+VLL QGALPPLARMMLPNKGSTVRTAAWALSNLIKG
Sbjct: 181 SLPVAEQCAWALGNVAGEGEELRSVLLCQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 240

Query: 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 299
           PD K ATELI+VDG+LDAILRHL++ADEEL TEVAWVVVYLSALSNVATS+LVKS  LQL
Sbjct: 241 PDHKAATELIRVDGVLDAILRHLRKADEELATEVAWVVVYLSALSNVATSMLVKSDALQL 300

Query: 300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359
           LV+RLA+SNSLQLLIPVLRSLGN++AGDS TI  VL+PG  ITD VI VLVKCLKSEHRV
Sbjct: 301 LVQRLASSNSLQLLIPVLRSLGNVIAGDSHTIVAVLLPGCEITDNVIEVLVKCLKSEHRV 360

Query: 360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTE 419
           LKKEAAWVLSNIAAGS+EHKQLI+ SEA  LLL LLST+PFDI+KEVAYVLGNLCV+PTE
Sbjct: 361 LKKEAAWVLSNIAAGSIEHKQLIYYSEAAPLLLRLLSTAPFDIRKEVAYVLGNLCVAPTE 420

Query: 420 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVE 479
           G+GKP LI EHLVSLVGRGCL GFIDLVRSAD EAARLGLQFMELVLRGMPN EG KLVE
Sbjct: 421 GDGKPNLISEHLVSLVGRGCLPGFIDLVRSADTEAARLGLQFMELVLRGMPNGEGPKLVE 480

Query: 480 REDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
           REDGIDAMERFQFHENEDLRN+AN LVD+YFGEDYGLDE
Sbjct: 481 REDGIDAMERFQFHENEDLRNLANALVDRYFGEDYGLDE 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439906|ref|XP_002279724.1| PREDICTED: importin subunit alpha-2 [Vitis vinifera] gi|297741569|emb|CBI32701.3| unnamed protein product [Vitis vinifera]

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/518 (83%), Positives = 467/518 (90%), Gaps = 1/518 (0%)

Query: 1   MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSS 60
           MADD L  H+RDPIKSSVGNVAA RRRQ A+TVGKERRE+LVR KRLCRVG S D +V  
Sbjct: 1   MADDGLASHRRDPIKSSVGNVAANRRRQQAITVGKERREALVRTKRLCRVGISGDSDVPV 60

Query: 61  DSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIET 120
           D DMM+DEEQSILE QTSSAVEELKS V Y GKGAMQKRV+ALR+LRRLLSR EFPPIE 
Sbjct: 61  DGDMMIDEEQSILETQTSSAVEELKSTVIYQGKGAMQKRVSALRDLRRLLSRSEFPPIEA 120

Query: 121 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSS 180
           ALKAGA+ VLVQCL+FGSPDEQLLEAAWCLTNIAAGK EETKAL+PALPLLIAHLGEKSS
Sbjct: 121 ALKAGAVSVLVQCLSFGSPDEQLLEAAWCLTNIAAGKPEETKALVPALPLLIAHLGEKSS 180

Query: 181 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 240
            PVAEQCAWALGNVAGEGEE RN+LLSQGALPPLARMM+PNKGSTVRTAAWALSNLIKGP
Sbjct: 181 PPVAEQCAWALGNVAGEGEELRNILLSQGALPPLARMMVPNKGSTVRTAAWALSNLIKGP 240

Query: 241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLL 300
           DPK A+ELI++DG+LDAILRHL++ DEEL TEVAWVVVYLSALS+ ATS+LVKS +LQLL
Sbjct: 241 DPKAASELIQIDGVLDAILRHLRKGDEELATEVAWVVVYLSALSDTATSILVKSNLLQLL 300

Query: 301 VERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL 360
           VERLATSNSLQLLIPVLRSLGNL AG +S  + +LV GH +TD  IA LVKCL SEHRVL
Sbjct: 301 VERLATSNSLQLLIPVLRSLGNLGAG-ASHATCILVVGHEMTDNFIAALVKCLGSEHRVL 359

Query: 361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG 420
           KKEAAWVLSNIAAGS+EHK+LI+SSEA+ LLL LLST+PFDI+KEVAY LGNLCV  +EG
Sbjct: 360 KKEAAWVLSNIAAGSIEHKKLIYSSEAVPLLLRLLSTAPFDIRKEVAYALGNLCVVSSEG 419

Query: 421 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVER 480
            GKP LI EHLVSLVGRGCL GFIDLVRSAD EAA+LGLQFMELVLRGMPN EG KLVER
Sbjct: 420 GGKPALILEHLVSLVGRGCLLGFIDLVRSADTEAAKLGLQFMELVLRGMPNGEGPKLVER 479

Query: 481 EDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
           EDGIDAMERFQFHENEDLRNMANGLVD YFGE+YGLDE
Sbjct: 480 EDGIDAMERFQFHENEDLRNMANGLVDTYFGEEYGLDE 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568398|ref|XP_002525173.1| Importin alpha-2 subunit, putative [Ricinus communis] gi|223535470|gb|EEF37139.1| Importin alpha-2 subunit, putative [Ricinus communis]

 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/518 (84%), Positives = 477/518 (92%), Gaps = 4/518 (0%)

Query: 1   MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSS 60
           MA++ L   KR+PIKSSVGNVAAQ+R+QNAV VGKERRESLVRAKRLCRVGTS D    S
Sbjct: 1   MAEEGLTSLKREPIKSSVGNVAAQKRKQNAVAVGKERRESLVRAKRLCRVGTSGD----S 56

Query: 61  DSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIET 120
           DS+M++DEEQSIL+ QTSSAVEELKSAVA+ GKGAMQK+V ALRELRRLLSR EFPPIE 
Sbjct: 57  DSEMIIDEEQSILDAQTSSAVEELKSAVAFQGKGAMQKKVGALRELRRLLSRSEFPPIEA 116

Query: 121 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSS 180
           A+KAGAI +LVQCL+FGSPDEQLLEAAWCLTNIAAGK EETKALLPALPLLIAHLGE+SS
Sbjct: 117 AIKAGAIILLVQCLSFGSPDEQLLEAAWCLTNIAAGKPEETKALLPALPLLIAHLGERSS 176

Query: 181 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 240
           SPVAEQCAWALGNVAGEGE+ RNVLLSQGALPPLARMMLPN+GSTVRTAAWALSNLIKGP
Sbjct: 177 SPVAEQCAWALGNVAGEGEDLRNVLLSQGALPPLARMMLPNRGSTVRTAAWALSNLIKGP 236

Query: 241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLL 300
           DPK ATELI+VDG+LDAI+RHL++ADEEL TEVAW VVYLSALSNVATS+LVKS VLQLL
Sbjct: 237 DPKAATELIRVDGVLDAIVRHLRKADEELATEVAWAVVYLSALSNVATSMLVKSDVLQLL 296

Query: 301 VERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL 360
           ++RLATSNSLQLLIPVLRSLGNL+AGDS TIS VL+PG  ITD +IAVLVKCLKSEHRVL
Sbjct: 297 IQRLATSNSLQLLIPVLRSLGNLIAGDSHTISAVLLPGIEITDSIIAVLVKCLKSEHRVL 356

Query: 361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG 420
           KKEAAWVLSNIAAGSVEHKQLI+ SEA+ LLL LLST+PFD++KEVAYVLGNLCV+P EG
Sbjct: 357 KKEAAWVLSNIAAGSVEHKQLIYCSEAVPLLLRLLSTAPFDLRKEVAYVLGNLCVAPAEG 416

Query: 421 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVER 480
            GKP LI EHLVSLV RGCL GFIDLVRS D EAARLGLQF+ELVLRGMPN EG KLVE+
Sbjct: 417 TGKPDLILEHLVSLVSRGCLPGFIDLVRSVDTEAARLGLQFIELVLRGMPNGEGPKLVEQ 476

Query: 481 EDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
           E+GI+AMERFQFHENEDLRNMANGLVD+YFGEDYGL E
Sbjct: 477 ENGIEAMERFQFHENEDLRNMANGLVDRYFGEDYGLTE 514

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548222|ref|XP_003542502.1| PREDICTED: importin subunit alpha-2-like isoform 1 [Glycine max]

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/522 (79%), Positives = 460/522 (88%), Gaps = 9/522 (1%)

Query: 1   MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADG---- 56
           MAD     ++RDPIKSSVGN AA RRRQ+AVTVGKERRESL+RAKR CRVG         
Sbjct: 1   MADSGFTSNRRDPIKSSVGNAAASRRRQHAVTVGKERRESLMRAKRFCRVGIDGGDGGDG 60

Query: 57  EVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFP 116
           EVS DSDM+++EEQSILE QTS+AVE LKSA+A+ GKGA++KRV AL+ELRRLLSR EFP
Sbjct: 61  EVSVDSDMLIEEEQSILESQTSAAVENLKSAIAFQGKGAVKKRVGALQELRRLLSRSEFP 120

Query: 117 PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG 176
           P+E+A+ AGA+P+LVQCL+FGSPDEQLLEAAWCLTNIAAG  EETKALLPALPLLIAHLG
Sbjct: 121 PVESAINAGAVPLLVQCLSFGSPDEQLLEAAWCLTNIAAGNPEETKALLPALPLLIAHLG 180

Query: 177 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 236
           EKS  PVAEQCAWALGNVAGEGEE RNVLL QGAL PLARMMLPN+GSTVRTAAWALSNL
Sbjct: 181 EKSYPPVAEQCAWALGNVAGEGEELRNVLLVQGALLPLARMMLPNRGSTVRTAAWALSNL 240

Query: 237 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 296
           IKGPDPK ATEL+++DG+LDAI+R LK+AD+EL TEVAWVVVYLSALSN+ATS+LVKS V
Sbjct: 241 IKGPDPKAATELVRIDGVLDAIIRQLKKADDELATEVAWVVVYLSALSNIATSMLVKSNV 300

Query: 297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE 356
           L+LLV +LATSNSLQL+IPVLRSLGNL+A DS  I     PG GITD VI VLVKCL  E
Sbjct: 301 LELLVHKLATSNSLQLMIPVLRSLGNLIASDSHAI-----PGLGITDNVIQVLVKCLNCE 355

Query: 357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416
           +RVLKKEA+WVLSNIAAGSVEHKQLI+SSEA+ +LL L S +PFDI+KEVAYVLGNLCVS
Sbjct: 356 NRVLKKEASWVLSNIAAGSVEHKQLIYSSEAVPVLLRLFSAAPFDIRKEVAYVLGNLCVS 415

Query: 417 PTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTK 476
           PT+G+ KP LI EHLVSLV +GCL GFIDLVRSADIEAARLGLQF+ELVLRGMPN +G K
Sbjct: 416 PTKGDDKPSLILEHLVSLVEKGCLPGFIDLVRSADIEAARLGLQFIELVLRGMPNGKGPK 475

Query: 477 LVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
           LVE+EDGI+AMERFQFHENEDLR MAN LVDKYFGEDYGLDE
Sbjct: 476 LVEQEDGIEAMERFQFHENEDLRTMANTLVDKYFGEDYGLDE 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784526|emb|CAN61727.1| hypothetical protein VITISV_032422 [Vitis vinifera]

 Score =  810 bits (2091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/535 (80%), Positives = 462/535 (86%), Gaps = 22/535 (4%)

Query: 1   MADDSLNHHKRDPIKSS-----------------VGNVAAQRRRQNAVTVGKERRESLVR 43
           MADD L  H+RDPIKSS                  GNVAA RRRQ A+TVGKERRE+LVR
Sbjct: 1   MADDGLASHRRDPIKSSGIFTFILTIVSLSLPSPFGNVAANRRRQQAITVGKERREALVR 60

Query: 44  AKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNAL 103
            KRLCRVG S D +V  D DMM+DEEQSILE QTSSAVEELKS V Y GKGAMQKRV+AL
Sbjct: 61  TKRLCRVGISGDSDVPVDGDMMIDEEQSILETQTSSAVEELKSTVIYQGKGAMQKRVSAL 120

Query: 104 RELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 163
           R+LRRLLSR EFPPIE ALKAGA+ VLVQCL+FGSPDEQLLEAAWCLTNIAAGK EETKA
Sbjct: 121 RDLRRLLSRSEFPPIEAALKAGAVSVLVQCLSFGSPDEQLLEAAWCLTNIAAGKPEETKA 180

Query: 164 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG 223
           LLPALPLLIAHLGEKSS PVAEQCAWALGNVAGEGEE RN+LLSQGALPPLARMM+PNKG
Sbjct: 181 LLPALPLLIAHLGEKSSPPVAEQCAWALGNVAGEGEELRNILLSQGALPPLARMMVPNKG 240

Query: 224 STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 283
           STVRTAAWALSNLIKGPDPK A+ELI++DG+LDAILRHL++ DEEL TEVAWVVVYLSAL
Sbjct: 241 STVRTAAWALSNLIKGPDPKAASELIQIDGVLDAILRHLRKGDEELATEVAWVVVYLSAL 300

Query: 284 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD 343
           S+ ATS+LVKS +LQLLVERLATSNSLQLLIPVLRSLGNL AG +S  +  LV GH +T 
Sbjct: 301 SDTATSILVKSBLLQLLVERLATSNSLQLLIPVLRSLGNLGAG-ASHATCXLVVGHEMT- 358

Query: 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIK 403
              A LVKCL SEHRVLKKEAAWVLSNIAAGS+EHK+LI+SSEA+ LLL LLST+PFDI+
Sbjct: 359 ---AALVKCLGSEHRVLKKEAAWVLSNIAAGSIEHKKLIYSSEAVPLLLRLLSTAPFDIR 415

Query: 404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME 463
           KEVAY LGNLCV  +EG GKP LI EHLVSLVGRGCL GFIDLVRSAD EAA+LGLQFME
Sbjct: 416 KEVAYALGNLCVVSSEGGGKPALILEHLVSLVGRGCLPGFIDLVRSADTEAAKLGLQFME 475

Query: 464 LVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
           LVLRGMPN EG KLVEREDGIDAMERFQFHEN DLRNMANGLVD YFGE+YGLDE
Sbjct: 476 LVLRGMPNGEGPKLVEREDGIDAMERFQFHENXDLRNMANGLVDTYFGEEYGLDE 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548224|ref|XP_003542503.1| PREDICTED: importin subunit alpha-2-like isoform 2 [Glycine max]

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/522 (78%), Positives = 457/522 (87%), Gaps = 4/522 (0%)

Query: 1   MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADG---- 56
           MAD     ++RDPIKSSVGN AA RRRQ+AVTVGKERRESL+RAKR CRVG         
Sbjct: 1   MADSGFTSNRRDPIKSSVGNAAASRRRQHAVTVGKERRESLMRAKRFCRVGIDGGDGGDG 60

Query: 57  EVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFP 116
           EVS DSDM+++EEQSILE QTS+AVE LKSA+A+ GKGA++KRV AL+ELRRLLSR EFP
Sbjct: 61  EVSVDSDMLIEEEQSILESQTSAAVENLKSAIAFQGKGAVKKRVGALQELRRLLSRSEFP 120

Query: 117 PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG 176
           P+E+A+ AGA+P+LVQCL+FGSPDEQLLEAAWCLTNIAAG  EETKALLPALPLLIAHLG
Sbjct: 121 PVESAINAGAVPLLVQCLSFGSPDEQLLEAAWCLTNIAAGNPEETKALLPALPLLIAHLG 180

Query: 177 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 236
           EKS  PVAEQCAWALGNVAGEGEE RNVLL QGAL PLARMMLPN+GSTVRTAAWALSNL
Sbjct: 181 EKSYPPVAEQCAWALGNVAGEGEELRNVLLVQGALLPLARMMLPNRGSTVRTAAWALSNL 240

Query: 237 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 296
           IKGPDPK ATEL+++DG+LDAI+R LK+AD+EL TEVAWVVVYLSALSN+ATS+LVKS V
Sbjct: 241 IKGPDPKAATELVRIDGVLDAIIRQLKKADDELATEVAWVVVYLSALSNIATSMLVKSNV 300

Query: 297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE 356
           L+LLV +LATSNSLQL+IPVLRSLGNL+A DS  I  +       +D VI VLVKCL  E
Sbjct: 301 LELLVHKLATSNSLQLMIPVLRSLGNLIASDSHAILLISDFTMTFSDNVIQVLVKCLNCE 360

Query: 357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416
           +RVLKKEA+WVLSNIAAGSVEHKQLI+SSEA+ +LL L S +PFDI+KEVAYVLGNLCVS
Sbjct: 361 NRVLKKEASWVLSNIAAGSVEHKQLIYSSEAVPVLLRLFSAAPFDIRKEVAYVLGNLCVS 420

Query: 417 PTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTK 476
           PT+G+ KP LI EHLVSLV +GCL GFIDLVRSADIEAARLGLQF+ELVLRGMPN +G K
Sbjct: 421 PTKGDDKPSLILEHLVSLVEKGCLPGFIDLVRSADIEAARLGLQFIELVLRGMPNGKGPK 480

Query: 477 LVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
           LVE+EDGI+AMERFQFHENEDLR MAN LVDKYFGEDYGLDE
Sbjct: 481 LVEQEDGIEAMERFQFHENEDLRTMANTLVDKYFGEDYGLDE 522

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145357578|ref|NP_195927.2| importin alpha isoform 9 [Arabidopsis thaliana] gi|332003170|gb|AED90553.1| importin alpha isoform 9 [Arabidopsis thaliana]

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/519 (76%), Positives = 455/519 (87%), Gaps = 1/519 (0%)

Query: 1   MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVS- 59
           MADD    ++RDPIKSSVGNVA QRRR+ AVTV KERRE LVRAKRLCRVGT+ D E + 
Sbjct: 1   MADDGSASNRRDPIKSSVGNVAGQRRRKQAVTVAKERRELLVRAKRLCRVGTNGDVEDAL 60

Query: 60  SDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIE 119
            +++MMVDEEQ ILE Q S +VEELKSAV Y GKGAMQKRV ALRELRRLLS+ EFPP+E
Sbjct: 61  VENEMMVDEEQPILEAQASKSVEELKSAVQYQGKGAMQKRVTALRELRRLLSKSEFPPVE 120

Query: 120 TALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKS 179
            AL+AGAIP+LVQCL+FGSPDEQLLE+AWCLTNIAAGK EETKALLPALPLLIAHLGEKS
Sbjct: 121 AALRAGAIPLLVQCLSFGSPDEQLLESAWCLTNIAAGKPEETKALLPALPLLIAHLGEKS 180

Query: 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239
           S+PVAEQCAWA+GNVAGEGE+ RNVLLSQGALPPLARM+ P+KGSTVRTAAWALSNLIKG
Sbjct: 181 SAPVAEQCAWAIGNVAGEGEDLRNVLLSQGALPPLARMIFPDKGSTVRTAAWALSNLIKG 240

Query: 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 299
           P+ K A +L+K+DG+LDAILRHLK+ DEE  TE+AW++VYLSALS++ATS+L+K G+LQL
Sbjct: 241 PESKAAAQLVKIDGILDAILRHLKKTDEETATEIAWIIVYLSALSDIATSMLLKGGILQL 300

Query: 300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359
           L++RLATS+SLQLLIPVLRSLGN VA D   +  +L+      + +I VL KCL+SEHRV
Sbjct: 301 LIDRLATSSSLQLLIPVLRSLGNFVAVDPKAVLTILIREQNTEESIIGVLAKCLRSEHRV 360

Query: 360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTE 419
           LKKEAAWVLSNIAAGS+EHK++IHS+E + LLL +LSTSPFDI+KEVAYVLGNLCV   E
Sbjct: 361 LKKEAAWVLSNIAAGSIEHKRMIHSTEVMPLLLRILSTSPFDIRKEVAYVLGNLCVESAE 420

Query: 420 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVE 479
           G+ KP++IQEHLVS+V  GCL GFI+LVRS DIEAARLGLQF+ELVLRGMPN EG KLVE
Sbjct: 421 GDRKPRIIQEHLVSIVSGGCLRGFIELVRSPDIEAARLGLQFIELVLRGMPNGEGPKLVE 480

Query: 480 REDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
            EDGIDAMERFQFHENE+LR MAN LVDKYFGEDYG+DE
Sbjct: 481 GEDGIDAMERFQFHENEELRVMANSLVDKYFGEDYGIDE 519

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810383|ref|XP_002873075.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297318912|gb|EFH49334.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/519 (76%), Positives = 450/519 (86%), Gaps = 1/519 (0%)

Query: 1   MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVS- 59
           MADD    ++RDPIKSSVG+VA QRRRQ AVTV KERRE LVRAKRLCRVGT+ D E S 
Sbjct: 1   MADDGSASNRRDPIKSSVGHVAGQRRRQQAVTVAKERRELLVRAKRLCRVGTNGDVEDSL 60

Query: 60  SDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIE 119
            +++MM+DEEQ ILE Q S +VEELKSAV Y GKGAMQKRV ALRELRR+LS+ EFPP+E
Sbjct: 61  VENEMMIDEEQPILEAQASKSVEELKSAVQYQGKGAMQKRVTALRELRRILSKSEFPPVE 120

Query: 120 TALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKS 179
            AL AGAIP+LVQCL+FGSPDEQLLE+AWCLTNIAAGK EETKALLPALPLLIAHLGEKS
Sbjct: 121 AALSAGAIPLLVQCLSFGSPDEQLLESAWCLTNIAAGKPEETKALLPALPLLIAHLGEKS 180

Query: 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239
           S+PVAEQCAWA+GNVAGEGE+ RNVLLSQGALP LARM+ P+KGSTVRTAAWALSNLIKG
Sbjct: 181 SAPVAEQCAWAIGNVAGEGEDLRNVLLSQGALPSLARMIFPDKGSTVRTAAWALSNLIKG 240

Query: 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 299
           P+ K A +L+KVDG+LDAI RHLK+ DEE  TE+AW++VYLSALS++ATS+L+K G+LQL
Sbjct: 241 PESKAAAQLVKVDGILDAIFRHLKKTDEETATEIAWIIVYLSALSDIATSMLLKGGILQL 300

Query: 300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359
           L+ERLA SNSLQLLIPVLRS+GN VA D   I  +L+      + +I VL KCL+SEHRV
Sbjct: 301 LIERLANSNSLQLLIPVLRSVGNFVAVDPKAILTILIREQNTEESIIGVLAKCLRSEHRV 360

Query: 360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTE 419
           LKKEAAWVLSNIAAGS+EHK++IHS+E + LLL LLSTSPFDI+KEVAYVLGNLCV   E
Sbjct: 361 LKKEAAWVLSNIAAGSIEHKRMIHSTEVMPLLLRLLSTSPFDIRKEVAYVLGNLCVESAE 420

Query: 420 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVE 479
           G+ KP +IQEHLVS+V  GCL GFI+LVRS DIEAARLGLQF+ELVLRGMPN EG KLVE
Sbjct: 421 GDRKPGIIQEHLVSIVRGGCLPGFIELVRSPDIEAARLGLQFIELVLRGMPNGEGPKLVE 480

Query: 480 REDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
            EDGIDAMERFQFHENE+LR MAN LVDKYFGEDYG+DE
Sbjct: 481 GEDGIDAMERFQFHENEELRVMANSLVDKYFGEDYGIDE 519

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448830|ref|XP_004142168.1| PREDICTED: importin subunit alpha-2-like [Cucumis sativus]

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/518 (76%), Positives = 463/518 (89%)

Query: 1   MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSS 60
           MAD SL   +RD IKSSVG+VAA RRRQ+A+ VGKERR+ LVRAKR CR+G         
Sbjct: 1   MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRAKRFCRIGIGDGDGDGV 60

Query: 61  DSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIET 120
           D++M++DEE SILE+QTSSAV+ELKSAVAY GKGAMQKR++ALRELRRLLSR EFPP+ET
Sbjct: 61  DNEMIMDEELSILEVQTSSAVDELKSAVAYQGKGAMQKRIHALRELRRLLSRSEFPPVET 120

Query: 121 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSS 180
           ALKAGA+ +LVQCL+FGSPDEQLLEAAWCLTNI AGK EETK+LLPA+PLLIAHLGE+SS
Sbjct: 121 ALKAGAVSLLVQCLSFGSPDEQLLEAAWCLTNIGAGKPEETKSLLPAIPLLIAHLGERSS 180

Query: 181 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 240
             VAEQCAWALGNVAGE +E RN+LLSQGAL PLARM+LPNKGS+V+TAAWALSNLIKGP
Sbjct: 181 LLVAEQCAWALGNVAGEEKELRNILLSQGALLPLARMLLPNKGSSVKTAAWALSNLIKGP 240

Query: 241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLL 300
           D + ATELI++DG+LDAI+RHL++AD+EL TEVAWV+VYLSALS+VA S+LVKS V+QLL
Sbjct: 241 DSRAATELIRIDGVLDAIIRHLRKADDELATEVAWVIVYLSALSDVAISILVKSEVVQLL 300

Query: 301 VERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL 360
           VERL+TSNSLQLLIPVLRSLGNLVA DS TIS +L+PG  IT  V+ VL+KCLKSEHRVL
Sbjct: 301 VERLSTSNSLQLLIPVLRSLGNLVAVDSHTISAILIPGSEITGSVLEVLIKCLKSEHRVL 360

Query: 361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG 420
           KKEA+WVLSNIAAGS+EHKQLI++S+ + LL+ LLS++PFD++KEVAYVLGNLCV+P + 
Sbjct: 361 KKEASWVLSNIAAGSMEHKQLIYTSDVVPLLIRLLSSAPFDVRKEVAYVLGNLCVAPNDS 420

Query: 421 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVER 480
           +GK KL+ E+LVSLVGRGCL GFIDLVRSAD EAARLG QF+E+VLRGMPN +G +LVER
Sbjct: 421 DGKAKLLVENLVSLVGRGCLVGFIDLVRSADTEAARLGFQFLEMVLRGMPNGDGPRLVER 480

Query: 481 EDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
           EDGI+AMERFQFHENE+LRNMAN LVDKYFGEDYGLDE
Sbjct: 481 EDGIEAMERFQFHENEELRNMANCLVDKYFGEDYGLDE 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503443|ref|XP_004162005.1| PREDICTED: importin subunit alpha-2-like [Cucumis sativus]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/522 (76%), Positives = 463/522 (88%), Gaps = 4/522 (0%)

Query: 1   MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSS 60
           MAD SL   +RD IKSSVG+VAA RRRQ+A+ VGKERR+ LVRAKR CR+G         
Sbjct: 1   MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRAKRFCRIGIGDGDGDGD 60

Query: 61  ----DSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFP 116
               D++M++DEE SILE+QTSSAV+ELKSAVAY GKGAMQKR++ALRELRRLLSR EFP
Sbjct: 61  GDGVDNEMIMDEELSILEVQTSSAVDELKSAVAYQGKGAMQKRIHALRELRRLLSRSEFP 120

Query: 117 PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG 176
           P+ETALKAGA+ +LVQCL+FGSPDEQLLEAAWCLTNI AGK EETK+LLPA+PLLIAHLG
Sbjct: 121 PVETALKAGAVSLLVQCLSFGSPDEQLLEAAWCLTNIGAGKPEETKSLLPAIPLLIAHLG 180

Query: 177 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 236
           E+SS  VAEQCAWALGNVAGE +E RN+LLSQGAL PLARM+LPNKGS+V+TAAWALSNL
Sbjct: 181 ERSSLLVAEQCAWALGNVAGEEKELRNILLSQGALLPLARMLLPNKGSSVKTAAWALSNL 240

Query: 237 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 296
           IKGPD + ATELI++DG+LDAI+RHL++AD+EL TEVAWV+VYLSALS+VA S+LVKS V
Sbjct: 241 IKGPDSRAATELIRIDGVLDAIIRHLRKADDELATEVAWVIVYLSALSDVAISILVKSEV 300

Query: 297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE 356
           +QLLVERL+TSNSLQLLIPVLRSLGNLVA DS TIS +L+PG  IT  V+ VL+KCLKSE
Sbjct: 301 VQLLVERLSTSNSLQLLIPVLRSLGNLVAVDSHTISAILIPGSEITGSVLEVLIKCLKSE 360

Query: 357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416
           HRVLKKEA+WVLSNIAAGS+EHKQLI++S+ + LL+ LLS++PFD++KEVAYVLGNLCV+
Sbjct: 361 HRVLKKEASWVLSNIAAGSMEHKQLIYTSDVVPLLIRLLSSAPFDVRKEVAYVLGNLCVA 420

Query: 417 PTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTK 476
           P + +GK KL+ E+LVSLVGRGCL GFIDLVRSAD EAARLG QF+E+VLRGMPN +G +
Sbjct: 421 PNDSDGKAKLLVENLVSLVGRGCLVGFIDLVRSADTEAARLGFQFLEMVLRGMPNGDGPR 480

Query: 477 LVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
           LVEREDGI+AMERFQFHENE+LRNMAN LVDKYFGEDYGLDE
Sbjct: 481 LVEREDGIEAMERFQFHENEELRNMANCLVDKYFGEDYGLDE 522

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
TAIR|locus:2143423	519	IMPA-9 "importin alpha isoform	1.0	0.998	0.705	3.6e-192
SGD|S000005133	542	SRP1 "Karyopherin alpha homolo	0.938	0.896	0.282	4.7e-48
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.920	0.884	0.295	4.2e-47
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.922	0.893	0.295	1.1e-46
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.907	0.883	0.303	6.2e-46
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.909	0.912	0.291	1e-45
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.922	0.888	0.298	1.3e-45
CGD|CAL0000730	543	orf19.5682 [Candida albicans (	0.915	0.872	0.274	5.6e-45
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.928	0.905	0.289	1.5e-44
GENEDB_PFALCIPARUM|PF08_0087	545	PF08_0087 "importin alpha, put	0.905	0.860	0.284	3.9e-44

TAIR|locus:2143423 IMPA-9 "importin alpha isoform 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1862 (660.5 bits), Expect = 3.6e-192, P = 3.6e-192
 Identities = 366/519 (70%), Positives = 419/519 (80%)

Query:     1 MADDSLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSS 60
             MADD    ++RDPIKSSVGNVA QRRR+ AVTV KERRE LVRAKRLCRVGT+ D E + 
Sbjct:     1 MADDGSASNRRDPIKSSVGNVAGQRRRKQAVTVAKERRELLVRAKRLCRVGTNGDVEDAL 60

Query:    61 -DSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIE 119
              +++MMVDEEQ ILE Q S +VEELKSAV Y GKGAMQKRV A             PP+E
Sbjct:    61 VENEMMVDEEQPILEAQASKSVEELKSAVQYQGKGAMQKRVTALRELRRLLSKSEFPPVE 120

Query:   120 TALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXIAHLGEKS 179
              AL+AGAIP+LVQCL+FGSPDEQLLE+AWCLTNIAAGK EETK         IAHLGEKS
Sbjct:   121 AALRAGAIPLLVQCLSFGSPDEQLLESAWCLTNIAAGKPEETKALLPALPLLIAHLGEKS 180

Query:   180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239
             S+PVAEQCAWA+GNVAGEGE+ RNVLLSQGALPPLARM+ P+KGSTVRTAAWALSNLIKG
Sbjct:   181 SAPVAEQCAWAIGNVAGEGEDLRNVLLSQGALPPLARMIFPDKGSTVRTAAWALSNLIKG 240

Query:   240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 299
             P+ K A +L+K+DG+LDAILRHLK+ DEE  TE+AW++VYLSALS++ATS+L+K G+LQL
Sbjct:   241 PESKAAAQLVKIDGILDAILRHLKKTDEETATEIAWIIVYLSALSDIATSMLLKGGILQL 300

Query:   300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359
             L++RLATS+SLQLLIPVLRSLGN VA D   +  +L+      + +I VL KCL+SEHRV
Sbjct:   301 LIDRLATSSSLQLLIPVLRSLGNFVAVDPKAVLTILIREQNTEESIIGVLAKCLRSEHRV 360

Query:   360 LKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTE 419
             LKKEAAWVLSNIAAGS+EHK+                  PFDI+KEVAYVLGNLCV   E
Sbjct:   361 LKKEAAWVLSNIAAGSIEHKRMIHSTEVMPLLLRILSTSPFDIRKEVAYVLGNLCVESAE 420

Query:   420 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVE 479
             G+ KP++IQEHLVS+V  GCL GFI+LVRS DIEAARLGLQF+ELVLRGMPN EG KLVE
Sbjct:   421 GDRKPRIIQEHLVSIVSGGCLRGFIELVRSPDIEAARLGLQFIELVLRGMPNGEGPKLVE 480

Query:   480 REDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
              EDGIDAMERFQFHENE+LR MAN LVDKYFGEDYG+DE
Sbjct:   481 GEDGIDAMERFQFHENEELRVMANSLVDKYFGEDYGIDE 519

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

SGD|S000005133 SRP1 "Karyopherin alpha homolog" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 149/527 (28%), Positives = 247/527 (46%)

Query:     9 HKRDPIKSSVGNVAAQ--RRRQNA--VTVGKERR-ESLVRAKRLCRVGTSADGEVSSDSD 63
             ++R   K+  G  +A   RRR++   V + K +R E+L + +        AD +   +S 
Sbjct:    16 YRRTNFKNK-GRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 74

Query:    64 MMVDEE-QSILEMQTSSAVEELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETAL 122
             +  D++  S L+ +     ++L S         MQ++++A             PPI+  +
Sbjct:    75 VSADQQFYSQLQQELPQMTQQLNS-------DDMQEQLSATVKFRQILSREHRPPIDVVI 127

Query:   123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSS 181
             +AG +P LV+ +    P+   LEAAW LTNIA+G   +TK         +   L    S 
Sbjct:   128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187

Query:   182 PVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241
              V EQ  WALGNVAG+  ++R+ +L   A+ P+  +   NK S +RTA W LSNL +G  
Sbjct:   188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247

Query:   242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLV 301
             P+P   +  V   L  + + +   D E   +  W + YLS     A   ++   + + LV
Sbjct:   248 PQPDWSV--VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305

Query:   302 ERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 361
             E L+  ++L +  P LR++GN+V G+      V+  G      V+  L   L S    +K
Sbjct:   306 ELLSHESTL-VQTPALRAVGNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIK 358

Query:   362 KEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGE 421
             KEA W +SNI AG+ E  Q                   +  KKE  + + N   + + G 
Sbjct:   359 KEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN---ASSGGL 415

Query:   422 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL---------RGMPNH 472
              +P +I+ +LVS   +GC+    DL+  AD     + L  +E +L         RG+  +
Sbjct:   416 QRPDIIR-YLVS---QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN 471

Query:   473 EGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDY-GLDE 518
             E    +E+  G++ +   Q +EN+ +   A  +++ YFGE+   +DE
Sbjct:   472 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDE 518

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=ISM

GO:0006612 "protein targeting to membrane" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006606 "protein import into nucleus" evidence=IEA;IMP

GO:0008565 "protein transporter activity" evidence=IEA;IDA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 153/518 (29%), Positives = 244/518 (47%)

Query:    10 KRDPIKSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
             +R+  K SV     +RRR+ N V + K +RE  ++ KR  R G +     S  S    D 
Sbjct:    12 RRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKR--REGFNP----SMASQPGQDF 65

Query:    69 EQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIP 128
               S+    T + +E ++  +A         ++ A             PPI   +++G +P
Sbjct:    66 SSSL---PTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVP 122

Query:   129 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQC 187
              +VQ L+     +   EAAW LTNIA+G  E T+         +   L   +S  V EQ 
Sbjct:   123 HIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQA 182

Query:   188 AWALGNVAGEGEEFRNVLLS-QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246
              WALGNVAG+  + R+ +LS +  +  LA+    +K S +R A W LSN  +G  P+PA 
Sbjct:   183 VWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGK-PQPAF 241

Query:   247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT 306
             E  +    L A+ R L   DEE+ T+ +W + YLS  +N     ++ +GV+  LV+ LA 
Sbjct:   242 EQ-QTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   307 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAA 365
               S  +LIP LR++GN+V GD      V      I+ Q +  L+  LK+ ++  +KKEA 
Sbjct:   301 P-SPSVLIPALRTIGNIVTGDDIQTQAV------ISSQALPGLLNLLKNTYKKSIKKEAC 353

Query:   366 WVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPK 425
             W +SNI AG+    Q                   F+IKKE  + + N     T G G   
Sbjct:   354 WTISNITAGNTSQIQEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNA----TSG-GN-- 406

Query:   426 LIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR--------GMPNHEG--T 475
                + +  LV +GC+    DL+   D     + L+ +E +L+        G   ++    
Sbjct:   407 --HDQIKFLVSQGCIRPLCDLLPCPDPRVVTVTLEGLENILKVGEAEKNLGNTGNDNLYA 464

Query:   476 KLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
             +++E  DG+D +E  Q H+N ++   A  +++ Y+  D
Sbjct:   465 QMIEDADGLDKIENLQSHDNNEIYEKAVKILESYWAAD 502

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 153/517 (29%), Positives = 243/517 (47%)

Query:    10 KRDPIKSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
             +R+  K +V     +RRR+ N V + K +RE  ++ KR  R G  A+ ++   +   V  
Sbjct:    12 RRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKR--REGLQAN-QLPQFAPSPVPA 68

Query:    69 EQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIP 128
               ++        +E L + V          ++ A             PPIE  + AG +P
Sbjct:    69 SSTV-----EKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVP 123

Query:   129 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQC 187
               V+ L      +   EAAW LTNIA+G  E TK         I   L    S  V EQ 
Sbjct:   124 RFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQA 183

Query:   188 AWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPAT 246
              WALGNVAG+    R+++L QGAL PL   +  + K S +R A W LSN  +G  P+P  
Sbjct:   184 VWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGK-PQPPF 242

Query:   247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT 306
             + ++    L A+ R +   DEE+ T+  W + YLS  +N     ++++GV+  LVE L  
Sbjct:   243 DQVRP--ALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVE-LLQ 299

Query:   307 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW 366
               S  +LIP LRS+GN+V GD      V+   HG    ++++L     +  + +KKEA W
Sbjct:   300 HQSPSVLIPALRSIGNIVTGDDLQTQCVI--SHGALLSLLSLLTH---NHKKSIKKEACW 354

Query:   367 VLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKL 426
              +SNI AG+ +  Q                   FDIKKE A+ + N     T G G P  
Sbjct:   355 TISNITAGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNA----TSG-GSPDQ 409

Query:   427 IQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR-G----MPNHEG-----TK 476
             I+     +V +G +    DL+   D     + L+ +E +L+ G    +  + G      +
Sbjct:   410 IKY----MVEQGVVKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNTGDVNFYAQ 465

Query:   477 LVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
             L++  +G++ +E  Q H+N ++   A  +++ Y+ E+
Sbjct:   466 LIDDAEGLEKIENLQSHDNSEIYEKAVKILETYWLEE 502

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 158/520 (30%), Positives = 240/520 (46%)

Query:    10 KRDPIKSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
             +R+  K +V     +RRR+ N V + K +RE  +  KR  R G  A     S S   VD+
Sbjct:    12 RRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKR--REGMQALQGFPSASAASVDK 69

Query:    69 EQSILEMQTSSAVEELKSAVA--YHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGA 126
             +           ++ LK  VA  +    A+Q  + +             PPIE  + AG 
Sbjct:    70 K-----------LDSLKDMVAGVWSDDPALQ--LESTTQFRKLLSIERSPPIEEVISAGV 116

Query:   127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAE 185
             +P  V+ L          EAAW LTNIA+G  + TK         I   L    S  V E
Sbjct:   117 VPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVRE 176

Query:   186 QCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKP 244
             Q  WALGNVAG+    R+++L  GAL PL   +  + K S +R A W LSN  +G  P+P
Sbjct:   177 QAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGK-PQP 235

Query:   245 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL 304
               + +K    L A+ R +   DEE+ T+  W + YLS  +N     ++++GV+  LVE L
Sbjct:   236 HFDQVKP--ALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVE-L 292

Query:   305 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKE 363
                +S  +LIP LR++GN+V GD      V+  G       +  L   L   H+  +KKE
Sbjct:   293 LLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSG------ALPCLANLLTQNHKKSIKKE 346

Query:   364 AAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGK 423
             A W +SNI AG+ +  Q                   FDIKKE A+ + N     T G G 
Sbjct:   347 ACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNA----TSG-GS 401

Query:   424 PKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR-GMPN----HEG---- 474
                  + +  LV +GC+    DL+   D     + L+ +E +L+ G       H G    
Sbjct:   402 ----HDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNY 457

Query:   475 -TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
               +L++  +G++ +E  Q H+N ++   A  +++ Y+ E+
Sbjct:   458 YAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE 497

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 153/524 (29%), Positives = 249/524 (47%)

Query:    10 KRDPIKSSVGNVAAQRRRQNA-VTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
             ++   K S+ +  ++R+R+ A +++ K +RE  +  KR   V  S   +V S  +  +++
Sbjct:     9 RKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLINQRLEQ 68

Query:    69 EQSIL-EMQTSSAVEELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAI 127
               S++ E+ + +    LKS  A+    +++K                 PPIE  +K G +
Sbjct:    69 LPSLVAEINSENPDLILKSTTAFRKLLSIEK----------------SPPIEEVIKTGIV 112

Query:   128 PVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXIAHLGEKSSSP---VA 184
             P LV+ L      +   EAAW LTNIA+G  E+T+         +  L    SSP   V 
Sbjct:   113 PRLVKFLYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVL--LLSSPHDDVR 170

Query:   185 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PN--KGSTVRTAAWALSNLIKGPD 241
             EQ  WALGN+AG+    R+++LS  ALPPL  ++  P   K S VR A W LSN  +G  
Sbjct:   171 EQAVWALGNIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGK- 229

Query:   242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLV 301
             P+P  E+++    L  + + +   DEE+  +  W + YLS  SN     ++ + V + +V
Sbjct:   230 PQPPFEIVRAS--LPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMV 287

Query:   302 ERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 361
             E L    ++ +  P LR++GN+V GD +    VL      + Q ++ L+  L+S  R ++
Sbjct:   288 ELLGHP-TIAVQTPALRTIGNIVTGDDNQTQIVL------SVQALSHLLNLLQSPKRAIR 340

Query:   362 KEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGE 421
             KEA W +SNI AG     Q                   F+I+KE A+ + N         
Sbjct:   341 KEACWTISNITAGDKNQIQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSC----- 395

Query:   422 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL-RGMPNHEGT----- 475
             G P+ I  H   LV +GC+    DL++ +D     + L+ +E +L  G    + T     
Sbjct:   396 GTPQQI--HF--LVSQGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKEAQVTGVNPY 451

Query:   476 -KLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
              K++E  DG+  +   Q H N+D     + ++  Y  ED   DE
Sbjct:   452 KKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTYL-EDEQEDE 494

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 152/509 (29%), Positives = 233/509 (45%)

Query:    15 KSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSIL 73
             K+ V    A+RRR+ N V + K +RE  +  KR  R G     ++   + +  D  Q   
Sbjct:    17 KTGVDADEARRRREDNLVEIRKNKREDSLLKKR--REGMMLQQQLPLGAGL--DGPQ--- 69

Query:    74 EMQTSSAVEELKSAVAYHGKGAM----QKRVNAXXXXXXXXXXXXXPPIETALKAGAIPV 129
                T++AVE+    +    +G      Q ++ A             PPI+  +KAG IP 
Sbjct:    70 ---TAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPR 126

Query:   130 LVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCA 188
              V+ L      +   EAAW LTN+A+G  + T+         I   L   +S  V EQ  
Sbjct:   127 FVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAV 186

Query:   189 WALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPATE 247
             WALGNVAG+    RN++L+ GAL PL   +  N K S +R A W LSN  +G   KP T 
Sbjct:   187 WALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRG---KPPTP 243

Query:   248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS 307
               +V   L  + + +   DEE+ T+  W + YLS   N     ++++GV   LVE L   
Sbjct:   244 FEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLG-H 302

Query:   308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAW 366
              S  +LIP LR++GN+V GD S    ++  G      V+  L   L   H+  +KKEA W
Sbjct:   303 QSPTVLIPALRTVGNIVTGDDSQTQFIIESG------VLPHLYNLLTQNHKKSIKKEACW 356

Query:   367 VLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKL 426
              +SNI AG+    +                   FDIKKE A+ + N     +  + +  +
Sbjct:   357 TISNITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLV 416

Query:   427 IQEHLVSLVGRG-CLSGFIDLVRSADIE-AARLGLQFMELVLRGMPNHEGTKLVEREDGI 484
              Q  +  L     C    I  V    +E   ++G    E+ L    N    +++E  DG+
Sbjct:   417 TQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYA-QIIEESDGL 475

Query:   485 DAMERFQFHENEDLRNMANGLVDKYFGED 513
             D +E  Q H+N ++   A  ++++Y+ E+
Sbjct:   476 DKVENLQSHDNNEIYEKAVKILERYWAEE 504

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

CGD|CAL0000730 orf19.5682 [Candida albicans (taxid:5476)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 139/507 (27%), Positives = 233/507 (45%)

Query:    24 QRRRQNAVTVGKERRESLVRAKR-LCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVE 82
             +RR  + V + K++RE ++  +R     G  ++ E   + +   DE Q   +++     +
Sbjct:    31 RRRETHQVDLRKQKREEVLAKRRNYANQGNESEDEEEYNPNANNDENQFYNKLK-----Q 85

Query:    83 ELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQ 142
             +L   +          ++ A             PPI+  +++G IP LV+ +    PD  
Sbjct:    86 DLPKMLEMIQAPDFDSQLAATVKFRQILSREHNPPIDLVIQSGVIPTLVEFMKEDHPDML 145

Query:   143 LLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEF 201
              LEAAW LTNIA+G   +T+         +   L    S  V EQ  WALGNVAG+  + 
Sbjct:   146 QLEAAWALTNIASGDSSQTRVVVEANAVPLFVQLLYSQSLEVKEQAIWALGNVAGDSSDN 205

Query:   202 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH 261
             R+ +LS  A+ P+ ++    K S +RTA W LSNL +G  P+P   +  V   +  + + 
Sbjct:   206 RDYVLSCNAMEPVLQLFNCTKMSLIRTATWTLSNLCRGKSPQPDWNI--VSQAIPTLGKL 263

Query:   262 LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 321
             +   D E   +  W V YLS  ++ A   ++ + +   LVE L   ++L +  P LR++G
Sbjct:   264 IYSVDAETLVDACWAVSYLSDGTSEAIQAVIDARIPHRLVELLGHESTL-VQTPALRAIG 322

Query:   322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQX 381
             N+V G       V+  G      V+  L   L S    ++KEA W +SNI AG+ +  Q 
Sbjct:   323 NIVTGSDYQTQIVINAG------VLPALAPLLNSTKDTIRKEACWTISNITAGTTDQIQA 376

Query:   382 XXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 441
                               +  KKE  + + N   + + G  KP  I+ +LVS   +GC+ 
Sbjct:   377 VIDANLIPQVIRLLIHGDYKTKKEACWAISN---ASSGGLTKPDQIR-YLVS---QGCIK 429

Query:   442 GFIDLVRSADIEAARLGLQFMELVLR-GMPNHEGTK--------LVEREDGIDAMERFQF 492
                DL+  AD +   + L  +E +L+ G  + E            +E   G++ +   Q 
Sbjct:   430 PLCDLLSVADSKIIEVTLDSLENILKMGEMDKEARNASVNEYALFIEEAGGMEKIFECQN 489

Query:   493 HENEDLRNMANGLVDKYFGEDYG-LDE 518
             + NE +   A G+++KYF +D G +D+
Sbjct:   490 NPNEKIYQKAFGIIEKYFSDDDGQIDD 516

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 148/512 (28%), Positives = 237/512 (46%)

Query:    10 KRDPIKSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
             +R+  K +V     +RRR+ N V + K +RE  ++ KR     + A G  +  +      
Sbjct:    12 RRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRF--TSSMAFGSATGQT------ 63

Query:    69 EQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIP 128
             EQ +     +   + L + VA         ++ A             PPI   +++G +P
Sbjct:    64 EQDL--SSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVP 121

Query:   129 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQC 187
              +V+ L+     +   EAAW LTNIA+G  E T          I   L   +S  V EQ 
Sbjct:   122 RVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQA 181

Query:   188 AWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPAT 246
              WALGNVAG+  + R+++LS GA+ PL      N K S +R A W LSN  +G  P PA 
Sbjct:   182 VWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPP-PAF 240

Query:   247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT 306
             E  +    L  + R ++  DEE+ T+  W + YLS  SN     ++++GV+  L++ L  
Sbjct:   241 E--QTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGH 298

Query:   307 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAA 365
             S S  +LIP LR++GN+V GD      VL        Q +  L+  LK+ ++  +KKEA 
Sbjct:   299 S-SPSVLIPALRTIGNIVTGDDLQTQMVL------DQQALPCLLNLLKNNYKKSIKKEAC 351

Query:   366 WVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPK 425
             W +SNI AG+ +  Q                   F++KKE A+ + N     T  + K  
Sbjct:   352 WTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFM 411

Query:   426 LIQEHLVSLVGRGCLSGFIDL-VRSADIEAARLGLQFMELVLR-GMPNHEG--TKLVERE 481
             + Q  +  L     L    DL V +  +EA    L   E     G    +    ++++  
Sbjct:   412 VSQGCIKPLCD---LLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEA 468

Query:   482 DGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
             +G++ +E  Q H+N D+ + A  +++ ++ ED
Sbjct:   469 EGLEKIENLQSHDNNDIYDKAVKILETFWTED 500

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GENEDB_PFALCIPARUM|PF08_0087 PF08_0087 "importin alpha, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 145/510 (28%), Positives = 244/510 (47%)

Query:    24 QRRRQNAVT-VGKERRESLVRAKR---LCRVGTSADGEVS------SDSDMMVDEEQSIL 73
             +R+R++ V  + K++RE  + +KR   +  +G   +   +      + +D   D   +  
Sbjct:    20 RRKREDLVVQIRKQQRECQLESKRAMVMANIGFEENNTYNLNYAKGNQNDSTNDSIYNTS 79

Query:    74 EMQTSSAVEELKS----AVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPV 129
                +S+ +E LK     A+       + + +N+             PPI+  + +G +P 
Sbjct:    80 SNNSSNTLEMLKKIPTLAIGVRSNEYVTQ-LNSTRELRKLLSIEKGPPIQEVINSGVVPY 138

Query:   130 LVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXX-XIAHLGEKSSSPVAEQCA 188
             +V+ L +    +   EAAW +TNIA+G QE+TK          +  L       V EQ  
Sbjct:   139 IVEFLKYDDKTDLQFEAAWVITNIASGSQEQTKVVIDNNAVPHLVRLLSSEKEDVCEQAV 198

Query:   189 WALGNVAGEGEEFRNVLLSQGALPPLARMM-LPNKGSTVRTAAWALSNLIKGPDPKPATE 247
             WALGN+AG+  E R  +L+Q +LP L +++   +K + +R AAW LSNL +G   KPA +
Sbjct:   199 WALGNIAGDSAECREYVLNQNSLPLLLKILRTSHKRTLIRNAAWTLSNLCRG---KPAPK 255

Query:   248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS 307
                V   L  +   +   DEE+ T+  W + YLS  SN   + ++ +GV + +VE L+  
Sbjct:   256 FEIVSKALPTLAALIYNDDEEILTDACWTLSYLSDGSNENINSVLDAGVAERVVELLSHC 315

Query:   308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV 367
             + L +  P LR++GN+V GD    +DV+V    +  Q ++ L   L S  + +KKEA W 
Sbjct:   316 SFL-VQTPALRTVGNIVTGDDLQ-TDVVVKLGAV--QKLSCL---LNSSKKSIKKEACWA 368

Query:   368 LSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLI 427
             LSNI AG++   Q                   F+++KE A+ + N         G  +L 
Sbjct:   369 LSNITAGNISQIQAVIDNNVIPQLINILMKEDFEVRKEAAWAISNA------SSGGSELQ 422

Query:   428 QEHLVSLVGRGCLSGFIDLVRSADIEAARL-GLQ-FMEL----VLR-GMPNHEGTKLVER 480
              E+LV       LS  +D V  A+I +  L GL+  +E+     LR  +P +    L E 
Sbjct:   423 IEYLVECGAIHSLSNLLD-VEDANIISVTLEGLENILEMGENKKLRDNLPTNPYVHLFEE 481

Query:   481 EDGIDAMERFQFHENEDLRNMANGLVDKYF 510
              D +  ++  Q  + +++ N A  ++ KYF
Sbjct:   482 CDSVHKIDALQDRKVDNICNKAWKILYKYF 511

GO:0005643 "nuclear pore" evidence=ISS

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02821	IMA1_YEAST	No assigned EC number	0.3015	0.8976	0.8579	yes	no
Q9FYP9	IMA2_ORYSJ	No assigned EC number	0.6556	0.9884	0.9696	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.3055	0.9034	0.9069	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00160794 hypothetical protein (522 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	518
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	6e-70
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-18
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-15
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-12
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-10
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-10
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-08
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.001
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.003

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  232 bits (593), Expect = 6e-70
 Identities = 152/531 (28%), Positives = 244/531 (45%), Gaps = 51/531 (9%)

Query: 6   LNHHKRDPIKSSVGNVAAQRRRQ---NAVTVGKERRESLVRAKR-LCRVGTSADGEVSSD 61
           +   +R   K      A + RR+     V + K++RE L+  +R L  V   A+      
Sbjct: 6   VPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPM 65

Query: 62  SDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETA 121
                 E   + +   S  +E+   AV                + R+LLS+   PPI+  
Sbjct: 66  EQQFYSELPQLTQQLFSDDIEQQLQAVY---------------KFRKLLSKETSPPIQPV 110

Query: 122 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKS 179
           + AG +P  V+ +     D    EAAW LTNIA+G  ++TK ++   A+PL I  L   +
Sbjct: 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS-T 169

Query: 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK--GSTVRTAAWALSNLI 237
              V EQ  WALGN+AG+ E  R+ +L  GAL PL  ++L +    S +R A W LSNL 
Sbjct: 170 EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229

Query: 238 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVL 297
           +G +P P    I     L  + + +   D E+  +  W + YLS   N     ++  G+ 
Sbjct: 230 RGKNPPPDWSNISQ--ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIP 287

Query: 298 QLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH 357
             LVE L +  S ++  P LRS+GN+V G       ++  G       +      L S  
Sbjct: 288 GRLVELL-SHESAKIQTPALRSVGNIVTGSDDQTQVIINCG------ALKAFRSLLSSPK 340

Query: 358 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 417
             ++KEA W +SNI AG+ E  Q +  +  +  L+HLLS++ + IKKE  + + N     
Sbjct: 341 ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT--- 397

Query: 418 TEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG--------- 468
           + G  +P +I+     LV +G +    DL+   D +   + L  +E +L+          
Sbjct: 398 SGGLNRPDIIR----YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG 453

Query: 469 -MPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518
              N      VE+  G+DA+   Q   N  + + A  +++K+FGE+  +DE
Sbjct: 454 KNIN-IYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDE 503

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPA--LPLLIAHLGEKSS 180
           +AG +P LV  L+    + Q  EAAW L+N++AG  +  +A++ A  LP L+  L  +  
Sbjct: 5   QAGGLPALVSLLSSSDENVQR-EAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE 63

Query: 181 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI 237
             V +   WAL N+A   E+ + ++L  G +P L  ++  +     + A  ALSNL 
Sbjct: 64  E-VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
            ++++G L  LV  L +S+   +      +L NL AG++  I  V+  G       +  L
Sbjct: 2   AVIQAGGLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAG------GLPAL 54

Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV 409
           V+ LKSE   + K A W L N+AAG  ++K ++  +  +  L++LL +S  DI+K     
Sbjct: 55  VQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114

Query: 410 LGNLC 414
           L NL 
Sbjct: 115 LSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 7/127 (5%)

Query: 247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT 306
           E +   G L A++  L  +DE +  E AW +  LSA +N     +V++G L  LV+ L  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-K 59

Query: 307 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW 366
           S   +++   L +L NL AG       VL  G       +  LV  L S +  ++K A  
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAG------GVPKLVNLLDSSNEDIQKNATG 113

Query: 367 VLSNIAA 373
            LSN+A+
Sbjct: 114 ALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 23/75 (30%), Positives = 40/75 (53%)

Query: 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 404
            +  LV  L S    +++EAAW LSN++AG+ ++ Q +  +  L  L+ LL +   ++ K
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 405 EVAYVLGNLCVSPTE 419
              + L NL   P +
Sbjct: 68  AALWALRNLAAGPED 82

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 204 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK 263
            ++  G LP L  ++  +  +  R AAWALSNL  G +      +++  G L A+++ LK
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEA-GGLPALVQLLK 59

Query: 264 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN 308
             DEE+     W +  L+A       +++++G +  LV  L +SN
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSN 104

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 226
            LP L++ L   S   V  + AWAL N++    +    ++  G LP L +++       V
Sbjct: 8   GLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVV 66

Query: 227 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 277
           + A WAL NL  GP+      ++   G +  ++  L  ++E++       +
Sbjct: 67  KAALWALRNLAAGPEDN--KLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 101 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAAGKQE 159
            A   L  L +      I+  ++AG +P LVQ L   S DE++++ A W L N+AAG ++
Sbjct: 26  EAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLL--KSEDEEVVKAALWALRNLAAGPED 82

Query: 160 ETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVA 195
               +L    +P L+  L + S+  + +    AL N+A
Sbjct: 83  NKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAA 155
              +  ++AGA+P LVQ L   SPDE++ E AAW L+N+AA
Sbjct: 3   ENKQAVIEAGAVPPLVQLL--SSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAA 155
              +  + AG +P LV+ L   S DE+++ EAAW L+N+++
Sbjct: 3   ENKQAVVDAGGLPALVELL--KSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.7 bits (86), Expect = 9e-04
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373
            +  LV+ L S    +++EAAW LSN+AA
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 199 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 236
            E +  ++  GA+PPL +++          AAWALSNL
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 181 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 236
             V E  A ALG +AG G E     + +  LP L  ++  +       AAWAL  +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	518
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.93
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.85
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.85
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.81
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.79
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.7
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.69
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.67
PRK09687	280	putative lyase; Provisional	99.65
PRK09687	280	putative lyase; Provisional	99.64
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.63
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.56
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.52
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.5
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.49
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.49
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.49
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.48
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.48
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.47
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.41
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.4
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.36
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.36
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.36
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.34
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.32
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.27
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.26
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.2
PTZ00429	746	beta-adaptin; Provisional	99.2
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.18
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.17
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.14
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.12
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.04
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.95
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.95
PTZ00429	746	beta-adaptin; Provisional	98.9
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.81
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.8
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.78
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.76
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.76
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.75
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.73
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.71
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.71
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.68
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.64
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.64
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.61
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.53
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.52
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.48
TIGR02270	410	conserved hypothetical protein. Members are found	98.42
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.37
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.37
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.35
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.34
COG5369	743	Uncharacterized conserved protein [Function unknow	98.3
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.25
TIGR02270	410	conserved hypothetical protein. Members are found	98.24
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.19
COG5369	743	Uncharacterized conserved protein [Function unknow	98.16
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.15
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.14
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.11
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.1
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.1
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.06
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.05
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.04
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.04
PF05536	543	Neurochondrin: Neurochondrin	98.04
PF05536	543	Neurochondrin: Neurochondrin	98.03
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.94
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.93
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.93
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.91
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.89
KOG0567	289	consensus HEAT repeat-containing protein [General	97.87
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.84
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.84
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.84
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.83
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.82
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.81
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.79
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.78
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.78
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.76
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.75
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.73
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.71
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.69
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.67
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.65
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.64
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.61
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.58
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.57
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.55
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.52
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.51
KOG0567	289	consensus HEAT repeat-containing protein [General	97.47
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.46
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.44
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.44
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.41
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.4
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.35
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.19
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.19
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.15
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.12
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.07
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.03
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.02
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.85
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.85
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.81
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.81
PF05004	309	IFRD: Interferon-related developmental regulator (	96.74
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.74
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.63
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.62
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.61
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.56
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.53
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.52
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.5
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.44
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.36
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.36
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.31
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.28
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.2
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.16
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.15
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.11
KOG2734	536	consensus Uncharacterized conserved protein [Funct	96.07
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.04
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.04
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.99
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.94
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.81
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.73
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.56
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.51
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.5
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.48
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.44
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.41
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.25
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.24
KOG2956	516	consensus CLIP-associating protein [General functi	95.22
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.19
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.16
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	95.1
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.07
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.03
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.93
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.93
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	94.79
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.66
KOG0414	1251	consensus Chromosome condensation complex Condensi	94.6
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.57
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.55
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.48
PF05004	309	IFRD: Interferon-related developmental regulator (	94.47
KOG2062	929	consensus 26S proteasome regulatory complex, subun	94.46
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.43
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.37
KOG0414	1251	consensus Chromosome condensation complex Condensi	94.35
KOG1243	690	consensus Protein kinase [General function predict	94.16
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.0
COG5656	970	SXM1 Importin, protein involved in nuclear import	93.96
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.77
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	93.75
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.7
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.57
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	93.52
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.5
KOG2025	892	consensus Chromosome condensation complex Condensi	93.4
PRK14707	2710	hypothetical protein; Provisional	93.32
KOG3036	293	consensus Protein involved in cell differentiation	93.32
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.31
KOG3036	293	consensus Protein involved in cell differentiation	93.18
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	92.99
COG5656	970	SXM1 Importin, protein involved in nuclear import	92.94
KOG2956	516	consensus CLIP-associating protein [General functi	92.91
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	92.64
PRK14707	2710	hypothetical protein; Provisional	92.56
COG5116	926	RPN2 26S proteasome regulatory complex component [	92.39
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.06
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	91.91
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	91.77
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	91.61
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	91.58
KOG4653	982	consensus Uncharacterized conserved protein [Funct	91.53
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	91.52
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	91.36
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	91.11
KOG2032	533	consensus Uncharacterized conserved protein [Funct	90.98
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	90.93
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	90.52
COG5098	1128	Chromosome condensation complex Condensin, subunit	90.39
COG5098	1128	Chromosome condensation complex Condensin, subunit	90.23
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	89.72
KOG2032	533	consensus Uncharacterized conserved protein [Funct	89.45
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	89.17
KOG1243	690	consensus Protein kinase [General function predict	89.02
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	88.83
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	88.67
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	88.45
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	88.11
KOG2137	700	consensus Protein kinase [Signal transduction mech	87.89
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	87.44
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	86.88
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	86.08
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	86.01
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	85.43
PF11229	589	DUF3028: Protein of unknown function (DUF3028); In	85.4
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	84.88
KOG2137	700	consensus Protein kinase [Signal transduction mech	84.72
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	84.71
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	83.53
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	83.02
KOG2025	892	consensus Chromosome condensation complex Condensi	82.83
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	82.63
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	82.63
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	82.36
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	81.34
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	81.21
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	80.95
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	80.89

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.7e-105  Score=733.06  Aligned_cols=487  Identities=30%  Similarity=0.492  Sum_probs=440.7

Q ss_pred             CCCCccCcccccccccccC--chHHhhhH-HHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHHhhh
Q 010080            1 MADDSLNHHKRDPIKSSVG--NVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQT   77 (518)
Q Consensus         1 ~~~~~~~~~r~~~~k~~~~--~~~~~rr~-~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (518)
                      |.++|.|++||.+||.+|.  .+++|||| +++++|||+||||.|.|||+. ++..++.+++.    .+-++        
T Consensus         1 ~~srf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl-~dv~e~a~ss~----i~meq--------   67 (526)
T COG5064           1 STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNL-ADVSEEAESSF----IPMEQ--------   67 (526)
T ss_pred             CCcccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccchhhhcc----CchhH--------
Confidence            5789999999999998864  45555555 599999999999999999975 33333332110    01111        


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010080           78 SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK  157 (518)
Q Consensus        78 ~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~  157 (518)
                       ....+++++.+.+.|+|.+.++.|+..||++||.+..||++.+|++|++|++|+||.....+.++|||+|+|||||+|+
T Consensus        68 -q~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt  146 (526)
T COG5064          68 -QFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT  146 (526)
T ss_pred             -HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence             1235778888888899999999999999999999999999999999999999999976666788999999999999999


Q ss_pred             hHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHH
Q 010080          158 QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWAL  233 (518)
Q Consensus       158 ~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L  233 (518)
                      ..+++.++  |+||.|+++|.+ ++.+|+++++|+|||||+|++.+|++++++|++.+++.++.+.  +.++.|+++|+|
T Consensus       147 t~QTkvVvd~~AVPlfiqlL~s-~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL  225 (526)
T COG5064         147 TQQTKVVVDAGAVPLFIQLLSS-TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL  225 (526)
T ss_pred             ccceEEEEeCCchHHHHHHHcC-chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence            99999998  799999999988 7899999999999999999999999999999999999999866  569999999999


Q ss_pred             HHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccch
Q 010080          234 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL  313 (518)
Q Consensus       234 ~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~  313 (518)
                      +|||++++|+|....+  ...+|.|.+++.+.|++++.+|||+++||++++.+.++.+++.|..++|+++| .|++..++
T Consensus       226 SNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL-s~~sa~iq  302 (526)
T COG5064         226 SNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQ  302 (526)
T ss_pred             HHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh-cCcccccc
Confidence            9999999999887764  58999999999999999999999999999999999999999999999999999 58999999


Q ss_pred             hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHH
Q 010080          314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLH  393 (518)
Q Consensus       314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~  393 (518)
                      +|++|.+|||++|+|.|++.+|++|      +++.+..+|.+++..+|++|||+||||++|+.+++|++++++++|+|++
T Consensus       303 tPalR~vGNIVTG~D~QTqviI~~G------~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~  376 (526)
T COG5064         303 TPALRSVGNIVTGSDDQTQVIINCG------ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH  376 (526)
T ss_pred             CHHHHhhcCeeecCccceehheecc------cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHH
Confidence            9999999999999999999999985      9999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC--
Q 010080          394 LLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN--  471 (518)
Q Consensus       394 lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~--  471 (518)
                      +|++.+++++||||||++|.+++..   +.|    +++++|+++|+|++||++|...|.+++.++|++++++|+.++.  
T Consensus       377 lls~ae~k~kKEACWAisNatsgg~---~~P----D~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~  449 (526)
T COG5064         377 LLSSAEYKIKKEACWAISNATSGGL---NRP----DIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR  449 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccc---CCc----hHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHH
Confidence            9999999999999999999988532   344    7889999999999999999999999999999999999986642  


Q ss_pred             -------CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCCCC
Q 010080          472 -------HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE  518 (518)
Q Consensus       472 -------~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~~~  518 (518)
                             +.|..++|++||++.|+.||.+.|.+||.+|+.||++||++||+.||
T Consensus       450 ~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~  503 (526)
T COG5064         450 LRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDE  503 (526)
T ss_pred             HhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhh
Confidence                   24678999999999999999999999999999999999999998765

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.6e-97  Score=731.96  Aligned_cols=478  Identities=33%  Similarity=0.545  Sum_probs=425.6

Q ss_pred             CccCcccccccccccCchH--HhhhHHHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHHhhhHHHH
Q 010080            4 DSLNHHKRDPIKSSVGNVA--AQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAV   81 (518)
Q Consensus         4 ~~~~~~r~~~~k~~~~~~~--~~rr~~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (518)
                      ++....|+++||+++.+.+  ||||+++.|++||+||||.|.|||+. ......++     ..+.+  +        ...
T Consensus         2 ~~~~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~-~~~~~~~~-----~~~~~--~--------~~~   65 (514)
T KOG0166|consen    2 RGSSNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRND-EEELMLDE-----LLSDS--Q--------SQA   65 (514)
T ss_pred             CchhHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhh-hhhccccc-----ccchh--H--------HHh
Confidence            3456788899997764443  44455699999999999999999961 10000000     01100  1        011


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      .....+++++.|+++..++.|+..+|+++|.+++||++.++.+|+||.||++|..++++.+|+||+|+|||||+|+++++
T Consensus        66 ~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T  145 (514)
T KOG0166|consen   66 SNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT  145 (514)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence            22455566667999999999999999999999999999999999999999999988888899999999999999999999


Q ss_pred             HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC-hhHHHHHHHHHHHhhc
Q 010080          162 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-GSTVRTAAWALSNLIK  238 (518)
Q Consensus       162 ~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nL~~  238 (518)
                      +.++  |+||.|+.+|.+ ++..|+++|+|+||||++|++.+|++++.+|++++|+.++..++ ..+.++++|+|+|||+
T Consensus       146 ~~vv~agavp~fi~Ll~s-~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr  224 (514)
T KOG0166|consen  146 KVVVDAGAVPIFIQLLSS-PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR  224 (514)
T ss_pred             cccccCCchHHHHHHhcC-CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence            9999  799999999998 79999999999999999999999999999999999999999765 5899999999999999


Q ss_pred             CCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhh
Q 010080          239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR  318 (518)
Q Consensus       239 ~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~  318 (518)
                      +++|.|.++.  ...++|.|..++++.|++++.++||+|+||++++++.++++++.|+++.|+++|. +.+..++.||+|
T Consensus       225 gk~P~P~~~~--v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~-~~~~~v~~PaLR  301 (514)
T KOG0166|consen  225 GKNPSPPFDV--VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG-HSSPKVVTPALR  301 (514)
T ss_pred             CCCCCCcHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc-CCCcccccHHHh
Confidence            9988877665  4699999999999999999999999999999999999999999999999999994 889999999999


Q ss_pred             hhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC
Q 010080          319 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST  397 (518)
Q Consensus       319 ~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~  397 (518)
                      ++|||++|++.||+.++++|      ++|.|..++. ++..+++++|||+||||++|+++|+++++++|++|.|+++|++
T Consensus       302 aiGNIvtG~d~QTq~vi~~~------~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~  375 (514)
T KOG0166|consen  302 AIGNIVTGSDEQTQVVINSG------ALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT  375 (514)
T ss_pred             hccceeeccHHHHHHHHhcC------hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence            99999999999999999874      9999999998 6667899999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC------
Q 010080          398 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN------  471 (518)
Q Consensus       398 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~------  471 (518)
                      +++++||||+|||+|++.+     |+    .+|+.||++.|+|++||++|..+|++++.++|++|++|++.++.      
T Consensus       376 ~ef~~rKEAawaIsN~ts~-----g~----~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~  446 (514)
T KOG0166|consen  376 AEFDIRKEAAWAISNLTSS-----GT----PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT  446 (514)
T ss_pred             cchHHHHHHHHHHHhhccc-----CC----HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999874     45    48889999999999999999999999999999999999986532      


Q ss_pred             CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCC
Q 010080          472 HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGL  516 (518)
Q Consensus       472 ~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~  516 (518)
                      +++..+||++||+++||.||+|+|.+||++|.+||++||++|+++
T Consensus       447 n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~  491 (514)
T KOG0166|consen  447 NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDE  491 (514)
T ss_pred             cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCccc
Confidence            466799999999999999999999999999999999999997554

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=3.2e-43  Score=396.43  Aligned_cols=404  Identities=21%  Similarity=0.178  Sum_probs=337.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHh
Q 010080           85 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL  164 (518)
Q Consensus        85 ~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v  164 (518)
                      +.++..+.++++..+.+|+..+.++.+... .++..+++.|+||.|+++|+++++...+.+|+|+|+||+++++++++.+
T Consensus       192 p~LV~LLsS~d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~I  270 (2102)
T PLN03200        192 DILVKLLSSGNSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAI  270 (2102)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            334445568999999999998877655533 3678899999999999999876656778889999999999999999999


Q ss_pred             c--CChHHHHHhhcCCC--------CHHHHHHHHHHHHhhhCCChh-----------hHHHH---HhcCChhHHHhhhCC
Q 010080          165 L--PALPLLIAHLGEKS--------SSPVAEQCAWALGNVAGEGEE-----------FRNVL---LSQGALPPLARMMLP  220 (518)
Q Consensus       165 ~--~~v~~Lv~lL~~~~--------~~~v~~~a~~~L~nla~d~~~-----------~r~~~---~~~g~i~~L~~ll~~  220 (518)
                      +  |++|.|+.++.++.        +..++++|+|+|+|||++.+.           .|+..   ...|++++++.+++.
T Consensus       271 v~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~  350 (2102)
T PLN03200        271 ADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDS  350 (2102)
T ss_pred             HHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCC
Confidence            8  79999999997522        245699999999999997544           33322   456889999998886


Q ss_pred             CChhHH----HHHHHHHHHhhcCCCCCchhh-----------------HHHhhchHHHHHHHhccCChhHHHHHHHHHHH
Q 010080          221 NKGSTV----RTAAWALSNLIKGPDPKPATE-----------------LIKVDGLLDAILRHLKRADEELTTEVAWVVVY  279 (518)
Q Consensus       221 ~~~~~~----~~a~~~L~nL~~~~~~~~~~~-----------------~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~  279 (518)
                      ++....    ++++|+|.+||++++|.+..+                 .+...++++.|+.+|...+.+++.+++|+|.|
T Consensus       351 ~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~  430 (2102)
T PLN03200        351 SAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSS  430 (2102)
T ss_pred             chhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHH
Confidence            644333    478899999999877665221                 23345778899999999999999999999999


Q ss_pred             hhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080          280 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV  359 (518)
Q Consensus       280 L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~  359 (518)
                      |++++++.++.+.+.|+++.|+++|. +++..++.+++++|+|++.+++++++.++++      |++|.|+++|.+++..
T Consensus       431 L~~~~~e~~~aIi~~ggIp~LV~LL~-s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea------GaIP~LV~LL~s~~~~  503 (2102)
T PLN03200        431 LCCGKGGLWEALGGREGVQLLISLLG-LSSEQQQEYAVALLAILTDEVDESKWAITAA------GGIPPLVQLLETGSQK  503 (2102)
T ss_pred             HhCCCHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------CCHHHHHHHHcCCCHH
Confidence            99998999999999999999999995 7788999999999999999998888888876      5999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHH-hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC
Q 010080          360 LKKEAAWVLSNIAAGSVEHKQLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG  438 (518)
Q Consensus       360 i~~~a~~~Lsnl~~~~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g  438 (518)
                      ++++|+|+|+||+.++ ++++.++ ++|++|+|+++|++++++++++|+|+|+|++.+.     .    .+         
T Consensus       504 iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~-----d----~~---------  564 (2102)
T PLN03200        504 AKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA-----D----AA---------  564 (2102)
T ss_pred             HHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc-----c----hh---------
Confidence            9999999999999865 5556655 7899999999999999999999999999998742     1    12         


Q ss_pred             chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcc-hhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCC
Q 010080          439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG-TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYG  515 (518)
Q Consensus       439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~-~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~  515 (518)
                      .+++|+++|.++++.++..++++|.+|+........ .......||++.|.+|+.|+++++|+.|..+|.+||....+
T Consensus       565 ~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence            348899999999999999999999999876543211 22344679999999999999999999999999999986644

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-40  Score=329.53  Aligned_cols=363  Identities=21%  Similarity=0.329  Sum_probs=315.2

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHH
Q 010080          127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  203 (518)
Q Consensus       127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  203 (518)
                      .+.+++.+.+++ ...+++|...+.-+.+... .....++  |.||.|+..|....++.++..|+|+|.|||..+.+.-.
T Consensus        68 ~~~~~~~~~S~~-~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~  146 (514)
T KOG0166|consen   68 LELMLAALYSDD-PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK  146 (514)
T ss_pred             hHHHHHHHhCCC-HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence            667777777766 4457888888887764432 2344444  89999999998767899999999999999999999999


Q ss_pred             HHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh-hHHHHHHHHHHHhhc
Q 010080          204 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSA  282 (518)
Q Consensus       204 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~  282 (518)
                      .+++.|++|.++.++.+++..+++.|+|+|+|++..  ...+++.+...|+++.|+.++...+. .++..+.|+|+|||.
T Consensus       147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd--s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr  224 (514)
T KOG0166|consen  147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD--SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR  224 (514)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC--ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999954  34678888899999999999998776 788999999999999


Q ss_pred             CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080          283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  362 (518)
Q Consensus       283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~  362 (518)
                      +.+..-..-.-..++|.|..++ .+.+.+++..|||++++++.+.++.++.++++|      ++|.|+.+|.+.+..++.
T Consensus       225 gk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g------vv~~LV~lL~~~~~~v~~  297 (514)
T KOG0166|consen  225 GKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAG------VVPRLVDLLGHSSPKVVT  297 (514)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcc------chHHHHHHHcCCCccccc
Confidence            8754444344457799999998 689999999999999999999999999999864      999999999999999999


Q ss_pred             HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchH
Q 010080          363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS  441 (518)
Q Consensus       363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~  441 (518)
                      .|..+++||++|++.+.+.++++|++|.|..+|. +....+++||||+|+|++.+      +    .+|++++++.|++|
T Consensus       298 PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG------~----~~qiqaVida~l~p  367 (514)
T KOG0166|consen  298 PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG------N----QEQIQAVIDANLIP  367 (514)
T ss_pred             HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC------C----HHHHHHHHHcccHH
Confidence            9999999999999999999999999999999998 56667999999999999873      4    58999999999999


Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          442 GFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       442 ~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                      .|+.+|...|-++++.|.++|.|+..++.. .-...+.+.|.+..+.+|..-.+..+...+..-++..+
T Consensus       368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~~-~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil  435 (514)
T KOG0166|consen  368 VLINLLQTAEFDIRKEAAWAISNLTSSGTP-EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENIL  435 (514)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhhcccCCH-HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999877642 23456778999999999988888888777776666554

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.8e-39  Score=366.14  Aligned_cols=409  Identities=19%  Similarity=0.193  Sum_probs=349.2

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-
Q 010080           87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-  165 (518)
Q Consensus        87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-  165 (518)
                      ++..+.+.+.+.|..++..|+.+ +.+.+..++.+++.|++|.|+++|.+++ ...|..|+|+|.|++.++++++..++ 
T Consensus       409 LV~LL~~~~~evQ~~Av~aL~~L-~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIie  486 (2102)
T PLN03200        409 LVGLITMATADVQEELIRALSSL-CCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITA  486 (2102)
T ss_pred             hhhhhccCCHHHHHHHHHHHHHH-hCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33445678899999999999995 5444566788999999999999999765 56778899999999999998998888 


Q ss_pred             -CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCc
Q 010080          166 -PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP  244 (518)
Q Consensus       166 -~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~  244 (518)
                       |++|.|+.+|.+ ++.+++++|+|+|+|++.++++.+..+...|++|+|+.+|++.+...++.++|+|.||+.+.++..
T Consensus       487 aGaIP~LV~LL~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~  565 (2102)
T PLN03200        487 AGGIPPLVQLLET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT  565 (2102)
T ss_pred             CCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH
Confidence             899999999987 789999999999999999888888888899999999999999999999999999999975422110


Q ss_pred             h-----------------------------------hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhh
Q 010080          245 A-----------------------------------TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS  289 (518)
Q Consensus       245 ~-----------------------------------~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~  289 (518)
                      .                                   ...+...+++|.|+.++.+++++++..|+|+|.+++.+..+.++
T Consensus       566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~  645 (2102)
T PLN03200        566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE  645 (2102)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence            0                                   00011357999999999999999999999999999999999999


Q ss_pred             HHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC-cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHH
Q 010080          290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL  368 (518)
Q Consensus       290 ~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~L  368 (518)
                      .++..|+++.++.+| .+.+.+++..+.++|+|++.+.. .+...+++.      |++++|+.+|.+.+..++..|+.+|
T Consensus       646 avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~------GaV~pL~~LL~~~d~~v~e~Al~AL  718 (2102)
T PLN03200        646 SLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAE------DAIKPLIKLAKSSSIEVAEQAVCAL  718 (2102)
T ss_pred             HHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHc------CCHHHHHHHHhCCChHHHHHHHHHH
Confidence            999999999999999 47888899999999999997543 334455654      6999999999999999999999999


Q ss_pred             HHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHH-HHHHHHhcCchHHHHHhh
Q 010080          369 SNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE-HLVSLVGRGCLSGFIDLV  447 (518)
Q Consensus       369 snl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~-~~~~l~~~g~i~~L~~lL  447 (518)
                      .||+... +....+.+.|++++|+.+|++++++.|+.|+|+|.++|.+..     .   .+ ...++...|++.+|+++|
T Consensus       719 anLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~-----~---~~~~~~~~~~~g~v~~l~~~L  789 (2102)
T PLN03200        719 ANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP-----V---DDVLKDSVQCRGTVLALVDLL  789 (2102)
T ss_pred             HHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC-----h---hHHHHHHHHHhCcHHHHHHHH
Confidence            9998876 567778889999999999999999999999999999998531     1   12 236677899999999999


Q ss_pred             ccCCHHHHHH--HHHHHHHHHccCCC-----CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccC
Q 010080          448 RSADIEAARL--GLQFMELVLRGMPN-----HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDY  514 (518)
Q Consensus       448 ~~~d~~~~~~--~l~~l~~il~~~~~-----~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~  514 (518)
                      ...|.+....  +|++|..+.+....     ++....+|..++++.|.....|.+|.+|++|.+||+++..+-.
T Consensus       790 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~  863 (2102)
T PLN03200        790 NSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP  863 (2102)
T ss_pred             hcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence            9999887776  99999999985332     2446788999999999777799999999999999999988754

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1e-39  Score=301.03  Aligned_cols=363  Identities=20%  Similarity=0.299  Sum_probs=308.4

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhc-CChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080          126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAA-GKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  202 (518)
Q Consensus       126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~-~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  202 (518)
                      -+|.|.+-|-+++ -+.|..|..-+..+-+ .+.--.+.++  |.||.|+.+|.+.....++-.|+|+|.||+.......
T Consensus        72 elp~lt~~l~SdD-ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT  150 (526)
T COG5064          72 ELPQLTQQLFSDD-IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT  150 (526)
T ss_pred             hhHHHHHHHhhhH-HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence            3477888777655 4556777777776654 3334566777  7999999999766778899999999999999887888


Q ss_pred             HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh--hHHHHHHHHHHHh
Q 010080          203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE--ELTTEVAWVVVYL  280 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L  280 (518)
                      ..++++|++|.++++|.+++..++++++|+|.|++..  ...+++.+...|++..++.++.+.-.  .++..+.|+|+||
T Consensus       151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD--S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl  228 (526)
T COG5064         151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD--SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL  228 (526)
T ss_pred             EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC--chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence            8899999999999999999999999999999999943  35789999999999999999987655  7899999999999


Q ss_pred             hcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhh
Q 010080          281 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL  360 (518)
Q Consensus       281 ~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i  360 (518)
                      |+|.+..-..-.-...+|.|.+++ .+.+++++..|||+|++++.+..+.++.+++.|      ..+.|+.+|.|++..+
T Consensus       229 cRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g------~~~RLvElLs~~sa~i  301 (526)
T COG5064         229 CRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG------IPGRLVELLSHESAKI  301 (526)
T ss_pred             hCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcC------CcHHHHHHhcCccccc
Confidence            997543333222345688888888 588999999999999999999999999999875      8999999999999999


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080          361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  440 (518)
Q Consensus       361 ~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  440 (518)
                      +..|+..++||..|++.|.+.++++|+++.+-.+|+++...+||||||+|+|++.+      +    .+|++++++.+.+
T Consensus       302 qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAG------n----teqiqavid~nli  371 (526)
T COG5064         302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAG------N----TEQIQAVIDANLI  371 (526)
T ss_pred             cCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccC------C----HHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999874      3    4899999999999


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcc-hhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080          441 SGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG-TKLVEREDGIDAMERFQFHENEDLRNMANGLVDK  508 (518)
Q Consensus       441 ~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~-~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~  508 (518)
                      |+|+.+|...+..+.+.+++++.|...++-+-+. ...+.+.|.++.|.++..-.+..|-+.+..-++.
T Consensus       372 PpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~en  440 (526)
T COG5064         372 PPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIEN  440 (526)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHH
Confidence            9999999999999999999999999987755443 2567788999999888777666566666555543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.3e-27  Score=219.51  Aligned_cols=350  Identities=19%  Similarity=0.207  Sum_probs=289.8

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CC
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA  167 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~  167 (518)
                      .+++.|...|..|...+-++--+..+.-.  +++.+.+..|+.-+..+. .+.|..|..|++|++..++ .+..+.  |+
T Consensus        93 llqs~d~~Iq~aa~~alGnlAVn~enk~l--iv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~-nk~kiA~sGa  168 (550)
T KOG4224|consen   93 LLQSCDKCIQCAAGEALGNLAVNMENKGL--IVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDS-NKVKIARSGA  168 (550)
T ss_pred             HHhCcchhhhhhhhhhhccceeccCCceE--EEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcccc-chhhhhhccc
Confidence            33588999999999888886555444433  556555555554443333 4567889999999996643 344443  89


Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  247 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  247 (518)
                      +.++..+-++ .+..++..+..+|.|+.. +.+.|..++..|++|.|+.++.+.+..++..++.+++|++-..   ..+.
T Consensus       169 L~pltrLaks-kdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~---~~Rk  243 (550)
T KOG4224|consen  169 LEPLTRLAKS-KDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR---RARK  243 (550)
T ss_pred             hhhhHhhccc-chhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH---HHHH
Confidence            9999995554 889999999999999998 7899999999999999999999999999999999999998542   3344


Q ss_pred             HHHhhc--hHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          248 LIKVDG--LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       248 ~i~~~~--~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                      .+.+.+  .+|.|+.++.++++.+...|..+|.+|+. +.++...+.+.|.+|.++++| +++..+.......||.||+-
T Consensus       244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisi  321 (550)
T KOG4224|consen  244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELL-QSPMGPLILASVACIRNISI  321 (550)
T ss_pred             HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhccc
Confidence            555555  99999999999999999999999999997 567888899999999999999 57777777788899999986


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHH
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK  404 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~  404 (518)
                      ..-.. -.+++      .|++.+|+.+|...+. .++-.|.-+|.|+++.+......++++|.+|.++.++-++...+|.
T Consensus       322 hplNe-~lI~d------agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqs  394 (550)
T KOG4224|consen  322 HPLNE-VLIAD------AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQS  394 (550)
T ss_pred             ccCcc-cceec------ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHH
Confidence            65332 33454      4699999999988765 5999999999999998888899999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080          405 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       405 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~  468 (518)
                      +...++.-++...           ....++.+.|.++.|+.++.+...++...+..+|.|+...
T Consensus       395 eisac~a~Lal~d-----------~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  395 EISACIAQLALND-----------NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             HHHHHHHHHHhcc-----------ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence            9999999888752           3357899999999999999999999999999999999754

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.8e-26  Score=212.53  Aligned_cols=350  Identities=18%  Similarity=0.230  Sum_probs=292.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080           92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALP  169 (518)
Q Consensus        92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~  169 (518)
                      .+++.+.|..++.++-++.....+.  ..+..+|++..+.++-++.+ ...|..|..+|.|+... .+.++.++  |++|
T Consensus       136 mtd~vevqcnaVgCitnLaT~d~nk--~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs-~EnRr~LV~aG~lp  211 (550)
T KOG4224|consen  136 MTDGVEVQCNAVGCITNLATFDSNK--VKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHS-RENRRVLVHAGGLP  211 (550)
T ss_pred             cCCCcEEEeeehhhhhhhhccccch--hhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhh-hhhhhhhhccCCch
Confidence            4566778889999999977775544  45788999999999555544 56778899999999854 45666666  8999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcC--ChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  247 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  247 (518)
                      .|+.++.+ .+.++++.|..+++||+. ....|+.+.+.+  .+|.|+.++.++++.++-.|..+|.||+...  .+.++
T Consensus       212 vLVsll~s-~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~e  287 (550)
T KOG4224|consen  212 VLVSLLKS-GDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQRE  287 (550)
T ss_pred             hhhhhhcc-CChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhH
Confidence            99999998 799999999999999999 468899999998  9999999999999999999999999999653  45566


Q ss_pred             HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080          248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD  327 (518)
Q Consensus       248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  327 (518)
                      ++ .+|.+|.++++|+++.-........|+.||+-. +-+-..+++.|.+.+||.+|....+.+++..|..+|.|++...
T Consensus       288 iv-~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass  365 (550)
T KOG4224|consen  288 IV-EAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS  365 (550)
T ss_pred             HH-hcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence            65 699999999999988877778888899999973 4455677899999999999965556669999999999999877


Q ss_pred             CcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHH
Q 010080          328 SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  407 (518)
Q Consensus       328 ~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~  407 (518)
                      ......+.++      |++|.+..++......++.+...+++.++-. +.....+.+.|++|.|+.++.+.+.+++-+|+
T Consensus       366 e~n~~~i~es------gAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaA  438 (550)
T KOG4224|consen  366 EHNVSVIRES------GAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAA  438 (550)
T ss_pred             hhhhHHHhhc------CchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHH
Confidence            7777777765      5999999999999999999999999988754 46677899999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHh------cCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          408 YVLGNLCVSPTEGEGKPKLIQEHLVSLVG------RGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       408 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~------~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      .+|.|++.+           .++...+++      .|.-..|..++.+.+.-+...+.+.+..++...
T Consensus       439 aAL~Nlss~-----------v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  439 AALINLSSD-----------VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             HHHHhhhhh-----------hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            999999875           233333433      355556888998888888999999999998653

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.93  E-value=1.2e-22  Score=213.83  Aligned_cols=385  Identities=20%  Similarity=0.249  Sum_probs=298.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      ..+..++.   .+ ......|+..|-++....  .....+.+.|+++.|+.+|++++ .++...++++|.+++-... ++
T Consensus       253 kk~~~l~~---kQ-eqLlrv~~~lLlNLAed~--~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~E-NK  324 (708)
T PF05804_consen  253 KKLQTLIR---KQ-EQLLRVAFYLLLNLAEDP--RVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKE-NK  324 (708)
T ss_pred             HHHHHHHH---HH-HHHHHHHHHHHHHHhcCh--HHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHH-HH
Confidence            45555554   22 223334555566643332  22245678999999999999775 5676779999999996654 55


Q ss_pred             HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080          162 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       162 ~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~  239 (518)
                      ..+.  |+||.|++++.+ ++.+++..++++|.|++. ++..|..++..|++|.|+.+|.++  ..+..++..|++|+..
T Consensus       325 ~~m~~~giV~kL~kLl~s-~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d  400 (708)
T PF05804_consen  325 DEMAESGIVEKLLKLLPS-ENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD  400 (708)
T ss_pred             HHHHHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC
Confidence            5555  799999999988 788999999999999999 568899999999999999999865  3556788999999976


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhh
Q 010080          240 PDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR  318 (518)
Q Consensus       240 ~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~  318 (518)
                      +.   .+.++...+++|.+++++. .+++++..++.+.+.||+. ++.+.+.+.+.|+++.|++...+..+    .-.++
T Consensus       401 d~---~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlK  472 (708)
T PF05804_consen  401 DE---ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRD----PLLLK  472 (708)
T ss_pred             Hh---hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhccc----HHHHH
Confidence            43   3446666789999999766 4567788889999999998 55678999998999999998754333    22457


Q ss_pred             hhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC
Q 010080          319 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST  397 (518)
Q Consensus       319 ~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~  397 (518)
                      .+.|++.++.. ++..+       .+++..|+.++..+ +....-++..+|+|++..+....+.+.+.+++|.|.++|..
T Consensus       473 lIRNiS~h~~~-~k~~f-------~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~  544 (708)
T PF05804_consen  473 LIRNISQHDGP-LKELF-------VDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP  544 (708)
T ss_pred             HHHHHHhcCch-HHHHH-------HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC
Confidence            89999887743 32222       14777777777664 56899999999999998766666667788999999999965


Q ss_pred             C--ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhcc--CCHHHHHHHHHHHHHHHccCCCCc
Q 010080          398 S--PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHE  473 (518)
Q Consensus       398 ~--~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~d~~~~~~~l~~l~~il~~~~~~~  473 (518)
                      +  +.++.-|++..++.++..+           +....+.+.|+++.|+++|..  .|.+++.+++-+++.++.+.+.  
T Consensus       545 g~~~dDl~LE~Vi~~gtla~d~-----------~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t--  611 (708)
T PF05804_consen  545 GASEDDLLLEVVILLGTLASDP-----------ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET--  611 (708)
T ss_pred             CCCChHHHHHHHHHHHHHHCCH-----------HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH--
Confidence            3  5589999999999998752           345667799999999999996  5688999999999999987432  


Q ss_pred             chhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080          474 GTKLVEREDGIDAMERFQFHENEDLRNMANGLVD  507 (518)
Q Consensus       474 ~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~  507 (518)
                      ...++.+.+....+.+|.++.|++|++.|...++
T Consensus       612 r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ld  645 (708)
T PF05804_consen  612 REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALD  645 (708)
T ss_pred             HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            2355677888889999999999999998765554

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.4e-19  Score=185.22  Aligned_cols=388  Identities=18%  Similarity=0.180  Sum_probs=287.7

Q ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           83 ELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        83 ~l~~~l~~~~s~-~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      ++.++|++++.. |+..|++|+..+..+|+-.....+..+--..++|.|+.+|+...+.+++..|++||++++.--|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            778889988877 9999999999999999977655554444467899999999988888888999999999998888888


Q ss_pred             HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080          162 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       162 ~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~  239 (518)
                      ..++  ++||.|+.-|..-+..+|.||++.+|-.|+.+.   -..+++.|++...+.++.--....+|.|+-+..|+|..
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888  499999998776678999999999999999854   35789999999999999877889999999999999986


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC---CchhhhHHHhcCchHHHHHHHccCC---Cccch
Q 010080          240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL---SNVATSLLVKSGVLQLLVERLATSN---SLQLL  313 (518)
Q Consensus       240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~~~~~~~~g~~~~Lv~lL~~~~---~~~v~  313 (518)
                      -.+ ..++.+  ...+|.|..+|.+.|......+|-|+.+++++   .++..+.+..+|++.....+|.-.+   +..+.
T Consensus       325 i~s-d~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~  401 (1051)
T KOG0168|consen  325 IRS-DEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY  401 (1051)
T ss_pred             CCC-ccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence            433 334454  48999999999999999999999999999985   4677889999999999999885221   22334


Q ss_pred             hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-------------------------------------
Q 010080          314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-------------------------------------  356 (518)
Q Consensus       314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-------------------------------------  356 (518)
                      .-.++.+..++.+.+......+.      .++...|..+|.+.                                     
T Consensus       402 ~~vIrmls~msS~~pl~~~tl~k------~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~  475 (1051)
T KOG0168|consen  402 TGVIRMLSLMSSGSPLLFRTLLK------LDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEG  475 (1051)
T ss_pred             hHHHHHHHHHccCChHHHHHHHH------hhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccc
Confidence            45666777766664332211111      11222222222110                                     


Q ss_pred             -----------hhhhHHHHHH------------------HHH-------------Hhcc---------CCHHHHHHHHhC
Q 010080          357 -----------HRVLKKEAAW------------------VLS-------------NIAA---------GSVEHKQLIHSS  385 (518)
Q Consensus       357 -----------~~~i~~~a~~------------------~Ls-------------nl~~---------~~~~~~~~li~~  385 (518)
                                 ......++.|                  .+.             +.-.         ..++..+.++. 
T Consensus       476 i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-  554 (1051)
T KOG0168|consen  476 IFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-  554 (1051)
T ss_pred             eeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-
Confidence                       0000001111                  111             1111         12233344433 


Q ss_pred             CCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc-CchHHHHHhhccCCHHHHHHHHHHHH
Q 010080          386 EALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR-GCLSGFIDLVRSADIEAARLGLQFME  463 (518)
Q Consensus       386 ~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~-g~i~~L~~lL~~~d~~~~~~~l~~l~  463 (518)
                      .++|.|+++..+ .++.||..++.||..+.....         -+.++.++.. .+-..+-.+|.++|..++-.+|+..+
T Consensus       555 ~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~---------seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAE  625 (1051)
T KOG0168|consen  555 DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSN---------SELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAE  625 (1051)
T ss_pred             HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCC---------HHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHH
Confidence            389999999955 689999999999999987532         3567777755 45555667999999999999999999


Q ss_pred             HHHccCCCCcchhHHHhhchHHHHHHHhcC
Q 010080          464 LVLRGMPNHEGTKLVEREDGIDAMERFQFH  493 (518)
Q Consensus       464 ~il~~~~~~~~~~~ie~~ggl~~l~~L~~~  493 (518)
                      -|++..++ .+...|...|.+..+.+|...
T Consensus       626 iLmeKlpd-~F~~~F~REGV~~~v~~L~~~  654 (1051)
T KOG0168|consen  626 ILMEKLPD-TFSPSFRREGVFHAVKQLSVD  654 (1051)
T ss_pred             HHHHHhHH-HhhhhHhhhhHHHHHHHHhcc
Confidence            99988776 345667788999999988763

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.85  E-value=1.1e-18  Score=184.24  Aligned_cols=346  Identities=17%  Similarity=0.196  Sum_probs=269.2

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CC
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA  167 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~  167 (518)
                      .+.+++.+..+.++..|++ ||.... ....+.+.|++|.|++++.+++ ..++..|+++|.|++.+.. .+..++  |.
T Consensus       298 ~Ldr~n~ellil~v~fLkk-LSi~~E-NK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd~~-~R~~mV~~Gl  373 (708)
T PF05804_consen  298 CLDRENEELLILAVTFLKK-LSIFKE-NKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFDPE-LRSQMVSLGL  373 (708)
T ss_pred             HHcCCCHHHHHHHHHHHHH-HcCCHH-HHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcCHH-HHHHHHHCCC
Confidence            3458889999999999999 555432 3477889999999999999866 4566779999999998754 566666  89


Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      +|.|+.+|.+   +..+..|+.+|.|++. .++.|..+...+++|.++.++- .++..+...+++.+.||+..+   .+.
T Consensus       374 IPkLv~LL~d---~~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~---rna  446 (708)
T PF05804_consen  374 IPKLVELLKD---PNFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK---RNA  446 (708)
T ss_pred             cHHHHHHhCC---CchHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH---HHH
Confidence            9999999975   3466779999999999 4588999999999999998765 456677778899999999763   234


Q ss_pred             hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080          247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  326 (518)
Q Consensus       247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  326 (518)
                      +.+...++++.|+.......+.+   .+..+.|++.++......+  .+.+..|+..+....+.+....++.+|+|+...
T Consensus       447 qlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~  521 (708)
T PF05804_consen  447 QLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLTIP  521 (708)
T ss_pred             HHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence            56666788999987765433222   3358889998664333333  257888888886666788889999999999876


Q ss_pred             CCcccceeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CChhH
Q 010080          327 DSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDI  402 (518)
Q Consensus       327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v  402 (518)
                      +.+..+.+-+      .+++|.|..+|..+  ...+.-+++-.+|.++. .+.....+.+.|+++.|+.+|+.  .|.++
T Consensus       522 ~ld~~~ll~~------~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~  594 (708)
T PF05804_consen  522 DLDWAQLLQE------YNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEI  594 (708)
T ss_pred             CcCHHHHHHh------CCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHH
Confidence            6544444433      47999999999754  34799999999999975 44666667789999999999954  46778


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH-hcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          403 KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       403 ~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      .-..++++..+..+.+           -...++ +.+++..|++++.++++++..+|=.+|.-|..+.
T Consensus       595 VlQil~~f~~ll~h~~-----------tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d  651 (708)
T PF05804_consen  595 VLQILYVFYQLLFHEE-----------TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD  651 (708)
T ss_pred             HHHHHHHHHHHHcChH-----------HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            8889999999998742           234555 5689999999999999999999888888887654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.81  E-value=8.9e-18  Score=173.19  Aligned_cols=406  Identities=18%  Similarity=0.189  Sum_probs=283.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH-
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE-  159 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~-  159 (518)
                      -.++++.++++.+.++..|..|...+.. ++...+.-...+-+.|.||.||.+|.+.. .++|..|+|+|.|+..++.. 
T Consensus       232 d~~lpe~i~mL~~q~~~~qsnaaaylQH-lcfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~  309 (717)
T KOG1048|consen  232 DPTLPEVISMLMSQDPSVQSNAAAYLQH-LCFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTD  309 (717)
T ss_pred             ccccHHHHHHHhccChhhhHHHHHHHHH-HHhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCc
Confidence            3456666677779999999999888876 78877666667778999999999999865 67889999999999977655 


Q ss_pred             -HHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh-C-------CC------C
Q 010080          160 -ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM-L-------PN------K  222 (518)
Q Consensus       160 -~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll-~-------~~------~  222 (518)
                       +.-++.  ++||.++.+|....|.+++++...+|+|++. ++.++..++. ..+..|..-+ .       ++      +
T Consensus       310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~  387 (717)
T KOG1048|consen  310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAED  387 (717)
T ss_pred             ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHH-HHHHHHHHhhcccccccCCCCccccccc
Confidence             566665  7999999999976789999999999999998 3455555444 3466665432 2       11      3


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc------cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCc
Q 010080          223 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK------RADEELTTEVAWVVVYLSALSNVATSLLVKSGV  296 (518)
Q Consensus       223 ~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~  296 (518)
                      ..+..+++.||.|++... .+....+-...|.|..|+..++      ..|...+.++.-.|.||+..-.        ..+
T Consensus       388 ~~vf~n~tgcLRNlSs~~-~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~--------~Ev  458 (717)
T KOG1048|consen  388 STVFRNVTGCLRNLSSAG-QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLE--------AEV  458 (717)
T ss_pred             ceeeehhhhhhccccchh-HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhh--------hhc
Confidence            678999999999998642 2233334445789999998887      3466788889899999986321        112


Q ss_pred             hHHHHHHHcc---CCCccchhhhhhhhhhhhcCCCccc-------ceeeccCCC--chhhhHHHHHHHhc-cChhhhHHH
Q 010080          297 LQLLVERLAT---SNSLQLLIPVLRSLGNLVAGDSSTI-------SDVLVPGHG--ITDQVIAVLVKCLK-SEHRVLKKE  363 (518)
Q Consensus       297 ~~~Lv~lL~~---~~~~~v~~~al~~L~nl~~~~~~~~-------~~~i~~G~~--~~~~~l~~L~~lL~-~~~~~i~~~  363 (518)
                      .+.....+..   .....-......|.+.-....+...       .....-|.+  +...++..-..+|. +.++.+.+.
T Consensus       459 p~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEa  538 (717)
T KOG1048|consen  459 PPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEA  538 (717)
T ss_pred             CHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHH
Confidence            2222222210   0000000022233333322211110       000110111  23455655455554 456788999


Q ss_pred             HHHHHHHhccCCH---HH-HHHH-HhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC
Q 010080          364 AAWVLSNIAAGSV---EH-KQLI-HSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG  438 (518)
Q Consensus       364 a~~~Lsnl~~~~~---~~-~~~l-i~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g  438 (518)
                      ++.+|.|++++..   .. ++.+ ....++|+|+.+|..++.+|.+.++.+|.|++.+.            ..+.++..+
T Consensus       539 saGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~------------rnk~ligk~  606 (717)
T KOG1048|consen  539 SAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI------------RNKELIGKY  606 (717)
T ss_pred             hhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc------------hhhhhhhcc
Confidence            9999999999853   22 3334 45689999999999999999999999999999853            346778899


Q ss_pred             chHHHHHhhccCC------HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhhcC
Q 010080          439 CLSGFIDLVRSAD------IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       439 ~i~~L~~lL~~~d------~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~-~~~~i~~~a~~il~~~f~  511 (518)
                      +|+.|++.|....      .+++..++..|.+|+..-  ..+..-+.+.+|+++|..|..+ .++...+.|..++...|.
T Consensus       607 a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~--~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  607 AIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN--VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             hHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh--HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            9999999998643      578888888898888532  2346677789999999888655 466899999999988886


Q ss_pred             cc
Q 010080          512 ED  513 (518)
Q Consensus       512 ~~  513 (518)
                      ..
T Consensus       685 y~  686 (717)
T KOG1048|consen  685 YK  686 (717)
T ss_pred             HH
Confidence            53

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.79  E-value=1.3e-17  Score=178.35  Aligned_cols=366  Identities=23%  Similarity=0.235  Sum_probs=275.0

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCC--ChHHHHHHHHHHHHHhcCChH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS--PDEQLLEAAWCLTNIAAGKQE  159 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~--~~~~~~eA~~~L~nia~~~~~  159 (518)
                      +-...++.++...|.+   +-.+.|+.+-+.....  ..+..+|.+|.|+++|.-++  ..+....|-.+|+||....++
T Consensus       197 ets~sllsml~t~D~e---e~ar~fLemSss~esC--aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD  271 (2195)
T KOG2122|consen  197 ETSNSLLSMLGTDDEE---EMARTFLEMSSSPESC--AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD  271 (2195)
T ss_pred             hhhhHHhhhcccCCHH---HHHHHHHHhccCchhh--HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence            3334556566666664   3456666644443322  24567999999999998543  234556799999999977665


Q ss_pred             HHHH-----hcCChHHHH-------HhhcCC----C--CHHH-HHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC
Q 010080          160 ETKA-----LLPALPLLI-------AHLGEK----S--SSPV-AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP  220 (518)
Q Consensus       160 ~~~~-----v~~~v~~Lv-------~lL~~~----~--~~~v-~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~  220 (518)
                      ....     ++-.+..+.       .+|...    .  ..+- ..+|+.+|-.+++ ++++|..+-+.|++..+..|++-
T Consensus       272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~v  350 (2195)
T KOG2122|consen  272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQV  350 (2195)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHH
Confidence            4321     111222222       222221    0  1122 2477888889998 68999999999999999998861


Q ss_pred             C------------ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080          221 N------------KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT  288 (518)
Q Consensus       221 ~------------~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~  288 (518)
                      .            ...+++.+..+|.||..|+.. ....+....|++..++..|.+..+++....+.+|.||++..+.+.
T Consensus       351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~-NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nm  429 (2195)
T KOG2122|consen  351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVA-NKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNM  429 (2195)
T ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHhhcccccccc-chhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccH
Confidence            1            357999999999999998643 223355667999999999999999999999999999999766665


Q ss_pred             hHH-HhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh----hhhHHH
Q 010080          289 SLL-VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH----RVLKKE  363 (518)
Q Consensus       289 ~~~-~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~----~~i~~~  363 (518)
                      +.+ -+.|-+..|+..-........+..+|.+|.||+.+..+....+-+.     .|.|..|+.+|....    -.|...
T Consensus       430 KkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaV-----DGALaFLVg~LSY~~qs~tLaIIEs  504 (2195)
T KOG2122|consen  430 KKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAV-----DGALAFLVGTLSYEGQSNTLAIIES  504 (2195)
T ss_pred             HHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcc-----cchHHHHHhhccccCCcchhhhhhc
Confidence            554 4678888888766555666788899999999998765554444332     489999999998762    367788


Q ss_pred             HHHHHHHhc---cCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080          364 AAWVLSNIA---AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  440 (518)
Q Consensus       364 a~~~Lsnl~---~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  440 (518)
                      |-.+|.|+.   +.+..++|.+.+++.+..|++.|++.+.-+..++|.+|+||...      +|    +.-++|++.|++
T Consensus       505 aGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR------~p----~DQq~LwD~gAv  574 (2195)
T KOG2122|consen  505 AGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR------SP----EDQQMLWDDGAV  574 (2195)
T ss_pred             CccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC------CH----HHHHHHHhcccH
Confidence            888887765   45778999999999999999999999999999999999999874      33    334899999999


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          441 SGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       441 ~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      +.|.+++.++...+..-+..+|.|+|.+-
T Consensus       575 ~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  575 PMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            99999999999999999999999999754

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=3.1e-14  Score=132.77  Aligned_cols=322  Identities=17%  Similarity=0.197  Sum_probs=241.4

Q ss_pred             HcCCHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCC-CCHHHHHHHHHHHHhhhCCCh
Q 010080          123 KAGAIPVLVQCLAF--GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGE  199 (518)
Q Consensus       123 ~~g~ip~Lv~~L~~--~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~-~~~~v~~~a~~~L~nla~d~~  199 (518)
                      +.|..|.++..+..  ..+..+.+.++.+|..+..++++..++  .+...++.+|... ++.++....+.++..-|...+
T Consensus       102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da--~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE  179 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLFDA--EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHE  179 (461)
T ss_pred             cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchhcc--ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhH
Confidence            35666766665542  222344577888888888777753332  3677777777542 567788888888888887788


Q ss_pred             hhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCch-------hhHHHhhchHHHHHHHhc-cCChhHH
Q 010080          200 EFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPA-------TELIKVDGLLDAILRHLK-RADEELT  270 (518)
Q Consensus       200 ~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~-------~~~i~~~~~l~~L~~lL~-~~d~~v~  270 (518)
                      .+|+.+++.++++.+.+.|.. ....+.|.++|++..|...++....       ...+...+++..|...+. .-||.++
T Consensus       180 ~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L  259 (461)
T KOG4199|consen  180 VNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSL  259 (461)
T ss_pred             HHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHH
Confidence            999999999999999987774 4567999999999999876543321       123445667888888887 4578999


Q ss_pred             HHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccch---hhhhhhhhhhhcCCCcccceeeccCCCchhhhHH
Q 010080          271 TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL---IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIA  347 (518)
Q Consensus       271 ~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~---~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~  347 (518)
                      .+++.+|..|+- .++.++.+.+.|++..|+.++.+++....+   ..+|..|..++ |+|.....+++      .|+++
T Consensus       260 ~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~------~gg~~  331 (461)
T KOG4199|consen  260 VSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVE------KGGLD  331 (461)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHH------hcChH
Confidence            999999999997 667899999999999999999755555544   46777777776 55556666665      46899


Q ss_pred             HHHHHhc--cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC--hhHHHHHHHHHHHhcCCCCCCCCC
Q 010080          348 VLVKCLK--SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP--FDIKKEVAYVLGNLCVSPTEGEGK  423 (518)
Q Consensus       348 ~L~~lL~--~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~--~~v~~eA~~aL~nl~~~~~~~~~~  423 (518)
                      .++.++.  +.+|.|..++|.+++-|+-..|++...+++.|+-...++.|+...  ..+|++|||.|.|++..+      
T Consensus       332 ~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs------  405 (461)
T KOG4199|consen  332 KIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS------  405 (461)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh------
Confidence            9998873  457899999999999999999999999999999999999996533  469999999999999863      


Q ss_pred             chhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHH
Q 010080          424 PKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELV  465 (518)
Q Consensus       424 ~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~i  465 (518)
                          .+++..++.. ++..|+..-....+..-..+-.+|.-+
T Consensus       406 ----~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  406 ----AENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             ----hhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence                3444555554 466677766666655544444455444

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.69  E-value=1.3e-13  Score=144.07  Aligned_cols=399  Identities=19%  Similarity=0.189  Sum_probs=286.3

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CC
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA  167 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~  167 (518)
                      -++..+.+....++..|.+++.... + . .+ ..+..+.|...|.+++ +.++.-+++.|.+++.++......+.  +.
T Consensus        46 ~L~~~~~e~v~~~~~iL~~~l~~~~-~-~-~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l  120 (503)
T PF10508_consen   46 CLNTSNREQVELICDILKRLLSALS-P-D-SL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVDNEL  120 (503)
T ss_pred             HHhhcChHHHHHHHHHHHHHHhccC-H-H-HH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence            3446677777788888999887542 2 2 22 5778899999999766 56666799999999988776666666  58


Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  247 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  247 (518)
                      ++.++.+|.+ ++.+|...|+.+|.+++... ...+.++..+.++.|..++..++..++.-+..++.+++..+  ....+
T Consensus       121 ~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~~~~  196 (503)
T PF10508_consen  121 LPLIIQCLRD-PDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS--PEAAE  196 (503)
T ss_pred             HHHHHHHHcC-CcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC--HHHHH
Confidence            9999999987 89999999999999999854 45567888888999999998877788888999999998663  34556


Q ss_pred             HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCc----cchhh-hhhhhhh
Q 010080          248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL----QLLIP-VLRSLGN  322 (518)
Q Consensus       248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~----~v~~~-al~~L~n  322 (518)
                      .+...|+++.+++.+.++|.=++.+++-+|..|+. .+...+.+.+.|+++.|+.++......    .+..| .++..|+
T Consensus       197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~  275 (503)
T PF10508_consen  197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN  275 (503)
T ss_pred             HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence            66678999999999999888899999999999999 777899999999999999999643222    22333 3478888


Q ss_pred             hhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHH-HhC-C----CHHHHHHHhc
Q 010080          323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI-HSS-E----ALALLLHLLS  396 (518)
Q Consensus       323 l~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~l-i~~-~----~i~~Li~lL~  396 (518)
                      ++...+..+....       ..++..+..++.+.++..+..|.-+++.|+.. .+..+.+ ... +    ++..+.....
T Consensus       276 la~~~~~~v~~~~-------p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~  347 (503)
T PF10508_consen  276 LARVSPQEVLELY-------PAFLERLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIK  347 (503)
T ss_pred             HHhcChHHHHHHH-------HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhc
Confidence            8875433322111       24666677777888999999999999999754 4555555 333 2    3444555556


Q ss_pred             CCChhHHHHHHHHHHHhcCCCCCCCCCchhHH---HHHHHHHhcCchH-HHHHhhccCCHHHHHHHHHHHHHHHccCCCC
Q 010080          397 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ---EHLVSLVGRGCLS-GFIDLVRSADIEAARLGLQFMELVLRGMPNH  472 (518)
Q Consensus       397 ~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~---~~~~~l~~~g~i~-~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~  472 (518)
                      ++..++|..+.-+++++....+.  ...+.+.   +.+-.....+... .+.++++.+=+++...++.++..++... .+
T Consensus       348 ~~~~~lk~r~l~al~~il~~~~~--~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~-Wg  424 (503)
T PF10508_consen  348 SGSTELKLRALHALASILTSGTD--RQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP-WG  424 (503)
T ss_pred             CCchHHHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH-HH
Confidence            77889999999999999654321  1111111   1111223345566 7888888888999999999999998642 11


Q ss_pred             cchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          473 EGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       473 ~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                       ...+....|.++.+-+=....+++..++=..|+...-
T Consensus       425 -~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  425 -QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             -HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence             1233334455554433244456677666566655543

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.67  E-value=5.2e-13  Score=139.62  Aligned_cols=384  Identities=20%  Similarity=0.215  Sum_probs=280.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhc
Q 010080           97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG  176 (518)
Q Consensus        97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~  176 (518)
                      ...++++..++.-++..+      ..+....+.+..+|+..+ .+....++.+|..+..... ......+..+.|...|.
T Consensus        16 ~~~~~~L~~l~~~~~~~~------~l~~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~~-~~~l~~~~~~~L~~gL~   87 (503)
T PF10508_consen   16 AERLEALPELKTELSSSP------FLERLPEPVLFDCLNTSN-REQVELICDILKRLLSALS-PDSLLPQYQPFLQRGLT   87 (503)
T ss_pred             cchHHHHHHHHHHHhhhh------HHHhchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Confidence            455677777766554332      222333444778887554 3333457777887775432 22223367888888898


Q ss_pred             CCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHH
Q 010080          177 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD  256 (518)
Q Consensus       177 ~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~  256 (518)
                      + +++.|+..+++.|++++.++......+.+.++++.++.++.+++..+...|+.+|.+|+..+  . ..+.+...+.++
T Consensus        88 h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~-~~~~l~~~~~~~  163 (503)
T PF10508_consen   88 H-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--E-GLEQLFDSNLLS  163 (503)
T ss_pred             C-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--h-hHHHHhCcchHH
Confidence            7 88999999999999999988888888999999999999999999999999999999999753  2 233444567789


Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeec
Q 010080          257 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV  336 (518)
Q Consensus       257 ~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~  336 (518)
                      .|..++...++.++..++.++.+++..+++..+.+.+.|+++.++..|. .+|.-++..++.+++.++. .+...+.+.+
T Consensus       164 ~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~-~dDiLvqlnalell~~La~-~~~g~~yL~~  241 (503)
T PF10508_consen  164 KLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD-SDDILVQLNALELLSELAE-TPHGLQYLEQ  241 (503)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc-CccHHHHHHHHHHHHHHHc-ChhHHHHHHh
Confidence            9999998888899999999999999989999999999999999999994 5777788999999999998 4455666664


Q ss_pred             cCCCchhhhHHHHHHHhccCh--h---h-hHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHH
Q 010080          337 PGHGITDQVIAVLVKCLKSEH--R---V-LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  410 (518)
Q Consensus       337 ~G~~~~~~~l~~L~~lL~~~~--~---~-i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL  410 (518)
                            .|+++.|..++.+..  +   . +.-..+...+|++...+..+.... ..++..|.+++.+.|...+.-|.-++
T Consensus       242 ------~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtl  314 (503)
T PF10508_consen  242 ------QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTL  314 (503)
T ss_pred             ------CCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHH
Confidence                  469999999996542  2   1 223344667778775444332221 13566677777889999999999999


Q ss_pred             HHhcCCCCCCCCCchhHHHHHHHH-Hhc-----CchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcc-------hhH
Q 010080          411 GNLCVSPTEGEGKPKLIQEHLVSL-VGR-----GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG-------TKL  477 (518)
Q Consensus       411 ~nl~~~~~~~~~~~~~~~~~~~~l-~~~-----g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~-------~~~  477 (518)
                      +.++...           +-...| .+.     .++..+.....+...+++..++.++.+|+........       ...
T Consensus       315 g~igst~-----------~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w  383 (503)
T PF10508_consen  315 GQIGSTV-----------EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESW  383 (503)
T ss_pred             HHHhCCH-----------HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            9998642           222334 333     2566777777778889999999999999976543111       122


Q ss_pred             HHhhc--hHH-HHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080          478 VERED--GID-AMERFQFHENEDLRNMANGLVDKYFGE  512 (518)
Q Consensus       478 ie~~g--gl~-~l~~L~~~~~~~i~~~a~~il~~~f~~  512 (518)
                      ++..+  ... .+..+...+=+|++-.|.+++...+..
T Consensus       384 ~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  384 YESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            33333  233 566677888899999999998876643

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK09687 putative lyase; Provisional

Probab=99.65  E-value=2.6e-14  Score=137.53  Aligned_cols=255  Identities=13%  Similarity=0.059  Sum_probs=195.8

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH
Q 010080          125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV  204 (518)
Q Consensus       125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~  204 (518)
                      -.++.|..+|.+++ ..++..|+++|..+....         +++.+..++.+ +++.++..++|+|+.|-.....    
T Consensus        23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~~---------~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGGQD---------VFRLAIELCSS-KNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCcch---------HHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccc----
Confidence            35667778887655 446667999998876421         36677777776 7899999999999998642211    


Q ss_pred             HHhcCChhHHHhh-hCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC
Q 010080          205 LLSQGALPPLARM-MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL  283 (518)
Q Consensus       205 ~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  283 (518)
                        ...+++.|..+ +++++..++..++.+|.+++... +.+      ...+++.+...+.+++..|+..++++|.++.+ 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKN-PLY------SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-ccc------chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-
Confidence              12356777777 55678999999999999997542 111      12456667788888999999999999987653 


Q ss_pred             CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHH
Q 010080          284 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE  363 (518)
Q Consensus       284 ~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~  363 (518)
                                ...++.|+.+| .++++.++..|..+||.+..++               ..+++.|+.+|.+.++.||.+
T Consensus       158 ----------~~ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~~---------------~~~~~~L~~~L~D~~~~VR~~  211 (280)
T PRK09687        158 ----------EAAIPLLINLL-KDPNGDVRNWAAFALNSNKYDN---------------PDIREAFVAMLQDKNEEIRIE  211 (280)
T ss_pred             ----------HHHHHHHHHHh-cCCCHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHhcCCChHHHHH
Confidence                      23578889989 4788899999999999983322               248899999999999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHH
Q 010080          364 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGF  443 (518)
Q Consensus       364 a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L  443 (518)
                      |+|+|+.+-  ++         ..+|.|++.|.+++  ++..|+.+|+++-        +|             .++|.|
T Consensus       212 A~~aLg~~~--~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig--------~~-------------~a~p~L  257 (280)
T PRK09687        212 AIIGLALRK--DK---------RVLSVLIKELKKGT--VGDLIIEAAGELG--------DK-------------TLLPVL  257 (280)
T ss_pred             HHHHHHccC--Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcC--------CH-------------hHHHHH
Confidence            999999873  32         37899999999876  6789999999983        22             268899


Q ss_pred             HHhhc-cCCHHHHHHHHHHHHH
Q 010080          444 IDLVR-SADIEAARLGLQFMEL  464 (518)
Q Consensus       444 ~~lL~-~~d~~~~~~~l~~l~~  464 (518)
                      ..++. .+|+.++..+.++|..
T Consensus       258 ~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        258 DTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHhhCCChhHHHHHHHHHhc
Confidence            99997 7899999999888763

>PRK09687 putative lyase; Provisional

Probab=99.64  E-value=4.2e-14  Score=136.11  Aligned_cols=254  Identities=12%  Similarity=0.079  Sum_probs=193.8

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      .++.|+.+|.+ ++..++..++|+|+.+-.           ..+++.+..+++++++.++..++|+|+.|-...  ..  
T Consensus        24 ~~~~L~~~L~d-~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~--   87 (280)
T PRK09687         24 NDDELFRLLDD-HNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RC--   87 (280)
T ss_pred             cHHHHHHHHhC-CCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cc--
Confidence            57788899977 789999999999998753           234677888889999999999999999995321  11  


Q ss_pred             hHHHhhchHHHHHHH-hccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          247 ELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       247 ~~i~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                          ....+|.|..+ ++++++.|+..++.+|++++......     ...++..+...+ .+++..|+..+.++||++-.
T Consensus        88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~  157 (280)
T PRK09687         88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND  157 (280)
T ss_pred             ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC
Confidence                13577888877 67888999999999999997533211     112344555555 46788999999999987631


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  405 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e  405 (518)
                                       ...++.|+.+|.++++.||..|+++|+.+..+++         .+++.|+.+|.+.+..||.+
T Consensus       158 -----------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~  211 (280)
T PRK09687        158 -----------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIE  211 (280)
T ss_pred             -----------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHH
Confidence                             2488999999999999999999999999944443         26778999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHH
Q 010080          406 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID  485 (518)
Q Consensus       406 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~  485 (518)
                      |+|+|+.+-.        +             .++++|+..|.+++.  ...+.++|..+   + .         .-.+.
T Consensus       212 A~~aLg~~~~--------~-------------~av~~Li~~L~~~~~--~~~a~~ALg~i---g-~---------~~a~p  255 (280)
T PRK09687        212 AIIGLALRKD--------K-------------RVLSVLIKELKKGTV--GDLIIEAAGEL---G-D---------KTLLP  255 (280)
T ss_pred             HHHHHHccCC--------h-------------hHHHHHHHHHcCCch--HHHHHHHHHhc---C-C---------HhHHH
Confidence            9999998622        1             278999999988774  33455555544   1 1         12466


Q ss_pred             HHHHHhc-CCCHHHHHHHHHHHHh
Q 010080          486 AMERFQF-HENEDLRNMANGLVDK  508 (518)
Q Consensus       486 ~l~~L~~-~~~~~i~~~a~~il~~  508 (518)
                      .|..+.. +++..+..+|.+.+.+
T Consensus       256 ~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        256 VLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHHHhhCCChhHHHHHHHHHhc
Confidence            7777765 8899999999887764

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=3.1e-13  Score=126.13  Aligned_cols=305  Identities=15%  Similarity=0.218  Sum_probs=232.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCC-hHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSP-DEQLLEAAWCLTNIAAGKQEETKALL--PALP  169 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~-~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~  169 (518)
                      +++....++++..+..+....   |  .+.++.++..++.+|..... .++..-...++..-|-+...+++.++  +++|
T Consensus       118 ~~~~~~l~ksL~al~~lt~~q---p--dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQ---P--DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCC---c--chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            455666666776666643322   2  26678889999999975432 33434466777777777777788887  6888


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhCCCh---------hhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhhcC
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGE---------EFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~---------~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~  239 (518)
                      .+...|...+...+...+.|++.-+..|+.         .....+...|++..|+..++.. ++.++..++.+|..|+-.
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            888788776666788899999999987653         3445677778899999998854 788999999999999865


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccCC-h---hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccC-CCccchh
Q 010080          240 PDPKPATELIKVDGLLDAILRHLKRAD-E---ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-NSLQLLI  314 (518)
Q Consensus       240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d-~---~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~-~~~~v~~  314 (518)
                      .  ..|.++ .+.|++..|++++.+.+ .   +....+|..|+.|+. +++....+++.|+.+.++.++..+ .++.+..
T Consensus       273 ~--E~C~~I-~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~  348 (461)
T KOG4199|consen  273 D--EICKSI-AESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQ  348 (461)
T ss_pred             H--HHHHHH-HHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHH
Confidence            3  456654 47999999999998633 3   456778888888885 667888899999999999887644 5777888


Q ss_pred             hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-cC-hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHH
Q 010080          315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL  392 (518)
Q Consensus       315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~-~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li  392 (518)
                      .++.+++-++-..++....+++.|      +-...++.|. |+ ...+++.|||.|.|++..+.++...++.. ++..|+
T Consensus       349 ~~~a~i~~l~LR~pdhsa~~ie~G------~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li  421 (461)
T KOG4199|consen  349 EVMAIISILCLRSPDHSAKAIEAG------AADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLI  421 (461)
T ss_pred             HHHHHHHHHHhcCcchHHHHHhcc------hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHH
Confidence            999999999988888888888765      6566666664 44 35899999999999999998999888887 467777


Q ss_pred             HHhcCCChhHHHHHHHHHHHh
Q 010080          393 HLLSTSPFDIKKEVAYVLGNL  413 (518)
Q Consensus       393 ~lL~~~~~~v~~eA~~aL~nl  413 (518)
                      ..-+...+.+...|--+|..+
T Consensus       422 ~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  422 RTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             HHHHhcCccHHHHHHHHHHhc
Confidence            777776667777777777776

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.56  E-value=5.2e-13  Score=128.39  Aligned_cols=353  Identities=14%  Similarity=0.082  Sum_probs=245.0

Q ss_pred             CHHHHHHHHHHHHHHhcCC--CCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHH
Q 010080           95 AMQKRVNALRELRRLLSRF--EFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPL  170 (518)
Q Consensus        95 ~~~~~~~a~~~lr~lls~~--~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~  170 (518)
                      +......+..++.+.-..+  ++.....-|.++.+..|.+..++++ .++..+..++|+|+|..+.+.+.++.  |+-..
T Consensus        55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi  133 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI  133 (604)
T ss_pred             cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence            3444555555555532111  1111122356777788888777764 45556799999999999999999998  67666


Q ss_pred             HHHhhcCC------CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC--CChhHHHHHHHHHHHhhcCCCC
Q 010080          171 LIAHLGEK------SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDP  242 (518)
Q Consensus       171 Lv~lL~~~------~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~  242 (518)
                      ++.+|...      .+.+...-+...|.|..-++.+.|..+++.|+++.|...+.-  .+..+.+...-.+.||...-..
T Consensus       134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e  213 (604)
T KOG4500|consen  134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE  213 (604)
T ss_pred             hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence            77776541      234666777788999999999999999999999999998763  3444444444433443321000


Q ss_pred             CchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccch-------h
Q 010080          243 KPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL-------I  314 (518)
Q Consensus       243 ~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~-------~  314 (518)
                       ...++.......-.+++++. ...+++...++-.|++.++++. ..-.+.+.|.+..+++++.+.++..-.       .
T Consensus       214 -~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k  291 (604)
T KOG4500|consen  214 -MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK  291 (604)
T ss_pred             -hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence             00112223455666777776 3456777778888999998544 334456789999999988643332222       2


Q ss_pred             hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080          315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  394 (518)
Q Consensus       315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l  394 (518)
                      .++-.+.-+.+|++. .+.+...     ..++..+..++.+.+......+..+|+|++... ..+..+++.+++..|+.+
T Consensus       292 ~~~el~vllltGDeS-Mq~L~~~-----p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~  364 (604)
T KOG4500|consen  292 RIAELDVLLLTGDES-MQKLHAD-----PQFLDFLESWFRSDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISC  364 (604)
T ss_pred             hhhhHhhhhhcCchH-HHHHhcC-----cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHH
Confidence            334444455566643 2333322     248899999999999999999999999998765 677889999999999999


Q ss_pred             hc-----CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080          395 LS-----TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       395 L~-----~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~  468 (518)
                      |.     +++..++..++.||.|+...-           .....++..|+...+.-+|+...|.++..-+..+..+..+
T Consensus       365 l~~~~~vdgnV~~qhA~lsALRnl~IPv-----------~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~  432 (604)
T KOG4500|consen  365 LMQEKDVDGNVERQHACLSALRNLMIPV-----------SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS  432 (604)
T ss_pred             HHHhcCCCccchhHHHHHHHHHhccccC-----------CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence            83     367789999999999998731           1235778999999999999999999999888888877654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.52  E-value=2.1e-12  Score=133.81  Aligned_cols=306  Identities=19%  Similarity=0.206  Sum_probs=223.3

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      -+|.-+.+|.+ .++.++-.|+.-+..+|....+.+..+.+.|+|+.|+.++.+.+.+++++|+|+|.||..++.....+
T Consensus       234 ~lpe~i~mL~~-q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMS-QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhc-cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            67888999987 78999999999999999999999999999999999999999999999999999999999886543344


Q ss_pred             hHHHhhchHHHHHHHhcc-CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-C--------C----Cccc
Q 010080          247 ELIKVDGLLDAILRHLKR-ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-S--------N----SLQL  312 (518)
Q Consensus       247 ~~i~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-~--------~----~~~v  312 (518)
                      -.|...+++|.++++|.. .|.++...+..+|.||+..  +..+..+-...+..|.+.+.. +        +    +..+
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v  390 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV  390 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence            455678999999999996 7899999999999999975  455555555556666654431 1        1    2467


Q ss_pred             hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc------ChhhhHHHHHHHHHHhccCCH-----HHHH-
Q 010080          313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS------EHRVLKKEAAWVLSNIAAGSV-----EHKQ-  380 (518)
Q Consensus       313 ~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~------~~~~i~~~a~~~Lsnl~~~~~-----~~~~-  380 (518)
                      ...+..||.|++....+..+.+-++     .|++..|+..+++      .+.+-.+.+.-++.|+.-.-.     ...+ 
T Consensus       391 f~n~tgcLRNlSs~~~eaR~~mr~c-----~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~  465 (717)
T KOG1048|consen  391 FRNVTGCLRNLSSAGQEAREQMREC-----DGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV  465 (717)
T ss_pred             eehhhhhhccccchhHHHHHHHhhc-----cchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence            7889999999998776666666665     4788888887763      234556677777888753211     0000 


Q ss_pred             -------------------------H----------------------HHhCCCHHHHHHHh-cCCChhHHHHHHHHHHH
Q 010080          381 -------------------------L----------------------IHSSEALALLLHLL-STSPFDIKKEVAYVLGN  412 (518)
Q Consensus       381 -------------------------~----------------------li~~~~i~~Li~lL-~~~~~~v~~eA~~aL~n  412 (518)
                                               .                      +....++..-..+| .+.+..+.+.++.+|-|
T Consensus       466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN  545 (717)
T KOG1048|consen  466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN  545 (717)
T ss_pred             hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence                                     0                      00011233323334 45667899999999999


Q ss_pred             hcCCCCCCCCCchhHHHHHH-HH-HhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH
Q 010080          413 LCVSPTEGEGKPKLIQEHLV-SL-VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF  490 (518)
Q Consensus       413 l~~~~~~~~~~~~~~~~~~~-~l-~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L  490 (518)
                      ++.+.    +.+   ..++. .+ .+..++++|+++|..+|..++..+..+|.|+-....+   ...+ .-+++..|.+.
T Consensus       546 ltA~~----~~~---~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn---k~li-gk~a~~~lv~~  614 (717)
T KOG1048|consen  546 LTAGL----WTW---SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN---KELI-GKYAIPDLVRC  614 (717)
T ss_pred             hhccC----Ccc---hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh---hhhh-hcchHHHHHHh
Confidence            98752    221   13333 33 5789999999999999999999999999999765332   2222 23455555444


Q ss_pred             h
Q 010080          491 Q  491 (518)
Q Consensus       491 ~  491 (518)
                      .
T Consensus       615 L  615 (717)
T KOG1048|consen  615 L  615 (717)
T ss_pred             C
Confidence            3

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=2.5e-11  Score=118.36  Aligned_cols=350  Identities=14%  Similarity=0.158  Sum_probs=246.5

Q ss_pred             HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH-HHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC
Q 010080          119 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE-ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE  197 (518)
Q Consensus       119 ~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~-~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d  197 (518)
                      ..+.+.+++..||..|+.++. ++..-....|..++--... ....-.|.|..|++++.. .+++++...+..|-|++.|
T Consensus       298 lKMrrkniV~mLVKaLdr~n~-~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~-~h~dL~~~tl~LlfNlSFD  375 (791)
T KOG1222|consen  298 LKMRRKNIVAMLVKALDRSNS-SLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI-QHPDLRKATLMLLFNLSFD  375 (791)
T ss_pred             HHHHHHhHHHHHHHHHcccch-HHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC-CCHHHHHHHHHHhhhcccc
Confidence            356778999999999997663 4445566667777633222 222223799999999987 7899999999999999997


Q ss_pred             ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHH
Q 010080          198 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWV  276 (518)
Q Consensus       198 ~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~  276 (518)
                      + ..|..+++.|.+|.|..++.++...  ..|+..++.++-.+.   ...++.-..++|.+.+.+- ..+.+|-......
T Consensus       376 ~-glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~---~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~  449 (791)
T KOG1222|consen  376 S-GLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDD---AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIAL  449 (791)
T ss_pred             c-cccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcH---HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHH
Confidence            6 7888999999999999999876422  234444555553322   2335556789999887655 4455665555544


Q ss_pred             HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-
Q 010080          277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-  355 (518)
Q Consensus       277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-  355 (518)
                      .-||+- +..+.+.+++...+..|++.-.++.++    -....+.||+.+.......+++        .+.-|..++.. 
T Consensus       450 ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--------yvgdLa~i~~nd  516 (791)
T KOG1222|consen  450 CINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--------YVGDLAGIAKND  516 (791)
T ss_pred             HHHHHh-ccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--------HHHHHHHHhhcC
Confidence            457776 445678888877888887765434332    2346677887766543334443        45556666654 


Q ss_pred             ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC--ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 010080          356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS  433 (518)
Q Consensus       356 ~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~  433 (518)
                      .+.....++..+++|++...-...+.+-+.+++|.+-..|+-+  ..++.-+.+.+++.++..           ......
T Consensus       517 ~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-----------~~cA~L  585 (791)
T KOG1222|consen  517 NSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-----------LDCARL  585 (791)
T ss_pred             chHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-----------hHHHHH
Confidence            4457888999999999987767777788899999999999653  456777778787777653           233455


Q ss_pred             HHhcCchHHHHHhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHH
Q 010080          434 LVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA  502 (518)
Q Consensus       434 l~~~g~i~~L~~lL~~--~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a  502 (518)
                      +...|+|+.|+++|+.  .|.+++.+.+-+...++++..  ....++.+...-..+.+|.++.|.+|++-+
T Consensus       586 la~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~--tr~~miket~~~AylIDLMHDkN~eiRkVC  654 (791)
T KOG1222|consen  586 LAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHEL--TRRLMIKETALGAYLIDLMHDKNAEIRKVC  654 (791)
T ss_pred             hCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH--HHHHHHhhccchHHHHHHHhcccHHHHHHH
Confidence            6688999999999996  567777777777777777521  223456665555678999999999998754

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.49  E-value=6.4e-12  Score=120.98  Aligned_cols=320  Identities=16%  Similarity=0.179  Sum_probs=221.4

Q ss_pred             HHHHHHHHHHHHhcCCh---HHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHh
Q 010080          142 QLLEAAWCLTNIAAGKQ---EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR  216 (518)
Q Consensus       142 ~~~eA~~~L~nia~~~~---~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~  216 (518)
                      +...++.|+..++....   .-+...+  +++..|.+..++ ++.++-+|+.++|||||.|+.+.|..+.+.|+-..++.
T Consensus        58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid  136 (604)
T KOG4500|consen   58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVID  136 (604)
T ss_pred             hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHh
Confidence            44567778887773321   1122323  577888888877 68999999999999999999999999999999888888


Q ss_pred             hhCC---C----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcCCchh
Q 010080          217 MMLP---N----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVA  287 (518)
Q Consensus       217 ll~~---~----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~  287 (518)
                      +|++   .    +.+....+...|+|-.-+.  ...+..+...|++|.|..++.  ..+.+........+.+|..--.+.
T Consensus       137 ~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~--~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~  214 (604)
T KOG4500|consen  137 VLKPYCSKDNPANEEYSAVAFGVLHNYILDS--RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEM  214 (604)
T ss_pred             hhccccccCCccHHHHHHHHHHHHHHhhCCc--HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHh
Confidence            8873   1    3477778888888876543  233334457899999998876  334444444444433333211111


Q ss_pred             -hhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-Ch-------h
Q 010080          288 -TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EH-------R  358 (518)
Q Consensus       288 -~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-~~-------~  358 (518)
                       .....+..+.-.++++|.....+.+...++.++...+..+... -.+.      +.|.+..+..++.. +.       .
T Consensus       215 ~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la------~~gl~e~~~~lv~~~k~~t~k~d~~  287 (604)
T KOG4500|consen  215 LYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLA------QNGLLEDSIDLVRNMKDFTKKTDML  287 (604)
T ss_pred             hhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehh------hcchHHHHHHHHHhcccccchHHHH
Confidence             2233456666777888866666777777788888777555333 2333      34688888888865 21       2


Q ss_pred             hhHHHHHHHHHHhccCCHHHHHHHHhCC-CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 010080          359 VLKKEAAWVLSNIAAGSVEHKQLIHSSE-ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR  437 (518)
Q Consensus       359 ~i~~~a~~~Lsnl~~~~~~~~~~li~~~-~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~  437 (518)
                      ..-+.+|-...-|..|. +-.+.+...+ ++..+...+.+.|.+....++.+|+|++..           +.++.+++++
T Consensus       288 ~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-----------D~~ci~~v~~  355 (604)
T KOG4500|consen  288 NLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-----------DDICIQLVQK  355 (604)
T ss_pred             HHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-----------chHHHHHHHH
Confidence            34455555555555555 5567777665 899999999999999999999999999875           4788999999


Q ss_pred             CchHHHHHhhcc-----CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHH
Q 010080          438 GCLSGFIDLVRS-----ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA  486 (518)
Q Consensus       438 g~i~~L~~lL~~-----~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~  486 (518)
                      |.+..|+++|..     ++.+.+..++.+|.+++--.+   +...+-..|..+.
T Consensus       356 ~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~---nka~~~~aGvtea  406 (604)
T KOG4500|consen  356 DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS---NKAHFAPAGVTEA  406 (604)
T ss_pred             HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC---chhhccccchHHH
Confidence            999999999875     567889999999999974222   2333444454444

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.49  E-value=7.1e-13  Score=111.35  Aligned_cols=117  Identities=31%  Similarity=0.538  Sum_probs=106.6

Q ss_pred             HHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC
Q 010080          120 TALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE  197 (518)
Q Consensus       120 ~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d  197 (518)
                      .+++.|++|.|+++|..++ ...+..|+++|.+++.+.++....++  +++|.++.+|.+ +++.++..|+|+|+|++.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccC
Confidence            4678999999999998765 56667899999999999888877777  799999999987 7899999999999999998


Q ss_pred             ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080          198 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK  238 (518)
Q Consensus       198 ~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  238 (518)
                      .+..+..+...|+++.|+.++...+..+++.++|+|.|||.
T Consensus        80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            88889999999999999999999999999999999999983

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.49  E-value=3.2e-12  Score=120.41  Aligned_cols=227  Identities=18%  Similarity=0.191  Sum_probs=179.3

Q ss_pred             hhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCc
Q 010080          251 VDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS  329 (518)
Q Consensus       251 ~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~  329 (518)
                      ..+-++.|+.+|. +.|+.++..+++++++.+. .+.....+.+.|+++.+..+| ..+++.++..|+.++.|++...+.
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhh
Confidence            5678899999998 5689999999999999876 567788888999999999999 578999999999999999877655


Q ss_pred             ccceeeccCCCchhhhHHHHHHHh-cc-ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHH
Q 010080          330 TISDVLVPGHGITDQVIAVLVKCL-KS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  407 (518)
Q Consensus       330 ~~~~~i~~G~~~~~~~l~~L~~lL-~~-~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~  407 (518)
                      +.+  +.       ..++.+.... .+ -+..++..+..+|.|++..+ +....+.  +.+|.++.+|.+++..+|..++
T Consensus        88 ~~~--Ik-------~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vL  155 (254)
T PF04826_consen   88 QEQ--IK-------MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVL  155 (254)
T ss_pred             HHH--HH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCChHHHHHHH
Confidence            432  22       2455555543 33 36689999999999998754 3333333  4799999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC-CHHHHHHHHHHHHHHHccCCCC-------cc-----
Q 010080          408 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRGMPNH-------EG-----  474 (518)
Q Consensus       408 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~~~~~~l~~l~~il~~~~~~-------~~-----  474 (518)
                      ++|.|++.+           ....+.|+..++++.|+.+++.. +.++...++..++||-++....       .+     
T Consensus       156 k~L~nLS~n-----------p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L  224 (254)
T PF04826_consen  156 KVLVNLSEN-----------PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSL  224 (254)
T ss_pred             HHHHHhccC-----------HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhH
Confidence            999999875           25678999999999999999986 5788899999999997654332       01     


Q ss_pred             hhHHHhhc-hHHHHHHHhcCCCHHHHHHH
Q 010080          475 TKLVERED-GIDAMERFQFHENEDLRNMA  502 (518)
Q Consensus       475 ~~~ie~~g-gl~~l~~L~~~~~~~i~~~a  502 (518)
                      ..++.+.+ .-++|..|..|+++||+++.
T Consensus       225 ~~~~~e~~~~~~~l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  225 FSLFGESSQLAKKLQALANHPDPEVKEQV  253 (254)
T ss_pred             HHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence            13444444 45578889999999999874

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.48  E-value=2.6e-11  Score=122.84  Aligned_cols=404  Identities=14%  Similarity=0.089  Sum_probs=263.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQEETKALL--PALP  169 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~-~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~  169 (518)
                      ..|++..+.|+..+.+++...+ ++...+++.|.+|.|+.+++..+ ..+.+.+.+-++...+.+..+....++  ..+|
T Consensus        20 ~~dpe~lvrai~~~kN~vig~~-~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll   98 (678)
T KOG1293|consen   20 HLDPEQLVRAIYMSKNLVIGFT-DNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL   98 (678)
T ss_pred             cCCHHHHHHHHHHhcchhhcCC-CccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence            6788899999999999776654 44456899999999999998543 344555566666667777777777777  5899


Q ss_pred             HHHHhhcCCCC-HHHHHHHHHHHHhhhCCChhh--HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          170 LLIAHLGEKSS-SPVAEQCAWALGNVAGEGEEF--RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       170 ~Lv~lL~~~~~-~~v~~~a~~~L~nla~d~~~~--r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      .|+.+|.+ ++ ..+.+.++.++.+|-.-++..  ........+++.+..++..+.....+.-+.-.+++|..+..   .
T Consensus        99 ~Ll~LLs~-sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~h---q  174 (678)
T KOG1293|consen   99 KLLQLLSE-SDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDH---Q  174 (678)
T ss_pred             HHHHHhcC-cchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchh---h
Confidence            99999988 55 899999999999998755332  22222334455555554434445555556666667654322   2


Q ss_pred             hHHHhhchHHHHHHHhccCChhHHHHHHHHHH---HhhcCCchhhh----HHHhcCchHH-HHHHHccCCCccchhhhhh
Q 010080          247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVV---YLSALSNVATS----LLVKSGVLQL-LVERLATSNSLQLLIPVLR  318 (518)
Q Consensus       247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~L~~~~~~~~~----~~~~~g~~~~-Lv~lL~~~~~~~v~~~al~  318 (518)
                      -+...+++.+.+.-++.+.....+..++.+++   .+..+++....    ...+.|+.++ .+..|...++...+..++.
T Consensus       175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~  254 (678)
T KOG1293|consen  175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE  254 (678)
T ss_pred             heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence            24445677777777777777788999999999   66665554432    3345677664 3444445666666666677


Q ss_pred             hhhhhhcCCCcc-----cceeeccCC----------------C------------------------chhhhHHHHHHH-
Q 010080          319 SLGNLVAGDSST-----ISDVLVPGH----------------G------------------------ITDQVIAVLVKC-  352 (518)
Q Consensus       319 ~L~nl~~~~~~~-----~~~~i~~G~----------------~------------------------~~~~~l~~L~~l-  352 (518)
                      ++-++..++...     .....+.|.                .                        .+...++.+..+ 
T Consensus       255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell  334 (678)
T KOG1293|consen  255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL  334 (678)
T ss_pred             HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence            766665443100     000111110                0                        000011111111 


Q ss_pred             ---------------------------------------------------hccChhhhHHHHHHHHHHhccCCHHHHHH
Q 010080          353 ---------------------------------------------------LKSEHRVLKKEAAWVLSNIAAGSVEHKQL  381 (518)
Q Consensus       353 ---------------------------------------------------L~~~~~~i~~~a~~~Lsnl~~~~~~~~~~  381 (518)
                                                                         ..+.+...+..||.++-+++..-......
T Consensus       335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg  414 (678)
T KOG1293|consen  335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG  414 (678)
T ss_pred             HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                                               11122334444444444443322222222


Q ss_pred             HHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHH
Q 010080          382 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQF  461 (518)
Q Consensus       382 li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~  461 (518)
                      +-..++..+|++++..++..|+..+..+|+|++..-+          .....++..|+|..+.+++..+|+.+...++++
T Consensus       415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs----------~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~  484 (678)
T KOG1293|consen  415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS----------NLKSKFLRNNGIDILESMLTDPDFNSRANSLWV  484 (678)
T ss_pred             CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc----------cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence            3345789999999999999999999999999998531          234788999999999999999999999999999


Q ss_pred             HHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080          462 MELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE  512 (518)
Q Consensus       462 l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~  512 (518)
                      |++++-.+.+. .....-.--+-..|..+.++++.+|++++..++.++-.+
T Consensus       485 Lr~l~f~~de~-~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  485 LRHLMFNCDEE-EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHHHHhcchHH-HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            99998765432 111111112345677888999999999999999877644

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.48  E-value=3.9e-12  Score=119.78  Aligned_cols=196  Identities=20%  Similarity=0.187  Sum_probs=160.0

Q ss_pred             HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC
Q 010080          121 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG  198 (518)
Q Consensus       121 ~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~  198 (518)
                      +++++-+..|+.+|+...++..+..|..+++|.+..+ ...+.+.  |+++.+..+|.+ +++.+++.|+|+|.|++. +
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~-~   84 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSV-N   84 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCC-C
Confidence            4677888999999997776778788999999987644 3344443  899999999988 799999999999999998 4


Q ss_pred             hhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHH
Q 010080          199 EEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWV  276 (518)
Q Consensus       199 ~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~  276 (518)
                      .+++..+-.  .++.++..+.+.  +..++..++.+|.||+...+   ...++  .+.+|.++++|..++..++..++++
T Consensus        85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~---~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~  157 (254)
T PF04826_consen   85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND---YHHML--ANYIPDLLSLLSSGSEKTKVQVLKV  157 (254)
T ss_pred             hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc---hhhhH--HhhHHHHHHHHHcCChHHHHHHHHH
Confidence            566666543  477777755433  78999999999999986532   22343  4789999999999999999999999


Q ss_pred             HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080          277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD  327 (518)
Q Consensus       277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  327 (518)
                      |.+|+. ++.....++..+++..++.++..+.+.+++..++..+.||..+-
T Consensus       158 L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  158 LVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             HHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence            999998 56678888899999999999976667888999999999997653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.47  E-value=1.8e-11  Score=136.99  Aligned_cols=275  Identities=18%  Similarity=0.164  Sum_probs=211.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      ..+..++..+.++|+..+..|+..|.++-            ..+++|.|+..|..++ ..+...|+.+|..+....    
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----  683 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----  683 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----
Confidence            34445555667999999999999998842            1346889999996544 566677889998885321    


Q ss_pred             HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                          ...+.|...|.+ +++.|+..|+.+|+.+....            ...|+..|.+++..++..++++|..+-  . 
T Consensus       684 ----~~~~~L~~~L~~-~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~--~-  743 (897)
T PRK13800        684 ----PPAPALRDHLGS-PDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVD--D-  743 (897)
T ss_pred             ----CchHHHHHHhcC-CCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhccc--C-
Confidence                124577788877 78999999999999875322            345677888999999999999998752  1 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  321 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~  321 (518)
                                   .+.|..++.+++++|+..++.+|..+....         ...++.|..++ +++++.++..|+.+|+
T Consensus       744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll-~D~d~~VR~aA~~aLg  800 (897)
T PRK13800        744 -------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALT-GDPDPLVRAAALAALA  800 (897)
T ss_pred             -------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHh-cCCCHHHHHHHHHHHH
Confidence                         123567889999999999999999987532         23367788888 5778999999999999


Q ss_pred             hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChh
Q 010080          322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD  401 (518)
Q Consensus       322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~  401 (518)
                      ++-...                .+.+.+...|.++++.||..|+++|+.+...           ..++.|+.+|++.+..
T Consensus       801 ~~g~~~----------------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~  853 (897)
T PRK13800        801 ELGCPP----------------DDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLD  853 (897)
T ss_pred             hcCCcc----------------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHH
Confidence            874221                2456688889999999999999999987421           2568999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHH
Q 010080          402 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME  463 (518)
Q Consensus       402 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~  463 (518)
                      ||++|+++|..+.       +.|             ...+.|...|++.|+.+...+.++|.
T Consensus       854 VR~~A~~aL~~~~-------~~~-------------~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        854 VRKAAVLALTRWP-------GDP-------------AARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHHHHHHhccC-------CCH-------------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            9999999999872       111             13567888899999999999988875

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.41  E-value=3.1e-12  Score=107.43  Aligned_cols=113  Identities=25%  Similarity=0.482  Sum_probs=102.5

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      |++|.|+.+|.+ ++..+++.++|+|+|++.++++.+..+++.|++|.++.++.++++.++..++|+|+||+.+.  ...
T Consensus         7 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~   83 (120)
T cd00020           7 GGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP--EDN   83 (120)
T ss_pred             CChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc--HHH
Confidence            689999999987 67999999999999999988999999999999999999999999999999999999999764  233


Q ss_pred             hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080          246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS  281 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~  281 (518)
                      .+.+...|+++.+++++...+.+++..++|+|.+|+
T Consensus        84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            444556789999999999999999999999999987

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.40  E-value=3e-11  Score=130.57  Aligned_cols=316  Identities=19%  Similarity=0.171  Sum_probs=224.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH----------HhcC------CCChHHHH-HHHHHHHHHhc
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQ----------CLAF------GSPDEQLL-EAAWCLTNIAA  155 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~----------~L~~------~~~~~~~~-eA~~~L~nia~  155 (518)
                      .++.+.+..|-.+|.+++-.+..... .--+..+++.|=+          .|..      +.+..-+. .|+..|..++.
T Consensus       249 ~~~kear~~A~aALHNIVhSqPD~kr-~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF  327 (2195)
T KOG2122|consen  249 DEDKEARKRASAALHNIVHSQPDEKR-GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF  327 (2195)
T ss_pred             hhhHHHHHHHHHHHHHHhhcCcchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc
Confidence            34556778888888887655433211 1112223333321          1211      11222334 57777777776


Q ss_pred             CChHHHHHhc--CChHHHHHhhcC-----------CCCHHHHHHHHHHHHhhhCCChhhHHH-HHhcCChhHHHhhhCCC
Q 010080          156 GKQEETKALL--PALPLLIAHLGE-----------KSSSPVAEQCAWALGNVAGEGEEFRNV-LLSQGALPPLARMMLPN  221 (518)
Q Consensus       156 ~~~~~~~~v~--~~v~~Lv~lL~~-----------~~~~~v~~~a~~~L~nla~d~~~~r~~-~~~~g~i~~L~~ll~~~  221 (518)
                      + .+++.++-  |++..+-.||.-           +.+..++..+..+|.||.+....++.. +-..|+|..++..|.+.
T Consensus       328 D-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~  406 (2195)
T KOG2122|consen  328 D-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA  406 (2195)
T ss_pred             c-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC
Confidence            5 45666664  654444444321           123578999999999999765555544 44679999999999998


Q ss_pred             ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCChhHHHHHHHHHHHhhcCCchhhhHHHh-cCchHH
Q 010080          222 KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVK-SGVLQL  299 (518)
Q Consensus       222 ~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~~~~  299 (518)
                      ..++....+..|.||.-.-+ ....+++...|-+-.|+.. ++...+..+..++.+|.||+.+..++...++. .|.+..
T Consensus       407 peeL~QV~AsvLRNLSWRAD-~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaF  485 (2195)
T KOG2122|consen  407 PEELLQVYASVLRNLSWRAD-SNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAF  485 (2195)
T ss_pred             hHHHHHHHHHHHHhcccccc-ccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHH
Confidence            88999999999999996533 2344566667777777765 44555567788888888998877777777776 589999


Q ss_pred             HHHHHcc---CCCccchhhhhhhhhhhhcC---CCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080          300 LVERLAT---SNSLQLLIPVLRSLGNLVAG---DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  373 (518)
Q Consensus       300 Lv~lL~~---~~~~~v~~~al~~L~nl~~~---~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~  373 (518)
                      ||.+|.-   ++...++..+-.+|.|++..   .....|.+.      .++.|..|++.|.+..-.|..++|.+|.||.+
T Consensus       486 LVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR------~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA  559 (2195)
T KOG2122|consen  486 LVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILR------RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA  559 (2195)
T ss_pred             HHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHH------HhhHHHHHHHHhhhcceEEeecchhhhhhhhc
Confidence            9999952   23445666776777776543   333333333      46899999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080          374 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       374 ~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  417 (518)
                      .+++..+.|.+.|.++.|.+++.+....+-.-++.+|.|+..+.
T Consensus       560 R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  560 RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            99999999999999999999999999899999999999998753

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=8e-10  Score=118.95  Aligned_cols=392  Identities=14%  Similarity=0.106  Sum_probs=243.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHH
Q 010080           92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLL  171 (518)
Q Consensus        92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~L  171 (518)
                      .+.|++.+--|...+||++.+. -+.+..-.+..+-..|+..+.+...+.+...-+.++..|+++.-..  ..=+.++.|
T Consensus        47 ~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e--~WPell~~L  123 (1075)
T KOG2171|consen   47 TSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE--KWPELLQFL  123 (1075)
T ss_pred             cCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc--chHHHHHHH
Confidence            5788998888999999988763 2333344455666677777776665666666888888888654322  222467777


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhhCCChh-hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC-CCchhhHH
Q 010080          172 IAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD-PKPATELI  249 (518)
Q Consensus       172 v~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~i  249 (518)
                      ++...+ +++..||.|+.+|..+...... .+..+.  .+.+.+.+.+..++..++..++.++..++...+ .+...+. 
T Consensus       124 ~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~-  199 (1075)
T KOG2171|consen  124 FQSTKS-PNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK-  199 (1075)
T ss_pred             HHHhcC-CCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH-
Confidence            777777 8999999999999998764221 111111  123344455555555599999999988775431 2222222 


Q ss_pred             HhhchHHHHHHHh----ccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc-cCCCccchhhhhhhhhhh-
Q 010080          250 KVDGLLDAILRHL----KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA-TSNSLQLLIPVLRSLGNL-  323 (518)
Q Consensus       250 ~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~-~~~~~~v~~~al~~L~nl-  323 (518)
                       -...+|.++..+    ..+|.+....++-+|-.++...+..+.-.++ .+++....... +.-+..++..|+.+|..+ 
T Consensus       200 -~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~  277 (1075)
T KOG2171|consen  200 -FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLS  277 (1075)
T ss_pred             -HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence             235667666554    4666777777777777777654433321111 11111111111 001112222222222211 


Q ss_pred             -------------------------hcCCCc-------ccc------------eee-----cc-CCCchhhhHHHHHHHh
Q 010080          324 -------------------------VAGDSS-------TIS------------DVL-----VP-GHGITDQVIAVLVKCL  353 (518)
Q Consensus       324 -------------------------~~~~~~-------~~~------------~~i-----~~-G~~~~~~~l~~L~~lL  353 (518)
                                               +...++       .++            ..+     .. |+.+-.-+++.+-.++
T Consensus       278 e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l  357 (1075)
T KOG2171|consen  278 EYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAML  357 (1075)
T ss_pred             HhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHh
Confidence                                     111111       000            000     00 1112234556667778


Q ss_pred             ccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 010080          354 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS  433 (518)
Q Consensus       354 ~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~  433 (518)
                      .+.++.-|+.|..+||-++.|+.+++...++. +++..++.|+++++.||..|+.+|+-++.+-.          ..++.
T Consensus       358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~----------p~iqk  426 (1075)
T KOG2171|consen  358 QSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ----------PEIQK  426 (1075)
T ss_pred             cCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc----------HHHHH
Confidence            89999999999999999999999888886664 89999999999999999999999999987531          23444


Q ss_pred             HHhcCchHHHHHhhccCC-HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHH-HHHHHhcCCCHHHHHHHHHH
Q 010080          434 LVGRGCLSGFIDLVRSAD-IEAARLGLQFMELVLRGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNMANGL  505 (518)
Q Consensus       434 l~~~g~i~~L~~lL~~~d-~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~-~l~~L~~~~~~~i~~~a~~i  505 (518)
                      -...-+++.|+..+.+.. +++...+..++-+.++.+........+  -+-++ ++..|.+++.+.+++.+..-
T Consensus       427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvta  498 (1075)
T KOG2171|consen  427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTA  498 (1075)
T ss_pred             HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            455567889999998854 688888889999998876542111111  12234 56677888888888876433

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=1.6e-09  Score=116.69  Aligned_cols=359  Identities=15%  Similarity=0.104  Sum_probs=239.9

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC---hHHHHH
Q 010080           87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK---QEETKA  163 (518)
Q Consensus        87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~---~~~~~~  163 (518)
                      +++..+|+|+..+-.|+..|..+...-.+.....+  ..+.+.|.+.+..++.+ ++..|+.+++.++.-.   ....+.
T Consensus       123 L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~  199 (1075)
T KOG2171|consen  123 LFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDK  199 (1075)
T ss_pred             HHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHH
Confidence            44577899999999999999886654433221111  23566677777766655 6677999999888433   444555


Q ss_pred             hcCChHHHHHhhcC---CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhc
Q 010080          164 LLPALPLLIAHLGE---KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIK  238 (518)
Q Consensus       164 v~~~v~~Lv~lL~~---~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~  238 (518)
                      ....+|.++..+..   ..+.+....+..+|.-++...+.+-...+. .+|...+.+..+.  +..++..|.-++..+++
T Consensus       200 ~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e  278 (1075)
T KOG2171|consen  200 FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSE  278 (1075)
T ss_pred             HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence            55688887777653   245666778888888888755544332222 2455555666554  67888888888888887


Q ss_pred             CCCCCchhh-HHHhhchHHHHHHHhccC--C--------------hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHH
Q 010080          239 GPDPKPATE-LIKVDGLLDAILRHLKRA--D--------------EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLV  301 (518)
Q Consensus       239 ~~~~~~~~~-~i~~~~~l~~L~~lL~~~--d--------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv  301 (518)
                      . .|.-++. .-.....++.++.++...  |              +.--..+..+|-.++.+-+..  .+ -.-+++.+-
T Consensus       279 ~-Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v-~p~~~~~l~  354 (1075)
T KOG2171|consen  279 Y-APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QV-LPPLFEALE  354 (1075)
T ss_pred             h-hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--he-hHHHHHHHH
Confidence            6 2221111 002346677777776521  1              012344555666666532111  00 112234444


Q ss_pred             HHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHH
Q 010080          302 ERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL  381 (518)
Q Consensus       302 ~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~  381 (518)
                      .+| .+.+..-+..++.+|+.++.|..+.....++       .+++.+++.|.+++|.||..||.+++.++..-...++.
T Consensus       355 ~~l-~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-------~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk  426 (1075)
T KOG2171|consen  355 AML-QSTEWKERHAALLALSVIAEGCSDVMIGNLP-------KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK  426 (1075)
T ss_pred             HHh-cCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-------HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence            555 5889999999999999999998877666554       68899999999999999999999999999987777777


Q ss_pred             HHhCCCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchH-HHHHhhccCCHHHHHHHH
Q 010080          382 IHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS-GFIDLVRSADIEAARLGL  459 (518)
Q Consensus       382 li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~-~L~~lL~~~d~~~~~~~l  459 (518)
                      -...-++|.|+..+.+ .+++|+..|+-++-|++....     +..+..+...     ++. .|.-++.++.+.++..+.
T Consensus       427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-----~~~l~pYLd~-----lm~~~l~~L~~~~~~~v~e~vv  496 (1075)
T KOG2171|consen  427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-----KSILEPYLDG-----LMEKKLLLLLQSSKPYVQEQAV  496 (1075)
T ss_pred             HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-----HHHHHHHHHH-----HHHHHHHHHhcCCchhHHHHHH
Confidence            7677788899999966 567999999999999977532     1111122222     334 444566677788999999


Q ss_pred             HHHHHHHccCCC
Q 010080          460 QFMELVLRGMPN  471 (518)
Q Consensus       460 ~~l~~il~~~~~  471 (518)
                      .+|..+...+++
T Consensus       497 taIasvA~AA~~  508 (1075)
T KOG2171|consen  497 TAIASVADAAQE  508 (1075)
T ss_pred             HHHHHHHHHHhh
Confidence            999999876543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.36  E-value=3.6e-10  Score=126.64  Aligned_cols=277  Identities=16%  Similarity=0.170  Sum_probs=212.9

Q ss_pred             HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080          123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  202 (518)
Q Consensus       123 ~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  202 (518)
                      ....++.|+++|.+++ +.++..|+.+|..+...         .++|.|+..|.+ ++..|+..|+.+|+.+....+   
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~~---------~~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTPP---------GFGPALVAALGD-GAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcch---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccC---
Confidence            4567788999997554 66777788888877531         257889999976 789999999999998853211   


Q ss_pred             HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                             ..+.|...|+++++.++..++.+|..+-.+              -.+.|+..|.++|+.++..++++|..+-.
T Consensus       685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~  743 (897)
T PRK13800        685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAG--------------DAALFAAALGDPDHRVRIEAVRALVSVDD  743 (897)
T ss_pred             -------chHHHHHHhcCCCHHHHHHHHHHHHhhccC--------------CHHHHHHHhcCCCHHHHHHHHHHHhcccC
Confidence                   235677888888999999999988887421              12346678899999999999999987632


Q ss_pred             CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080          283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  362 (518)
Q Consensus       283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~  362 (518)
                                    .+.|..++ .+++..++..+..+|+.+....               ...++.|..++.++++.+|.
T Consensus       744 --------------~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~---------------~~~~~~L~~ll~D~d~~VR~  793 (897)
T PRK13800        744 --------------VESVAGAA-TDENREVRIAVAKGLATLGAGG---------------APAGDAVRALTGDPDPLVRA  793 (897)
T ss_pred             --------------cHHHHHHh-cCCCHHHHHHHHHHHHHhcccc---------------chhHHHHHHHhcCCCHHHHH
Confidence                          13355666 5889999999999999885432               12578899999999999999


Q ss_pred             HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHH
Q 010080          363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG  442 (518)
Q Consensus       363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~  442 (518)
                      .|+.+|+++....          .+++.++..|.+.++.||..|+++|..+...                     ..++.
T Consensus       794 aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~---------------------~a~~~  842 (897)
T PRK13800        794 AALAALAELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD---------------------VAVPA  842 (897)
T ss_pred             HHHHHHHhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc---------------------chHHH
Confidence            9999999984321          1335688889999999999999999887321                     14688


Q ss_pred             HHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080          443 FIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD  507 (518)
Q Consensus       443 L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~  507 (518)
                      |..+|.++++.+...+..+|..+ ..  +         ....+.|..+..+++.+|+..|...|+
T Consensus       843 L~~~L~D~~~~VR~~A~~aL~~~-~~--~---------~~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        843 LVEALTDPHLDVRKAAVLALTRW-PG--D---------PAARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhcc-CC--C---------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            99999999999999999988875 11  1         112456778889999999999988775

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.34  E-value=3.5e-13  Score=107.25  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=54.4

Q ss_pred             CCccCccccccccccc-CchHHhhh-HHHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHHhhhHHH
Q 010080            3 DDSLNHHKRDPIKSSV-GNVAAQRR-RQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSA   80 (518)
Q Consensus         3 ~~~~~~~r~~~~k~~~-~~~~~~rr-~~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (518)
                      +.+.++.|++.||++| +.++.||| .+..|+|||+||||+|.|||+.  .....+..+...+..   .    .......
T Consensus         2 ~~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~--~~~~~~~~~~~~~~~---~----~~~~~~~   72 (97)
T PF01749_consen    2 SSKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNI--NMADEESSSEESESD---Q----NSSAQQL   72 (97)
T ss_dssp             -----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT--------------------------TCCCCS-
T ss_pred             CccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcccccccccccc---c----ccccccc
Confidence            3567899999999986 55555444 5699999999999999999963  222211111000000   0    0001122


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRE  105 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~  105 (518)
                      ...++.++.+++|+|+..++.|++.
T Consensus        73 ~~~l~~~v~~v~S~d~~~ql~Atq~   97 (97)
T PF01749_consen   73 NEELPEMVAGVNSDDPEVQLEATQQ   97 (97)
T ss_dssp             -HHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             ccccHHHHHhcCCCCHHHHHHhhCC
Confidence            3566667777889999999999863

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.32  E-value=2.3e-09  Score=114.28  Aligned_cols=327  Identities=16%  Similarity=0.151  Sum_probs=233.5

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      .++.+.+...+ .+...+.+++..+-.+...+.+.       +-+.+..++++.+++ ...++-+.-++..+...+++..
T Consensus         7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~   77 (526)
T PF01602_consen    7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELL   77 (526)
T ss_dssp             HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHH
T ss_pred             HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHH
Confidence            45666665333 47888999998888876665432       357888888888544 4555557777888887777622


Q ss_pred             HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                      .   -++..+.+=|.+ +++.++..|+.+|++++.  ++..+.     .++.+.+++.++++.+++.|+-++..+.+.. 
T Consensus        78 ~---l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-  145 (526)
T PF01602_consen   78 I---LIINSLQKDLNS-PNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKD-  145 (526)
T ss_dssp             H---HHHHHHHHHHCS-SSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-
T ss_pred             H---HHHHHHHHhhcC-CCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccC-
Confidence            2   356677777877 799999999999999984  444433     4788889999999999999999999999753 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  321 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~  321 (518)
                      |.    .+... +++.+.+++.+.|+.++..|+.++..+ ..++.... -.-...++.|..++ ...++-.+..+++++.
T Consensus       146 p~----~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~  217 (526)
T PF01602_consen  146 PD----LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLL-SDPDPWLQIKILRLLR  217 (526)
T ss_dssp             HC----CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHH-TCCSHHHHHHHHHHHT
T ss_pred             HH----HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcc-cccchHHHHHHHHHHH
Confidence            22    32223 799999999999999999999999999 22222211 11234455555555 4678888889999999


Q ss_pred             hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChh
Q 010080          322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD  401 (518)
Q Consensus       322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~  401 (518)
                      .++...+.....         ..+++.+..++.+.++.|..+|+.++..+.... .     .-..+++.|..+|.+.++.
T Consensus       218 ~~~~~~~~~~~~---------~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~~~n  282 (526)
T PF01602_consen  218 RYAPMEPEDADK---------NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSSDPN  282 (526)
T ss_dssp             TSTSSSHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSSSHH
T ss_pred             hcccCChhhhhH---------HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcccch
Confidence            887655432210         248889999999999999999999999886543 3     2223688999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHc
Q 010080          402 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR  467 (518)
Q Consensus       402 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~  467 (518)
                      ++.-|+.+|..++...      |       ..+ . ..-..+..+..++|..++..+++.|..+..
T Consensus       283 vr~~~L~~L~~l~~~~------~-------~~v-~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  283 VRYIALDSLSQLAQSN------P-------PAV-F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             HHHHHHHHHHHHCCHC------H-------HHH-G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred             hehhHHHHHHHhhccc------c-------hhh-h-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence            9999999999998631      1       122 2 222223333447889999999999998874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=2.5e-10  Score=115.51  Aligned_cols=309  Identities=15%  Similarity=0.178  Sum_probs=202.7

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc------CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC
Q 010080          125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG  198 (518)
Q Consensus       125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~------~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~  198 (518)
                      .++|.|+++|.+++.. .+-.|..+|..|+.++.+..+.-+      -.+|.|+.+.++ +++.+|..|+.|+..+....
T Consensus       128 elLp~L~~~L~s~d~n-~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYN-TCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hHHHHHHHHhcCCccc-ccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecC
Confidence            4789999999976633 223499999999988776555432      279999999987 79999999999999877643


Q ss_pred             hhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHH
Q 010080          199 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV  278 (518)
Q Consensus       199 ~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~  278 (518)
                      .+.-..-+ ...+..|..+-...+++++.+.+.+|..|..-...+....   ..++++++++..++.|++|..+||-...
T Consensus       206 ~qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph---l~~IveyML~~tqd~dE~VALEACEFwl  281 (885)
T KOG2023|consen  206 TQALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH---LDNIVEYMLQRTQDVDENVALEACEFWL  281 (885)
T ss_pred             cHHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc---hHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence            32221111 2346666677677799999999999999986532121111   3478888888888999999999999999


Q ss_pred             HhhcCCchhhhHHHh---cCchHHHHHHHc---------cCCC-------------------------------------
Q 010080          279 YLSALSNVATSLLVK---SGVLQLLVERLA---------TSNS-------------------------------------  309 (518)
Q Consensus       279 ~L~~~~~~~~~~~~~---~g~~~~Lv~lL~---------~~~~-------------------------------------  309 (518)
                      .++..+  ....++.   ..++|.|+.-+.         .+.+                                     
T Consensus       282 a~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe  359 (885)
T KOG2023|consen  282 ALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDE  359 (885)
T ss_pred             HHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccc
Confidence            999754  3333322   123333333221         0000                                     


Q ss_pred             ---------ccc---hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHH
Q 010080          310 ---------LQL---LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE  377 (518)
Q Consensus       310 ---------~~v---~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~  377 (518)
                               ..+   ...++-+|+|+...      .++       .-++|.|...|.++...+|+.+..+++.|+.|+  
T Consensus       360 ~DDdD~~~dWNLRkCSAAaLDVLanvf~~------elL-------~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc--  424 (885)
T KOG2023|consen  360 DDDDDAFSDWNLRKCSAAALDVLANVFGD------ELL-------PILLPLLKEHLSSEEWKVREAGVLALGAIAEGC--  424 (885)
T ss_pred             cccccccccccHhhccHHHHHHHHHhhHH------HHH-------HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH--
Confidence                     000   11222223332111      111       235666666777888999999999999999876  


Q ss_pred             HHHHHHhC--CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHH
Q 010080          378 HKQLIHSS--EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA  455 (518)
Q Consensus       378 ~~~~li~~--~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~  455 (518)
                       .+.++.+  .++|.|+.+|.+..+-||+.+||+|+..+..-...  .+   +++...     ++..|+..+-+++.+++
T Consensus       425 -M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~--~~---~~~f~p-----vL~~ll~~llD~NK~VQ  493 (885)
T KOG2023|consen  425 -MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD--SR---DEYFKP-----VLEGLLRRLLDSNKKVQ  493 (885)
T ss_pred             -hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC--Ch---HhhhHH-----HHHHHHHHHhcccHHHH
Confidence             2333333  37999999999999999999999999986642100  00   122222     34555555556788888


Q ss_pred             HHHHHHHHHHHc
Q 010080          456 RLGLQFMELVLR  467 (518)
Q Consensus       456 ~~~l~~l~~il~  467 (518)
                      +.++.++..+-+
T Consensus       494 EAAcsAfAtleE  505 (885)
T KOG2023|consen  494 EAACSAFATLEE  505 (885)
T ss_pred             HHHHHHHHHHHH
Confidence            888777765543

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.26  E-value=2.1e-09  Score=114.53  Aligned_cols=368  Identities=16%  Similarity=0.146  Sum_probs=216.1

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CCh
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PAL  168 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v  168 (518)
                      .+.++++..+-.|+.++.++....++-    +-.. .+|.+.++|...+ +.++..|+.++..+ ...++....++ ..+
T Consensus       122 ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~-~~~~l~~lL~d~~-~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~  194 (526)
T PF01602_consen  122 LLSDPSPYVRKKAALALLKIYRKDPDL----VEDE-LIPKLKQLLSDKD-PSVVSAALSLLSEI-KCNDDSYKSLIPKLI  194 (526)
T ss_dssp             HHHSSSHHHHHHHHHHHHHHHHHCHCC----HHGG-HHHHHHHHTTHSS-HHHHHHHHHHHHHH-HCTHHHHTTHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHhccCHHH----HHHH-HHHHHhhhccCCc-chhHHHHHHHHHHH-ccCcchhhhhHHHHH
Confidence            445778888888888888876653321    2223 7888999996544 66667788888888 22222211222 355


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080          169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL  248 (518)
Q Consensus       169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  248 (518)
                      ..|.+++.. .++-++..++.+|..++...+...+.   ...++.+..++++.+..+.-.++.++..+...    .  ..
T Consensus       195 ~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~----~--~~  264 (526)
T PF01602_consen  195 RILCQLLSD-PDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS----P--EL  264 (526)
T ss_dssp             HHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----H--HH
T ss_pred             HHhhhcccc-cchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc----h--HH
Confidence            555666555 67888889999999988766555422   44577777777777788888888888877532    1  12


Q ss_pred             HHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC
Q 010080          249 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  328 (518)
Q Consensus       249 i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  328 (518)
                        ...+++.|.+++.+.++.++..++.+|..++...+..   +.   .....+..+..+++..++..++.++.+++...+
T Consensus       265 --~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~---v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n  336 (526)
T PF01602_consen  265 --LQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA---VF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESN  336 (526)
T ss_dssp             --HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH---HG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred             --HHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh---hh---hhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence              3577888888888888888888888888887643111   11   111112223224445555555555555553321


Q ss_pred             cccceeecc--------C-------------------CCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHH
Q 010080          329 STISDVLVP--------G-------------------HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL  381 (518)
Q Consensus       329 ~~~~~~i~~--------G-------------------~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~  381 (518)
                      ..  .+++.        +                   .....-.++.++.++......+..++...+.++....++....
T Consensus       337 ~~--~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~  414 (526)
T PF01602_consen  337 VK--EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK  414 (526)
T ss_dssp             HH--HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH
T ss_pred             hh--hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH
Confidence            10  00000        0                   0000123444444444444444444444454444333222211


Q ss_pred             HHhCCCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080          382 IHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ  460 (518)
Q Consensus       382 li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~  460 (518)
                           ++..|++.+.+ .++.+++.++|+++..+......        +..     ...+..+.+.+...++.++..++.
T Consensus       415 -----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~--------~~~-----~~~~~~l~~~~~~~~~~vk~~ilt  476 (526)
T PF01602_consen  415 -----ILKKLIELLEDISSPEALAAAIWILGEYGELIENT--------ESA-----PDILRSLIENFIEESPEVKLQILT  476 (526)
T ss_dssp             -----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTT--------THH-----HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCccccc--------ccH-----HHHHHHHHHhhccccHHHHHHHHH
Confidence                 36677777754 67789999999999886532100        001     113445555555566778888999


Q ss_pred             HHHHHHccCCCCcchhHHHhhchHHHHHHHhc--CCCHHHHHHHHHHHH
Q 010080          461 FMELVLRGMPNHEGTKLVEREDGIDAMERFQF--HENEDLRNMANGLVD  507 (518)
Q Consensus       461 ~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~--~~~~~i~~~a~~il~  507 (518)
                      ++..+....+......     ..++.+..+..  +.|.+|+++|...+.
T Consensus       477 ~~~Kl~~~~~~~~~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~  520 (526)
T PF01602_consen  477 ALAKLFKRNPENEVQN-----EILQFLLSLATEDSSDPEVRDRAREYLR  520 (526)
T ss_dssp             HHHHHHHHSCSTTHHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCchhhHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            9988887654321111     23456677777  889999999987654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.20  E-value=4.7e-09  Score=106.72  Aligned_cols=370  Identities=14%  Similarity=0.094  Sum_probs=223.1

Q ss_pred             HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010080           81 VEELKSAVAYHGKGA-MQKRVNALRELRRLLSRFEFPPI-ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ  158 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~-~~~~~~a~~~lr~lls~~~~~~~-~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~  158 (518)
                      ...+.++++.+.+.| .......++++|.+++..+..+. .......+++.+.-++..+. ....+.-+....+. ++.+
T Consensus        94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l-k~~~~l~~~~~a~~-s~~~  171 (678)
T KOG1293|consen   94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL-KYISRLDVSRAAHL-SSTK  171 (678)
T ss_pred             HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh-hhhhhhhhhhhccc-cccc
Confidence            456677778888888 55666777999999887654433 23334667777777766222 21222223333334 4444


Q ss_pred             HHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHH---hhhCCChhhHHH----HHhcCChh--HHHhhhCCCChhHHHH
Q 010080          159 EETKALL-PALPLLIAHLGEKSSSPVAEQCAWALG---NVAGEGEEFRNV----LLSQGALP--PLARMMLPNKGSTVRT  228 (518)
Q Consensus       159 ~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~---nla~d~~~~r~~----~~~~g~i~--~L~~ll~~~~~~~~~~  228 (518)
                      ++...+. .+++-=+.++.......++.+|..++.   ++...++.....    ....|+.+  .+.+++++++.+.+-.
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence            4443333 344444444433356789999999999   887766654433    34456555  5667888888888888


Q ss_pred             HHHHHHHhhcCCC---CCchhhHHHhhc--hH-H-----------------------HHHHHhc------cC-C-hhHHH
Q 010080          229 AAWALSNLIKGPD---PKPATELIKVDG--LL-D-----------------------AILRHLK------RA-D-EELTT  271 (518)
Q Consensus       229 a~~~L~nL~~~~~---~~~~~~~i~~~~--~l-~-----------------------~L~~lL~------~~-d-~~v~~  271 (518)
                      ++.++.++++...   |.+-.......|  .+ .                       .+..+..      ++ + .+...
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence            8899998887641   111111111111  00 0                       0000000      00 0 12233


Q ss_pred             HHHHHHHHhhcCCchhhhHHHhcCchH----------------------HHHHHHccCCCccchhhhhhhhhhhhcCCCc
Q 010080          272 EVAWVVVYLSALSNVATSLLVKSGVLQ----------------------LLVERLATSNSLQLLIPVLRSLGNLVAGDSS  329 (518)
Q Consensus       272 ~a~~~L~~L~~~~~~~~~~~~~~g~~~----------------------~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~  329 (518)
                      ..+.+-+.+..+.+.+....+....++                      .+..+. -+.+...+..+|-++-+++..-+.
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~-~~kd~~~~aaa~l~~~s~srsV~a  410 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLP-PIKDHDFVAAALLCLKSFSRSVSA  410 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHHHHHHHHHH
Confidence            334444444443333332222111110                      111111 134555666777666666533211


Q ss_pred             ccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHH
Q 010080          330 TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV  409 (518)
Q Consensus       330 ~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~a  409 (518)
                           ++.| .-...+..+|++++..+...|...+..+|.|+.-........++..|++..+..++.+.++.+++.+.|+
T Consensus       411 -----L~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~  484 (678)
T KOG1293|consen  411 -----LRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWV  484 (678)
T ss_pred             -----HHcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence                 1111 0123588899999988888999999999999998766778889999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCCCchhHHHHHHHHH-hcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          410 LGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       410 L~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      |.++..++.          +-.+... ..=.-..+..+.+++|+.+++.++..+.|+....
T Consensus       485 Lr~l~f~~d----------e~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  485 LRHLMFNCD----------EEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             HHHHHhcch----------HHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            999988642          2222222 2223445666777899999999999999998754

>PTZ00429 beta-adaptin; Provisional

Probab=99.20  E-value=5.7e-08  Score=104.86  Aligned_cols=291  Identities=15%  Similarity=0.095  Sum_probs=204.5

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      .+|...|+   +.+...+.+|++.+-.+...+.+-       +.+.|-.+.++.+++ ..++.-....+.+++...++..
T Consensus        35 ~ELr~~L~---s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         35 AELQNDLN---GTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             HHHHHHHH---CCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence            45666554   778888999998887777666422       336677777887665 4454557778888887666533


Q ss_pred             HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                         +-++..|.+=+.+ +|+.+|-.|+.+|++|-.  +..-+.     .++++.+.+.+.++.+++.|+.++..+.+.. 
T Consensus       104 ---lLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-  171 (746)
T PTZ00429        104 ---LLAVNTFLQDTTN-SSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-  171 (746)
T ss_pred             ---HHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-
Confidence               3356777887877 799999999999999875  233222     4567788888899999999999999998643 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  321 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~  321 (518)
                      |.    .+...++++.|..+|.+.|+.|+.+|+.+|..+....+....  ...+.+..++..|. .-++=.+...+.+|.
T Consensus       172 pe----lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~-e~~EW~Qi~IL~lL~  244 (746)
T PTZ00429        172 MQ----LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLP-ECNEWGQLYILELLA  244 (746)
T ss_pred             cc----cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhh-cCChHHHHHHHHHHH
Confidence            32    333568999999999999999999999999999875443332  34566777777774 334444556666665


Q ss_pred             hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCCh
Q 010080          322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPF  400 (518)
Q Consensus       322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~  400 (518)
                      .....++   ...        ..++..+...|.|.++.|.-+|+.++-+++.. .++.++.+.. .+-++|+.++ ++++
T Consensus       245 ~y~P~~~---~e~--------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~  311 (746)
T PTZ00429        245 AQRPSDK---ESA--------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDA  311 (746)
T ss_pred             hcCCCCc---HHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCc
Confidence            4322221   111        24788888899999999999999999999754 2343333322 2446677764 5567


Q ss_pred             hHHHHHHHHHHHhcC
Q 010080          401 DIKKEVAYVLGNLCV  415 (518)
Q Consensus       401 ~v~~eA~~aL~nl~~  415 (518)
                      .+|.-++..|.-++.
T Consensus       312 eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        312 ETQYIVCKNIHALLV  326 (746)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            888888877766654

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.18  E-value=1.5e-08  Score=101.84  Aligned_cols=321  Identities=14%  Similarity=0.116  Sum_probs=214.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-----CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010080           83 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKA-----GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK  157 (518)
Q Consensus        83 ~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~-----g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~  157 (518)
                      -+..++..  ..+.+..-..+.-+-.++...+ .....+.+.     .....++.+|..++ .-++..|+.+|+.+.+..
T Consensus        57 ~~l~ll~~--~~~~d~vqyvL~Li~dll~~~~-~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          57 TFVNLLSQ--IDKDDTVRYVLTLIDDMLQEDD-TRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHhc--cCcHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcC
Confidence            34445542  3445666667777778777642 222334432     46677888887654 345566999999998644


Q ss_pred             hHHHHH-hcC-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHH
Q 010080          158 QEETKA-LLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWAL  233 (518)
Q Consensus       158 ~~~~~~-v~~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L  233 (518)
                      ...... ... .++.|...|.++.+...+..|+.+|.++.. .+++|..+.+.+++++|+.+|+..  ...++-.++.|+
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            322111 111 344566666654457888999999999988 679999999999999999999853  568889999999


Q ss_pred             HHhhcCCCCCchhhHHHhhchHHHHHHHhcc-CChhHHHHHHHHHHHhhcCC------chhhhHHHhcCchHHHHHHHcc
Q 010080          234 SNLIKGPDPKPATELIKVDGLLDAILRHLKR-ADEELTTEVAWVVVYLSALS------NVATSLLVKSGVLQLLVERLAT  306 (518)
Q Consensus       234 ~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~------~~~~~~~~~~g~~~~Lv~lL~~  306 (518)
                      +-|+....   ..+.....+.+|.++.++.. .-+.+..-++.+|.|+...+      ......+++.|+.+.+-.+...
T Consensus       212 WlLSF~~~---~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r  288 (429)
T cd00256         212 WLLTFNPH---AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR  288 (429)
T ss_pred             HHHhccHH---HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence            99986532   22333456899999999984 45678899999999999732      1234566777765544443321


Q ss_pred             -CCCccchhhhhhhhhhhh--------cCCCcccceeeccCCC---------------------chhhhHHHHHHHhc-c
Q 010080          307 -SNSLQLLIPVLRSLGNLV--------AGDSSTISDVLVPGHG---------------------ITDQVIAVLVKCLK-S  355 (518)
Q Consensus       307 -~~~~~v~~~al~~L~nl~--------~~~~~~~~~~i~~G~~---------------------~~~~~l~~L~~lL~-~  355 (518)
                       -.++++. ..+..|....        +.+.....  +..|..                     -+-.++..|+.+|. +
T Consensus       289 k~~DedL~-edl~~L~e~L~~~~k~ltsfD~Y~~E--l~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s  365 (429)
T cd00256         289 KYDDEDLT-DDLKFLTEELKNSVQDLSSFDEYKSE--LRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETS  365 (429)
T ss_pred             CCCcHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHH--HhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence             1233332 2222222221        11100000  011110                     02356788999994 5


Q ss_pred             ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       356 ~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                      .++.+..-||.=|+.++...|.....+-+.|+=..++++|.++|++||++|..|+.-+.
T Consensus       366 ~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         366 VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            67888889999999999988777777778899999999999999999999999987764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.17  E-value=2.4e-08  Score=100.30  Aligned_cols=332  Identities=14%  Similarity=0.123  Sum_probs=224.0

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc-----CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-----GALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-----g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                      .+..|+.+|...++.++.+..+-.+.-+..+++.....+.+.     ....+++.+|..++.-+...++..|+.+.... 
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-  132 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG-  132 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC-
Confidence            466777888777788888888888888888776655555553     46677888998888889999999999887542 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccC-ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC-Cccchhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRS  319 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~-~~~v~~~al~~  319 (518)
                      +...... ...-.++.|...+.+. +...+..+..+|..|.. .++....+.+.++++.|+.+|.... +.+.+-.++-|
T Consensus       133 ~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         133 LAKMEGS-DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             ccccchh-HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            1111111 0112444556666544 35677777888999887 4556777778889999999996433 44666678888


Q ss_pred             hhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCC------HHHHHHHHhCCCHHHHH
Q 010080          320 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGS------VEHKQLIHSSEALALLL  392 (518)
Q Consensus       320 L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~------~~~~~~li~~~~i~~Li  392 (518)
                      +.-++...+ ......      ..++++.|+.++... +.++.+-+..++.|+...+      ......+++.|+++.+-
T Consensus       211 lWlLSF~~~-~~~~~~------~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~  283 (429)
T cd00256         211 IWLLTFNPH-AAEVLK------RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQ  283 (429)
T ss_pred             HHHHhccHH-HHHhhc------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHH
Confidence            887776654 222222      246999999999754 5688999999999998742      22344567777766555


Q ss_pred             HHhc--CCChhHHHHHHHHH-------HHhcCCCC-----CCCC---Cchh-----HHHHHHHHHhc--CchHHHHHhhc
Q 010080          393 HLLS--TSPFDIKKEVAYVL-------GNLCVSPT-----EGEG---KPKL-----IQEHLVSLVGR--GCLSGFIDLVR  448 (518)
Q Consensus       393 ~lL~--~~~~~v~~eA~~aL-------~nl~~~~~-----~~~~---~~~~-----~~~~~~~l~~~--g~i~~L~~lL~  448 (518)
                      .+..  -.|+++.......-       ..+++..+     .+|.   +|-+     -.++...+-+.  .+++.|+++|.
T Consensus       284 ~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~  363 (429)
T cd00256         284 SLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLE  363 (429)
T ss_pred             HHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            5442  25666543322211       11221000     0000   1110     02444455544  36889999995


Q ss_pred             -cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          449 -SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       449 -~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                       +.|+.++.+|+-=|..+.+..|.  ++..+++.||-+.+-+|..|+|++|+..|..-+.+..
T Consensus       364 ~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         364 TSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             cCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence             67888888888888888888765  5788899999999999999999999999977776654

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=6.7e-09  Score=105.37  Aligned_cols=400  Identities=15%  Similarity=0.159  Sum_probs=243.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHHc--C--CHHHHHHHh-cCC------C-ChHHH-H
Q 010080           80 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFE--FPPIETALKA--G--AIPVLVQCL-AFG------S-PDEQL-L  144 (518)
Q Consensus        80 ~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~--~~~~~~~i~~--g--~ip~Lv~~L-~~~------~-~~~~~-~  144 (518)
                      .+.++.++++.-.|+|.+.+..+...+.++-....  |.-+...++.  .  ....+..+| +.+      . ++..+ +
T Consensus        11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~y   90 (885)
T KOG2023|consen   11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDY   90 (885)
T ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHH
Confidence            35678888888889999999988888877544221  1111111111  0  111222222 210      0 11111 2


Q ss_pred             HHHHHHHHHhcCChHHHHHhc-----------------CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHh
Q 010080          145 EAAWCLTNIAAGKQEETKALL-----------------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS  207 (518)
Q Consensus       145 eA~~~L~nia~~~~~~~~~v~-----------------~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~  207 (518)
                      -=..+|.++...++ ...+.+                 ..+|.|..+|.+ ++...+|-|..+|..||.|+.+.-+.-..
T Consensus        91 iKs~~l~~lgd~~~-lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~  168 (885)
T KOG2023|consen   91 IKSECLHGLGDASP-LIRATVGIVITTIASTGGLQHWPELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVL  168 (885)
T ss_pred             HHHHHHhhccCchH-HHHhhhhheeeeeecccccccchhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcc
Confidence            23455666654433 222221                 168899999988 67789999999999999999876554221


Q ss_pred             ----cCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC
Q 010080          208 ----QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL  283 (518)
Q Consensus       208 ----~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  283 (518)
                          .-.||.++++.+++++.++..|+.|+-.+.-.. ++.  -++....++..+..+-++++++|+...|.+|.+|.+-
T Consensus       169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~qa--l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev  245 (885)
T KOG2023|consen  169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQA--LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV  245 (885)
T ss_pred             cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-cHH--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence                135788889999999999999999998766432 221  1333457888888888899999999999999999974


Q ss_pred             CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-------
Q 010080          284 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-------  356 (518)
Q Consensus       284 ~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-------  356 (518)
                      .++...--. .++++.++..- +..+.+|...||-..-.++....  -..++..   .-..++|+|++-+..+       
T Consensus       246 r~dkl~phl-~~IveyML~~t-qd~dE~VALEACEFwla~aeqpi--~~~~L~p---~l~kliPvLl~~M~Ysd~D~~LL  318 (885)
T KOG2023|consen  246 RPDKLVPHL-DNIVEYMLQRT-QDVDENVALEACEFWLALAEQPI--CKEVLQP---YLDKLIPVLLSGMVYSDDDIILL  318 (885)
T ss_pred             cHHhcccch-HHHHHHHHHHc-cCcchhHHHHHHHHHHHHhcCcC--cHHHHHH---HHHHHHHHHHccCccccccHHHh
Confidence            443321111 24555555544 45667788888888777775541  1111100   0123555554422111       


Q ss_pred             -------------------------------------------------hhhhHHHHHHHHHHhccCCHHHHHHHHhCCC
Q 010080          357 -------------------------------------------------HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA  387 (518)
Q Consensus       357 -------------------------------------------------~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~  387 (518)
                                                                       +.++|+.++.+|.-++.-..+   .++.. +
T Consensus       319 ~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~~-l  394 (885)
T KOG2023|consen  319 KNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLPI-L  394 (885)
T ss_pred             cCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH---HHHHH-H
Confidence                                                             134565555555444432212   22222 5


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc--CchHHHHHhhccCCHHHHHHHHHHHHHH
Q 010080          388 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR--GCLSGFIDLVRSADIEAARLGLQFMELV  465 (518)
Q Consensus       388 i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~--g~i~~L~~lL~~~d~~~~~~~l~~l~~i  465 (518)
                      +|.|-+.|.+.+..+|+.++.|++-++.++             .+.++..  ..+|.|+.+|.++.+-+....++.|...
T Consensus       395 ~PlLk~~L~~~~W~vrEagvLAlGAIAEGc-------------M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRy  461 (885)
T KOG2023|consen  395 LPLLKEHLSSEEWKVREAGVLALGAIAEGC-------------MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRY  461 (885)
T ss_pred             HHHHHHHcCcchhhhhhhhHHHHHHHHHHH-------------hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhh
Confidence            777777788889999999999999998743             1222222  3689999999999998888888888876


Q ss_pred             HccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          466 LRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       466 l~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                      -......+....+..  .++.|-+-.-+.|+.+++.|+....++-
T Consensus       462 s~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtle  504 (885)
T KOG2023|consen  462 SKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLE  504 (885)
T ss_pred             hhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            543221111122211  1222333346789999999988777653

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1e-08  Score=105.61  Aligned_cols=358  Identities=15%  Similarity=0.187  Sum_probs=225.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCC-------------CCCcH-HHHH---HcCCHHHHHHHhcCCC------ChHHHHH
Q 010080           89 AYHGKGAMQKRVNALRELRRLLSRF-------------EFPPI-ETAL---KAGAIPVLVQCLAFGS------PDEQLLE  145 (518)
Q Consensus        89 ~~~~s~~~~~~~~a~~~lr~lls~~-------------~~~~~-~~~i---~~g~ip~Lv~~L~~~~------~~~~~~e  145 (518)
                      ..++|++.+..++|+.-+......+             .-||. ..+.   -.+++|.|+++|...+      ....-..
T Consensus       266 ~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA  345 (859)
T KOG1241|consen  266 AAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA  345 (859)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence            3567999999999998777522111             11221 1111   1478999999997421      1123345


Q ss_pred             HHHHHHHHhcCChHHHHHhcC-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChh
Q 010080          146 AAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS  224 (518)
Q Consensus       146 A~~~L~nia~~~~~~~~~v~~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~  224 (518)
                      |.-||.-++.   ...+.++. .+|.+-.-+.+ ++..-++.|+.++|.+-..-...+..-+..+++|.++.++..+..-
T Consensus       346 Ag~CL~l~A~---~~~D~Iv~~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~  421 (859)
T KOG1241|consen  346 AGVCLMLFAQ---CVGDDIVPHVLPFIEENIQN-PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW  421 (859)
T ss_pred             HHHHHHHHHH---HhcccchhhhHHHHHHhcCC-cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence            6667776663   22334443 34444446766 8899999999999999886667777777889999999999988888


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHH----HhcCchHHH
Q 010080          225 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL----VKSGVLQLL  300 (518)
Q Consensus       225 ~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~----~~~g~~~~L  300 (518)
                      +++.+.|+|..+|.+- |..+-......+.++.++.-|+ +.|.+..++||++.+|+++-.+....-    ......+.+
T Consensus       422 VkdTaAwtlgrI~d~l-~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i  499 (859)
T KOG1241|consen  422 VKDTAAWTLGRIADFL-PEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI  499 (859)
T ss_pred             hcchHHHHHHHHHhhc-hhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence            8899999999999763 2222222223455555555553 457899999999999995321111000    001233334


Q ss_pred             HHHHcc------CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHH---------HhccCh----hhhH
Q 010080          301 VERLAT------SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVK---------CLKSEH----RVLK  361 (518)
Q Consensus       301 v~lL~~------~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~---------lL~~~~----~~i~  361 (518)
                      +.-|..      .+....+..|..+|+.++...+...-.++       .++...+..         .+...+    ..++
T Consensus       500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v-------~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQ  572 (859)
T KOG1241|consen  500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMV-------QKLTLVILEKLDQTISSQILSLADRAQLNELQ  572 (859)
T ss_pred             HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHH-------HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence            433321      13456788999999999977654433222       133333333         333332    2677


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080          362 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  440 (518)
Q Consensus       362 ~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  440 (518)
                      ..-|-+|..+.+.....+..+.+. ++..+++++.+ .+.-+..+|..+++.++....   +      ...+|+  ..+.
T Consensus       573 s~Lc~~Lq~i~rk~~~~~~~~~d~-iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg---~------~F~kym--~~f~  640 (859)
T KOG1241|consen  573 SLLCNTLQSIIRKVGSDIREVSDQ-IMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG---K------GFAKYM--PAFK  640 (859)
T ss_pred             HHHHHHHHHHHHHccccchhHHHH-HHHHHHHHHcCCccccchHHHHHHHHHHHHHHh---H------hHHHHH--HHHH
Confidence            788888888876543344444443 77788999987 455688899999998877531   1      122232  2245


Q ss_pred             HHHHHhh-ccCCHHHHHHHHHHHHHHHccCCC
Q 010080          441 SGFIDLV-RSADIEAARLGLQFMELVLRGMPN  471 (518)
Q Consensus       441 ~~L~~lL-~~~d~~~~~~~l~~l~~il~~~~~  471 (518)
                      |.|..-| +..+..+...+...+..|.+..+.
T Consensus       641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~  672 (859)
T KOG1241|consen  641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALED  672 (859)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666 456778888888888888776543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.4e-08  Score=105.69  Aligned_cols=257  Identities=18%  Similarity=0.159  Sum_probs=200.2

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHh-cCChHHHHHhc---CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhh
Q 010080          126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIA-AGKQEETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF  201 (518)
Q Consensus       126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia-~~~~~~~~~v~---~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~  201 (518)
                      -+..|++=|+...++..|.+|+.-|+.+- -++.+... .+   ..||.|+.+|+...+.++.-+|++||.+++.-.|.-
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs-~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLS-GFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhc-cccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            34555556665545677888777776544 45554443 33   389999999998788999999999999999888888


Q ss_pred             HHHHHhcCChhHHHh-hhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080          202 RNVLLSQGALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  280 (518)
Q Consensus       202 r~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  280 (518)
                      ...+++.++||.|+. |+.-...++.++++-+|-.|++.. |+    .+..+|++-..+.+|.--...++..|+.+.+|+
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~----AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~  321 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PK----AILQAGALSAVLSYLDFFSIHAQRVALAIAANC  321 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cH----HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999996 555678999999999999999863 33    334689999999998877778899999999999


Q ss_pred             hcC-CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC---CcccceeeccCCCchhhhHHHHHHHhccC
Q 010080          281 SAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD---SSTISDVLVPGHGITDQVIAVLVKCLKSE  356 (518)
Q Consensus       281 ~~~-~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~---~~~~~~~i~~G~~~~~~~l~~L~~lL~~~  356 (518)
                      |.. .++....+.+  ++|.|..+|. +.+.+.+..++-++..++.+.   ++..+.+.      .++++.-..+|+.-.
T Consensus       322 Cksi~sd~f~~v~e--alPlL~~lLs-~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~------s~dLi~~~~qLlsvt  392 (1051)
T KOG0168|consen  322 CKSIRSDEFHFVME--ALPLLTPLLS-YQDKKPIESVCICLTRIADGFQHGPDKLDQLC------SHDLITNIQQLLSVT  392 (1051)
T ss_pred             HhcCCCccchHHHH--HHHHHHHHHh-hccchhHHHHHHHHHHHHHhcccChHHHHHHh------chhHHHHHHHHHhcC
Confidence            974 4455666654  5899999994 778888899999998888543   33344454      357999888888655


Q ss_pred             h----hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC
Q 010080          357 H----RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST  397 (518)
Q Consensus       357 ~----~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~  397 (518)
                      .    ..+.......++-++.+++-....+...++...|..+|..
T Consensus       393 ~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  393 PTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             cccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            3    2556677888999999988888888888999999998854

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=8.1e-07  Score=87.43  Aligned_cols=346  Identities=14%  Similarity=0.130  Sum_probs=227.2

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CC
Q 010080           89 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PA  167 (518)
Q Consensus        89 ~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~  167 (518)
                      +.+...+.+..+-.+.-|.+ ||..... ...+.+.|+|.+|+.++.... +++....+..+.|++.++.-..+.+- |.
T Consensus       311 KaLdr~n~~Ll~lv~~FLkK-LSIf~eN-K~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD~glr~KMv~~Gl  387 (791)
T KOG1222|consen  311 KALDRSNSSLLTLVIKFLKK-LSIFDEN-KIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFDSGLRPKMVNGGL  387 (791)
T ss_pred             HHHcccchHHHHHHHHHHHH-hhhhccc-hHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccccccccHHHhhccc
Confidence            35556666665555566666 6644322 256778999999999998766 45656688999999977654444444 79


Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      +|.+..+|.+.   .-..-|+..|..++.| ..++..+....+|+.++..+- ..+..+-.......-|||-++.   ..
T Consensus       388 lP~l~~ll~~d---~~~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR---Na  460 (791)
T KOG1222|consen  388 LPHLASLLDSD---TKHGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR---NA  460 (791)
T ss_pred             hHHHHHHhCCc---ccchhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc---cc
Confidence            99999999763   2334567788888884 477788888889999987554 4455555555555568886642   23


Q ss_pred             hHHHhhchHHHHHHH-hccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          247 ELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       247 ~~i~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                      .++....++..|+.. +++.|.-+    ...+.+++.........+++  .+..|...+...++......++.+++|+.-
T Consensus       461 QlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v  534 (791)
T KOG1222|consen  461 QLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKV  534 (791)
T ss_pred             eEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence            355556677777654 44555432    34556777654433444443  356677777666677778889999999976


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC--Chh
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--PFD  401 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~  401 (518)
                      .+-+..+. +.     +.+++|.+...|...  ...+.-+..-+++.++... .....+..+++++.|+++|+..  |.+
T Consensus       535 ~dldw~~i-lq-----~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~-~cA~Lla~a~~i~tlieLL~a~QeDDE  607 (791)
T KOG1222|consen  535 TDLDWAKI-LQ-----SENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL-DCARLLAPAKLIDTLIELLQACQEDDE  607 (791)
T ss_pred             CCCCHHHH-Hh-----hccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh-HHHHHhCccccHHHHHHHHHhhcccch
Confidence            55443332 32     347899999988764  2356666777777765432 3333345679999999999653  334


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc-hHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080          402 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC-LSGFIDLVRSADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       402 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~-i~~L~~lL~~~d~~~~~~~l~~l~~il~~  468 (518)
                      ......++...+..+           +.-.++|++... -..|++++..++.++.++|=.+|.-|..+
T Consensus       608 fV~QiiyVF~Q~l~H-----------e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~  664 (791)
T KOG1222|consen  608 FVVQIIYVFLQFLKH-----------ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH  664 (791)
T ss_pred             HHHHHHHHHHHHHHH-----------HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            555566666666553           122456665544 44599999999999888887777766554

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.95  E-value=3.1e-08  Score=97.80  Aligned_cols=232  Identities=17%  Similarity=0.194  Sum_probs=165.1

Q ss_pred             hHHHHHHHhc--cCChhHHHHHHHHHHHhhcCCchhhhHHHh------cCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          254 LLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVK------SGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       254 ~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~------~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                      ....++++|+  +++++++..++-.+..|...++...+.+..      ......++.++ .+++..+...++++++.+..
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence            3445555555  367899999999999999877777776655      22677888877 57788889999999999998


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhcc----ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh------
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLKS----EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL------  395 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~----~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL------  395 (518)
                      ..+.......       .++++.++.++.+    ++..++.-|+.+++++.. .++.+..+.+.|+++.|..+|      
T Consensus       135 ~~~~~~~~~~-------~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~  206 (312)
T PF03224_consen  135 QGPKRSEKLV-------KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATN  206 (312)
T ss_dssp             STTT--HHHH-------HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH-----
T ss_pred             cCCccccchH-------HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhccc
Confidence            7665433211       1466777766654    456788999999999975 568889999999999999999      


Q ss_pred             c-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhcc-CCHHHHHHHHHHHHHHHccCCCCc
Q 010080          396 S-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHE  473 (518)
Q Consensus       396 ~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~~~~~~l~~l~~il~~~~~~~  473 (518)
                      . .....++.+++.+++-++..           .+.+..+.+.++++.|++++.. ...+++++++.++.|++...+.. 
T Consensus       207 ~~~~~~Ql~Y~~ll~lWlLSF~-----------~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~-  274 (312)
T PF03224_consen  207 SNSSGIQLQYQALLCLWLLSFE-----------PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS-  274 (312)
T ss_dssp             ----HHHHHHHHHHHHHHHTTS-----------HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT-
T ss_pred             CCCCchhHHHHHHHHHHHHhcC-----------HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH-
Confidence            2 34578999999999999874           3667889999999999999986 56789999999999999765542 


Q ss_pred             chhHHHhhchHHHHHHHhcC--CCHHHHHHHHHHH
Q 010080          474 GTKLVEREDGIDAMERFQFH--ENEDLRNMANGLV  506 (518)
Q Consensus       474 ~~~~ie~~ggl~~l~~L~~~--~~~~i~~~a~~il  506 (518)
                      ....+-.+|++..++.|+..  .++|+++--..+-
T Consensus       275 ~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~  309 (312)
T PF03224_consen  275 NIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK  309 (312)
T ss_dssp             HHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            34556678999999999755  5888887554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PTZ00429 beta-adaptin; Provisional

Probab=98.90  E-value=4.3e-06  Score=90.57  Aligned_cols=357  Identities=17%  Similarity=0.097  Sum_probs=201.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChH
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP  169 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~  169 (518)
                      .+...++..+-.|+.++.++....  |  +.+.+.|.++.|.++|...+ +.++..|+.+|..|....+.......+.+.
T Consensus       148 ~L~D~~pYVRKtAalai~Kly~~~--p--elv~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~  222 (746)
T PTZ00429        148 AVADPDPYVRKTAAMGLGKLFHDD--M--QLFYQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDYGSEKIESSNEWVN  222 (746)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhhC--c--ccccccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence            445667777777777777755443  2  12445678888888876443 556677888888887554433333334566


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI  249 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i  249 (518)
                      .|+..|.. -++=.+-..+.+|....-.+..   .  ...++..+...+++.+..+.-.|+.++.++....++    +.+
T Consensus       223 ~Ll~~L~e-~~EW~Qi~IL~lL~~y~P~~~~---e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~----~~~  292 (746)
T PTZ00429        223 RLVYHLPE-CNEWGQLYILELLAAQRPSDKE---S--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ----ELI  292 (746)
T ss_pred             HHHHHhhc-CChHHHHHHHHHHHhcCCCCcH---H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH----HHH
Confidence            66666654 3444555555566543221111   1  123566777788888999999999999988743211    121


Q ss_pred             H--hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhH----H---------------------Hh----cCchH
Q 010080          250 K--VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL----L---------------------VK----SGVLQ  298 (518)
Q Consensus       250 ~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~----~---------------------~~----~g~~~  298 (518)
                      .  ....-+.++.++ +.+++++--++..+..|....+.....    +                     .+    ..++.
T Consensus       293 ~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~  371 (746)
T PTZ00429        293 ERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILK  371 (746)
T ss_pred             HHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHH
Confidence            1  112234455553 456677666666665554432211110    0                     00    01233


Q ss_pred             HHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHH
Q 010080          299 LLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH  378 (518)
Q Consensus       299 ~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~  378 (518)
                      .|.++. ...+.++...++++||.++..-+..    .       ...+..|+.++..... +..+++-++.+|....++.
T Consensus       372 EL~eYa-~d~D~ef~r~aIrAIg~lA~k~~~~----a-------~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~  438 (746)
T PTZ00429        372 ELAEYA-SGVDMVFVVEVVRAIASLAIKVDSV----A-------PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL  438 (746)
T ss_pred             HHHHHh-hcCCHHHHHHHHHHHHHHHHhChHH----H-------HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH
Confidence            344444 2456667778888888887543321    1       2466777777765433 4556777788886655442


Q ss_pred             HHHHHhCCCHHHHHHHh---cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHH
Q 010080          379 KQLIHSSEALALLLHLL---STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA  455 (518)
Q Consensus       379 ~~~li~~~~i~~Li~lL---~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~  455 (518)
                      .       +++.|+..+   .-.+++.+...+|.|+..+..-           +...     ..+..+++-+...++.++
T Consensus       439 ~-------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I-----------~~a~-----~~L~~~i~~f~~E~~~Vq  495 (746)
T PTZ00429        439 L-------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI-----------ENGK-----DIIQRFIDTIMEHEQRVQ  495 (746)
T ss_pred             H-------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH-----------hhHH-----HHHHHHHhhhccCCHHHH
Confidence            1       344555433   2356677778899999886421           1111     123333443344667888


Q ss_pred             HHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH-hcCCCHHHHHHHHH
Q 010080          456 RLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENEDLRNMANG  504 (518)
Q Consensus       456 ~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L-~~~~~~~i~~~a~~  504 (518)
                      ...|.+.-.++-..+.. ....+     ...|..+ ....|++|+++|..
T Consensus       496 lqlLta~vKlfl~~p~~-~~~~l-----~~vL~~~t~~~~d~DVRDRA~~  539 (746)
T PTZ00429        496 LAILSAAVKMFLRDPQG-MEPQL-----NRVLETVTTHSDDPDVRDRAFA  539 (746)
T ss_pred             HHHHHHHHHHHhcCcHH-HHHHH-----HHHHHHHHhcCCChhHHHHHHH
Confidence            88888888777554321 11111     1233344 35688899999964

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.81  E-value=5.9e-07  Score=87.40  Aligned_cols=222  Identities=18%  Similarity=0.166  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHhc--CChHHHHHhh-cCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC
Q 010080          144 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHL-GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP  220 (518)
Q Consensus       144 ~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL-~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~  220 (518)
                      .-|+.||..+..-. +.+.+.+  +++..++..+ ++..+-+++.+.+.|+.-+.. ++.....+...+.|+.|..++++
T Consensus       175 ~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~  252 (442)
T KOG2759|consen  175 QFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKE  252 (442)
T ss_pred             HHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHH
Confidence            44888888888654 4565655  5888888888 555678999999999999998 55666777888999999999996


Q ss_pred             C-ChhHHHHHHHHHHHhhcCCCCCchh----hHHHhhchHHHHHHHhc---cCChhHHHHHHHHHHHhhcC---------
Q 010080          221 N-KGSTVRTAAWALSNLIKGPDPKPAT----ELIKVDGLLDAILRHLK---RADEELTTEVAWVVVYLSAL---------  283 (518)
Q Consensus       221 ~-~~~~~~~a~~~L~nL~~~~~~~~~~----~~i~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~---------  283 (518)
                      . ...+.|.++.++.|++........+    ..+.. +-++..++.|.   ..|+++..+.-..-..|-..         
T Consensus       253 ~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDe  331 (442)
T KOG2759|consen  253 STKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDE  331 (442)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            5 7999999999999999643111111    11122 33444444444   45676666554433322211         


Q ss_pred             ------------Cc---------hhhhHHHh--cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCC
Q 010080          284 ------------SN---------VATSLLVK--SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG  340 (518)
Q Consensus       284 ------------~~---------~~~~~~~~--~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~  340 (518)
                                  +|         ++...+.+  -.+++.|+.+|..+.++.++.-||.=||..+...+.....+...   
T Consensus       332 Y~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~---  408 (442)
T KOG2759|consen  332 YKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY---  408 (442)
T ss_pred             HHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh---
Confidence                        11         11222222  24778999999877788999999999999999888877766654   


Q ss_pred             chhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080          341 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  374 (518)
Q Consensus       341 ~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~  374 (518)
                         |+=..++++++|+++.||.+|+.++.-|..+
T Consensus       409 ---ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  409 ---GGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             ---chHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence               6899999999999999999999998777543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.9e-07  Score=88.38  Aligned_cols=187  Identities=17%  Similarity=0.186  Sum_probs=152.8

Q ss_pred             CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhh
Q 010080          265 ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ  344 (518)
Q Consensus       265 ~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~  344 (518)
                      .+.+-+..++--|.+++. +-++...++..|++..++.++ .+++..++..|.++||..+..++.....+++.      |
T Consensus        95 ~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~------~  166 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYL-ENSDAELRELAARVIGTAVQNNPKSQEQVIEL------G  166 (342)
T ss_pred             CCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc------c
Confidence            345667788888888886 445667788899999999988 68899999999999999999998877778865      5


Q ss_pred             hHHHHHHHhccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CChhHHHHHHHHHHHhcCCCCCCC
Q 010080          345 VIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNLCVSPTEGE  421 (518)
Q Consensus       345 ~l~~L~~lL~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~eA~~aL~nl~~~~~~~~  421 (518)
                      +++.|+.++.+.++ .++..|.++++++...++.....+...+++..|..+|++  .+...+..|+..+..+....    
T Consensus       167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~----  242 (342)
T KOG2160|consen  167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED----  242 (342)
T ss_pred             cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh----
Confidence            99999999987655 788999999999999998888888888889999999988  67888999999999998742    


Q ss_pred             CCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          422 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       422 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                            ......+...|.-..+.++..+.+.++...++.++...+...
T Consensus       243 ------~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  243 ------KSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             ------hhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence                  122234445677777888888888888888888877776543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.78  E-value=1.7e-06  Score=86.79  Aligned_cols=255  Identities=18%  Similarity=0.225  Sum_probs=163.7

Q ss_pred             HHHHHHHHhcCC-hHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC---C
Q 010080          146 AAWCLTNIAAGK-QEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML---P  220 (518)
Q Consensus       146 A~~~L~nia~~~-~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~---~  220 (518)
                      |+.+++.+-.|. ..+...++ .++|.+...+.. +..-+++.++||+|.|+.   ...+.+-.+|.+++.++-..   .
T Consensus       386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D-~~l~vk~ttAwc~g~iad---~va~~i~p~~Hl~~~vsa~liGl~  461 (858)
T COG5215         386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD-SCLWVKSTTAWCFGAIAD---HVAMIISPCGHLVLEVSASLIGLM  461 (858)
T ss_pred             HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc-ceeehhhHHHHHHHHHHH---HHHHhcCccccccHHHHHHHhhhh
Confidence            555666665443 34455556 589999998876 678899999999999986   35566667788887775432   3


Q ss_pred             CChhHHHHHHHHHHHhhcCCCCCchhh---HHHhhchHHHHHHHhc------cCChhHHHHHHHHHHHhhcCCchhhhHH
Q 010080          221 NKGSTVRTAAWALSNLIKGPDPKPATE---LIKVDGLLDAILRHLK------RADEELTTEVAWVVVYLSALSNVATSLL  291 (518)
Q Consensus       221 ~~~~~~~~a~~~L~nL~~~~~~~~~~~---~i~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~L~~~~~~~~~~~  291 (518)
                      +.+.+..+++|+.-||..+- ++..++   .+  ..+.+.++.-|-      ..+...+.....+|..|....++....+
T Consensus       462 D~p~~~~ncsw~~~nlv~h~-a~a~~~~~S~l--~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~  538 (858)
T COG5215         462 DCPFRSINCSWRKENLVDHI-AKAVREVESFL--AKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDI  538 (858)
T ss_pred             ccchHHhhhHHHHHhHHHhh-hhhhccccchh--HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHH
Confidence            46788899999999998653 221111   11  233444443322      2344677888888887776544333322


Q ss_pred             HhcCchHHHHHHHcc----------CC----CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh
Q 010080          292 VKSGVLQLLVERLAT----------SN----SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH  357 (518)
Q Consensus       292 ~~~g~~~~Lv~lL~~----------~~----~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~  357 (518)
                      + .|+.......|..          ..    -.+++..-+.+|..+.......+..+-       ..++..++++|.+.+
T Consensus       539 ~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-------D~lm~Lf~r~les~~  610 (858)
T COG5215         539 L-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-------DQLMELFIRILESTK  610 (858)
T ss_pred             H-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-------HHHHHHHHHHHhccC
Confidence            1 2333322222210          00    123445556666666544433333332       358889999998875


Q ss_pred             h-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          358 R-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       358 ~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      + .+-.+...+||+++..-.++...-.. .++|.|...|...|..+..-|+..++.++..
T Consensus       611 ~t~~~~dV~~aIsal~~sl~e~Fe~y~~-~fiPyl~~aln~~d~~v~~~avglvgdlant  669 (858)
T COG5215         611 PTTAFGDVYTAISALSTSLEERFEQYAS-KFIPYLTRALNCTDRFVLNSAVGLVGDLANT  669 (858)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence            5 56678899999998765454444433 4899999999989999999999999998764

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=2.7e-07  Score=96.08  Aligned_cols=329  Identities=17%  Similarity=0.221  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhh
Q 010080           96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHL  175 (518)
Q Consensus        96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL  175 (518)
                      .+.+..|++..-.-...+..     +  +++.|-++.+....+ -++..-.-.-+.|.|.+.++.   .+++++.+++=.
T Consensus        27 ~~kr~~a~kkvIa~Mt~G~D-----v--SslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~---a~~avnt~~kD~   95 (734)
T KOG1061|consen   27 KEKRKDAVKKVIAYMTVGKD-----V--SSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDL---AILAVNTFLKDC   95 (734)
T ss_pred             hhhHHHHHHHHHhcCccCcc-----h--HhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchH---HHhhhhhhhccC
Confidence            35666666544333333311     1  678888999888766 334444677888999877643   345677777777


Q ss_pred             cCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchH
Q 010080          176 GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL  255 (518)
Q Consensus       176 ~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l  255 (518)
                      .+ +++.++.-|+..++.+-.+  ..     ..-+..||.+.+++.++.+++.++-+..++-.-+     .+.+...|++
T Consensus        96 ~d-~np~iR~lAlrtm~~l~v~--~i-----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-----~~~~~~~gl~  162 (734)
T KOG1061|consen   96 ED-PNPLIRALALRTMGCLRVD--KI-----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-----PDLVEDSGLV  162 (734)
T ss_pred             CC-CCHHHHHHHhhceeeEeeh--HH-----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-----hhhccccchh
Confidence            66 7899999999999877653  22     2235678999999999999999999999987542     2355578999


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc------------------------------
Q 010080          256 DAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA------------------------------  305 (518)
Q Consensus       256 ~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~------------------------------  305 (518)
                      +.|-.++.+.++.|..+|+.+|..|...+++.....+....+..++..+.                              
T Consensus       163 ~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~  242 (734)
T KOG1061|consen  163 DALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICE  242 (734)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHH
Confidence            99999999999999999999999999755421111111111222222221                              


Q ss_pred             ------cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHH
Q 010080          306 ------TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK  379 (518)
Q Consensus       306 ------~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~  379 (518)
                            .|.+..+...+..++-+.+...+.....+.       ..+-+.++.++.+.. .++.-|..-+.-+....++..
T Consensus       243 r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-------~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~  314 (734)
T KOG1061|consen  243 RLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-------KKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEIL  314 (734)
T ss_pred             HhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-------HHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHH
Confidence                  122233333333333333222111000000       011122222222222 223222222222222222211


Q ss_pred             ----------------------HH---HH-hCC---CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHH
Q 010080          380 ----------------------QL---IH-SSE---ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEH  430 (518)
Q Consensus       380 ----------------------~~---li-~~~---~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~  430 (518)
                                            +.   +. +++   +++-|...-..-|.+.-++|++||++++...           ++
T Consensus       315 ~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~-----------e~  383 (734)
T KOG1061|consen  315 KVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA-----------EQ  383 (734)
T ss_pred             HhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh-----------hh
Confidence                                  00   11 111   3334444445567888899999999997632           11


Q ss_pred             HHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCC
Q 010080          431 LVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNH  472 (518)
Q Consensus       431 ~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~  472 (518)
                           ..+|++.|++++.-+-..++..+...++.+++.+++.
T Consensus       384 -----~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~  420 (734)
T KOG1061|consen  384 -----SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK  420 (734)
T ss_pred             -----hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence                 1789999999999877778888888999999988863

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.76  E-value=4.3e-06  Score=81.57  Aligned_cols=312  Identities=15%  Similarity=0.105  Sum_probs=209.4

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHH------HHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH-hcC-
Q 010080           95 AMQKRVNALRELRRLLSRFEFPPIETA------LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA-LLP-  166 (518)
Q Consensus        95 ~~~~~~~a~~~lr~lls~~~~~~~~~~------i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~-v~~-  166 (518)
                      .++.....+.-+-.+|+..+... ..+      .+....+.++.+|..+++ -.+..+.|+++-++......... -.+ 
T Consensus        79 kdd~v~yvL~li~DmLs~d~sr~-~lf~~~a~~~k~~~~~~fl~ll~r~d~-~iv~~~~~Ils~la~~g~~~~~~~e~~~  156 (442)
T KOG2759|consen   79 KDDTVQYVLTLIDDMLSEDRSRV-DLFHDYAHKLKRTEWLSFLNLLNRQDT-FIVEMSFRILSKLACFGNCKMELSELDV  156 (442)
T ss_pred             hHHHHHHHHHHHHHHHhhCchHH-HHHHHHHHhhhccchHHHHHHHhcCCh-HHHHHHHHHHHHHHHhccccccchHHHH
Confidence            35566677788888888765321 111      123347778888876553 23233889999888433221111 111 


Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCc
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKP  244 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~  244 (518)
                      -...|...++++.+.+-...|+.||.-+.. -+++|..+....++..++..+.+.  +..++-..+.|++-|..+  |..
T Consensus       157 ~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn--~~~  233 (442)
T KOG2759|consen  157 YKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN--PHA  233 (442)
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC--HHH
Confidence            233455556665667788889999999988 679999999999999999988433  678889999999999865  333


Q ss_pred             hhhHHHhhchHHHHHHHhcc-CChhHHHHHHHHHHHhhcCCc------hhhhHHHhcCchHHHHHHHc-cCCCccchhhh
Q 010080          245 ATELIKVDGLLDAILRHLKR-ADEELTTEVAWVVVYLSALSN------VATSLLVKSGVLQLLVERLA-TSNSLQLLIPV  316 (518)
Q Consensus       245 ~~~~i~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~------~~~~~~~~~g~~~~Lv~lL~-~~~~~~v~~~a  316 (518)
                      . +.+...+.++.|..++.+ ..+.|..-++.++.|+.+..+      +.+..++..++.+.+-.+.. ...++++....
T Consensus       234 a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di  312 (442)
T KOG2759|consen  234 A-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDI  312 (442)
T ss_pred             H-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHH
Confidence            3 445566899999999985 456788899999999998553      44456666666555444332 12233332211


Q ss_pred             hhh---h----hhhhcCCCcccceeeccCCC---------------------chhhhHHHHHHHhccCh-hhhHHHHHHH
Q 010080          317 LRS---L----GNLVAGDSSTISDVLVPGHG---------------------ITDQVIAVLVKCLKSEH-RVLKKEAAWV  367 (518)
Q Consensus       317 l~~---L----~nl~~~~~~~~~~~i~~G~~---------------------~~~~~l~~L~~lL~~~~-~~i~~~a~~~  367 (518)
                      -..   |    ..+++.+.... . +..|..                     =+-.++..|+.+|..++ |.+.--||.=
T Consensus       313 ~~L~e~L~~svq~LsSFDeY~s-E-l~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~D  390 (442)
T KOG2759|consen  313 EFLTEKLKNSVQDLSSFDEYKS-E-LRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHD  390 (442)
T ss_pred             HHHHHHHHHHHHhhccHHHHHH-H-HHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhh
Confidence            111   1    11111111000 0 111110                     02367889999997654 8888899999


Q ss_pred             HHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          368 LSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       368 Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                      |+......|+-...+...|+=..++++|++.|++||.+|..|+--+.
T Consensus       391 Ige~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  391 IGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM  437 (442)
T ss_pred             HHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            99999999999988889999999999999999999999999987664

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.75  E-value=1.3e-07  Score=93.42  Aligned_cols=229  Identities=18%  Similarity=0.200  Sum_probs=155.6

Q ss_pred             ChHHHHHhhcCC-CCHHHHHHHHHHHHhhhCCChhhHHHHHh------cCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080          167 ALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLS------QGALPPLARMMLPNKGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       167 ~v~~Lv~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~------~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~  239 (518)
                      ....++.+|... ++.++....+-.+..+..+++...+.+..      .....++++++.+++..+...++..|..|...
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            355555665554 68999999999999999988877776665      23678899999999999999999999998866


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhc----cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHH------ccCCC
Q 010080          240 PDPKPATELIKVDGLLDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL------ATSNS  309 (518)
Q Consensus       240 ~~~~~~~~~i~~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL------~~~~~  309 (518)
                      ..... ...  ..+.++.+++.+.    +++.+++..++.+|..|.. .+.+...+.+.|+++.+..+|      ....+
T Consensus       136 ~~~~~-~~~--~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~  211 (312)
T PF03224_consen  136 GPKRS-EKL--VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSG  211 (312)
T ss_dssp             TTT---HHH--HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred             CCccc-cch--HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence            43322 211  1356677776665    4566788999999999996 667888888999999999998      33344


Q ss_pred             ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-ChhhhHHHHHHHHHHhccCCHH-HHHHHHhCCC
Q 010080          310 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVE-HKQLIHSSEA  387 (518)
Q Consensus       310 ~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-~~~~i~~~a~~~Lsnl~~~~~~-~~~~li~~~~  387 (518)
                      .+++-.++.|+.-++... .....+..      .++++.|..++.. .+.+|.+-+..++.|+....++ .+..++.+|+
T Consensus       212 ~Ql~Y~~ll~lWlLSF~~-~~~~~~~~------~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~  284 (312)
T PF03224_consen  212 IQLQYQALLCLWLLSFEP-EIAEELNK------KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL  284 (312)
T ss_dssp             HHHHHHHHHHHHHHTTSH-HHHHHHHT------TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H
T ss_pred             hhHHHHHHHHHHHHhcCH-HHHHHHhc------cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH
Confidence            556667888888776554 44444443      3599999999965 4679999999999999986544 6777888887


Q ss_pred             HHHHHHHhc--CCChhHHHHH
Q 010080          388 LALLLHLLS--TSPFDIKKEV  406 (518)
Q Consensus       388 i~~Li~lL~--~~~~~v~~eA  406 (518)
                      ++.+-.+..  -+|+++....
T Consensus       285 l~~l~~L~~rk~~Dedl~edl  305 (312)
T PF03224_consen  285 LKTLQNLSERKWSDEDLTEDL  305 (312)
T ss_dssp             HHHHHHHHSS--SSHHHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHH
Confidence            777666663  3677765543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=1e-06  Score=84.61  Aligned_cols=185  Identities=15%  Similarity=0.192  Sum_probs=149.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080           92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALP  169 (518)
Q Consensus        92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~  169 (518)
                      .+.+++.+..|+..|..++..-+|.  ..++..|+++.++.+|++.+ ..+...|+|+|+..+.+++..-..++  |+++
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnA--ndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~  169 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNA--NDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS  169 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhH--HhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence            5678999999999999987765554  56889999999999888654 45655599999999999998888888  6999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC--CChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATE  247 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~  247 (518)
                      .|+..|.+..+..++..|++|++.+....+.....+...++...|...+++  .+..+++.++..+++|.....  ...+
T Consensus       170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~--s~~d  247 (342)
T KOG2160|consen  170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK--SDED  247 (342)
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh--hhhh
Confidence            999999987778899999999999999999999999999999999999997  578889999999999997642  2233


Q ss_pred             HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080          248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS  281 (518)
Q Consensus       248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~  281 (518)
                      ++...++...+..+..+.+.++...+.-++..+.
T Consensus       248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            4444455566666666667677666665554444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=4.7e-06  Score=86.74  Aligned_cols=288  Identities=16%  Similarity=0.211  Sum_probs=214.1

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCC--
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPD--  241 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~--  241 (518)
                      ..|+.|+.-+.++.-.+-|..|+.+|-.++.   .+|..+...| +++|+..|+.+  ++++...+.-++.++.+..+  
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            3578888888776668889999999998876   7888887775 89999999865  89999999999999987653  


Q ss_pred             -----CCc--------hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc-hhhhHHHh-cCchHHHHHHHcc
Q 010080          242 -----PKP--------ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-VATSLLVK-SGVLQLLVERLAT  306 (518)
Q Consensus       242 -----~~~--------~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~~~~-~g~~~~Lv~lL~~  306 (518)
                           +..        .-.++...+.+..++..+...|-.|+..+.-.|+.+....+ +..+.++. .-++..|+.+|. 
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~-  176 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR-  176 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh-
Confidence                 110        11234456778888888888899999999999998886544 44455544 457889999994 


Q ss_pred             CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh----hhhHHHHHHHHHHhccCCHHHHHHH
Q 010080          307 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH----RVLKKEAAWVLSNIAAGSVEHKQLI  382 (518)
Q Consensus       307 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~----~~i~~~a~~~Lsnl~~~~~~~~~~l  382 (518)
                      +.-..++-.++-.|..++.++. .++.++..     .+++..|+.++..+.    --|...|+..+.||...+..+.+.+
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~-~IQKlVAF-----ENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F  250 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNS-SIQKLVAF-----ENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF  250 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCc-hHHHHHHH-----HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence            5566778889999999987764 44444432     478888999986542    2577889999999999888888888


Q ss_pred             HhCCCHHHHHHHhcC---CC-----h---hHH--HHHHHHHHHhcCCCCCCCCCchhHHHHHH-HHHhcCchHHHHHhhc
Q 010080          383 HSSEALALLLHLLST---SP-----F---DIK--KEVAYVLGNLCVSPTEGEGKPKLIQEHLV-SLVGRGCLSGFIDLVR  448 (518)
Q Consensus       383 i~~~~i~~Li~lL~~---~~-----~---~v~--~eA~~aL~nl~~~~~~~~~~~~~~~~~~~-~l~~~g~i~~L~~lL~  448 (518)
                      .+.+.+|.|..+|..   ++     .   +|.  ..|+.++.-++..     |++..+..+++ .|.+.+++..||.++-
T Consensus       251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-----~Nt~~~~~q~qk~l~ss~ll~~Lc~il~  325 (970)
T KOG0946|consen  251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-----GNTSSITHQNQKALVSSHLLDVLCTILM  325 (970)
T ss_pred             hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHcchHHHHHHHHc
Confidence            999999999988843   22     1   122  3566777777653     33434446664 5668899999999988


Q ss_pred             cCC--HHHHHHHHHHHHHHHccC
Q 010080          449 SAD--IEAARLGLQFMELVLRGM  469 (518)
Q Consensus       449 ~~d--~~~~~~~l~~l~~il~~~  469 (518)
                      +++  .++...++-.+..+.++.
T Consensus       326 ~~~vp~dIltesiitvAevVRgn  348 (970)
T KOG0946|consen  326 HPGVPADILTESIITVAEVVRGN  348 (970)
T ss_pred             CCCCcHhHHHHHHHHHHHHHHhc
Confidence            774  456777777777777754

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.71  E-value=9.5e-06  Score=83.88  Aligned_cols=376  Identities=14%  Similarity=0.109  Sum_probs=213.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCChHHHHHhc-CChH
Q 010080           92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGKQEETKALL-PALP  169 (518)
Q Consensus        92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~-~~~~eA~~~L~nia~~~~~~~~~v~-~~v~  169 (518)
                      .++.+.-+...+...-+..+.-...-+++-.+...+..++..++.++.. .+.+....++.|--.+   ..+... ..+.
T Consensus       726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~---r~kpylpqi~s  802 (1172)
T KOG0213|consen  726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG---RVKPYLPQICS  802 (1172)
T ss_pred             ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh---ccccchHHHHH
Confidence            3444444444444455544443333344444445555555555433222 1212222222222211   001111 2445


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH--HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC---CCCCc
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR--NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG---PDPKP  244 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r--~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~---~~~~~  244 (518)
                      ..+..|.+ ..+.++++|+-.++.|+.--..+.  ..+-..|.  .|..-|....++++-..+.++..++..   ..-.+
T Consensus       803 tiL~rLnn-ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~p  879 (1172)
T KOG0213|consen  803 TILWRLNN-KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP  879 (1172)
T ss_pred             HHHHHhcC-CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence            55667776 789999999999998874111111  11122222  244455566777776666555555432   11111


Q ss_pred             hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080          245 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       245 ~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~  324 (518)
                      .     ..+++|.|..+|.+....|+.++.-.++.|++..++++..---..++=.|+++|. +-+.+++..|..++|.|+
T Consensus       880 P-----i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk-ahkK~iRRaa~nTfG~Ia  953 (1172)
T KOG0213|consen  880 P-----IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK-AHKKEIRRAAVNTFGYIA  953 (1172)
T ss_pred             C-----hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHH
Confidence            1     3589999999999999999999999999999987776543322345556777774 445677788888887776


Q ss_pred             cCCCcc--c----------------------ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHH
Q 010080          325 AGDSST--I----------------------SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ  380 (518)
Q Consensus       325 ~~~~~~--~----------------------~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~  380 (518)
                      ..-..+  .                      ..+.+..  .-..++|.|++=...+...|+...+.+++.+...-.+...
T Consensus       954 kaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c--~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen  954 KAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETC--GPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred             HhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhc--CchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence            321110  0                      0111110  1234666666666667778888888888877643222222


Q ss_pred             HHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc-------cCCHH
Q 010080          381 LIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-------SADIE  453 (518)
Q Consensus       381 ~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-------~~d~~  453 (518)
                      .-+- -+.|.|.+.|.+.|...|.-|+-++.+++.++..                 -|+..+++.||+       ...|.
T Consensus      1032 dYiy-av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g-----------------~g~eda~iHLLN~iWpNIle~sPh 1093 (1172)
T KOG0213|consen 1032 DYIY-AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG-----------------TGCEDALIHLLNLIWPNILETSPH 1093 (1172)
T ss_pred             hHHH-HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC-----------------cCcHHHHHHHHHHhhhhhcCCChH
Confidence            2222 3789999999999999999999999999886431                 234555555554       24566


Q ss_pred             HHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080          454 AARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK  508 (518)
Q Consensus       454 ~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~  508 (518)
                      ++....++++.+-....    ...+     +..+.+=..|+...+++.-..+.+.
T Consensus      1094 viqa~~e~~eg~r~~Lg----~~~~-----~~Y~~QGLFHParkVR~~yw~vyn~ 1139 (1172)
T KOG0213|consen 1094 VIQAFDEAMEGLRVALG----PQAM-----LKYCLQGLFHPARKVRKRYWTVYNS 1139 (1172)
T ss_pred             HHHHHHHHHHHHHHHhc----hHHH-----HHHHHHhccCcHHHHHHHHHHHHHh
Confidence            77666666666543221    1111     2233334578888777766555554

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=7e-06  Score=84.73  Aligned_cols=147  Identities=12%  Similarity=0.150  Sum_probs=87.5

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHh--hhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCc
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGN--VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP  244 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~n--la~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~  244 (518)
                      .+|.|..++.+.....+...|+.++-.  ++...+..-..+  .-++..|--++.++++.+..-++.+++.+... +|. 
T Consensus       257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~kt-Hp~-  332 (877)
T KOG1059|consen  257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT-HPK-  332 (877)
T ss_pred             hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh-CHH-
Confidence            355555555554444555666655432  222111111111  11355666677788899999999999988843 232 


Q ss_pred             hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080          245 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       245 ~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~  324 (518)
                         .  +...-..++++|.+.|+.++..|+-.|.-+..  .+++..+     ++.|+..+........+...+.-+-.+|
T Consensus       333 ---~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iC  400 (877)
T KOG1059|consen  333 ---A--VQAHKDLILRCLDDKDESIRLRALDLLYGMVS--KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISIC  400 (877)
T ss_pred             ---H--HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence               2  24566788999999999999999999998885  3344433     4556555543334455555554444455


Q ss_pred             cCCCc
Q 010080          325 AGDSS  329 (518)
Q Consensus       325 ~~~~~  329 (518)
                      +.+..
T Consensus       401 S~snY  405 (877)
T KOG1059|consen  401 SQSNY  405 (877)
T ss_pred             hhhhh
Confidence            54443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=3.6e-05  Score=80.34  Aligned_cols=284  Identities=15%  Similarity=0.095  Sum_probs=209.5

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCCh--
Q 010080          124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGE--  199 (518)
Q Consensus       124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~--  199 (518)
                      +-.||.|+.-..+..-.+.++.|+..|-.+|.   ..+..|. .+++.|+..|.. ..++++...++-++.++....+  
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            44688888877765555667889999999984   4555555 589999999876 3578999999999999875331  


Q ss_pred             --------------hhHH-HHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhH-HHhhchHHHHHHHhc
Q 010080          200 --------------EFRN-VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL-IKVDGLLDAILRHLK  263 (518)
Q Consensus       200 --------------~~r~-~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~-i~~~~~l~~L~~lL~  263 (518)
                                    .+.+ .+...+.|..|+..+...+-.+++.++-.|+++.+...++ ..+. +....++..|+.+|.
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e-~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE-LQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH-HHHHHHHCchhHHHHHHHHh
Confidence                          1222 2445688999999999999999999999999998776433 3443 344568999999999


Q ss_pred             cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC---CccchhhhhhhhhhhhcCCCcccceeeccCCC
Q 010080          264 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG  340 (518)
Q Consensus       264 ~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~  340 (518)
                      +.-+-|+.++...|+.|+.+++...+.+.=.+++..|..++...+   ..-|...|+..|-|+...+....+.+.+    
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE----  252 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE----  252 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc----
Confidence            888899999999999999976655555555788999999886433   2246778999999999877655444443    


Q ss_pred             chhhhHHHHHHHhccC---h-----h---h--hHHHHHHHHHHhccC-C----HHHHH-HHHhCCCHHHHHHHhcCC--C
Q 010080          341 ITDQVIAVLVKCLKSE---H-----R---V--LKKEAAWVLSNIAAG-S----VEHKQ-LIHSSEALALLLHLLSTS--P  399 (518)
Q Consensus       341 ~~~~~l~~L~~lL~~~---~-----~---~--i~~~a~~~Lsnl~~~-~----~~~~~-~li~~~~i~~Li~lL~~~--~  399 (518)
                        .+.+|.|..+|...   +     +   .  =...+..++.-+... +    ..+.| .+...+++..|..++.++  .
T Consensus       253 --~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp  330 (970)
T KOG0946|consen  253 --GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP  330 (970)
T ss_pred             --cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence              36899999877431   2     1   1  124566777777652 2    23343 455678999999999775  5


Q ss_pred             hhHHHHHHHHHHHhcCCC
Q 010080          400 FDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       400 ~~v~~eA~~aL~nl~~~~  417 (518)
                      .+|+.++.-+++++..+.
T Consensus       331 ~dIltesiitvAevVRgn  348 (970)
T KOG0946|consen  331 ADILTESIITVAEVVRGN  348 (970)
T ss_pred             HhHHHHHHHHHHHHHHhc
Confidence            789999999999998753

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=8.1e-06  Score=84.81  Aligned_cols=276  Identities=17%  Similarity=0.195  Sum_probs=178.2

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH----------
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE----------  159 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~----------  159 (518)
                      ..+++|.+.+..|+.+|.++.+.. +.....-....+.+.-+..+++++ +++...|.....++|....+          
T Consensus       225 atq~~d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfaitl~amks~~-deValQaiEFWsticeEEiD~~~e~~e~~d  302 (859)
T KOG1241|consen  225 ATQSPDEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAITLAAMKSDN-DEVALQAIEFWSTICEEEIDLAIEYGEAVD  302 (859)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            346889999999999999988864 223333344556666666667554 55666676666666642211          


Q ss_pred             -----H-----HHHhcCChHHHHHhhcCC------CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCCh
Q 010080          160 -----E-----TKALLPALPLLIAHLGEK------SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG  223 (518)
Q Consensus       160 -----~-----~~~v~~~v~~Lv~lL~~~------~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~  223 (518)
                           .     +.++-+.+|.|+.+|...      ++......|.-||.-++.   -+++.++. .++|.+=.-+++++.
T Consensus       303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~---~~~D~Iv~-~Vl~Fiee~i~~pdw  378 (859)
T KOG1241|consen  303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ---CVGDDIVP-HVLPFIEENIQNPDW  378 (859)
T ss_pred             cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---Hhcccchh-hhHHHHHHhcCCcch
Confidence                 0     111114789999998762      123455555555555543   22233333 345555556668888


Q ss_pred             hHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchh-hhHHHhcCchHHHHH
Q 010080          224 STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA-TSLLVKSGVLQLLVE  302 (518)
Q Consensus       224 ~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~~~~Lv~  302 (518)
                      .-+..++.++..+-.++++.....+  +.+++|.+++++.++.--++..+.|+|+.+++.-++. .....-.+.++.++.
T Consensus       379 r~reaavmAFGSIl~gp~~~~Lt~i--V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~  456 (859)
T KOG1241|consen  379 RNREAAVMAFGSILEGPEPDKLTPI--VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE  456 (859)
T ss_pred             hhhhHHHHHHHhhhcCCchhhhhHH--HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence            9999999999999988654333333  4699999999999777778899999999999865433 233344567777888


Q ss_pred             HHccCCCccchhhhhhhhhhhhcCCC------cccceeeccCCCchhhhHHHHHHHhcc------ChhhhHHHHHHHHHH
Q 010080          303 RLATSNSLQLLIPVLRSLGNLVAGDS------STISDVLVPGHGITDQVIAVLVKCLKS------EHRVLKKEAAWVLSN  370 (518)
Q Consensus       303 lL~~~~~~~v~~~al~~L~nl~~~~~------~~~~~~i~~G~~~~~~~l~~L~~lL~~------~~~~i~~~a~~~Lsn  370 (518)
                      -|.  ..+.+...+||++-+++..-.      .+++.+       ..-+.+.+-.|+..      ...++|..|.-+|.-
T Consensus       457 gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~-------t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmE  527 (859)
T KOG1241|consen  457 GLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA-------TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALME  527 (859)
T ss_pred             Hhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc-------chhHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence            773  567888999999999984321      122211       11122233333322      245899999999999


Q ss_pred             hccCCHHHHHHH
Q 010080          371 IAAGSVEHKQLI  382 (518)
Q Consensus       371 l~~~~~~~~~~l  382 (518)
                      +...++..+..+
T Consensus       528 lIk~st~~vy~~  539 (859)
T KOG1241|consen  528 LIKNSTDDVYPM  539 (859)
T ss_pred             HHHcCcHHHHHH
Confidence            998877665544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.61  E-value=1.3e-05  Score=80.65  Aligned_cols=352  Identities=15%  Similarity=0.153  Sum_probs=204.8

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH---------
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE---------  160 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~---------  160 (518)
                      ..+++|.+.|..|..+|.|+.... +.......+.-+.....+++++.+ +++...|......|+....+.         
T Consensus       229 atq~~d~e~q~aafgCl~kim~Ly-Y~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~~~pe  306 (858)
T COG5215         229 ATQGNDEELQHAAFGCLNKIMMLY-YKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDKYLPE  306 (858)
T ss_pred             hccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence            346889999999999999987753 233333444455556667777655 444455555444444322111         


Q ss_pred             ---------HHHhcCChHHHHHhhcCC-CC-------------------------------------------HHHHHHH
Q 010080          161 ---------TKALLPALPLLIAHLGEK-SS-------------------------------------------SPVAEQC  187 (518)
Q Consensus       161 ---------~~~v~~~v~~Lv~lL~~~-~~-------------------------------------------~~v~~~a  187 (518)
                               +.++.+.+|.|+.+|... ++                                           ..=++.|
T Consensus       307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaa  386 (858)
T COG5215         307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAA  386 (858)
T ss_pred             CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHH
Confidence                     112225789999998651 11                                           1125666


Q ss_pred             HHHHHhhhCCC-hhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc---
Q 010080          188 AWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK---  263 (518)
Q Consensus       188 ~~~L~nla~d~-~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~---  263 (518)
                      +-++|.+.... ..++..+ ...++|.+..++..+..-+...++||+..++.+-     .+.+...+.++..++-..   
T Consensus       387 vmAfGSvm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v-----a~~i~p~~Hl~~~vsa~liGl  460 (858)
T COG5215         387 VMAFGSVMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV-----AMIISPCGHLVLEVSASLIGL  460 (858)
T ss_pred             HHHhhhhhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH-----HHhcCccccccHHHHHHHhhh
Confidence            66666665432 2333333 3456888888888777788999999999998652     122222344443333222   


Q ss_pred             cCChhHHHHHHHHHHHhhcCCchhhhH---HHhcCchHHHHHHHc-----cCCCccchhhhhhhhhhhhcCCCcccceee
Q 010080          264 RADEELTTEVAWVVVYLSALSNVATSL---LVKSGVLQLLVERLA-----TSNSLQLLIPVLRSLGNLVAGDSSTISDVL  335 (518)
Q Consensus       264 ~~d~~v~~~a~~~L~~L~~~~~~~~~~---~~~~g~~~~Lv~lL~-----~~~~~~v~~~al~~L~nl~~~~~~~~~~~i  335 (518)
                      .+.+.+..+++|...+++++-.+....   ++ ...-+.++.-|.     ..++...+..+..+||.+....++....++
T Consensus       461 ~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~  539 (858)
T COG5215         461 MDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL  539 (858)
T ss_pred             hccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH
Confidence            345678899999999999753322211   11 111222222221     134556778888899988876654433222


Q ss_pred             ccCCCchhhhHHHHHH-----------HhccCh----hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCCh
Q 010080          336 VPGHGITDQVIAVLVK-----------CLKSEH----RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF  400 (518)
Q Consensus       336 ~~G~~~~~~~l~~L~~-----------lL~~~~----~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~  400 (518)
                             .|+......           .+..++    ..++..-|.+|..|.+..+..+..+-+ .++..++++|++.++
T Consensus       540 -------a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~  611 (858)
T COG5215         540 -------AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKP  611 (858)
T ss_pred             -------HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCC
Confidence                   133333322           222222    245556666666665543322222222 256778888877654


Q ss_pred             h-HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          401 D-IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       401 ~-v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      . +-.++..+|++++...+          ++.. -.-..++|.|..-|+..|..+...+...+..|.+..
T Consensus       612 t~~~~dV~~aIsal~~sl~----------e~Fe-~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl  670 (858)
T COG5215         612 TTAFGDVYTAISALSTSLE----------ERFE-QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL  670 (858)
T ss_pred             chhhhHHHHHHHHHHHHHH----------HHHH-HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence            4 55678889999976421          1111 112457899999999999999988888888886544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=7.4e-05  Score=78.39  Aligned_cols=318  Identities=19%  Similarity=0.223  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHH-HHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHH----Hh--cC---
Q 010080           98 KRVNALRELRRLLSRFEFPPIETALKAGAIPV-LVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETK----AL--LP---  166 (518)
Q Consensus        98 ~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~-Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~----~v--~~---  166 (518)
                      ...+-+..+|.-+....+++.  .....+... .+++|..+..    |.=+.||--++++.- +.+-    +.  ++   
T Consensus        29 vI~kE~a~IRa~ire~~~d~~--~r~rniaKLlYi~MLGypah----FGqieclKLias~~f~dKRiGYLaamLlLdE~q  102 (866)
T KOG1062|consen   29 VIQKECAAIRASIREPTNDPR--KRHRNIAKLLYIHMLGYPAH----FGQIECLKLIASDNFLDKRIGYLAAMLLLDERQ  102 (866)
T ss_pred             HHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHhCCCcc----chhhHHHHHhcCCCchHHHHHHHHHHHHhccch
Confidence            445566777776666555544  222233332 2455554331    333345555665432 1111    11  11   


Q ss_pred             -Ch----HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          167 -AL----PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       167 -~v----~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                       .+    ..+.+=|.+ ++.-++..|+.+||||+. .+-+|+      ..|-+-+++++.++.+++.|+.|...+.+. .
T Consensus       103 dvllLltNslknDL~s-~nq~vVglAL~alg~i~s-~Emard------lapeVe~Ll~~~~~~irKKA~Lca~r~irK-~  173 (866)
T KOG1062|consen  103 DLLLLLTNSLKNDLNS-SNQYVVGLALCALGNICS-PEMARD------LAPEVERLLQHRDPYIRKKAALCAVRFIRK-V  173 (866)
T ss_pred             HHHHHHHHHHHhhccC-CCeeehHHHHHHhhccCC-HHHhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-C
Confidence             22    222333444 677889999999999996 333343      357778899999999999999999999864 2


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc--------------C
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT--------------S  307 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~--------------~  307 (518)
                      |.    .  ...+++...++|.+.+..|+....-.+..+|..+++......+  +++.+|..|.+              -
T Consensus       174 P~----l--~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi  245 (866)
T KOG1062|consen  174 PD----L--VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGI  245 (866)
T ss_pred             ch----H--HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCC
Confidence            32    2  3578888999999999999888888888888876666666654  66777776642              1


Q ss_pred             CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh---hhhHHHHHHHHHHhccCCHHHHHHHHh
Q 010080          308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSVEHKQLIHS  384 (518)
Q Consensus       308 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~---~~i~~~a~~~Lsnl~~~~~~~~~~li~  384 (518)
                      ++|-++..++|.|+-+-.++.+..+.+-        .++..+..--.+++   ..|-.|+..+|..|-..+ ..+-.   
T Consensus       246 ~dPFLQi~iLrlLriLGq~d~daSd~M~--------DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~-~Lrvl---  313 (866)
T KOG1062|consen  246 SDPFLQIRILRLLRILGQNDADASDLMN--------DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNS-GLRVL---  313 (866)
T ss_pred             CchHHHHHHHHHHHHhcCCCccHHHHHH--------HHHHHHHhcccccccchhHHHHHHHHHHHhccCCc-hHHHH---
Confidence            2444566778888877766654433221        12222222111111   255666666666553322 11111   


Q ss_pred             CCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHH
Q 010080          385 SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMEL  464 (518)
Q Consensus       385 ~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~  464 (518)
                        ++..|-..|.+.|..+|.-|+-.|.......      |.-++.|.         ..+++.|+++|+.+...+|+.++.
T Consensus       314 --ainiLgkFL~n~d~NirYvaLn~L~r~V~~d------~~avqrHr---------~tIleCL~DpD~SIkrralELs~~  376 (866)
T KOG1062|consen  314 --AINILGKFLLNRDNNIRYVALNMLLRVVQQD------PTAVQRHR---------STILECLKDPDVSIKRRALELSYA  376 (866)
T ss_pred             --HHHHHHHHhcCCccceeeeehhhHHhhhcCC------cHHHHHHH---------HHHHHHhcCCcHHHHHHHHHHHHH
Confidence              2345555566666666666666666555421      22222221         124555666666666666666666


Q ss_pred             HHc
Q 010080          465 VLR  467 (518)
Q Consensus       465 il~  467 (518)
                      |..
T Consensus       377 lvn  379 (866)
T KOG1062|consen  377 LVN  379 (866)
T ss_pred             Hhc
Confidence            653

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.52  E-value=1.9e-07  Score=61.83  Aligned_cols=41  Identities=34%  Similarity=0.521  Sum_probs=38.3

Q ss_pred             CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          375 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       375 ~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      ++++++.++++|++|.|+++|++.+.+++++|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46889999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=1.6e-05  Score=85.19  Aligned_cols=283  Identities=14%  Similarity=0.145  Sum_probs=197.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHh-cCChHHH
Q 010080           94 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKAL-LPALPLL  171 (518)
Q Consensus        94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v-~~~v~~L  171 (518)
                      +-.+.|+.|....-+.=+.+++||-+       +|..++.|=+   +.-.+.|+-.|..+-.-.+ ..--++ +|+.|+.
T Consensus       448 ~FFteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYV  517 (1387)
T KOG1517|consen  448 PFFTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYV  517 (1387)
T ss_pred             chHHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHH
Confidence            55678888888888877778888862       4555555532   1112346666666653322 222222 3899999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-C--ChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080          172 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-N--KGSTVRTAAWALSNLIKGPDPKPATEL  248 (518)
Q Consensus       172 v~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~--~~~~~~~a~~~L~nL~~~~~~~~~~~~  248 (518)
                      ++||++ +-.+++---+++-+.|-.-++.+...++..++-...++++.+ +  +++-+..++..|+.++++. +.. .+.
T Consensus       518 LKLLQS-~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf-~lG-Q~a  594 (1387)
T KOG1517|consen  518 LKLLQS-SARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF-KLG-QKA  594 (1387)
T ss_pred             HHHhcc-chHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc-chh-HHH
Confidence            999998 788999999999998866567888888887777788888876 3  4577889999999999874 232 233


Q ss_pred             HHhhchHHHHHHHhccC-ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC-
Q 010080          249 IKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG-  326 (518)
Q Consensus       249 i~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~-  326 (518)
                      ....+.+...+..|+++ .+=++..+|-||+.|-.+.++..=.=...++..+|..+| ..+.++|+..|+.+||.+..+ 
T Consensus       595 cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L-sD~vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  595 CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL-SDPVPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh-cCccHHHHHHHHHHHHHHhccc
Confidence            34577888888888875 566788999999999875554433334567889999988 478999999999999999875 


Q ss_pred             ---CCccccee---eccCC--CchhhhHH----HHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHH
Q 010080          327 ---DSSTISDV---LVPGH--GITDQVIA----VLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL  390 (518)
Q Consensus       327 ---~~~~~~~~---i~~G~--~~~~~~l~----~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~  390 (518)
                         .++++..+   ++...  ..-...+.    .++.+++...+-++++..-+++.+..|...+...+......|.
T Consensus       674 ~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~  749 (1387)
T KOG1517|consen  674 SDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPE  749 (1387)
T ss_pred             ccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccc
Confidence               34444322   11000  00012222    5677778889999999999999999988777666554444443

>TIGR02270 conserved hypothetical protein

Probab=98.42  E-value=6.3e-05  Score=76.28  Aligned_cols=241  Identities=18%  Similarity=0.098  Sum_probs=138.7

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHH
Q 010080          126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL  205 (518)
Q Consensus       126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~  205 (518)
                      +++.|+..|..+........+++++.  ....+.       ++..|+..|.+ .++.++..++.+|+.+-.         
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~~-------~~~~L~~~L~d-~~~~vr~aaa~ALg~i~~---------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL--AQEDAL-------DLRSVLAVLQA-GPEGLCAGIQAALGWLGG---------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh--ccCChH-------HHHHHHHHhcC-CCHHHHHHHHHHHhcCCc---------
Confidence            46667777754443444344444442  211111       25667777766 566788888888876543         


Q ss_pred             HhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc
Q 010080          206 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN  285 (518)
Q Consensus       206 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~  285 (518)
                        ....+.|+.++.+.++.++..++-++...-              ....+.+..+|+++|+.++..++.+|.++...  
T Consensus       116 --~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       116 --RQAEPWLEPLLAASEPPGRAIGLAALGAHR--------------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             --hHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence              124566777777777777776665554411              12234566777777778888888888777641  


Q ss_pred             hhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHH
Q 010080          286 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA  365 (518)
Q Consensus       286 ~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~  365 (518)
                               ..++.|...+ .+.++.|+..|+..++.+-  ++               ..+..+..+...........+.
T Consensus       178 ---------~a~~~L~~al-~d~~~~VR~aA~~al~~lG--~~---------------~A~~~l~~~~~~~g~~~~~~l~  230 (410)
T TIGR02270       178 ---------LSESTLRLYL-RDSDPEVRFAALEAGLLAG--SR---------------LAWGVCRRFQVLEGGPHRQRLL  230 (410)
T ss_pred             ---------cchHHHHHHH-cCCCHHHHHHHHHHHHHcC--CH---------------hHHHHHHHHHhccCccHHHHHH
Confidence                     3345555555 4677777777777776552  11               2445555544433333333333


Q ss_pred             HHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHH
Q 010080          366 WVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFID  445 (518)
Q Consensus       366 ~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~  445 (518)
                      -++...  +.+         ..++.|..+++...  ++..++++++.+-        .|             ..++.|+.
T Consensus       231 ~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg--------~p-------------~av~~L~~  276 (410)
T TIGR02270       231 VLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG--------DV-------------EAAPWCLE  276 (410)
T ss_pred             HHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC--------Cc-------------chHHHHHH
Confidence            333332  222         25666777776644  7777777777662        22             24666666


Q ss_pred             hhccCCHHHHHHHHHHHHHHH
Q 010080          446 LVRSADIEAARLGLQFMELVL  466 (518)
Q Consensus       446 lL~~~d~~~~~~~l~~l~~il  466 (518)
                      .+.  |+.+...+-+++..|.
T Consensus       277 ~l~--d~~~aR~A~eA~~~It  295 (410)
T TIGR02270       277 AMR--EPPWARLAGEAFSLIT  295 (410)
T ss_pred             Hhc--CcHHHHHHHHHHHHhh
Confidence            664  3336777777777774

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=8.6e-05  Score=69.76  Aligned_cols=289  Identities=22%  Similarity=0.170  Sum_probs=176.3

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc----CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH
Q 010080          129 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL----PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV  204 (518)
Q Consensus       129 ~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~----~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~  204 (518)
                      -++.||.+.++ .++..|...+.++.++   ..+.+.    -.++.+.+++.. ..+  .++|+.+|.|++. .+..|+.
T Consensus         7 elv~ll~~~sP-~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq-~~~l~~~   78 (353)
T KOG2973|consen    7 ELVELLHSLSP-PVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQ-KEELRKK   78 (353)
T ss_pred             HHHHHhccCCh-HHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHh-hHHHHHH
Confidence            46788887664 4656677777777765   233333    268888898876 333  7899999999999 5688888


Q ss_pred             HHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH------hhchHHHHHHHhccCCh--hHHHHHHHH
Q 010080          205 LLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK------VDGLLDAILRHLKRADE--ELTTEVAWV  276 (518)
Q Consensus       205 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~------~~~~l~~L~~lL~~~d~--~v~~~a~~~  276 (518)
                      +++. .+..++..+.++...+.+..+..|+||++..+  +...+..      ..+.+.....+..++..  .-....+..
T Consensus        79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~--~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD--EVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCch--HHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            8887 77777788888888899999999999997643  2222111      12233333333333222  224455666


Q ss_pred             HHHhhcCCchhhhHHHhcCchH--HHHHHHccCCCccch-hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHh
Q 010080          277 VVYLSALSNVATSLLVKSGVLQ--LLVERLATSNSLQLL-IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL  353 (518)
Q Consensus       277 L~~L~~~~~~~~~~~~~~g~~~--~Lv~lL~~~~~~~v~-~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL  353 (518)
                      +++|+. .......+.+...++  ++.. + ++.+..++ .-...+|.|++.....+...+ +.    ...++|.|+.=+
T Consensus       156 f~nls~-~~~gR~l~~~~k~~p~~kll~-f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL-~e----~~~lLp~iLlPl  227 (353)
T KOG2973|consen  156 FANLSQ-FEAGRKLLLEPKRFPDQKLLP-F-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLL-DE----SINLLPAILLPL  227 (353)
T ss_pred             HHHHhh-hhhhhhHhcchhhhhHhhhhc-c-cccchhhhccchHHHHHhhhccchhHHHHh-cc----hHHHHHHHHhhc
Confidence            777776 334455555544332  2222 2 23344444 356677888776654333222 11    123444443322


Q ss_pred             ccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc-----CCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 010080          354 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-----TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ  428 (518)
Q Consensus       354 ~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~-----~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~  428 (518)
                      ..++ .              -+.+.+     . .+|.=+++|.     .+++++++.-+.+|.-+|...           
T Consensus       228 agpe-e--------------~sEEdm-----~-~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-----------  275 (353)
T KOG2973|consen  228 AGPE-E--------------LSEEDM-----A-KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-----------  275 (353)
T ss_pred             CCcc-c--------------cCHHHH-----h-cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-----------
Confidence            2221 1              011211     1 2344347774     368899999999999998731           


Q ss_pred             HHHHHHHhcCchHHHHHhhcc-CCHHHHHHHHHHHHHHHcc
Q 010080          429 EHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       429 ~~~~~l~~~g~i~~L~~lL~~-~d~~~~~~~l~~l~~il~~  468 (518)
                      .-.+++.+.|+.+.+-.+=.+ .|+++...+...+..+.+.
T Consensus       276 ~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~  316 (353)
T KOG2973|consen  276 AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRL  316 (353)
T ss_pred             HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence            224778889988887776554 6788888888877777654

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.37  E-value=5.8e-05  Score=74.44  Aligned_cols=271  Identities=18%  Similarity=0.124  Sum_probs=179.1

Q ss_pred             HHHcCCHHHHHHHhcCCCChH-HHHHHHHHHHHHhcCChHHHHHhcC-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC
Q 010080          121 ALKAGAIPVLVQCLAFGSPDE-QLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG  198 (518)
Q Consensus       121 ~i~~g~ip~Lv~~L~~~~~~~-~~~eA~~~L~nia~~~~~~~~~v~~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~  198 (518)
                      +-..|.+..|++++..++... +..+|+..|..+...  ++++.++. ++..++.+-.....++.+...+.+|+|+-.++
T Consensus       176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS  253 (832)
T KOG3678|consen  176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS  253 (832)
T ss_pred             hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence            445789999999999876544 346899999988753  45666662 34455554444457899999999999999999


Q ss_pred             hhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHH
Q 010080          199 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV  278 (518)
Q Consensus       199 ~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~  278 (518)
                      .+....++..|++..++--....++.++++++.+|.|++-.......+.++ +..+-+-|..+-.+.|+-++..+|.+.+
T Consensus       254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmv-eKr~~EWLF~LA~skDel~R~~AClAV~  332 (832)
T KOG3678|consen  254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMV-EKRAAEWLFPLAFSKDELLRLHACLAVA  332 (832)
T ss_pred             HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHH-HhhhhhhhhhhhcchHHHHHHHHHHHHh
Confidence            999999999999999998888889999999999999988653323334444 5677777888877888888999999999


Q ss_pred             HhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh
Q 010080          279 YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR  358 (518)
Q Consensus       279 ~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~  358 (518)
                      -|+.+. +.-..+..+|.+..+-.++. +-++.-          ++....+..+     |  ....-+..|+.+|.+...
T Consensus       333 vlat~K-E~E~~VrkS~TlaLVEPlva-~~DP~~----------FARD~hd~aQ-----G--~~~d~LqRLvPlLdS~R~  393 (832)
T KOG3678|consen  333 VLATNK-EVEREVRKSGTLALVEPLVA-SLDPGR----------FARDAHDYAQ-----G--RGPDDLQRLVPLLDSNRL  393 (832)
T ss_pred             hhhhhh-hhhHHHhhccchhhhhhhhh-ccCcch----------hhhhhhhhhc-----c--CChHHHHHhhhhhhcchh
Confidence            999743 34445555665443333332 222211          1111000000     0  123567888889987655


Q ss_pred             hhHHHHHHHHHHhccCCHH--HHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010080          359 VLKKEAAWVLSNIAAGSVE--HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL  413 (518)
Q Consensus       359 ~i~~~a~~~Lsnl~~~~~~--~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl  413 (518)
                      ..+--+++-+.-=++-...  ..+.+-+-|.|..|-++.++.+.---+-|..+|.-+
T Consensus       394 EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  394 EAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            5454444433322222111  123344668999999999887754444455555444

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.35  E-value=7.1e-07  Score=59.04  Aligned_cols=41  Identities=29%  Similarity=0.590  Sum_probs=38.5

Q ss_pred             ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080          198 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK  238 (518)
Q Consensus       198 ~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  238 (518)
                      +++.++.+++.|++|+|+.+|.+++..+++.++|+|+|||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46889999999999999999999999999999999999984

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=0.0017  Score=68.58  Aligned_cols=250  Identities=16%  Similarity=0.181  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC
Q 010080          143 LLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK  222 (518)
Q Consensus       143 ~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~  222 (518)
                      +--|+.+|++|++.  +-   +-+..|-.-.+|++ .++-|+..|+-|...+....|+.-..     .+++-.++|.+.+
T Consensus       124 VglAL~alg~i~s~--Em---ardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~  192 (866)
T KOG1062|consen  124 VGLALCALGNICSP--EM---ARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKH  192 (866)
T ss_pred             hHHHHHHhhccCCH--HH---hHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcC
Confidence            34588888888852  22   22456777777777 78999999999999998877665433     3344445555444


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc---------------cCChhHHHHHHHHHHHhhcCCchh
Q 010080          223 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK---------------RADEELTTEVAWVVVYLSALSNVA  287 (518)
Q Consensus       223 ~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~---------------~~d~~v~~~a~~~L~~L~~~~~~~  287 (518)
                      ..+.-..+-.+..+|... +. .....  ...+|.|+..|+               -.||=++..++..|.-|..++.+.
T Consensus       193 hGVL~~~l~l~~e~c~~~-~~-~l~~f--r~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~da  268 (866)
T KOG1062|consen  193 HGVLIAGLHLITELCKIS-PD-ALSYF--RDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADA  268 (866)
T ss_pred             CceeeeHHHHHHHHHhcC-HH-HHHHH--HHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccH
Confidence            555544444455555321 11 01111  123333333332               123445555555555555544333


Q ss_pred             hhHHHh--------------------cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCC----Cchh
Q 010080          288 TSLLVK--------------------SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH----GITD  343 (518)
Q Consensus       288 ~~~~~~--------------------~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~----~~~~  343 (518)
                      .+.|.+                    ...+..+..+   .++...+..|..+||.+..+.+..+..+--.+=    ..+.
T Consensus       269 Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I---~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~  345 (866)
T KOG1062|consen  269 SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI---RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDP  345 (866)
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCc
Confidence            332211                    1112222221   345667888888889888888777765431100    0011


Q ss_pred             hh----HHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080          344 QV----IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       344 ~~----l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  417 (518)
                      .+    =..++.+|.+++..||+.|.-.+--|+..+  ++..+     +..|+..|.+.+.+.+...+.-++.++...
T Consensus       346 ~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkf  416 (866)
T KOG1062|consen  346 TAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKF  416 (866)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence            11    124677888889999999998887776543  44443     456888888889999999999888887753

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=2.2e-06  Score=85.51  Aligned_cols=307  Identities=12%  Similarity=0.097  Sum_probs=200.5

Q ss_pred             HHHHHHHHHHhcC--ChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC
Q 010080          144 LEAAWCLTNIAAG--KQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML  219 (518)
Q Consensus       144 ~eA~~~L~nia~~--~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~  219 (518)
                      .-++|++.-.+-.  -.-.+..+.  +.+..|+++|+. ++..+.-.+...++|........+..++..|+|..|++++.
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~  483 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM  483 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence            3467776655532  122233333  478999999987 67778888889999998888899999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCch---hhhHHHhc--
Q 010080          220 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV---ATSLLVKS--  294 (518)
Q Consensus       220 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~---~~~~~~~~--  294 (518)
                      +.+..++.+..|.+..+..+......++.+. .-+...++.+.++++-.++..++-.|.|++.+...   ..+..+..  
T Consensus       484 sKDdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p  562 (743)
T COG5369         484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATP  562 (743)
T ss_pred             cchhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecCh
Confidence            8899999999999999998865555555553 56778888998888889999999999999974322   12222221  


Q ss_pred             --CchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC---------h--hhhH
Q 010080          295 --GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE---------H--RVLK  361 (518)
Q Consensus       295 --g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~---------~--~~i~  361 (518)
                        -..+.|++.+ ...++-...+.|..|-+++..++...+.++.     +...+..+..+|...         +  ..+-
T Consensus       563 ~~ylfk~l~~k~-e~~np~~i~~~~yilv~~aa~d~~l~~~V~~-----q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~  636 (743)
T COG5369         563 RRYLFKRLIDKY-EENNPMEILEGCYILVRNAACDDTLDYIVQS-----QEDMLDSIFEILDEFAGRTPLSPGSKEEHVL  636 (743)
T ss_pred             HHHHHHHHHHHH-HhcCchhhhhhHHHHHHHHhccchHHHHHHh-----HHHHHHHHHHHHHHHcccCCCCCCCCccccc
Confidence              1345566666 3566666778899999999988776666654     445666665555211         0  0111


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHhCCCH--HHHHHHhcC----CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 010080          362 KEAAWVLSNIAAGSVEHKQLIHSSEAL--ALLLHLLST----SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV  435 (518)
Q Consensus       362 ~~a~~~Lsnl~~~~~~~~~~li~~~~i--~~Li~lL~~----~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~  435 (518)
                      ..-..+.-|+.......     +.+..  |++= .++.    .+.+.--+..|.+.|+.+....+.-+ +...+.++.|+
T Consensus       637 ~p~s~~~v~l~e~~d~f-----~r~~~~~p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt-ratveR~~iL~  709 (743)
T COG5369         637 LPISYTIVNLSENSDKF-----KRLVLTTPHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT-RATVERIQILC  709 (743)
T ss_pred             Cccceeeeccccccccc-----ccceecCCCcc-ccccccCCCchhhhhccceEEEecccCccCCccc-hhhHHHHHHHH
Confidence            11112222222111010     11111  2222 2221    23346677889999976642211111 11137788888


Q ss_pred             hcCchHHHHHhhccCCHHHHHHHHHHHHHH
Q 010080          436 GRGCLSGFIDLVRSADIEAARLGLQFMELV  465 (518)
Q Consensus       436 ~~g~i~~L~~lL~~~d~~~~~~~l~~l~~i  465 (518)
                      ..|.-.-+..+.....+.+...+-.+|+++
T Consensus       710 ~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         710 ANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            888888787777777778888888888776

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.25  E-value=3.7e-05  Score=75.72  Aligned_cols=237  Identities=16%  Similarity=0.183  Sum_probs=162.4

Q ss_pred             HHhhchHHHHHHHhccCCh--hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080          249 IKVDGLLDAILRHLKRADE--ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  326 (518)
Q Consensus       249 i~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  326 (518)
                      +...|++..|++++..++-  .++..+...|-.+..  .++.+.+...| +..++.+-.....++....++.+|+++..+
T Consensus       176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH  252 (832)
T KOG3678|consen  176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH  252 (832)
T ss_pred             hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence            3456899999999998775  468899999988875  34566666655 444444433334556667889999999999


Q ss_pred             CCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080          327 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKE  405 (518)
Q Consensus       327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e  405 (518)
                      .++..+.++.+      |++..++-.....+|.+.+.++.+|+|++-+ +.+....+++..+-..|.-+..+.|.-+|..
T Consensus       253 Seet~~~Lvaa------~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~  326 (832)
T KOG3678|consen  253 SEETCQRLVAA------GGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLH  326 (832)
T ss_pred             hHHHHHHHHhh------cccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHH
Confidence            88888888875      4888888888888899999999999999864 4455566888888888888888888889999


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc-------------------------------hHHHHHhhccCCHHH
Q 010080          406 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC-------------------------------LSGFIDLVRSADIEA  454 (518)
Q Consensus       406 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~-------------------------------i~~L~~lL~~~d~~~  454 (518)
                      ||.+++-++.+.+           .-..+...|.                               +.-|+-+|++.-.+.
T Consensus       327 AClAV~vlat~KE-----------~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EA  395 (832)
T KOG3678|consen  327 ACLAVAVLATNKE-----------VEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEA  395 (832)
T ss_pred             HHHHHhhhhhhhh-----------hhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhh
Confidence            9999999987532           1111122222                               333333443322222


Q ss_pred             HHHHHHHHHHHHccCCC--CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080          455 ARLGLQFMELVLRGMPN--HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD  507 (518)
Q Consensus       455 ~~~~l~~l~~il~~~~~--~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~  507 (518)
                        .++.+++.-++..-.  ......+.+.|+++.|.++..++|.--.+.|.+.+.
T Consensus       396 --q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt  448 (832)
T KOG3678|consen  396 --QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT  448 (832)
T ss_pred             --hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence              222223222221100  012467889999999999999888877777766664

>TIGR02270 conserved hypothetical protein

Probab=98.24  E-value=0.00019  Score=72.85  Aligned_cols=209  Identities=16%  Similarity=0.073  Sum_probs=149.5

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH
Q 010080          127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL  206 (518)
Q Consensus       127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~  206 (518)
                      +..|+..|...+ +.+..+++.+|..+-..         .+.+.|+.+|.+ .++.++..++.+++..-.          
T Consensus        88 ~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~---------~a~~~L~~~L~~-~~p~vR~aal~al~~r~~----------  146 (410)
T TIGR02270        88 LRSVLAVLQAGP-EGLCAGIQAALGWLGGR---------QAEPWLEPLLAA-SEPPGRAIGLAALGAHRH----------  146 (410)
T ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHhcCCch---------HHHHHHHHHhcC-CChHHHHHHHHHHHhhcc----------
Confidence            788888887543 44666788887754432         247788899977 789999999988887332          


Q ss_pred             hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCch
Q 010080          207 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV  286 (518)
Q Consensus       207 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~  286 (518)
                        ...+++..+|++++..++..++.+|..+...             ..+|.|...+.+.+++|+..+.+++..+..  + 
T Consensus       147 --~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~-  208 (410)
T TIGR02270       147 --DPGPALEAALTHEDALVRAAALRALGELPRR-------------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R-  208 (410)
T ss_pred             --ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H-
Confidence              2356888999999999999999999988632             455667788999999999999999977753  2 


Q ss_pred             hhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHH
Q 010080          287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW  366 (518)
Q Consensus       287 ~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~  366 (518)
                              +.+..+..+.. .........+..+++..  ++               ..+++.|..++..+.  ++..+++
T Consensus       209 --------~A~~~l~~~~~-~~g~~~~~~l~~~lal~--~~---------------~~a~~~L~~ll~d~~--vr~~a~~  260 (410)
T TIGR02270       209 --------LAWGVCRRFQV-LEGGPHRQRLLVLLAVA--GG---------------PDAQAWLRELLQAAA--TRREALR  260 (410)
T ss_pred             --------hHHHHHHHHHh-ccCccHHHHHHHHHHhC--Cc---------------hhHHHHHHHHhcChh--hHHHHHH
Confidence                    22344444332 33333333333344332  22               247888999988754  8999999


Q ss_pred             HHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          367 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       367 ~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      +++.+-..           ..++.|+..+....  ++..|.+++..|+-
T Consensus       261 AlG~lg~p-----------~av~~L~~~l~d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       261 AVGLVGDV-----------EAAPWCLEAMREPP--WARLAGEAFSLITG  296 (410)
T ss_pred             HHHHcCCc-----------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence            99977432           27888888887654  99999999999864

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.19  E-value=0.00012  Score=74.50  Aligned_cols=305  Identities=12%  Similarity=0.053  Sum_probs=182.8

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhC---CChhhHHHHHhcCChhHHHhhhCCCChhHHHH---HHHHHHHhhcCC
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAG---EGEEFRNVLLSQGALPPLARMMLPNKGSTVRT---AAWALSNLIKGP  240 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~---d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~---a~~~L~nL~~~~  240 (518)
                      .|...+.+|.+ ..+.++++|+-..+.|+.   .+.+. ..+...|.  .|..-|....++++-.   |+.++.+..+..
T Consensus       605 ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         605 IVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGET-KELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence            45667778877 678999999998887763   11111 11122222  1333344556666554   444444544443


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhh
Q 010080          241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL  320 (518)
Q Consensus       241 ~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L  320 (518)
                      .-+|.     ..+++|.|..+|.+....+..+....++.++...++++..---..++=.|++.|. +-+.+++..|-.++
T Consensus       681 ~mqpP-----i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk-s~nKeiRR~A~~tf  754 (975)
T COG5181         681 SMQPP-----ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK-SWNKEIRRNATETF  754 (975)
T ss_pred             ccCCc-----hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HhhHHHHHhhhhhh
Confidence            32332     3599999999999999999999999999999888776543222345556777774 56677888887777


Q ss_pred             hhhhcCCCcc--cc----------------------eeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080          321 GNLVAGDSST--IS----------------------DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV  376 (518)
Q Consensus       321 ~nl~~~~~~~--~~----------------------~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~  376 (518)
                      |.|+..-..|  ..                      .+.+..  ..-.++|.|+.=...+...++.....+++.+...-.
T Consensus       755 G~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c--gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig  832 (975)
T COG5181         755 GCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC--GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG  832 (975)
T ss_pred             hhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc--CchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence            7776422111  00                      011100  022455665555556666777777776666643221


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc----cCCH
Q 010080          377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR----SADI  452 (518)
Q Consensus       377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~----~~d~  452 (518)
                      ++...-+ +.+.|.|.+.|.+.|+..|.-|.-+|.+++.++... |.       ...      .-.|+++|-    .+.|
T Consensus       833 ~~s~dYv-y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-g~-------eda------~IHLlNllwpNIle~sP  897 (975)
T COG5181         833 QASLDYV-YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-GD-------EDA------AIHLLNLLWPNILEPSP  897 (975)
T ss_pred             HHHHHHH-HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-cc-------HHH------HHHHHHHhhhhccCCCc
Confidence            1111111 237899999999999999999999999999876422 21       111      122334332    3567


Q ss_pred             HHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080          453 EAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD  507 (518)
Q Consensus       453 ~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~  507 (518)
                      .++....++++.+......+    .+     ...+.+=..|++..+++.-....+
T Consensus       898 hvi~~~~Eg~e~~~~~lg~g----~~-----m~Yv~qGLFHPs~~VRk~ywtvyn  943 (975)
T COG5181         898 HVIQSFDEGMESFATVLGSG----AM-----MKYVQQGLFHPSSTVRKRYWTVYN  943 (975)
T ss_pred             HHHHHHHHHHHHHHHHhccH----HH-----HHHHHHhccCchHHHHHHHHHHHh
Confidence            77777777777665432211    11     223555568999888876544333

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=8.2e-05  Score=74.66  Aligned_cols=302  Identities=13%  Similarity=0.111  Sum_probs=191.2

Q ss_pred             HHHHHH--HhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc
Q 010080          186 QCAWAL--GNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK  263 (518)
Q Consensus       186 ~a~~~L--~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~  263 (518)
                      .++|++  -.++......|.-+.+..+.++|+.+|..++.-+.-.++..++|+.-...+  -.+.+...+++..|++++.
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn--L~~~fL~~~iIdvl~~~v~  483 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN--LGAGFLEKSIIDVLVNLVM  483 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccc--hHHHHHHhhHHHHHHHHhh
Confidence            344544  445554456788888999999999999998877777788888887644322  2344457899999999999


Q ss_pred             cCChhHHHHHHHHHHHhhcCCch--hhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC---cccceeeccC
Q 010080          264 RADEELTTEVAWVVVYLSALSNV--ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS---STISDVLVPG  338 (518)
Q Consensus       264 ~~d~~v~~~a~~~L~~L~~~~~~--~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~---~~~~~~i~~G  338 (518)
                      +.|+.++....|.+.++.-+.+.  ..+.+.. -.+..++++. +.+...++..++.++.|+...+.   ...+..+...
T Consensus       484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lak-ig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~  561 (743)
T COG5369         484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAK-IGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT  561 (743)
T ss_pred             cchhhhhhcchhhhhhhhhcCcchhhhhhHHh-cCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecC
Confidence            99999999999999999876543  3454544 4468888877 57888999999999999987432   2334444321


Q ss_pred             CCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHHHHHHhcC--C---------ChhHHHHH
Q 010080          339 HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLST--S---------PFDIKKEV  406 (518)
Q Consensus       339 ~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~Li~lL~~--~---------~~~v~~eA  406 (518)
                      .  ..-+...|...+...+|-...+.|+.|-++++.+.+..+.+++. .++..+..+|-.  +         +.++-.--
T Consensus       562 p--~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~  639 (743)
T COG5369         562 P--RRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPI  639 (743)
T ss_pred             h--HHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcc
Confidence            0  11245566667777788777788999999999876666555543 455555555411  1         11122222


Q ss_pred             HHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch--HHHHHhhcc---CCHHHHHHHHHHHHHHHccCCCC-------cc
Q 010080          407 AYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL--SGFIDLVRS---ADIEAARLGLQFMELVLRGMPNH-------EG  474 (518)
Q Consensus       407 ~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i--~~L~~lL~~---~d~~~~~~~l~~l~~il~~~~~~-------~~  474 (518)
                      ..+..++..++   ++-            +.+..  |++=.+=+.   ++.++.....+.+.++.-.-.+.       +.
T Consensus       640 s~~~v~l~e~~---d~f------------~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR  704 (743)
T COG5369         640 SYTIVNLSENS---DKF------------KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVER  704 (743)
T ss_pred             ceeeecccccc---ccc------------ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHH
Confidence            22333332210   010            11111  222222111   22345555566666654221111       12


Q ss_pred             hhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080          475 TKLVEREDGIDAMERFQFHENEDLRNMANGLVDK  508 (518)
Q Consensus       475 ~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~  508 (518)
                      ++.+.+.|.-+-+..+|.|+++.+++++...+..
T Consensus       705 ~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~  738 (743)
T COG5369         705 IQILCANGIREWLVKIQAKDSLIVREKIGTALEN  738 (743)
T ss_pred             HHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence            3455566777788999999999999999888763

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.15  E-value=4.4e-06  Score=59.25  Aligned_cols=55  Identities=33%  Similarity=0.496  Sum_probs=48.4

Q ss_pred             hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010080          358 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL  413 (518)
Q Consensus       358 ~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl  413 (518)
                      +.+|..|+|+|++++.+.++..+.... .++|.|+.+|++++..||..|+|+|+||
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998888887777554 4999999999999999999999999985

...

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.14  E-value=0.0012  Score=70.81  Aligned_cols=168  Identities=16%  Similarity=0.131  Sum_probs=127.6

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHH
Q 010080           91 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPL  170 (518)
Q Consensus        91 ~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~  170 (518)
                      +.+++...++.|++.+-...+.+.+-       +-+.|-++.+.... +.++.+-.-.-|.+++...++   ..+-+++.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dm-------ssLf~dViK~~~tr-d~ElKrL~ylYl~~yak~~P~---~~lLavNt   96 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDM-------SSLFPDVIKNVATR-DVELKRLLYLYLERYAKLKPE---LALLAVNT   96 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhccCHH---HHHHHHHH
Confidence            45677888999997666556655431       33567777777743 466666677788888887773   33446788


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 010080          171 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK  250 (518)
Q Consensus       171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~  250 (518)
                      +.+=|++ +|+.+|..|+++++.+=.       .-+-..+++++.+++.++++.++++|+.|+.++-+-+     .+.+.
T Consensus        97 i~kDl~d-~N~~iR~~AlR~ls~l~~-------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-----~~l~~  163 (757)
T COG5096          97 IQKDLQD-PNEEIRGFALRTLSLLRV-------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-----KDLYH  163 (757)
T ss_pred             HHhhccC-CCHHHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-----Hhhhh
Confidence            8888887 899999999999997643       2223346889999999999999999999999998653     23444


Q ss_pred             hhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          251 VDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       251 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      ..|.+..+..++.+.|+.+...|+.+|..+..
T Consensus       164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         164 ELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             cccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            56788888889999999999999999988775

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.11  E-value=0.00051  Score=68.72  Aligned_cols=186  Identities=24%  Similarity=0.297  Sum_probs=142.7

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      ..++.++.++.+ .+..++..+++.++.+...           -++|.+..++.+.+..++..+..+|+.+-        
T Consensus        43 ~~~~~~~~~l~~-~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------  102 (335)
T COG1413          43 EAADELLKLLED-EDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--------  102 (335)
T ss_pred             hhHHHHHHHHcC-CCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence            367788888987 5899999999998877541           25889999999999999999999777662        


Q ss_pred             hhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC----------c--cc
Q 010080          246 TELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS----------L--QL  312 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~----------~--~v  312 (518)
                           ....+|.|+.++. +++..++..+.|+|..+-+.           ..+..++..+. +..          .  .+
T Consensus       103 -----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~-~~~~~~a~~~~~~~~~~~  165 (335)
T COG1413         103 -----DPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQ-DEDSGSAAAALDAALLDV  165 (335)
T ss_pred             -----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhc-cchhhhhhhhccchHHHH
Confidence                 1256778888888 58889999999999988752           22555666663 222          1  24


Q ss_pred             hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHH
Q 010080          313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL  392 (518)
Q Consensus       313 ~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li  392 (518)
                      +..+...++.+-.                 ...++.+...+.+....+|..|..+|+.+....         ..+.+.+.
T Consensus       166 r~~a~~~l~~~~~-----------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~  219 (335)
T COG1413         166 RAAAAEALGELGD-----------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLV  219 (335)
T ss_pred             HHHHHHHHHHcCC-----------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHH
Confidence            5556666665431                 247888999999999999999999999997654         33667888


Q ss_pred             HHhcCCChhHHHHHHHHHHHhc
Q 010080          393 HLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       393 ~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                      ..+.+.+..++..++.+++.+-
T Consensus       220 ~~~~~~~~~vr~~~~~~l~~~~  241 (335)
T COG1413         220 KALSDESLEVRKAALLALGEIG  241 (335)
T ss_pred             HHhcCCCHHHHHHHHHHhcccC
Confidence            9999999999999999998873

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.00035  Score=72.55  Aligned_cols=218  Identities=16%  Similarity=0.147  Sum_probs=158.4

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      .-+-++.+|++ +.+=++..|+..+..+.-..|+   .+.  ..+|.|..-|..+++.++..|+..++.|++. +|+.+.
T Consensus       145 La~Dv~tLL~s-skpYvRKkAIl~lykvFLkYPe---Alr--~~FprL~EkLeDpDp~V~SAAV~VICELArK-nPknyL  217 (877)
T KOG1059|consen  145 LADDVFTLLNS-SKPYVRKKAILLLYKVFLKYPE---ALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARK-NPQNYL  217 (877)
T ss_pred             HHHHHHHHHhc-CchHHHHHHHHHHHHHHHhhhH---hHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhh-CCcccc
Confidence            45567788877 6788999999999998864443   333  2588899999999999999999999999975 566542


Q ss_pred             hHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC-ccchhhhhhhh--hh
Q 010080          247 ELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS-LQLLIPVLRSL--GN  322 (518)
Q Consensus       247 ~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~-~~v~~~al~~L--~n  322 (518)
                            ..-|.+.++|. +.+..++.-.+-.++.|+--.+.--     ..+++.|.+++. +.. ..++-.+..++  ++
T Consensus       218 ------~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~-sT~AmSLlYECvNTVVa~s  285 (877)
T KOG1059|consen  218 ------QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELME-STVAMSLLYECVNTVVAVS  285 (877)
T ss_pred             ------cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHH-hhHHHHHHHHHHHHheeeh
Confidence                  56688888887 5667888999999999987555322     346778888774 322 11222222222  25


Q ss_pred             hhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhH
Q 010080          323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDI  402 (518)
Q Consensus       323 l~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v  402 (518)
                      ++.|.++....+.        =.+..|..++.+.+++++.-++.+++-|....+..+++-.     ..++..|.+.|+.+
T Consensus       286 ~s~g~~d~~asiq--------LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD~SI  352 (877)
T KOG1059|consen  286 MSSGMSDHSASIQ--------LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKDESI  352 (877)
T ss_pred             hccCCCCcHHHHH--------HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCCchh
Confidence            5555433222221        1567788888999999999999999999887777666543     36889999999999


Q ss_pred             HHHHHHHHHHhcCC
Q 010080          403 KKEVAYVLGNLCVS  416 (518)
Q Consensus       403 ~~eA~~aL~nl~~~  416 (518)
                      |-.|+-.|.-++..
T Consensus       353 RlrALdLl~gmVsk  366 (877)
T KOG1059|consen  353 RLRALDLLYGMVSK  366 (877)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999998763

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.10  E-value=0.0029  Score=66.13  Aligned_cols=380  Identities=14%  Similarity=0.177  Sum_probs=210.1

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCC------ChHHHHHHHHHHHHHhcCChHH
Q 010080           87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS------PDEQLLEAAWCLTNIAAGKQEE  160 (518)
Q Consensus        87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~------~~~~~~eA~~~L~nia~~~~~~  160 (518)
                      ++..-+|+|.+.+--.+..+.+..+.....  ...+...++|-+....-...      +..+..+.+-.|.+=....   
T Consensus       641 l~rEf~sPDeemkkivLKVv~qcc~t~Gv~--~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~---  715 (1172)
T KOG0213|consen  641 LIREFGSPDEEMKKIVLKVVKQCCATDGVE--PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD---  715 (1172)
T ss_pred             HHHhhCCChHHHHHHHHHHHHHHhcccCCC--HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch---
Confidence            444456777777777777777754444333  34666777776665543110      0111111111111111000   


Q ss_pred             HHHhcCChHHHHHhhcCCCCHHHH----HHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHH
Q 010080          161 TKALLPALPLLIAHLGEKSSSPVA----EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALS  234 (518)
Q Consensus       161 ~~~v~~~v~~Lv~lL~~~~~~~v~----~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~  234 (518)
                           ..|...+.-|.+ ++++-+    +.+-.+++++-.-+-   +.-++.-.+..++..++..  ...+.-....+++
T Consensus       716 -----~~v~R~v~~lkd-e~e~yrkm~~etv~ri~~~lg~~di---derleE~lidgil~Afqeqtt~d~vml~gfg~V~  786 (1172)
T KOG0213|consen  716 -----PIVSRVVLDLKD-EPEQYRKMVAETVSRIVGRLGAADI---DERLEERLIDGILYAFQEQTTEDSVMLLGFGTVV  786 (1172)
T ss_pred             -----HHHHHHhhhhcc-ccHHHHHHHHHHHHHHHhccccccc---cHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHH
Confidence                 134555555655 444444    444445555432111   1112223455555555543  3344555555555


Q ss_pred             HhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC--CchhhhHHHhcCchHHHHHHHccCCCccc
Q 010080          235 NLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL--SNVATSLLVKSGVLQLLVERLATSNSLQL  312 (518)
Q Consensus       235 nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v  312 (518)
                      |-..+. -++.     ...++..++..|++..+.++..++-.++.|+.-  .-..-+.+-..|+  .|.+.| ....+++
T Consensus       787 ~~lg~r-~kpy-----lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEv  857 (1172)
T KOG0213|consen  787 NALGGR-VKPY-----LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEV  857 (1172)
T ss_pred             HHHhhc-cccc-----hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHH
Confidence            533221 1221     246677788899999999999999988888741  0011123323343  366777 4678888


Q ss_pred             hhhhhhhhhhhhcCC--CcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHH
Q 010080          313 LIPVLRSLGNLVAGD--SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL  390 (518)
Q Consensus       313 ~~~al~~L~nl~~~~--~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~  390 (518)
                      +-..+.+|..|+...  ...+.. +       .+++|.|..+|.+.+.+|+..+.-.++-|+..+++.+..=--..+---
T Consensus       858 LgsILgAikaI~nvigm~km~pP-i-------~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfe  929 (1172)
T KOG0213|consen  858 LGSILGAIKAIVNVIGMTKMTPP-I-------KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFE  929 (1172)
T ss_pred             HHHHHHHHHHHHHhccccccCCC-h-------hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHH
Confidence            776666666655322  112222 2       379999999999999999999999999999877664332111123345


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-----------------------c---CchHHHH
Q 010080          391 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-----------------------R---GCLSGFI  444 (518)
Q Consensus       391 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-----------------------~---g~i~~L~  444 (518)
                      |+++|++.+..+|+.|.-+++.++..-    | |   ++....|++                       +   .++|.|.
T Consensus       930 LlelLkahkK~iRRaa~nTfG~IakaI----G-P---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalm 1001 (1172)
T KOG0213|consen  930 LLELLKAHKKEIRRAAVNTFGYIAKAI----G-P---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALM 1001 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHhc----C-H---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHH
Confidence            788888888899999999988887531    1 3   222333322                       1   2466666


Q ss_pred             HhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080          445 DLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK  508 (518)
Q Consensus       445 ~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~  508 (518)
                      +=...++..++.-+|+++..+++.-.+- ....+  +-....|++-..+.+.--+..|..++.+
T Consensus      1002 neYrtPe~nVQnGVLkalsf~Feyigem-skdYi--yav~PlleDAlmDrD~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 1002 NEYRTPEANVQNGVLKALSFMFEYIGEM-SKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKH 1062 (1172)
T ss_pred             hhccCchhHHHHhHHHHHHHHHHHHHHH-hhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHH
Confidence            6666677778888888888887643210 01111  1123344554555555555555555554

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=0.0012  Score=68.60  Aligned_cols=296  Identities=16%  Similarity=0.210  Sum_probs=176.5

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080          172 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELI  249 (518)
Q Consensus       172 v~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i  249 (518)
                      -+=|.+ .|+....-|+.+++|+-+  .+++..+..  -||   ++|-++  ..-++..++.||..|.+.. |.    .+
T Consensus       117 knDL~s-rn~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~s-pD----l~  183 (938)
T KOG1077|consen  117 KNDLSS-RNPTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKS-PD----LV  183 (938)
T ss_pred             Hhhhhc-CCcHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcC-cc----cc
Confidence            333444 577888999999999975  344443322  233   555544  3567888999999998763 32    44


Q ss_pred             HhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc----c------------CCCccch
Q 010080          250 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA----T------------SNSLQLL  313 (518)
Q Consensus       250 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~----~------------~~~~~v~  313 (518)
                      ...+....++++|.+.+-.+...+...+-.|+...++...     +.++.-+..|.    .            -+.+=..
T Consensus       184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~  258 (938)
T KOG1077|consen  184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ  258 (938)
T ss_pred             ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence            4557899999999988888888888888888876554432     22232222221    1            1233345


Q ss_pred             hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc----C---hhhhHHHHHHHHHHhccCCHHHHHHHHhCC
Q 010080          314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS----E---HRVLKKEAAWVLSNIAAGSVEHKQLIHSSE  386 (518)
Q Consensus       314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~----~---~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~  386 (518)
                      ..++|.|.+.-+..|..+..-+       ..++..++...+.    .   +...+....+-.-|++.+-+..-+.+..  
T Consensus       259 vKl~rlLq~~p~~~D~~~r~~l-------~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--  329 (938)
T KOG1077|consen  259 VKLLRLLQIYPTPEDPSTRARL-------NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--  329 (938)
T ss_pred             HHHHHHHHhCCCCCCchHHHHH-------HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--
Confidence            6778888887554444333221       1233333333321    1   1123333344444444432222222222  


Q ss_pred             CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc-cCCHHHHHHHHHHHHHH
Q 010080          387 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELV  465 (518)
Q Consensus       387 ~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-~~d~~~~~~~l~~l~~i  465 (518)
                      .+..|.++|++.+..+|.-|...++.++...            .....++.. ...++..|+ ..|..+++.+++.|+.+
T Consensus       330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~------------~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~m  396 (938)
T KOG1077|consen  330 AVNQLGQFLSHRETNIRYLALESMCKLASSE------------FSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAM  396 (938)
T ss_pred             HHHHHHHHhhcccccchhhhHHHHHHHHhcc------------chHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHH
Confidence            4667889999999999999999999998741            112222222 667788888 78999999999999999


Q ss_pred             HccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080          466 LRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE  512 (518)
Q Consensus       466 l~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~  512 (518)
                      +...   +...++.  +-++.|+..-.+--+|+.-++.-+-|+|-.|
T Consensus       397 cD~~---Nak~IV~--elLqYL~tAd~sireeivlKvAILaEKyAtD  438 (938)
T KOG1077|consen  397 CDVS---NAKQIVA--ELLQYLETADYSIREEIVLKVAILAEKYATD  438 (938)
T ss_pred             hchh---hHHHHHH--HHHHHHhhcchHHHHHHHHHHHHHHHHhcCC
Confidence            7542   1223333  3355555433333456666776666666443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=0.004  Score=64.23  Aligned_cols=298  Identities=17%  Similarity=0.171  Sum_probs=180.5

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHH-HHHHHHHHhcC-ChHHHHHhcCC
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAAG-KQEETKALLPA  167 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~e-A~~~L~nia~~-~~~~~~~v~~~  167 (518)
                      .+.+.+...+..|...+..++.   +..+...-+.+.+..|..++....+ ...+| ++.+....+.. .+...-.++..
T Consensus       142 ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~~-~~~re~~~~a~~~~~~~Lg~~~EPyiv~~  217 (569)
T KOG1242|consen  142 LLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKKS-ALNREAALLAFEAAQGNLGPPFEPYIVPI  217 (569)
T ss_pred             HhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccch-hhcHHHHHHHHHHHHHhcCCCCCchHHhh
Confidence            3346677777777777766443   2445556677888888888875442 23344 22222222211 11222233356


Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  247 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  247 (518)
                      +|.++.-..+ ....|++.|..+...+..--+.+.    ..-.+|+++.-+.........+++-.+..+.... |. ..+
T Consensus       218 lp~il~~~~d-~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~-qLs  290 (569)
T KOG1242|consen  218 LPSILTNFGD-KINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PK-QLS  290 (569)
T ss_pred             HHHHHHHhhc-cchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hH-HHH
Confidence            6777766655 567898888887776653211111    1113455554444445566778888888887653 22 222


Q ss_pred             HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC-CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080          248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  326 (518)
Q Consensus       248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  326 (518)
                      . ....++|.+...|.++.++++..+.-++-.++.- ++..++     -.+|.|++.+. +++- ....++..|+.-.. 
T Consensus       291 ~-~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~-dp~~-~~~e~~~~L~~ttF-  361 (569)
T KOG1242|consen  291 L-CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALA-DPSC-YTPECLDSLGATTF-  361 (569)
T ss_pred             H-HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhc-Cccc-chHHHHHhhcceee-
Confidence            2 3468999999999999999999999999888852 122232     34677888774 3331 23445555553221 


Q ss_pred             CCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC--CHHHHHHHHhCCCHHHHHHHhcCCChhHHH
Q 010080          327 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG--SVEHKQLIHSSEALALLLHLLSTSPFDIKK  404 (518)
Q Consensus       327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~--~~~~~~~li~~~~i~~Li~lL~~~~~~v~~  404 (518)
                          +.. ++.-  .-.-++|.|.+-+...+..+++.++-++.|++.-  ++..+..++.. ++|-|-..+.+..+++|.
T Consensus       362 ----V~~-V~~p--sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~  433 (569)
T KOG1242|consen  362 ----VAE-VDAP--SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRA  433 (569)
T ss_pred             ----eee-ecch--hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHH
Confidence                111 1110  0011345555555556778899999999999974  35555555543 788888888888999999


Q ss_pred             HHHHHHHHhcC
Q 010080          405 EVAYVLGNLCV  415 (518)
Q Consensus       405 eA~~aL~nl~~  415 (518)
                      .|+.+|+-+..
T Consensus       434 vaarAL~~l~e  444 (569)
T KOG1242|consen  434 VAARALGALLE  444 (569)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.005  Score=66.72  Aligned_cols=330  Identities=15%  Similarity=0.166  Sum_probs=200.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHH-----HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080           97 QKRVNALRELRRLLSRFEFPPIETAL-----KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALP  169 (518)
Q Consensus        97 ~~~~~a~~~lr~lls~~~~~~~~~~i-----~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~  169 (518)
                      +....++.+|+++++..+  -...+.     --|..|.+..+|.....+.+|.-|+.++.-+.+..+ +...++  +.+.
T Consensus      1740 ~~v~m~LtAL~Nli~~nP--dlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANP--DLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLT 1816 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCc--chhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHH
Confidence            356678999999988754  222222     257888888888865555666667777766666554 444444  5788


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhhcCCC--CCchh
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPD--PKPAT  246 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~--~~~~~  246 (518)
                      .|+++|-+  -+..++.++..|..++. +++.-...+.+|++..++.++... ....+.+++-.|..|...+-  |+...
T Consensus      1817 ~LL~lLHS--~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~I 1893 (2235)
T KOG1789|consen 1817 TLLTLLHS--QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTI 1893 (2235)
T ss_pred             HHHHHHhc--ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceee
Confidence            88888865  67899999999999998 678888899999999999877644 67778888888888875432  22211


Q ss_pred             hHHH---------hhchHHHHHHHhc--cCChhH------HHHHHHHHHHhhc--------CC------chh---h----
Q 010080          247 ELIK---------VDGLLDAILRHLK--RADEEL------TTEVAWVVVYLSA--------LS------NVA---T----  288 (518)
Q Consensus       247 ~~i~---------~~~~l~~L~~lL~--~~d~~v------~~~a~~~L~~L~~--------~~------~~~---~----  288 (518)
                      ..+.         ..+.....++.+.  ++++++      +......+..+..        ++      ++.   .    
T Consensus      1894 TL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~ 1973 (2235)
T KOG1789|consen 1894 TLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEAD 1973 (2235)
T ss_pred             ehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhc
Confidence            1110         0112233444444  233332      1111111221110        00      000   0    


Q ss_pred             -----------hHHH------------hcCchHHHHHHHccCCCc--cchhhhhhhhhhhhcCCCcccceeeccCCCchh
Q 010080          289 -----------SLLV------------KSGVLQLLVERLATSNSL--QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD  343 (518)
Q Consensus       289 -----------~~~~------------~~g~~~~Lv~lL~~~~~~--~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~  343 (518)
                                 ..+.            -.|.+..+.+++. .+.+  ....-.-.++..+....+.-.+.+=.      .
T Consensus      1974 ~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~-~~~peqh~l~lLt~A~V~L~r~hP~LADqip~------L 2046 (2235)
T KOG1789|consen 1974 KECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMS-RPTPEQHELDLLTKAFVELVRHHPNLADQLPS------L 2046 (2235)
T ss_pred             cCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhc-CCCcccchhHHHHHHHHHHHHhCcchhhhCCC------c
Confidence                       0000            1123344444443 2222  12222222333344444444444432      3


Q ss_pred             hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCC
Q 010080          344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGK  423 (518)
Q Consensus       344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~  423 (518)
                      |.+|.++..+.+.+..+-+.|+.+|..++... -.+.++.....+..++..|+..-. .---|+.+|..+.....     
T Consensus      2047 GylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~----- 2119 (2235)
T KOG1789|consen 2047 GYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNT----- 2119 (2235)
T ss_pred             cchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHhcch-HHHHHHHHHHHHHHHhH-----
Confidence            68999999999988888899999999998753 455566665666778888766442 23367788877765321     


Q ss_pred             chhHHHHHHHHHhcCchHHHHHhhccC
Q 010080          424 PKLIQEHLVSLVGRGCLSGFIDLVRSA  450 (518)
Q Consensus       424 ~~~~~~~~~~l~~~g~i~~L~~lL~~~  450 (518)
                          .+-+-+.++.|.++.|+.+|++.
T Consensus      2120 ----~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2120 ----GELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             ----HHHHHHHhccCcHHHHHHHhccc
Confidence                25566778999999999999863

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.04  E-value=2.1e-05  Score=64.73  Aligned_cols=131  Identities=17%  Similarity=0.084  Sum_probs=109.4

Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  247 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  247 (518)
                      +..|+.-.+...+.+-+++..--|+|.|. +|.+-..+.+..++...+..|..++..+.+.++..|+|+|-.+   ...+
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~---~n~~   93 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK---TNAK   93 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh---HHHH
Confidence            44455555555789999999999999999 5678889999999999999999999999999999999999653   3456


Q ss_pred             HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHH
Q 010080          248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE  302 (518)
Q Consensus       248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~  302 (518)
                      .|..++++|.++..+.++.+.++..++.++.+|+.+.....+.+....++..+..
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r  148 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR  148 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence            7778999999999999999999999999999999887767777766655555444

>PF05536 Neurochondrin: Neurochondrin

Probab=98.04  E-value=0.00029  Score=74.38  Aligned_cols=238  Identities=14%  Similarity=0.092  Sum_probs=160.9

Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh---hHHHHHhcCChhHHHhhhCC-------CChhHHHHHHHHHHHhh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE---FRNVLLSQGALPPLARMMLP-------NKGSTVRTAAWALSNLI  237 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~---~r~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~  237 (518)
                      +...+.+|++ .+.+=+-.++-.+.+++..++.   .+..+.+.=+.+.|-+||.+       +....+.-++..|+.+|
T Consensus         7 l~~c~~lL~~-~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    7 LEKCLSLLKS-ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHhcc-CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            4455677776 4466677777778888765543   23456677677888899985       23567788888899999


Q ss_pred             cCCCCCchhhHHHhhchHHHHHHHhccCCh-hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhh
Q 010080          238 KGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  316 (518)
Q Consensus       238 ~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~a  316 (518)
                      +.++-....++   -+-+|.|+.++.+.+. ++..+++-+|..++ ..++..+.+++.|.++.|++.+.+  .+.....+
T Consensus        86 ~~~~~a~~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A  159 (543)
T PF05536_consen   86 RDPELASSPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIA  159 (543)
T ss_pred             CChhhhcCHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence            75332223333   3789999999987777 99999999999999 578889999999999999999853  55667889


Q ss_pred             hhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHH-HHHHH----hCCCHHHH
Q 010080          317 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH-KQLIH----SSEALALL  391 (518)
Q Consensus       317 l~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~-~~~li----~~~~i~~L  391 (518)
                      +.++.+++...+...-  -+.. ..-..+++.+...+...+...+-++|..|+++....+.. ....-    -..+..-+
T Consensus       160 l~lL~~Lls~~~~~~~--~~~~-~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl  236 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSW--AEDS-QLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGL  236 (543)
T ss_pred             HHHHHHHHHhcchhhh--hhhH-HHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHH
Confidence            9999998865442110  0000 001245666777777666677888999999998765211 11111    12355566


Q ss_pred             HHHhcCC-ChhHHHHHHHHHHHhcC
Q 010080          392 LHLLSTS-PFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       392 i~lL~~~-~~~v~~eA~~aL~nl~~  415 (518)
                      ..+|++. .+.-|..|....+.+..
T Consensus       237 ~~iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  237 RDILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            7777664 44555555555555543

>PF05536 Neurochondrin: Neurochondrin

Probab=98.03  E-value=0.00042  Score=73.23  Aligned_cols=241  Identities=20%  Similarity=0.175  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcH--HHHHHcCCHHHHHHHhcCCC-----ChH-HHHHHHHHHH
Q 010080           80 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPI--ETALKAGAIPVLVQCLAFGS-----PDE-QLLEAAWCLT  151 (518)
Q Consensus        80 ~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~--~~~i~~g~ip~Lv~~L~~~~-----~~~-~~~eA~~~L~  151 (518)
                      .+++..+++   ++.+-+.++.|+-.+.|++...+....  ..+.++=..+.|-++|....     +.. .+--|+.+|+
T Consensus         6 ~l~~c~~lL---~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    6 SLEKCLSLL---KSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             HHHHHHHHh---ccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            345555555   477778999999999998876543222  23667666788888887632     122 2233888888


Q ss_pred             HHhcCChHH-HHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHH
Q 010080          152 NIAAGKQEE-TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAA  230 (518)
Q Consensus       152 nia~~~~~~-~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~  230 (518)
                      .+|....-. -..+++-||.|+..+.++++.++...|..+|..|+. +++-+..+++.|+++.|...+.+ .+...+.+.
T Consensus        83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   83 AFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             HHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            888733211 245568999999999885555999999999999995 88999999999999999999887 455677777


Q ss_pred             HHHHHhhcCCCCCchhh-HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchh-hhHHHh----cCchHHHHHHH
Q 010080          231 WALSNLIKGPDPKPATE-LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA-TSLLVK----SGVLQLLVERL  304 (518)
Q Consensus       231 ~~L~nL~~~~~~~~~~~-~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~-~~~~~~----~g~~~~Lv~lL  304 (518)
                      ..+.+++.....+.-.+ .-....+++.+.+.+...........|-.|+.+....+.. ......    ..+...+..+|
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            77777775432111000 0012355666777776666677778888888887654211 111111    12334455556


Q ss_pred             ccCCCccchhhhhhhhhhhhc
Q 010080          305 ATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       305 ~~~~~~~v~~~al~~L~nl~~  325 (518)
                      .+...+.-+.+++...+.+..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            544556667777777776653

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.94  E-value=0.0018  Score=65.02  Aligned_cols=237  Identities=17%  Similarity=0.158  Sum_probs=169.3

Q ss_pred             hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC-CccchhhhhhhhhhhhcCCCcc
Q 010080          252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSST  330 (518)
Q Consensus       252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~~~~~  330 (518)
                      ....+.+..++-+++.+++..+..++.|+.. +....+.+.+.++--.++.-|.... ...-++.|++.+..+..-.+. 
T Consensus        24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-  101 (371)
T PF14664_consen   24 SFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-  101 (371)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-
Confidence            3455666656666669999999999999997 4567788888776666666664322 223467899999888765321 


Q ss_pred             cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHH
Q 010080          331 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  410 (518)
Q Consensus       331 ~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL  410 (518)
                      .+. +      ..+++..++.+..+.+...+.-|.-+|.-++-.+|+   .+..+|++..|++.+.++..++....+.++
T Consensus       102 ~~~-~------~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l  171 (371)
T PF14664_consen  102 PKE-I------PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTL  171 (371)
T ss_pred             ccc-C------CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence            111 1      347999999999999999999999999999987765   467899999999999888878888888999


Q ss_pred             HHhcCCCCCCCCCchhHHHHHHHHHhc----CchHHHHHhh---ccCCH--HHHHHHHHHHHHHHccCCCCcchhHHHhh
Q 010080          411 GNLCVSPTEGEGKPKLIQEHLVSLVGR----GCLSGFIDLV---RSADI--EAARLGLQFMELVLRGMPNHEGTKLVERE  481 (518)
Q Consensus       411 ~nl~~~~~~~~~~~~~~~~~~~~l~~~----g~i~~L~~lL---~~~d~--~~~~~~l~~l~~il~~~~~~~~~~~ie~~  481 (518)
                      ..+...+.           ..+++...    -++.++.+.-   ..++.  +-...+-.++..+|+.++.- ........
T Consensus       172 L~lLd~p~-----------tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL-l~l~~~~~  239 (371)
T PF14664_consen  172 LYLLDSPR-----------TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL-LYLSMNDF  239 (371)
T ss_pred             HHHhCCcc-----------hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce-eeeecCCc
Confidence            99987653           12333332    2455555551   11233  45667788899999987641 12223445


Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080          482 DGIDAMERFQFHENEDLRNMANGLVDKYFGE  512 (518)
Q Consensus       482 ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~  512 (518)
                      .|+..|.+....+++++++....++=..|.-
T Consensus       240 ~~lksLv~~L~~p~~~ir~~Ildll~dllri  270 (371)
T PF14664_consen  240 RGLKSLVDSLRLPNPEIRKAILDLLFDLLRI  270 (371)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence            6888888888999999998877777666543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.93  E-value=0.0053  Score=61.35  Aligned_cols=248  Identities=25%  Similarity=0.277  Sum_probs=166.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  160 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~  160 (518)
                      ++.+.+.+   .+.+...+..|...+..+            -..-++|.+..+|...+ ..++..|+.+|..+-..    
T Consensus        45 ~~~~~~~l---~~~~~~vr~~aa~~l~~~------------~~~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~----  104 (335)
T COG1413          45 ADELLKLL---EDEDLLVRLSAAVALGEL------------GSEEAVPLLRELLSDED-PRVRDAAADALGELGDP----  104 (335)
T ss_pred             HHHHHHHH---cCCCHHHHHHHHHHHhhh------------chHHHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh----
Confidence            34444444   466777888887764431            12346888999998655 44556677766666532    


Q ss_pred             HHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCCh------------hHHHH
Q 010080          161 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG------------STVRT  228 (518)
Q Consensus       161 ~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~------------~~~~~  228 (518)
                           .++|.|+.+|...++..++..|+++|+.+-..           ..+.+++..++....            .++..
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence                 25889999998557899999999999987642           137777777776541            23444


Q ss_pred             HHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC
Q 010080          229 AAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN  308 (518)
Q Consensus       229 a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~  308 (518)
                      +.-.+..+-             ....++.+..++.+.+..++..+..+|..+....         ..+...+...+ ...
T Consensus       169 a~~~l~~~~-------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~-~~~  225 (335)
T COG1413         169 AAEALGELG-------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKAL-SDE  225 (335)
T ss_pred             HHHHHHHcC-------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHh-cCC
Confidence            444444442             2345677888888888889999999998888633         24456666666 577


Q ss_pred             CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCH
Q 010080          309 SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL  388 (518)
Q Consensus       309 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i  388 (518)
                      +..++..++..+|.+-..                 ...+.+...+...+..++..+...+..+  +.         ....
T Consensus       226 ~~~vr~~~~~~l~~~~~~-----------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~---------~~~~  277 (335)
T COG1413         226 SLEVRKAALLALGEIGDE-----------------EAVDALAKALEDEDVILALLAAAALGAL--DL---------AEAA  277 (335)
T ss_pred             CHHHHHHHHHHhcccCcc-----------------hhHHHHHHHHhccchHHHHHHHHHhccc--Cc---------hhhH
Confidence            888888888888876422                 3677778888877776666555555411  11         1235


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          389 ALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       389 ~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      ..+...+.+.+..++.++++++.-+..
T Consensus       278 ~~l~~~~~~~~~~~~~~~~~~l~~~~~  304 (335)
T COG1413         278 LPLLLLLIDEANAVRLEAALALGQIGQ  304 (335)
T ss_pred             HHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence            567777788888888888888877643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.0035  Score=67.84  Aligned_cols=327  Identities=13%  Similarity=0.107  Sum_probs=208.0

Q ss_pred             HHHHHHHHhcCChH------HHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC
Q 010080          146 AAWCLTNIAAGKQE------ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML  219 (518)
Q Consensus       146 A~~~L~nia~~~~~------~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~  219 (518)
                      ++.+|.|+.+.+++      ....++|..+.++.+|....+++++.-|+..+.-+.. +.++-..+...|.+..|+.+|.
T Consensus      1745 ~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred             HHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHh
Confidence            88999999987773      3345558899999999887888999999998887776 6788899999998888888875


Q ss_pred             CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCC----chhhhHH---
Q 010080          220 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALS----NVATSLL---  291 (518)
Q Consensus       220 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~----~~~~~~~---  291 (518)
                      + .++.+.-+.-+|+.|+..  ++...+.. ..|++..+..++- +..+..+..++..|+.|....    ...+..+   
T Consensus      1824 S-~PS~R~~vL~vLYAL~S~--~~i~keA~-~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1824 S-QPSMRARVLDVLYALSSN--GQIGKEAL-EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred             c-ChHHHHHHHHHHHHHhcC--cHHHHHHH-hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence            5 467888889999999865  45556654 4677777776654 566788899999998887532    1111111   


Q ss_pred             -------HhcCchHHHHHHHc-cCCCccchh-h-----hhhhhhhhhcC--CCcccceeecc------------------
Q 010080          292 -------VKSGVLQLLVERLA-TSNSLQLLI-P-----VLRSLGNLVAG--DSSTISDVLVP------------------  337 (518)
Q Consensus       292 -------~~~g~~~~Lv~lL~-~~~~~~v~~-~-----al~~L~nl~~~--~~~~~~~~i~~------------------  337 (518)
                             +. +.-...|..+. .+.+++... +     .-..+..++..  ...|....+++                  
T Consensus      1900 P~~f~d~~R-D~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1900 PEIFADSLR-DSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred             hHHHHHHHh-cCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence                   11 11255556553 234444432 1     11122222210  00111111111                  


Q ss_pred             CC------------------CchhhhHHHHHHHhccChh--hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC
Q 010080          338 GH------------------GITDQVIAVLVKCLKSEHR--VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST  397 (518)
Q Consensus       338 G~------------------~~~~~~l~~L~~lL~~~~~--~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~  397 (518)
                      |+                  .+-.+++..+..++...++  ..-.--..++-.+....|.....+=..|-+|.++..+..
T Consensus      1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred             chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence            11                  1234566666777754443  222222223333444455555556567999999999987


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhH
Q 010080          398 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKL  477 (518)
Q Consensus       398 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~  477 (518)
                      .+..+-+.|..+|-.++.+           .-.++.|....++.+++..+. +.+..+..++++|..++....+. -...
T Consensus      2059 ~n~s~P~SaiRVlH~Lsen-----------~~C~~AMA~l~~i~~~m~~mk-K~~~~~GLA~EalkR~~~r~~~e-LVAQ 2125 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSEN-----------QFCCDAMAQLPCIDGIMKSMK-KQPSLMGLAAEALKRLMKRNTGE-LVAQ 2125 (2235)
T ss_pred             cCCcCcHHHHHHHHHHhhc-----------cHHHHHHhccccchhhHHHHH-hcchHHHHHHHHHHHHHHHhHHH-HHHH
Confidence            7777778899999999764           245788888889999888775 34566778999999998743221 1122


Q ss_pred             HHhhchHHHHHHHh
Q 010080          478 VEREDGIDAMERFQ  491 (518)
Q Consensus       478 ie~~ggl~~l~~L~  491 (518)
                      .-.+|-++.|-.|.
T Consensus      2126 ~LK~gLvpyLL~LL 2139 (2235)
T KOG1789|consen 2126 MLKCGLVPYLLQLL 2139 (2235)
T ss_pred             HhccCcHHHHHHHh
Confidence            23566666665554

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.91  E-value=1.7e-05  Score=62.29  Aligned_cols=87  Identities=28%  Similarity=0.407  Sum_probs=70.8

Q ss_pred             hHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080          297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV  376 (518)
Q Consensus       297 ~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~  376 (518)
                      ++.|++.|.+++++.++..++++||++-                 ...+++.|..++.++++.+|..|+++|+.+-  + 
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~-   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-----------------DPEAIPALIELLKDEDPMVRRAAARALGRIG--D-   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H-
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C-
Confidence            4678888866889999999999999542                 1358999999999999999999999999882  2 


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCC-ChhHHHHHHHHHH
Q 010080          377 EHKQLIHSSEALALLLHLLSTS-PFDIKKEVAYVLG  411 (518)
Q Consensus       377 ~~~~~li~~~~i~~Li~lL~~~-~~~v~~eA~~aL~  411 (518)
                              ...++.|.+++.+. +..+|..|+++|+
T Consensus        61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 --------PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                    23788999999765 5567999999885

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0035  Score=59.27  Aligned_cols=292  Identities=18%  Similarity=0.213  Sum_probs=171.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH-hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080          169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL-SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  247 (518)
Q Consensus       169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  247 (518)
                      -.++.+|.+ .++.|+..|+..+.++.+.  ..+...- +...++.+.+++...++  .+.|+.++.|++...  .. ++
T Consensus         6 ~elv~ll~~-~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l-~~   77 (353)
T KOG2973|consen    6 VELVELLHS-LSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--EL-RK   77 (353)
T ss_pred             HHHHHHhcc-CChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HH-HH
Confidence            356778877 7899999999999998874  2222211 23357778888876655  788999999999653  22 33


Q ss_pred             HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh------cCchHHHHHHHccCCCc--cchhhhhhh
Q 010080          248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK------SGVLQLLVERLATSNSL--QLLIPVLRS  319 (518)
Q Consensus       248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~------~g~~~~Lv~lL~~~~~~--~v~~~al~~  319 (518)
                      .+.. .++..++..+.++...+...+|..|+|++..++.....+..      .| +..++..+.+++..  .-......+
T Consensus        78 ~ll~-~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~-lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   78 KLLQ-DLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSG-LMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHH-HHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccc-hHHHHHHHhCcccccccchhHHHHH
Confidence            3322 37777777777777788888999999999854433332221      33 34444434322211  112234445


Q ss_pred             hhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhH-HHHHHHHHHhccCCHHHHHHHHhC--CCHHHHHHHhc
Q 010080          320 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK-KEAAWVLSNIAAGSVEHKQLIHSS--EALALLLHLLS  396 (518)
Q Consensus       320 L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~-~~a~~~Lsnl~~~~~~~~~~li~~--~~i~~Li~lL~  396 (518)
                      +.|++...... ..+++.    +.-....+..+-. .+..+| ...+.+|-|++.....+- .+++.  +++|.++.=+.
T Consensus       156 f~nls~~~~gR-~l~~~~----k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPla  228 (353)
T KOG2973|consen  156 FANLSQFEAGR-KLLLEP----KRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLA  228 (353)
T ss_pred             HHHHhhhhhhh-hHhcch----hhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcC
Confidence            55665443211 112211    1112333444434 444555 457788999987664333 33332  44555544443


Q ss_pred             CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc-----cCCHHHHHHHHHHHHHHHccCCC
Q 010080          397 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-----SADIEAARLGLQFMELVLRGMPN  471 (518)
Q Consensus       397 ~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-----~~d~~~~~~~l~~l~~il~~~~~  471 (518)
                      ..+ +.-                        .+.+      .-+|.=+++|.     .+|+.+....+++|..++..   
T Consensus       229 gpe-e~s------------------------EEdm------~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT---  274 (353)
T KOG2973|consen  229 GPE-ELS------------------------EEDM------AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT---  274 (353)
T ss_pred             Ccc-ccC------------------------HHHH------hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh---
Confidence            322 100                        0111      11222225554     47889999999999888743   


Q ss_pred             CcchhHHHhhchHHHHHHHh-cCCCHHHHHHHHHHHHhhcC
Q 010080          472 HEGTKLVEREDGIDAMERFQ-FHENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       472 ~~~~~~ie~~ggl~~l~~L~-~~~~~~i~~~a~~il~~~f~  511 (518)
                      ..++..+..-|+...+..|- ..+++++.+.+..+++-.-.
T Consensus       275 ~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  275 RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            24578888889988888774 44788888888777665555

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.87  E-value=0.0014  Score=60.57  Aligned_cols=255  Identities=22%  Similarity=0.261  Sum_probs=151.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      +.+...+.. .+.....++.|+..||.+++...            +..+.+....+ ...+..+.+++|+.....     
T Consensus         6 ~~i~~~L~~-~s~~l~~r~rALf~Lr~l~~~~~------------i~~i~ka~~d~-s~llkhe~ay~LgQ~~~~-----   66 (289)
T KOG0567|consen    6 ETIGNILVN-KSQPLQNRFRALFNLRNLLGPAA------------IKAITKAFIDD-SALLKHELAYVLGQMQDE-----   66 (289)
T ss_pred             HHHHHHHcC-ccHHHHHHHHHHHhhhccCChHH------------HHHHHHhcccc-hhhhccchhhhhhhhccc-----
Confidence            334444432 34556678888888888655432            33333444333 233445677887776643     


Q ss_pred             HHhcCChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 010080          162 KALLPALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP  240 (518)
Q Consensus       162 ~~v~~~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~  240 (518)
                          .++|.|+..|.. +..+.|+..|..+||++.. .          ..++.+-+..+.+...+.+.+-.++..+-...
T Consensus        67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~-~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~  131 (289)
T KOG0567|consen   67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKD  131 (289)
T ss_pred             ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence                258888887754 2457788899999998762 1          23555556665556666666666665544211


Q ss_pred             --------------CCCchhhHHHhhchHHHHHHHhccCChhH--HHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHH
Q 010080          241 --------------DPKPATELIKVDGLLDAILRHLKRADEEL--TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL  304 (518)
Q Consensus       241 --------------~~~~~~~~i~~~~~l~~L~~lL~~~d~~v--~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL  304 (518)
                                    +|.+.  .  ..+-+.-|-..|.+.....  +..+.+.|.++-  .++.         +..+++-|
T Consensus       132 ~~~~~~~~~p~~SvdPa~p--~--~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Eea---------I~al~~~l  196 (289)
T KOG0567|consen  132 IIDKIANSSPYISVDPAPP--A--NLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEA---------INALIDGL  196 (289)
T ss_pred             ccccccccCccccCCCCCc--c--ccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHH---------HHHHHHhc
Confidence                          12211  0  1122333443343333322  223444444332  2222         34445555


Q ss_pred             ccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc--ChhhhHHHHHHHHHHhccCCHHHHHHH
Q 010080          305 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLI  382 (518)
Q Consensus       305 ~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~--~~~~i~~~a~~~Lsnl~~~~~~~~~~l  382 (518)
                      . .++.-.+..+..++|.+-..                 ..+|.|...|..  +++.+|.+|+.+|+.|+..  +     
T Consensus       197 ~-~~SalfrhEvAfVfGQl~s~-----------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~-----  251 (289)
T KOG0567|consen  197 A-DDSALFRHEVAFVFGQLQSP-----------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D-----  251 (289)
T ss_pred             c-cchHHHHHHHHHHHhhccch-----------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H-----
Confidence            3 45666778888999976422                 378888888854  5789999999999999642  2     


Q ss_pred             HhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          383 HSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       383 i~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                          .++.|.+.+.+.+.-|++.+..+|.-+-
T Consensus       252 ----~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  252 ----CVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             ----HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                4667788888888888888888876653

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.0035  Score=66.11  Aligned_cols=289  Identities=17%  Similarity=0.182  Sum_probs=181.3

Q ss_pred             HHHHHHHhc---CCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHH
Q 010080          127 IPVLVQCLA---FGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  203 (518)
Q Consensus       127 ip~Lv~~L~---~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  203 (518)
                      .|..+-.++   .+-.+-+...|+.+|..+-+-.+++...++..|.   .+|.. ..+-|.-.|+.++--+|-+.-+   
T Consensus       141 aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~---~LLaD-~splVvgsAv~AF~evCPerld---  213 (968)
T KOG1060|consen  141 APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIK---KLLAD-RSPLVVGSAVMAFEEVCPERLD---  213 (968)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHH---HHhcC-CCCcchhHHHHHHHHhchhHHH---
Confidence            444444443   2334556667999999999888877775544433   44555 5778899999999988864311   


Q ss_pred             HHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh-----------------------hHHH---hhchHHH
Q 010080          204 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT-----------------------ELIK---VDGLLDA  257 (518)
Q Consensus       204 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~-----------------------~~i~---~~~~l~~  257 (518)
                        +-++-...|++++..-+.=-+..+..+|..-|+..-+.|..                       .++.   ..-++..
T Consensus       214 --LIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~s  291 (968)
T KOG1060|consen  214 --LIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQS  291 (968)
T ss_pred             --HhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHh
Confidence              12234556666665332211222233333323321111100                       0000   1123344


Q ss_pred             HHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeecc
Q 010080          258 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP  337 (518)
Q Consensus       258 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~  337 (518)
                      .-.+|.+.++.+...++.++.+++-  ...     ...+++.|+.+|.  .+..++.-+|+.|..++...+.        
T Consensus       292 tkpLl~S~n~sVVmA~aql~y~lAP--~~~-----~~~i~kaLvrLLr--s~~~vqyvvL~nIa~~s~~~~~--------  354 (968)
T KOG1060|consen  292 TKPLLQSRNPSVVMAVAQLFYHLAP--KNQ-----VTKIAKALVRLLR--SNREVQYVVLQNIATISIKRPT--------  354 (968)
T ss_pred             ccHHHhcCCcHHHHHHHhHHHhhCC--HHH-----HHHHHHHHHHHHh--cCCcchhhhHHHHHHHHhcchh--------
Confidence            4456778899999999999999995  222     2355788999885  4556777788888887755431        


Q ss_pred             CCCchhhhHHHHHHHh-ccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          338 GHGITDQVIAVLVKCL-KSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       338 G~~~~~~~l~~L~~lL-~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                            =+.|++..+. .+.++ .++..=+-+|+||+...  ++..     +++-+-...++.+.++-..|+.+|+.++.
T Consensus       355 ------lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~es--ni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~  421 (968)
T KOG1060|consen  355 ------LFEPHLKSFFVRSSDPTQVKILKLEILSNLANES--NISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCAS  421 (968)
T ss_pred             ------hhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc--cHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence                  1567777765 34444 66677778899997543  2222     46677888888888888889999998876


Q ss_pred             CCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          416 SPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      ..    +           =+...|+..|+.+|.+.|..++..+.-.|..++...
T Consensus       422 ~~----~-----------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~  460 (968)
T KOG1060|consen  422 RI----G-----------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD  460 (968)
T ss_pred             hh----C-----------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence            32    1           123457888999999998888888877788877543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.0026  Score=64.62  Aligned_cols=314  Identities=17%  Similarity=0.174  Sum_probs=180.3

Q ss_pred             HHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080          122 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  200 (518)
Q Consensus       122 i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~  200 (518)
                      .-.+++|..+.++...+ ..+.+.|+..+.||+..........++ +...+.++... ++..|+.. +..|-.+..    
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaD-sd~~V~~~-aeLLdRLik----  153 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSAD-SDQNVRGG-AELLDRLIK----  153 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcC-CccccccH-HHHHHHHHH----
Confidence            34677888888876443 334566888888888432211111122 44445555444 44445433 233332222    


Q ss_pred             hHHHHHhcC---ChhHHHhhhC----CCChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchHHHHHHHhccCChhHHHH
Q 010080          201 FRNVLLSQG---ALPPLARMML----PNKGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLLDAILRHLKRADEELTTE  272 (518)
Q Consensus       201 ~r~~~~~~g---~i~~L~~ll~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~-~~~~l~~L~~lL~~~d~~v~~~  272 (518)
                        +.+.+..   -++.++.++.    ..++..+.....-|.-|-.    .|..+++. ...+++.|.++|.++.++|+..
T Consensus       154 --dIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds----~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~  227 (675)
T KOG0212|consen  154 --DIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS----VPDLEMISYLPSLLDGLFNMLSDSSDEVRTL  227 (675)
T ss_pred             --HhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc----CCcHHHHhcchHHHHHHHHHhcCCcHHHHHH
Confidence              2222221   3555555554    4466666666555555542    23455542 3467788888999999999876


Q ss_pred             HHHHHHHhhc---CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHH
Q 010080          273 VAWVVVYLSA---LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL  349 (518)
Q Consensus       273 a~~~L~~L~~---~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L  349 (518)
                      +--+++.+..   +++...+   -...++.++.-+ .++++.++..|+.-|..++.-.+...-..+       .|++..+
T Consensus       228 ~~t~l~~fL~eI~s~P~s~d---~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~-------s~il~~i  296 (675)
T KOG0212|consen  228 TDTLLSEFLAEIRSSPSSMD---YDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYL-------SGILTAI  296 (675)
T ss_pred             HHHHHHHHHHHHhcCccccC---cccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhh-------hhhhhhc
Confidence            6666654442   2232221   124567777777 477888888888878777755443322222       3677777


Q ss_pred             HHHhccChhh-hHHHHHHHHHHhcc-CCHHHHHHHHhC-CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchh
Q 010080          350 VKCLKSEHRV-LKKEAAWVLSNIAA-GSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKL  426 (518)
Q Consensus       350 ~~lL~~~~~~-i~~~a~~~Lsnl~~-~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~  426 (518)
                      ..++.+..+. ++..+.-+-+-+.. .+.+....=++. .++..|...+++...+.|-+|.--|..+-...      |.+
T Consensus       297 Lpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~------p~q  370 (675)
T KOG0212|consen  297 LPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA------PGQ  370 (675)
T ss_pred             ccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC------cch
Confidence            7777766553 44333322211211 111111111343 36788888899999999999886566654421      211


Q ss_pred             HHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080          427 IQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       427 ~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~  470 (518)
                      +     ........+.|..-|.+.+.+++..+|+.+..|+....
T Consensus       371 l-----~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  371 L-----LVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             h-----hhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence            1     11244678889999999999999999999999987543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.84  E-value=6.5e-05  Score=58.92  Aligned_cols=87  Identities=30%  Similarity=0.388  Sum_probs=67.6

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH
Q 010080          127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL  206 (518)
Q Consensus       127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~  206 (518)
                      ||.|++.|..+.++..+..|+++|+++..  +       .++|.|+.++.+ +++.|+..|+++|+.+-           
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~-------~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~-----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P-------EAIPALIELLKD-EDPMVRRAAARALGRIG-----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H-------HHHHHHHHHHTS-SSHHHHHHHHHHHHCCH-----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H-------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhC-----------
Confidence            68899999555557777889999995532  1       348999999976 89999999999999983           


Q ss_pred             hcCChhHHHhhhCCC-ChhHHHHHHHHHH
Q 010080          207 SQGALPPLARMMLPN-KGSTVRTAAWALS  234 (518)
Q Consensus       207 ~~g~i~~L~~ll~~~-~~~~~~~a~~~L~  234 (518)
                      ....++.|..++.++ +..++..|+++|+
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            223789999988876 4566888888874

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.83  E-value=0.0033  Score=63.14  Aligned_cols=309  Identities=17%  Similarity=0.144  Sum_probs=181.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCChHHHHHh-cCChHH
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGKQEETKAL-LPALPL  170 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~-~~~~eA~~~L~nia~~~~~~~~~v-~~~v~~  170 (518)
                      +++.+.+..|.+.+|.++....  .+..+.+.++--.++..|..++.. ....+|...+..+..-.. ..+.+ .+.+..
T Consensus        36 ~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~~~~~vvra  112 (371)
T PF14664_consen   36 SDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKEIPRGVVRA  112 (371)
T ss_pred             CCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-CcccCCHHHHHH
Confidence            4558888999999999888764  456677888777788888765433 233458887777763311 11112 156777


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 010080          171 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK  250 (518)
Q Consensus       171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~  250 (518)
                      ++....+ +++.++..|+.+|.-++.-+   .+.+..+|++..|+..+..+..++...+++++..+...+  . .+..+.
T Consensus       113 lvaiae~-~~D~lr~~cletL~El~l~~---P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p--~-tR~yl~  185 (371)
T PF14664_consen  113 LVAIAEH-EDDRLRRICLETLCELALLN---PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP--R-TRKYLR  185 (371)
T ss_pred             HHHHHhC-CchHHHHHHHHHHHHHHhhC---HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc--c-hhhhhc
Confidence            8888877 77899999999999999854   456889999999999887665568899999999998653  2 233332


Q ss_pred             hhchHHHHHHHhccC-------Ch--hHHHHHHHHHHHhhcCCchhhhHHHh--cCchHHHHHHHccCCCccchhhhhhh
Q 010080          251 VDGLLDAILRHLKRA-------DE--ELTTEVAWVVVYLSALSNVATSLLVK--SGVLQLLVERLATSNSLQLLIPVLRS  319 (518)
Q Consensus       251 ~~~~l~~L~~lL~~~-------d~--~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~~~~Lv~lL~~~~~~~v~~~al~~  319 (518)
                      ..--+..+..-+.+.       +.  +....+..++..+-. +....-.+..  ...++.|+..| ..++++++...+-.
T Consensus       186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr-sW~GLl~l~~~~~~~lksLv~~L-~~p~~~ir~~Ildl  263 (371)
T PF14664_consen  186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR-SWPGLLYLSMNDFRGLKSLVDSL-RLPNPEIRKAILDL  263 (371)
T ss_pred             CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh-cCCceeeeecCCchHHHHHHHHH-cCCCHHHHHHHHHH
Confidence            222244444333221       22  355566666666554 2222222221  24678888888 47777788877777


Q ss_pred             hhhhhcCCCcc-cceeeccCCC-chhhhHHHHHHHhc--cChhhhHHHHHHHHHHhccCC-HHHHHHHHhCCCHHHHHHH
Q 010080          320 LGNLVAGDSST-ISDVLVPGHG-ITDQVIAVLVKCLK--SEHRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHL  394 (518)
Q Consensus       320 L~nl~~~~~~~-~~~~i~~G~~-~~~~~l~~L~~lL~--~~~~~i~~~a~~~Lsnl~~~~-~~~~~~li~~~~i~~Li~l  394 (518)
                      +..+..-.... ..... .|.. ...+-..---++..  .+.......-..--.|+..+. .--...++++|+++.|+++
T Consensus       264 l~dllrik~p~w~~~~~-~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l  342 (371)
T PF14664_consen  264 LFDLLRIKPPSWTESFL-AGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL  342 (371)
T ss_pred             HHHHHCCCCCCcccchh-hcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            77666432211 11110 0000 00000000000000  000000000000001221111 1123457799999999999


Q ss_pred             hcCC-ChhHHHHHHHHHHHhc
Q 010080          395 LSTS-PFDIKKEVAYVLGNLC  414 (518)
Q Consensus       395 L~~~-~~~v~~eA~~aL~nl~  414 (518)
                      ..+. +..+.+.|...|+++.
T Consensus       343 i~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  343 IESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HhcCCCchHHHHHHHHHHHHH
Confidence            9776 8889999999988774

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.82  E-value=0.015  Score=62.71  Aligned_cols=333  Identities=15%  Similarity=0.157  Sum_probs=189.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc----C--Ch
Q 010080           95 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL----P--AL  168 (518)
Q Consensus        95 ~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~----~--~v  168 (518)
                      |...--.|+..+.-+....  |..-.-+..-+++.++.+++++-   +|-.|..++.++-       .+++    .  ..
T Consensus       706 dlhvt~~a~~~L~tl~~~~--ps~l~~~~~~iL~~ii~ll~Spl---lqg~al~~~l~~f-------~alV~t~~~~l~y  773 (1233)
T KOG1824|consen  706 DLHVTQLAVAFLTTLAIIQ--PSSLLKISNPILDEIIRLLRSPL---LQGGALSALLLFF-------QALVITKEPDLDY  773 (1233)
T ss_pred             HHHHHHHHHHHHHHHHhcc--cHHHHHHhhhhHHHHHHHhhCcc---ccchHHHHHHHHH-------HHHHhcCCCCccH
Confidence            3333345555555544332  33323345668889999998643   3433444433322       1111    1  14


Q ss_pred             HHHHHhhcCCC----CHHHHHHHHHHHHhhhC----CChhhHHHHHhcCChhHHHhhhCC--CChhHHHHHHHHHHHhhc
Q 010080          169 PLLIAHLGEKS----SSPVAEQCAWALGNVAG----EGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIK  238 (518)
Q Consensus       169 ~~Lv~lL~~~~----~~~v~~~a~~~L~nla~----d~~~~r~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~  238 (518)
                      ..++.++..+-    ...+-.+|.+.++.++.    -.++-     .......|+.-+.+  .+..++.-|+.+|..+-+
T Consensus       774 ~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr  848 (1233)
T KOG1824|consen  774 ISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGR  848 (1233)
T ss_pred             HHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhcc
Confidence            45666665521    11234444444443321    11100     01122334433333  356778888889999988


Q ss_pred             CCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCC-chhhhHHHh------------------------
Q 010080          239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS-NVATSLLVK------------------------  293 (518)
Q Consensus       239 ~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~~~~------------------------  293 (518)
                      ++...+.      .++-..+..-++++++++...|..||+.++.|+ +.+...+.+                        
T Consensus       849 ~~~~s~~------~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~s  922 (1233)
T KOG1824|consen  849 RKDLSPQ------NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSAS  922 (1233)
T ss_pred             CCCCCcc------hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhc
Confidence            8655443      345557888999999999999999999999854 333333321                        


Q ss_pred             ----cCchHHHHHHHccC---CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHH
Q 010080          294 ----SGVLQLLVERLATS---NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW  366 (518)
Q Consensus       294 ----~g~~~~Lv~lL~~~---~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~  366 (518)
                          ...++.+..+|.++   ...-.+.-+.-|||.++..++              ..++|.|-..+.++.+..|..+..
T Consensus       923 vd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--------------esLlpkL~~~~~S~a~~~rs~vvs  988 (1233)
T KOG1824|consen  923 VDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--------------ESLLPKLKLLLRSEASNTRSSVVS  988 (1233)
T ss_pred             cchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--------------HHHHHHHHHHhcCCCcchhhhhhh
Confidence                11122333333211   122234555667777765553              358999999999999988888777


Q ss_pred             HHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH----Hhc-CchH
Q 010080          367 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL----VGR-GCLS  441 (518)
Q Consensus       367 ~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l----~~~-g~i~  441 (518)
                      ++-......+.-+..++.. .+...+.+++++|.+||++|+-++...+.+      +|..|.+-...+    .+. .+=+
T Consensus       989 avKfsisd~p~~id~~lk~-~ig~fl~~~~dpDl~VrrvaLvv~nSaahN------KpslIrDllpeLLp~Ly~eTkvrk 1061 (1233)
T KOG1824|consen  989 AVKFSISDQPQPIDPLLKQ-QIGDFLKLLRDPDLEVRRVALVVLNSAAHN------KPSLIRDLLPELLPLLYSETKVRK 1061 (1233)
T ss_pred             eeeeeecCCCCccCHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHcc------CHhHHHHHHHHHHHHHHHhhhhhH
Confidence            7766665555555555443 567788899999999999999999988764      454443222221    111 1111


Q ss_pred             HHHHhhcc--------CCHHHHHHHHHHHHHHHccCCC
Q 010080          442 GFIDLVRS--------ADIEAARLGLQFMELVLRGMPN  471 (518)
Q Consensus       442 ~L~~lL~~--------~d~~~~~~~l~~l~~il~~~~~  471 (518)
                      .++.-.+.        ..-++.+.+-++++.+++.+.+
T Consensus      1062 elIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld 1099 (1233)
T KOG1824|consen 1062 ELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLD 1099 (1233)
T ss_pred             hhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhh
Confidence            12222221        1235677888889999887654

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.81  E-value=0.0024  Score=68.50  Aligned_cols=385  Identities=19%  Similarity=0.218  Sum_probs=199.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH-HHhc-CChHHH
Q 010080           94 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET-KALL-PALPLL  171 (518)
Q Consensus        94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~-~~v~-~~v~~L  171 (518)
                      .|.+.+..|+.++-.+++... ...... -..++|.|++-|+.+   .-..-|+.+++.|+...-.-. ..+. .++|.+
T Consensus       582 ~DqeVkeraIscmgq~i~~fg-D~l~~e-L~~~L~il~eRl~nE---iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l  656 (1233)
T KOG1824|consen  582 SDQEVKERAISCMGQIIANFG-DFLGNE-LPRTLPILLERLGNE---ITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL  656 (1233)
T ss_pred             ccHHHHHHHHHHHHHHHHHHh-hhhhhh-hHHHHHHHHHHHhch---hHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence            356666666666666655432 111001 134566677766632   223569999999995433222 2333 488888


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhhCCCh-hhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 010080          172 IAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK  250 (518)
Q Consensus       172 v~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~  250 (518)
                      ..++.. ....++..+.-++-.+..... ......++ -++.-+..++..++..+..++.-+|..+....   ++...-.
T Consensus       657 ~~flrK-~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~---ps~l~~~  731 (1233)
T KOG1824|consen  657 ASFLRK-NQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQ---PSSLLKI  731 (1233)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc---cHHHHHH
Confidence            888876 445566666666555543111 11111111 13344555666667788888888888888763   2221222


Q ss_pred             hhchHHHHHHHhccCChh--HHHH--------------------------------------------HHHHHHHhhcCC
Q 010080          251 VDGLLDAILRHLKRADEE--LTTE--------------------------------------------VAWVVVYLSALS  284 (518)
Q Consensus       251 ~~~~l~~L~~lL~~~d~~--v~~~--------------------------------------------a~~~L~~L~~~~  284 (518)
                      ...+++.++.+++++--.  ....                                            .+.|.+-|+...
T Consensus       732 ~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~  811 (1233)
T KOG1824|consen  732 SNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCAC  811 (1233)
T ss_pred             hhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhc
Confidence            356788888877654210  0000                                            111111111100


Q ss_pred             chhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHH
Q 010080          285 NVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE  363 (518)
Q Consensus       285 ~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~  363 (518)
                      ++.     .......|+.-+.+ ..+..++.-|+-.+|.+-.+.+..-          ..++...++..+++++..++..
T Consensus       812 ~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----------~~e~~~~iieaf~sp~edvksA  876 (1233)
T KOG1824|consen  812 PQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----------QNELKDTIIEAFNSPSEDVKSA  876 (1233)
T ss_pred             ccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----------chhhHHHHHHHcCCChHHHHHH
Confidence            000     00112223322221 2234455667777777765554322          1346667888999999999999


Q ss_pred             HHHHHHHhccCCHH-HHHHHHh---C------CCHHHHHHHhcCCChhHHHHHHHHHHHh----cCCCCCCCCCchhHHH
Q 010080          364 AAWVLSNIAAGSVE-HKQLIHS---S------EALALLLHLLSTSPFDIKKEVAYVLGNL----CVSPTEGEGKPKLIQE  429 (518)
Q Consensus       364 a~~~Lsnl~~~~~~-~~~~li~---~------~~i~~Li~lL~~~~~~v~~eA~~aL~nl----~~~~~~~~~~~~~~~~  429 (518)
                      |.++||+++.|+-+ +...+.+   .      =++-.|-+.+...+.+..+.++.-|+-+    |.+.++  |+-+-+.|
T Consensus       877 As~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~ee--gtR~vvAE  954 (1233)
T KOG1824|consen  877 ASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEE--GTRNVVAE  954 (1233)
T ss_pred             HHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchh--hhHHHHHH
Confidence            99999999998633 3222221   1      1233445555444444444443333222    222211  22111123


Q ss_pred             HHHHHHh---cCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHH
Q 010080          430 HLVSLVG---RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLV  506 (518)
Q Consensus       430 ~~~~l~~---~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il  506 (518)
                      .+..|+-   ...+|.|-..+.++++.+...++.++...+...+. +-...+...  +.....+..+++.++++-|...+
T Consensus       955 CLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~-~id~~lk~~--ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen  955 CLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQ-PIDPLLKQQ--IGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred             HhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCC-ccCHHHHHH--HHHHHHHHhCCchhHHHHHHHHH
Confidence            3333331   24677787888888887777777766655432221 111112221  23344456788888888776655


Q ss_pred             Hh
Q 010080          507 DK  508 (518)
Q Consensus       507 ~~  508 (518)
                      ..
T Consensus      1032 nS 1033 (1233)
T KOG1824|consen 1032 NS 1033 (1233)
T ss_pred             HH
Confidence            54

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0039  Score=65.41  Aligned_cols=150  Identities=16%  Similarity=0.178  Sum_probs=87.8

Q ss_pred             hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 010080          344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG  422 (518)
Q Consensus       344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~  422 (518)
                      |.+--++.+|++++-.+++.+.-..-.|+.. +-+.+-.++...+...--. =+...-+.|..-..+|..++..-     
T Consensus       317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~F-----  390 (948)
T KOG1058|consen  317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKF-----  390 (948)
T ss_pred             HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcC-----
Confidence            4555566778888888888887766666543 3232222211110000000 00112235666666776665531     


Q ss_pred             CchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHH
Q 010080          423 KPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA  502 (518)
Q Consensus       423 ~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a  502 (518)
                       |    +     +...+++.|++++.+.++..-..+|.++.-.++..++-. ...++.     .++.+-.-.+..+++-|
T Consensus       391 -p----~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-~~ii~~-----l~~~~~~irS~ki~rga  454 (948)
T KOG1058|consen  391 -P----E-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-ASIIEK-----LLETFPQIRSSKICRGA  454 (948)
T ss_pred             -h----H-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-HHHHHH-----HHHhhhhhcccccchhH
Confidence             1    1     234578999999999999888888888888877655410 111211     13334444677899999


Q ss_pred             HHHHHhhcCccCC
Q 010080          503 NGLVDKYFGEDYG  515 (518)
Q Consensus       503 ~~il~~~f~~~~~  515 (518)
                      .+|+-.|...+.+
T Consensus       455 lwi~GeYce~~~~  467 (948)
T KOG1058|consen  455 LWILGEYCEGLSE  467 (948)
T ss_pred             HHHHHHHHhhhHH
Confidence            9999999876653

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=0.003  Score=64.17  Aligned_cols=270  Identities=18%  Similarity=0.181  Sum_probs=162.3

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC---ChhhH
Q 010080          126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE---GEEFR  202 (518)
Q Consensus       126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d---~~~~r  202 (518)
                      .||.|-+-+...++..-++-.-|.=.--+...-+-...+-..++.|..+|+. ++.+|+..+-.+|+++-.+   +|.. 
T Consensus       168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD-~s~eVr~~~~t~l~~fL~eI~s~P~s-  245 (675)
T KOG0212|consen  168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD-SSDEVRTLTDTLLSEFLAEIRSSPSS-  245 (675)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHhcCccc-
Confidence            3444444443334444455566654433332222222222477888889987 7889998888777765431   2211 


Q ss_pred             HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChh-HHHHH---HHHHH
Q 010080          203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEE-LTTEV---AWVVV  278 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~-v~~~a---~~~L~  278 (518)
                        +--...++.++..++++++.++..|..-+..+..-..+..   +...++++..++.++.++++. +...+   -..+.
T Consensus       246 --~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~---l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~  320 (675)
T KOG0212|consen  246 --MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL---LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL  320 (675)
T ss_pred             --cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch---hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence              1123467888888899999888766555555554321111   223467777788887766653 22222   11233


Q ss_pred             HhhcCCchhhhHHHhcC-chHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh
Q 010080          279 YLSALSNVATSLLVKSG-VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH  357 (518)
Q Consensus       279 ~L~~~~~~~~~~~~~~g-~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~  357 (518)
                      .+... ....+. ++-| ++..+...| .++..+.+..++.-+.-+-...+.+.-...       +.+.+.|..-|+..+
T Consensus       321 ~l~s~-~~~~~~-id~~~ii~vl~~~l-~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-------~~if~tLL~tLsd~s  390 (675)
T KOG0212|consen  321 KLVSS-ERLKEE-IDYGSIIEVLTKYL-SDDREETRIAVLNWIILLYHKAPGQLLVHN-------DSIFLTLLKTLSDRS  390 (675)
T ss_pred             HHHhh-hhhccc-cchHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHhhCcchhhhhc-------cHHHHHHHHhhcCch
Confidence            33321 111111 3433 456666777 477888888888888777766666654443       368899999999998


Q ss_pred             hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          358 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       358 ~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      ..+...+...+++|+......  ..  ..++..|+++......-+...+...+..+|.-
T Consensus       391 d~vvl~~L~lla~i~~s~~~~--~~--~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  391 DEVVLLALSLLASICSSSNSP--NL--RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             hHHHHHHHHHHHHHhcCcccc--cH--HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            899999999999998764221  01  12344566666666666777788888877764

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.78  E-value=4.9e-05  Score=53.82  Aligned_cols=53  Identities=38%  Similarity=0.581  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhh
Q 010080          141 EQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNV  194 (518)
Q Consensus       141 ~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nl  194 (518)
                      .++..|+|+|++++...++...... ..+|.|+.+|.+ +++.|+..|+|+||+|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence            3456799999999988888777777 699999999987 6789999999999986

...

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.76  E-value=7.3e-05  Score=49.15  Aligned_cols=38  Identities=34%  Similarity=0.495  Sum_probs=35.4

Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                      ++.+.+++.|++|.|+++|++++.++++.|+|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            46778899999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.0078  Score=57.30  Aligned_cols=322  Identities=15%  Similarity=0.135  Sum_probs=191.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH-HhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQ-CLAFGSPDEQLLEAAWCLTNIAAGKQEETK  162 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~-~L~~~~~~~~~~eA~~~L~nia~~~~~~~~  162 (518)
                      ++.++..+...|.+.--.|...+.+ ++..+ .....+.++.....+-- -|....++.........+..|.+-+++...
T Consensus       130 lklildcIggeddeVAkAAiesikr-ialfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan  207 (524)
T KOG4413|consen  130 LKLILDCIGGEDDEVAKAAIESIKR-IALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN  207 (524)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHH-HHhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence            4455556667777787788888887 45443 22334445554433221 111112233334467778888888888777


Q ss_pred             Hhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC--h-hHHHHH---HHHHH
Q 010080          163 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK--G-STVRTA---AWALS  234 (518)
Q Consensus       163 ~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~--~-~~~~~a---~~~L~  234 (518)
                      .+-  |.+..|..-|....+.-|+-.|+.....++. ...-|+++-+.|.|..+.+++...+  + +-.+..   ...++
T Consensus       208 eckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg  286 (524)
T KOG4413|consen  208 ECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG  286 (524)
T ss_pred             HhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence            776  7888888888776777888899988888886 5677889999999999999997432  2 112222   22233


Q ss_pred             HhhcCCCCCchhhHHHh--hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCc--hHHHHHHHccCCCc
Q 010080          235 NLIKGPDPKPATELIKV--DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV--LQLLVERLATSNSL  310 (518)
Q Consensus       235 nL~~~~~~~~~~~~i~~--~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~--~~~Lv~lL~~~~~~  310 (518)
                      +..-.+.   ..+.+..  .-++..-..++...|++....+.-+++.|.. +.+..+.+...|-  ...++....+.+..
T Consensus       287 keaimdv---seeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlllkTgppaaehllarafdqnah  362 (524)
T KOG4413|consen  287 KEAIMDV---SEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLLKTGPPAAEHLLARAFDQNAH  362 (524)
T ss_pred             chHHhhc---CHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHhccCChHHHHHHHHHhccccc
Confidence            3332221   1111110  1233444566778899888888888888876 4456677777663  33444333223333


Q ss_pred             cchhhhhhhhhhhhcCC---Cc-ccc---------eeeccCC-CchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080          311 QLLIPVLRSLGNLVAGD---SS-TIS---------DVLVPGH-GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV  376 (518)
Q Consensus       311 ~v~~~al~~L~nl~~~~---~~-~~~---------~~i~~G~-~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~  376 (518)
                      .-+..++++|.+|+...   ++ +++         .+.++-. .....-+..+..+++.+.+.++-.+..++..|++...
T Consensus       363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPW  442 (524)
T KOG4413|consen  363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPW  442 (524)
T ss_pred             chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcH
Confidence            34567888888887442   22 111         0000000 0011234556777888888999999999999988765


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCC---ChhHHHHHHHHHHH
Q 010080          377 EHKQLIHSSEALALLLHLLSTS---PFDIKKEVAYVLGN  412 (518)
Q Consensus       377 ~~~~~li~~~~i~~Li~lL~~~---~~~v~~eA~~aL~n  412 (518)
                      .+...+-..+++....+.-...   ..+.+.+++.+|.+
T Consensus       443 alkeifakeefieiVtDastEhaKaakdAkYeccKAiae  481 (524)
T KOG4413|consen  443 ALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE  481 (524)
T ss_pred             HHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence            5554454556666655543221   23455556666554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.74  E-value=0.00069  Score=55.97  Aligned_cols=113  Identities=20%  Similarity=0.102  Sum_probs=88.5

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhh
Q 010080          124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF  201 (518)
Q Consensus       124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~  201 (518)
                      .+.+..||.-.+...+.+-+....--|.|+|-+.... ..+.  +.+..|+.-|.. ++..+.+.++..|+|+|. .+.+
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Ny-s~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~-d~~n   91 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINY-SHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCL-DKTN   91 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchH-HHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhcc-ChHH
Confidence            3445556655554444444444666677777665433 3333  689999999987 799999999999999999 4688


Q ss_pred             HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080          202 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       202 r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~  239 (518)
                      ...+.+.+++|.++..+.++...+.-.++.++..||.+
T Consensus        92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~  129 (173)
T KOG4646|consen   92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFG  129 (173)
T ss_pred             HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCc
Confidence            89999999999999999999999999999999999976

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.73  E-value=0.00073  Score=72.98  Aligned_cols=238  Identities=16%  Similarity=0.168  Sum_probs=165.7

Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  247 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  247 (518)
                      +|..++.|-+   .--+-.|+..|+..---++=..+..+.-|+.|..++||+++..+++...+..-..+..-+ +....+
T Consensus       474 LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~d  549 (1387)
T KOG1517|consen  474 LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQAD  549 (1387)
T ss_pred             cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHH
Confidence            5555555543   234566777788776666777788889999999999999987777665554444443222 334455


Q ss_pred             HHHhhchHHHHHHHhcc-C--ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080          248 LIKVDGLLDAILRHLKR-A--DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       248 ~i~~~~~l~~L~~lL~~-~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~  324 (518)
                      ++. .++-.++++.|.. .  ++|-+..++.+|+-++++..-..+...+.+++....+.|.+.+.+-.+.=++-+||.+=
T Consensus       550 LvK-e~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  550 LVK-ENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHh-ccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            554 3444555566654 2  35889999999999999877667777788888888888842223344455777888887


Q ss_pred             cCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC----CHHHHHHH------------HhCCCH
Q 010080          325 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG----SVEHKQLI------------HSSEAL  388 (518)
Q Consensus       325 ~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~----~~~~~~~l------------i~~~~i  388 (518)
                      ...+...-.-+      ..++...|..+|..+-+.||..|.++|+.+..+    .+++...+            ++..+.
T Consensus       629 ~d~~~Arw~G~------r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~  702 (1387)
T KOG1517|consen  629 EDYDEARWSGR------RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII  702 (1387)
T ss_pred             hhcchhhhccc------cccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence            66554332222      246889999999999999999999999999875    33433322            232222


Q ss_pred             ---HHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          389 ---ALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       389 ---~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                         -.++.+++.+.+-+++|.+-+|+.+..+
T Consensus       703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g  733 (1387)
T KOG1517|consen  703 KGLMSLLALVSDGSPLVRTEVVVALSHFVVG  733 (1387)
T ss_pred             hhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence               2677788999999999999999998764

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.0059  Score=63.05  Aligned_cols=270  Identities=13%  Similarity=0.051  Sum_probs=170.6

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      ...|.+-+.|++..+..+++..+-.-|-++..-..  ....-..++..++.-+..+...+++..+.||.-+.......  
T Consensus        55 ~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~--~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~--  130 (569)
T KOG1242|consen   55 NLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQI--VDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL--  130 (569)
T ss_pred             HHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccc--cCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc--
Confidence            45777778887766677777776666666653221  11122234666677777778899999998888766432211  


Q ss_pred             hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhh-hhhhh
Q 010080          246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS-LGNLV  324 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~-L~nl~  324 (518)
                          ....+.+.+.+++..++..-+..+.|.+..+..+.  .++.+.+.+++..+...+.+-.+..-+..++.+ ..+..
T Consensus       131 ----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~  204 (569)
T KOG1242|consen  131 ----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG  204 (569)
T ss_pred             ----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH
Confidence                13467788899999888888999999999999754  356666778888888877533333333212211 11111


Q ss_pred             cCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHH-HHHHHhCCCHHHHHHHhcCCChhHH
Q 010080          325 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH-KQLIHSSEALALLLHLLSTSPFDIK  403 (518)
Q Consensus       325 ~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~-~~~li~~~~i~~Li~lL~~~~~~v~  403 (518)
                      .-.....-.++        .++|.++.-+.+..+.+|..|..+.-.+...-+.+ .+     -++|.++.-+.....+.+
T Consensus       205 ~Lg~~~EPyiv--------~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-----~llpsll~~l~~~kWrtK  271 (569)
T KOG1242|consen  205 NLGPPFEPYIV--------PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-----LLLPSLLGSLLEAKWRTK  271 (569)
T ss_pred             hcCCCCCchHH--------hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-----HhhhhhHHHHHHHhhhhH
Confidence            11111111121        14444444445556788877777766555432221 11     156666666655577888


Q ss_pred             HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       404 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      ..++..++.++...      |    .|. ...-..++|.+.+.|.+..+++...+.+++..+....
T Consensus       272 ~aslellg~m~~~a------p----~qL-s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi  326 (569)
T KOG1242|consen  272 MASLELLGAMADCA------P----KQL-SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI  326 (569)
T ss_pred             HHHHHHHHHHHHhc------h----HHH-HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence            99999999887642      2    232 3345679999999999999999999988888776543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.71  E-value=0.001  Score=72.95  Aligned_cols=268  Identities=18%  Similarity=0.139  Sum_probs=165.2

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC---Ch
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG---KQ  158 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~---~~  158 (518)
                      .-+-+.|+.++.  .+.++.|+..|+. ++..-.   ++..=..++|.++.++... ...++..|+..|+.+-..   -+
T Consensus       425 s~lts~IR~lk~--~~tK~~ALeLl~~-lS~~i~---de~~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~  497 (1431)
T KOG1240|consen  425 SVLTSCIRALKT--IQTKLAALELLQE-LSTYID---DEVKLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIP  497 (1431)
T ss_pred             HHHHHHHHhhhc--chhHHHHHHHHHH-Hhhhcc---hHHHHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCC
Confidence            344555555553  5778999999888 454322   2233367999999999753 355667788888877632   11


Q ss_pred             HHHHHhc-C-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH---HHHHhc-------------------------
Q 010080          159 EETKALL-P-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR---NVLLSQ-------------------------  208 (518)
Q Consensus       159 ~~~~~v~-~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r---~~~~~~-------------------------  208 (518)
                      ..-..++ + .+|.|-.++.++...-++-.-+.+|+.+|.---.+-   ..+-..                         
T Consensus       498 ~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~  577 (1431)
T KOG1240|consen  498 PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH  577 (1431)
T ss_pred             cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence            1111222 3 788888888764455566666666666654110000   011111                         


Q ss_pred             CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080          209 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT  288 (518)
Q Consensus       209 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~  288 (518)
                      ++=.....|+..+++-+++..+-.|.-||........     ..-+++.|..+|++.|..++....-.+..++-.    .
T Consensus       578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~----V  648 (1431)
T KOG1240|consen  578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF----V  648 (1431)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCccHHHHHHHHhhccceEEE----E
Confidence            1111222344444455666666666666643221111     123567788888888877777766666665531    1


Q ss_pred             hHH-HhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHH
Q 010080          289 SLL-VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV  367 (518)
Q Consensus       289 ~~~-~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~  367 (518)
                      ... ++.+++|.|..-| .+..+.|+..||.++.-++...--....++        .++.....+|-|++.-||..+|..
T Consensus       649 G~rs~seyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--------~i~~~v~PlL~hPN~WIR~~~~~i  719 (1431)
T KOG1240|consen  649 GWRSVSEYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLGLLRKPAVK--------DILQDVLPLLCHPNLWIRRAVLGI  719 (1431)
T ss_pred             eeeeHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcccchHHHH--------HHHHhhhhheeCchHHHHHHHHHH
Confidence            111 3556788888888 477788999999999999866544555555        377888889999999999999999


Q ss_pred             HHHhccC
Q 010080          368 LSNIAAG  374 (518)
Q Consensus       368 Lsnl~~~  374 (518)
                      |..++..
T Consensus       720 I~~~~~~  726 (1431)
T KOG1240|consen  720 IAAIARQ  726 (1431)
T ss_pred             HHHHHhh
Confidence            8877653

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.69  E-value=0.0009  Score=62.89  Aligned_cols=184  Identities=17%  Similarity=0.147  Sum_probs=112.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCC-CCCcHHHHHH--cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CC
Q 010080           92 GKGAMQKRVNALRELRRLLSRF-EFPPIETALK--AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PA  167 (518)
Q Consensus        92 ~s~~~~~~~~a~~~lr~lls~~-~~~~~~~~i~--~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~  167 (518)
                      .+.|=+.+.+|+..|+.++... .......+++  ..+++.++..+.+.. ..+...|+.++..++..-....+..+ ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            4678889999999999988766 1122223322  255566666665433 34557799999999865444444455 48


Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC-CCchh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD-PKPAT  246 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~-~~~~~  246 (518)
                      +|.|+..+.+ ++.-+++.|..+|..++...+.... ++    ++.+...+.+.++.++..++-.+..+..... +....
T Consensus        96 l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~-~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPK-IL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--H-HH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHH-HH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            9999999988 6788999999999999985541111 11    4555666778889999888888888775432 11111


Q ss_pred             h-HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          247 E-LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       247 ~-~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      . ......+++.+.+++.+.+++|+..+-.++..+..
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            1 10124688889999999999999887777766654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.057  Score=51.62  Aligned_cols=351  Identities=15%  Similarity=0.116  Sum_probs=208.4

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCc---HHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPP---IETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP  166 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~---~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~  166 (518)
                      ++..+|...+.-++..+-.++.......   +..++..|++|.++.++...+ .++-..|...+..|+.. +....+++.
T Consensus        90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paaleaiFe  167 (524)
T KOG4413|consen   90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAALEAIFE  167 (524)
T ss_pred             cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHHHHHhcc
Confidence            5567777888888888888777654333   345568999999999997554 44545577777777743 344555552


Q ss_pred             --ChH--HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCC
Q 010080          167 --ALP--LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       167 --~v~--~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~  241 (518)
                        ...  .+..+-.. -+.-++......+-.|..-+++....+-..|.+..|..-|+. .+.-+..++.-....|+....
T Consensus       168 SellDdlhlrnlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH  246 (524)
T KOG4413|consen  168 SELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH  246 (524)
T ss_pred             cccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence              222  22233233 344566667777778887789999999999999999988886 577777888888888886532


Q ss_pred             CCchhhHHHhhchHHHHHHHhccC--ChhHHHHHHHHHHHhhcCCchhhhHHHhcCch-------HHHHHHHccCCCccc
Q 010080          242 PKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSNVATSLLVKSGVL-------QLLVERLATSNSLQL  312 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~-------~~Lv~lL~~~~~~~v  312 (518)
                         .++++...|.+..+.+++.-.  ||--...++-....+..  .+.+-.+.+...+       ....+.+ ..+++..
T Consensus       247 ---greflaQeglIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicealiiaidgsfEmi-EmnDpda  320 (524)
T KOG4413|consen  247 ---GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEALIIAIDGSFEMI-EMNDPDA  320 (524)
T ss_pred             ---hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHHHHHHHHhhHHhh-hcCCchH
Confidence               245666789999999999743  33222223333222221  1111111111222       2233333 3667888


Q ss_pred             hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC---CHHHHH---------
Q 010080          313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---SVEHKQ---------  380 (518)
Q Consensus       313 ~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~---~~~~~~---------  380 (518)
                      +..|+-++|-+-+.. +..+.+...|.   ..+=..+......+...-+..+..+|.||+..   .++++.         
T Consensus       321 ieaAiDalGilGSnt-eGadlllkTgp---paaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlr  396 (524)
T KOG4413|consen  321 IEAAIDALGILGSNT-EGADLLLKTGP---PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLR  396 (524)
T ss_pred             HHHHHHHHHhccCCc-chhHHHhccCC---hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHH
Confidence            888888888775443 34455555441   11222333333333445566778888888753   233321         


Q ss_pred             H-HHhC-------CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCH
Q 010080          381 L-IHSS-------EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADI  452 (518)
Q Consensus       381 ~-li~~-------~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~  452 (518)
                      . +.++       .-+..+..+++.+.++++..|..++..++..+          -.+...+.+.|+|    ++..+...
T Consensus       397 clifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqP----------Walkeifakeefi----eiVtDast  462 (524)
T KOG4413|consen  397 CLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP----------WALKEIFAKEEFI----EIVTDAST  462 (524)
T ss_pred             HHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc----------HHHHHHhcCccce----eeecccch
Confidence            1 1111       22444566677788899999999999988753          1222233344544    44444555


Q ss_pred             HHHHHHHHHHHHHHc
Q 010080          453 EAARLGLQFMELVLR  467 (518)
Q Consensus       453 ~~~~~~l~~l~~il~  467 (518)
                      +.-+.+.++=++.++
T Consensus       463 EhaKaakdAkYeccK  477 (524)
T KOG4413|consen  463 EHAKAAKDAKYECCK  477 (524)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            555555555555443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.65  E-value=0.0001  Score=48.49  Aligned_cols=39  Identities=36%  Similarity=0.653  Sum_probs=36.0

Q ss_pred             hhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080          200 EFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK  238 (518)
Q Consensus       200 ~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  238 (518)
                      +.+..+.+.|++++|+.++.+++..+++.++|+|+||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            477889999999999999998899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.64  E-value=0.0035  Score=59.38  Aligned_cols=227  Identities=14%  Similarity=0.085  Sum_probs=147.8

Q ss_pred             CHHHHHHHHHHHHhhhCCChhhHHHHHhcC-ChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchH
Q 010080          180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQG-ALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLL  255 (518)
Q Consensus       180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g-~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i~-~~~~l  255 (518)
                      ++-.+.-|+.|+.++.. .++.|+.....+ .-..++.++++.  ...++-+...+++.|...+   .+.+.+. .-..+
T Consensus       162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~---~~aqdi~K~~dli  237 (432)
T COG5231         162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK---ECAQDIDKMDDLI  237 (432)
T ss_pred             HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH---HHHHHHHHHHHHH
Confidence            45578889999999998 568888776554 334566666653  5788999999999988653   2222221 12455


Q ss_pred             HHHHHHhccC-ChhHHHHHHHHHHHhhc-CCchhhhHHHhcCchHHHHHHHcc--CCCccchhhhhhhhhhhhcCC----
Q 010080          256 DAILRHLKRA-DEELTTEVAWVVVYLSA-LSNVATSLLVKSGVLQLLVERLAT--SNSLQLLIPVLRSLGNLVAGD----  327 (518)
Q Consensus       256 ~~L~~lL~~~-d~~v~~~a~~~L~~L~~-~~~~~~~~~~~~g~~~~Lv~lL~~--~~~~~v~~~al~~L~nl~~~~----  327 (518)
                      .-+++++... .+.|..-+|..+.++++ .+...+..+.-.|-+.+.++.|..  ..+.+++...=++=..+....    
T Consensus       238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~  317 (432)
T COG5231         238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC  317 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence            5566666543 45788889999999998 344555555545545555665542  223333322111111111000    


Q ss_pred             -----------------Cc---------ccceeeccCCCchhhhHHHHHHHhccChhh-hHHHHHHHHHHhccCCHHHHH
Q 010080          328 -----------------SS---------TISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNIAAGSVEHKQ  380 (518)
Q Consensus       328 -----------------~~---------~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~-i~~~a~~~Lsnl~~~~~~~~~  380 (518)
                                       +.         ..+.++..    +-.++..|..++++..+. ...-||.-|..+....|+-+.
T Consensus       318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd----ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~  393 (432)
T COG5231         318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD----NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA  393 (432)
T ss_pred             HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh----hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence                             00         01111110    235677888889887765 556688888888888999988


Q ss_pred             HHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          381 LIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       381 ~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                      .+...|+=..+++++.++|++|+-||..|+--+.
T Consensus       394 vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         394 VLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            8889999999999999999999999999886653

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.61  E-value=0.011  Score=60.82  Aligned_cols=318  Identities=18%  Similarity=0.199  Sum_probs=174.4

Q ss_pred             HHHHHHHhcCCCCh--HHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH-
Q 010080          127 IPVLVQCLAFGSPD--EQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR-  202 (518)
Q Consensus       127 ip~Lv~~L~~~~~~--~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r-  202 (518)
                      +|.|+..|..+++.  ......+.+|..+|.... ..+.++ ..+..+-....+..+.+....++.+|.++........ 
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~   79 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ   79 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence            47788888754432  232348888999986543 223332 3444555555443456677777777777754332222 


Q ss_pred             ----HHHHhcCChhHHHhhhCC-----C--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--------
Q 010080          203 ----NVLLSQGALPPLARMMLP-----N--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--------  263 (518)
Q Consensus       203 ----~~~~~~g~i~~L~~ll~~-----~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~--------  263 (518)
                          ....+..++|.+..+...     .  +..+...+...+..+++.-++..      ....+..+..++.        
T Consensus        80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~------q~~~~~~~~~lf~~~~~~~~~  153 (415)
T PF12460_consen   80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEK------QQEILDELYSLFLSPKSFSPF  153 (415)
T ss_pred             cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHccccccCCC
Confidence                223344477777776532     1  24566666666666665532211      1223333333332        


Q ss_pred             --c------CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC--CCccc--
Q 010080          264 --R------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG--DSSTI--  331 (518)
Q Consensus       264 --~------~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~--~~~~~--  331 (518)
                        .      .......-...+++.+-...  ...  -...++..++.+..+..++..+..++++++-++--  +++..  
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~--~~~--~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~  229 (415)
T PF12460_consen  154 QPSSSTISEQQSRLVILFSAILCSLRKDV--SLP--DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE  229 (415)
T ss_pred             CccccccccccccHHHHHHHHHHcCCccc--Ccc--CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH
Confidence              0      01112222222333222211  011  01124455555544444455555566655555422  11100  


Q ss_pred             -----------------------------ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHH----
Q 010080          332 -----------------------------SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH----  378 (518)
Q Consensus       332 -----------------------------~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~----  378 (518)
                                                   ...+--|+......+..|+.++.+  +.+...|+..++-|....+..    
T Consensus       230 ~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~  307 (415)
T PF12460_consen  230 FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKE  307 (415)
T ss_pred             HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcc
Confidence                                         001111222223456677777766  567788888888887763332    


Q ss_pred             ---------HHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhcc
Q 010080          379 ---------KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS  449 (518)
Q Consensus       379 ---------~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~  449 (518)
                               .|.+... ++|.|++-.+..+...|.....||+++..+      .|.++  ....+  ..++|.|++-|..
T Consensus       308 ~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~------vP~~v--l~~~l--~~LlPLLlqsL~~  376 (415)
T PF12460_consen  308 NHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNYLTALSHLLKN------VPKSV--LLPEL--PTLLPLLLQSLSL  376 (415)
T ss_pred             ccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHHHHHHHHHHhh------CCHHH--HHHHH--HHHHHHHHHHhCC
Confidence                     3444443 789999998887777888899999999874      34222  11111  2479999999999


Q ss_pred             CCHHHHHHHHHHHHHHHcc
Q 010080          450 ADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       450 ~d~~~~~~~l~~l~~il~~  468 (518)
                      +|+++...+|+.|..++..
T Consensus       377 ~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  377 PDADVLLSSLETLKMILEE  395 (415)
T ss_pred             CCHHHHHHHHHHHHHHHHc
Confidence            9999999999999999864

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.58  E-value=0.0025  Score=70.02  Aligned_cols=298  Identities=16%  Similarity=0.094  Sum_probs=176.8

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhC---CChhh
Q 010080          126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAG---EGEEF  201 (518)
Q Consensus       126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~---d~~~~  201 (518)
                      +++.+...++.-.......+|+..|..++.-..+  +..+ -.+|.++.++.. +..+||..|+.+|..+-.   +-+..
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcc
Confidence            4666666666433344567888888888843321  1223 379999999988 789999999998887753   22333


Q ss_pred             HHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080          202 RNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  280 (518)
Q Consensus       202 r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  280 (518)
                      -..+...-++|-|-.++.+ ....++...+.+|..|+..-     ..+. ..+.-.....+++..+.+..         -
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA-----~rFl-e~~q~~~~~g~~n~~nset~---------~  564 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA-----YRFL-ELTQELRQAGMLNDPNSETA---------P  564 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH-----HHHH-HHHHHHHhcccccCcccccc---------c
Confidence            3344555567888888876 45566667777777777421     1111 11111111223343333300         0


Q ss_pred             hcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC-cccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080          281 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCLKSEHRV  359 (518)
Q Consensus       281 ~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~  359 (518)
                      -...+...+.+. .++-+..+.+|. .+++-|+...+..|+-+|..-. .+..          .-+++.|+.+|+..++.
T Consensus       565 ~~~~~~~~~~L~-~~V~~~v~sLls-d~~~~Vkr~Lle~i~~LC~FFGk~ksN----------D~iLshLiTfLNDkDw~  632 (1431)
T KOG1240|consen  565 EQNYNTELQALH-HTVEQMVSSLLS-DSPPIVKRALLESIIPLCVFFGKEKSN----------DVILSHLITFLNDKDWR  632 (1431)
T ss_pred             ccccchHHHHHH-HHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhhhcccc----------cchHHHHHHHhcCccHH
Confidence            001122233332 233344455553 4445566666666776663321 1111          23789999999999988


Q ss_pred             hHHHHHHHHHHhcc--CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 010080          360 LKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR  437 (518)
Q Consensus       360 i~~~a~~~Lsnl~~--~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~  437 (518)
                      +|-.-.-.|.-++.  |..     =++..++|.|.+-|.++++-|...|+.+|.-++..            ..+++..-.
T Consensus       633 LR~aFfdsI~gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~------------~ll~K~~v~  695 (1431)
T KOG1240|consen  633 LRGAFFDSIVGVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL------------GLLRKPAVK  695 (1431)
T ss_pred             HHHHHHhhccceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh------------cccchHHHH
Confidence            87654444443332  221     12445899999999999999999999999999863            123333333


Q ss_pred             CchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080          438 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       438 g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~  470 (518)
                      ..++-..-+|..++.=+...++..|..+.+...
T Consensus       696 ~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls  728 (1431)
T KOG1240|consen  696 DILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS  728 (1431)
T ss_pred             HHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence            344455556667887788888888887776543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.57  E-value=0.00043  Score=65.10  Aligned_cols=183  Identities=16%  Similarity=0.203  Sum_probs=112.2

Q ss_pred             cCCCccchhhhhhhhhhhhcCC--CcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHH
Q 010080          306 TSNSLQLLIPVLRSLGNLVAGD--SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIH  383 (518)
Q Consensus       306 ~~~~~~v~~~al~~L~nl~~~~--~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li  383 (518)
                      .+.+.+.+..++..|..++.++  ......+++.    -..++..+...+.+....+.+.||.+++.++..........+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~----l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~   92 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVEC----LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA   92 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHH----HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHH----HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence            4567777888888888888776  2222222210    012334566666667778999999999999875444455554


Q ss_pred             hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHH
Q 010080          384 SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME  463 (518)
Q Consensus       384 ~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~  463 (518)
                      + .++|.|+..+.++...++..|..+|..++....   ..+        .+    .++.+...+.++++.+...++..+.
T Consensus        93 ~-~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~--------~~----~~~~l~~~~~~Kn~~vR~~~~~~l~  156 (228)
T PF12348_consen   93 D-ILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSP--------KI----LLEILSQGLKSKNPQVREECAEWLA  156 (228)
T ss_dssp             H-HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H----------HH----HHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHH--------HH----HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            4 388999999999988899999999999987531   011        11    1556667788899999999999999


Q ss_pred             HHHccCCCCcchhHHHhhc----hHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          464 LVLRGMPNHEGTKLVERED----GIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       464 ~il~~~~~~~~~~~ie~~g----gl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                      .++...+..  ...+...+    ..+.|..+..++++++++.|...+..|+
T Consensus       157 ~~l~~~~~~--~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  157 IILEKWGSD--SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY  205 (228)
T ss_dssp             HHHTT-------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHccch--HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence            999876511  11122222    3446777889999999999988877765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.0034  Score=64.91  Aligned_cols=190  Identities=15%  Similarity=0.169  Sum_probs=123.8

Q ss_pred             hHHHhhhCCCChhHHHHH---HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080          212 PPLARMMLPNKGSTVRTA---AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT  288 (518)
Q Consensus       212 ~~L~~ll~~~~~~~~~~a---~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~  288 (518)
                      ...+.++..++..++..|   +|..+|.+-.+.+....+.-....++..+.+.+.+-.-.|+..|+.+|+.+..-+.+.+
T Consensus       237 ~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i  316 (823)
T KOG2259|consen  237 SRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEII  316 (823)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHH
Confidence            345566667777777666   67777887332222211111234677778888888888899999999998887666666


Q ss_pred             hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC-----------CCcccceeeccCCCchhhhHHHHHHHhccCh
Q 010080          289 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG-----------DSSTISDVLVPGHGITDQVIAVLVKCLKSEH  357 (518)
Q Consensus       289 ~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~-----------~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~  357 (518)
                      +..++..+...+-..=..+.-+    ..+..=|..+.|           .+.+...+|.+      |+-..++.-|..+-
T Consensus       317 ~QTLdKKlms~lRRkr~ahkrp----k~l~s~GewSsGk~~~advpsee~d~~~~siI~s------GACGA~VhGlEDEf  386 (823)
T KOG2259|consen  317 QQTLDKKLMSRLRRKRTAHKRP----KALYSSGEWSSGKEWNADVPSEEDDEEEESIIPS------GACGALVHGLEDEF  386 (823)
T ss_pred             HHHHHHHHhhhhhhhhhcccch----HHHHhcCCcccCccccccCchhhccccccccccc------cccceeeeechHHH
Confidence            6666654444322211111111    112112211211           33445556654      47777777777777


Q ss_pred             hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          358 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       358 ~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      ..||+.|...++-|+..+|.....     .+..|++++.+...+||..|..+|..++.+
T Consensus       387 ~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  387 YEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999877665433     466899999999999999999999999875

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.097  Score=55.68  Aligned_cols=287  Identities=14%  Similarity=0.127  Sum_probs=172.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      .+|+++|.   |+....+++|+..+-.++.++.+-       +...|..|.-..+.+ .++..-.--.|...|..+++..
T Consensus        38 ~dL~~lLd---Snkd~~KleAmKRIia~iA~G~dv-------S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA  106 (968)
T KOG1060|consen   38 DDLKQLLD---SNKDSLKLEAMKRIIALIAKGKDV-------SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA  106 (968)
T ss_pred             HHHHHHHh---ccccHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce
Confidence            46666664   888889999999999988888762       446777777776655 3444444445555565443211


Q ss_pred             HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                         +-.|..|-+-|.. +|+.+|..|+++|..|=.       -++..=++-.+-.......+-+++.|+.++-.|.+-. 
T Consensus       107 ---LLSIntfQk~L~D-pN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-  174 (968)
T KOG1060|consen  107 ---LLSINTFQKALKD-PNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-  174 (968)
T ss_pred             ---eeeHHHHHhhhcC-CcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-
Confidence               1246677777877 899999988888876532       1111111112223334567899999999999998653 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  321 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~  321 (518)
                      +..      ....+..+-.||.+.++-|...|..++-.+|-   ++.+.+  ++-..++..+|.+-.+. -+.-.+..|-
T Consensus       175 ~e~------k~qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~dvdeW-gQvvlI~mL~  242 (968)
T KOG1060|consen  175 PEQ------KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLPDVDEW-GQVVLINMLT  242 (968)
T ss_pred             hhh------HHHHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhccchhhh-hHHHHHHHHH
Confidence            221      23566777788889999999999999988874   344444  33455555555321111 1111122222


Q ss_pred             hhhcC---CC----------------------cccceeeccCCCchh-hhHHHHHHHhccChhhhHHHHHHHHHHhccCC
Q 010080          322 NLVAG---DS----------------------STISDVLVPGHGITD-QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS  375 (518)
Q Consensus       322 nl~~~---~~----------------------~~~~~~i~~G~~~~~-~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~  375 (518)
                      ..+..   ++                      .++-.+.+.    +. -++.....+|.+.++.+...+|.+...++-.+
T Consensus       243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~----D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~  318 (968)
T KOG1060|consen  243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDP----DLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN  318 (968)
T ss_pred             HHHHhcCCCccccccccccCcccccccccccccCCCcccCc----cHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence            11110   00                      001111111    11 24556667888889999998888888886433


Q ss_pred             HHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          376 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       376 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                        +..     .++.+|+++|.+.. .+|.-.+..|..++.
T Consensus       319 --~~~-----~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~  350 (968)
T KOG1060|consen  319 --QVT-----KIAKALVRLLRSNR-EVQYVVLQNIATISI  350 (968)
T ss_pred             --HHH-----HHHHHHHHHHhcCC-cchhhhHHHHHHHHh
Confidence              222     35678899886654 466666666665554

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.51  E-value=0.015  Score=55.25  Aligned_cols=219  Identities=16%  Similarity=0.161  Sum_probs=140.4

Q ss_pred             HHHHHHHHHhcCChHHHHHhc--C-ChHHHHHhhcCC-CCHHHHHHHHHHHHhhhCCChhhHHHHHh-cCChhHHHhhhC
Q 010080          145 EAAWCLTNIAAGKQEETKALL--P-ALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLS-QGALPPLARMML  219 (518)
Q Consensus       145 eA~~~L~nia~~~~~~~~~v~--~-~v~~Lv~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~g~i~~L~~ll~  219 (518)
                      -|..|+.+++.. ++.+..+-  . .-..++.+++++ ...++|...+.++.-+.. ++.+.+.+-. ...+.-|+++++
T Consensus       168 fav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli~iVk  245 (432)
T COG5231         168 FAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLIAIVK  245 (432)
T ss_pred             HHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            477888888754 34555443  2 445566777653 347899999888888887 5566533322 234666777777


Q ss_pred             CC-ChhHHHHHHHHHHHhhcCCCCCc-hhhHHHhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcC------------
Q 010080          220 PN-KGSTVRTAAWALSNLIKGPDPKP-ATELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSAL------------  283 (518)
Q Consensus       220 ~~-~~~~~~~a~~~L~nL~~~~~~~~-~~~~i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~------------  283 (518)
                      .. ...+.|-++..+.|+|. +.|+. .+......++.|..-.++.  ..|+++..+.-..=+.|...            
T Consensus       246 ~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~  324 (432)
T COG5231         246 ERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLN  324 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            54 78899999999999996 33332 2223332334444333333  45666665543332222211            


Q ss_pred             ---------C---------chhhhHHHhc--CchHHHHHHHccCCCcc-chhhhhhhhhhhhcCCCcccceeeccCCCch
Q 010080          284 ---------S---------NVATSLLVKS--GVLQLLVERLATSNSLQ-LLIPVLRSLGNLVAGDSSTISDVLVPGHGIT  342 (518)
Q Consensus       284 ---------~---------~~~~~~~~~~--g~~~~Lv~lL~~~~~~~-v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~  342 (518)
                               +         ..+.+.+.+.  .++..|.++|. ++.+. ...-||.-|+.++...++....+..      
T Consensus       325 ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq-~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K------  397 (432)
T COG5231         325 ELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ-SNNPNTWICVACSDIFQLVRASPEINAVLSK------  397 (432)
T ss_pred             HHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh-cCCCCceEeeeHhhHHHHHHhCchHHHHHHH------
Confidence                     1         1223334332  46788888885 55555 5667899999999888777665554      


Q ss_pred             hhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080          343 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  373 (518)
Q Consensus       343 ~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~  373 (518)
                      .|+-..++.+++|+++.|+.+|..++.-+..
T Consensus       398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         398 YGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            4688999999999999999999999876653

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.47  E-value=0.018  Score=53.49  Aligned_cols=256  Identities=18%  Similarity=0.235  Sum_probs=152.1

Q ss_pred             HHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHH
Q 010080          127 IPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL  205 (518)
Q Consensus       127 ip~Lv~~L~~~~~~-~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~  205 (518)
                      +..+.+.|...+.+ .-.+.|...|.|+.+...         +..+.+.... ++..++...+++||.....        
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~---------i~~i~ka~~d-~s~llkhe~ay~LgQ~~~~--------   66 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPAA---------IKAITKAFID-DSALLKHELAYVLGQMQDE--------   66 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCChHH---------HHHHHHhccc-chhhhccchhhhhhhhccc--------
Confidence            33444555443222 122557777777775332         3344444444 3456677788888876652        


Q ss_pred             HhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC
Q 010080          206 LSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL  283 (518)
Q Consensus       206 ~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  283 (518)
                         .++|.|+..+...  .+-++-.|..+|.++. .            ...++.+-+..+++-.+|...+..++.++-+.
T Consensus        67 ---~Av~~l~~vl~desq~pmvRhEAaealga~~-~------------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~  130 (289)
T KOG0567|consen   67 ---DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D------------PESLEILTKYIKDPCKEVRETCELAIKRLEWK  130 (289)
T ss_pred             ---hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c------------hhhHHHHHHHhcCCccccchHHHHHHHHHHHh
Confidence               4689999888744  5666778999998885 2            14456666777555567788788888887753


Q ss_pred             Cchhh----hHH--H------hcCchHHHHHHHccCCCccc-hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHH
Q 010080          284 SNVAT----SLL--V------KSGVLQLLVERLATSNSLQL-LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV  350 (518)
Q Consensus       284 ~~~~~----~~~--~------~~g~~~~Lv~lL~~~~~~~v-~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~  350 (518)
                      +.-..    ...  .      ..+-+..+-..|.+.+.+.. +-.|+..|.|+-                 ....+..|.
T Consensus       131 ~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g-----------------~EeaI~al~  193 (289)
T KOG0567|consen  131 DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG-----------------TEEAINALI  193 (289)
T ss_pred             hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC-----------------cHHHHHHHH
Confidence            21110    000  0      01112233222222221111 224455555542                 123566777


Q ss_pred             HHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 010080          351 KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ  428 (518)
Q Consensus       351 ~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~  428 (518)
                      .-+..++.-.|.+++++++.+-+..           .+|.|...|.  ...+-||.+|+.||+.++..            
T Consensus       194 ~~l~~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------  250 (289)
T KOG0567|consen  194 DGLADDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------  250 (289)
T ss_pred             HhcccchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------
Confidence            7777778889999999999885433           6788888884  45678999999999998641            


Q ss_pred             HHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHH
Q 010080          429 EHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELV  465 (518)
Q Consensus       429 ~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~i  465 (518)
                       .        +++.|...+.+.++-+...|--+|..+
T Consensus       251 -~--------~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  251 -D--------CVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             -H--------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence             1        456677777666655554444444433

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.46  E-value=0.018  Score=59.69  Aligned_cols=265  Identities=16%  Similarity=0.096  Sum_probs=163.5

Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHh---------cCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHH
Q 010080          103 LRELRRLLSRFEFPPIETALKAGAIPVLVQCL---------AFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLL  171 (518)
Q Consensus       103 ~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L---------~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~L  171 (518)
                      +..||- +++++. ..+.++....+..|..+=         ..........||+.||.|+...++..++..+  +..+.+
T Consensus         2 L~~LRi-LsRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRI-LSRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHH-HccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            344444 666653 234455555666666665         2233455668999999999999888887777  788999


Q ss_pred             HHhhcCC----CCHHHHHHHHHHHHhhhCCChhhHHHHHhc-CChhHHHhhhCC-----------------CChhHHHHH
Q 010080          172 IAHLGEK----SSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-GALPPLARMMLP-----------------NKGSTVRTA  229 (518)
Q Consensus       172 v~lL~~~----~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g~i~~L~~ll~~-----------------~~~~~~~~a  229 (518)
                      +..|...    .+.++.--..+.|-=++...+..+..+++. +++..|...|..                 .+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999874    267788888888877777777778776655 677777765531                 123456777


Q ss_pred             HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc---------CChhHHHHHHHHHHHhhcCCchh-------h----h
Q 010080          230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR---------ADEELTTEVAWVVVYLSALSNVA-------T----S  289 (518)
Q Consensus       230 ~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~---------~d~~v~~~a~~~L~~L~~~~~~~-------~----~  289 (518)
                      +..+.|+..........+   ..+.++.|+.++.+         +.......+..+|.++--.....       .    .
T Consensus       160 LKllFNit~~~~~~~~~~---~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~  236 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEE---FSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP  236 (446)
T ss_pred             HHHHHHhhhccCcccchh---hhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence            888889875532211101   23444444444331         11356777777777763211111       0    0


Q ss_pred             HHHhcCchHHHHHHHcc----CC---CccchhhhhhhhhhhhcCCCccc--------------ceeeccCCCchhhhHHH
Q 010080          290 LLVKSGVLQLLVERLAT----SN---SLQLLIPVLRSLGNLVAGDSSTI--------------SDVLVPGHGITDQVIAV  348 (518)
Q Consensus       290 ~~~~~g~~~~Lv~lL~~----~~---~~~v~~~al~~L~nl~~~~~~~~--------------~~~i~~G~~~~~~~l~~  348 (518)
                      ......++..|+.+|..    ..   -.+...|.+.+|.+++..+....              ....+.|    ..+-..
T Consensus       237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~----~tL~~r  312 (446)
T PF10165_consen  237 EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKG----DTLRSR  312 (446)
T ss_pred             CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCC----cchHHH
Confidence            01122345666666541    11   23577899999999987753221              1222222    357778


Q ss_pred             HHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080          349 LVKCLKSEHRVLKKEAAWVLSNIAAGSV  376 (518)
Q Consensus       349 L~~lL~~~~~~i~~~a~~~Lsnl~~~~~  376 (518)
                      |++++.+..+.++..+.-.+-.|+..+.
T Consensus       313 LlrLmt~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  313 LLRLMTSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             HHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence            9999999888889888888888875543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.44  E-value=0.035  Score=57.52  Aligned_cols=234  Identities=18%  Similarity=0.131  Sum_probs=147.3

Q ss_pred             CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhh
Q 010080          178 KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPDPKPATELIKVD  252 (518)
Q Consensus       178 ~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~  252 (518)
                      .++..+...|+.||+|+...++..|..+.+.|..+.++..++..     +.++.--....|.-++... +....+++...
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~-~~~~~~L~~e~  121 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALR-PDDRKKLIEEH  121 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-hhHHHHHHHHh
Confidence            36789999999999999999999999999999999999999854     5666666777666666432 33444555555


Q ss_pred             chHHHHHHHhc----------c-------CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccC--------
Q 010080          253 GLLDAILRHLK----------R-------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS--------  307 (518)
Q Consensus       253 ~~l~~L~~lL~----------~-------~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~--------  307 (518)
                      +++..+...|.          .       .+.+...+++..+.|++...+.... -...+.++.++..|...        
T Consensus       122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~  200 (446)
T PF10165_consen  122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSP  200 (446)
T ss_pred             hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCC
Confidence            77777766553          1       1446788999999999875443322 11234455555544321        


Q ss_pred             CCccchhhhhhhhhhhhcCCCcc-------cceeeccCCCchhhhHHHHHHHhccC-----h---hhhHHHHHHHHHHhc
Q 010080          308 NSLQLLIPVLRSLGNLVAGDSST-------ISDVLVPGHGITDQVIAVLVKCLKSE-----H---RVLKKEAAWVLSNIA  372 (518)
Q Consensus       308 ~~~~v~~~al~~L~nl~~~~~~~-------~~~~i~~G~~~~~~~l~~L~~lL~~~-----~---~~i~~~a~~~Lsnl~  372 (518)
                      +.......++.+|.|+--.....       ...+.-.|  .+...+..|+.+|...     .   ...-.-..-+|.+++
T Consensus       201 ~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~--~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  201 PLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG--DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             cchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC--CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence            11223455666666663111111       00011001  1234666677766432     1   123444566777777


Q ss_pred             cCCHHHHHHHHh----------------CCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          373 AGSVEHKQLIHS----------------SEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       373 ~~~~~~~~~li~----------------~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      ......++.+..                ..+-..|++++.+..+.++.-++..+..+|.
T Consensus       279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            665444444432                2345679999999889999999999988885

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.44  E-value=0.00095  Score=53.14  Aligned_cols=95  Identities=13%  Similarity=0.119  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc
Q 010080          360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC  439 (518)
Q Consensus       360 i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~  439 (518)
                      .|+.++++|+.++.+-+..+...++. ++|+++..+.+++.+||..|+.+|.|++....         .+.+.++  ..+
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---------~~~l~~f--~~I   69 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVAR---------GEILPYF--NEI   69 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---------HHHHHHH--HHH
Confidence            47788999999987766666666554 89999999999999999999999999986421         1112221  347


Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHHHc
Q 010080          440 LSGFIDLVRSADIEAARLGLQFMELVLR  467 (518)
Q Consensus       440 i~~L~~lL~~~d~~~~~~~l~~l~~il~  467 (518)
                      +..|+.++.++|+.++..+ +.|.++++
T Consensus        70 F~~L~kl~~D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   70 FDALCKLSADPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             HHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence            8889999999998866555 77887764

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.41  E-value=0.016  Score=57.14  Aligned_cols=209  Identities=16%  Similarity=0.204  Sum_probs=145.6

Q ss_pred             HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCC---chhhHHH-h-hchHHHHHHHhccCChhHHHHHHHH
Q 010080          202 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK---PATELIK-V-DGLLDAILRHLKRADEELTTEVAWV  276 (518)
Q Consensus       202 r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~i~-~-~~~l~~L~~lL~~~d~~v~~~a~~~  276 (518)
                      ...+...+.+..|+..|..-+-+.++.++-.++++.+.....   |..+.+. . ..++..|+..  .+++++...+--.
T Consensus        69 a~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g--y~~~dial~~g~m  146 (335)
T PF08569_consen   69 AQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG--YENPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG--GGSTTTHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH--hcCccccchHHHH
Confidence            345566788889999888878889999999999998864322   2333332 1 1233333322  4466777777777


Q ss_pred             HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC
Q 010080          277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE  356 (518)
Q Consensus       277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~  356 (518)
                      |..++. .+...+.++....+..+.++. ..++-++...|..++.-+.+.+...+...+...   -..++..+..+|.++
T Consensus       147 lRec~k-~e~l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n---~d~ff~~~~~Ll~s~  221 (335)
T PF08569_consen  147 LRECIK-HESLAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN---YDRFFQKYNKLLESS  221 (335)
T ss_dssp             HHHHTT-SHHHHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHHHHHHHHHHCT-S
T ss_pred             HHHHHh-hHHHHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHccCC
Confidence            777775 455677888888999999987 588889999999999998877665444444321   135677888999999


Q ss_pred             hhhhHHHHHHHHHHhccCC--HHHHHH-HHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080          357 HRVLKKEAAWVLSNIAAGS--VEHKQL-IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       357 ~~~i~~~a~~~Lsnl~~~~--~~~~~~-li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  417 (518)
                      +.-+|+.+...|+.|.-..  -..... +-+..-+..++.+|++.+..+|-||.-+.--.+.+|
T Consensus       222 NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  222 NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            9999999999999998643  222223 334456889999999999999999999998888765

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0093  Score=63.11  Aligned_cols=299  Identities=18%  Similarity=0.157  Sum_probs=191.2

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHH-HHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080          124 AGAIPVLVQCLAFGSPDEQLLEA-AWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  202 (518)
Q Consensus       124 ~g~ip~Lv~~L~~~~~~~~~~eA-~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  202 (518)
                      .|.++.+-.-|.+.. +..+.+| -.++..+..|.+     +....|-+++.... .+.+++.-+--=+.|.+...|.. 
T Consensus        12 k~ei~elks~l~s~~-~~kr~~a~kkvIa~Mt~G~D-----vSslF~dvvk~~~T-~dlelKKlvyLYl~nYa~~~P~~-   83 (734)
T KOG1061|consen   12 KGEIPELKSQLNSQS-KEKRKDAVKKVIAYMTVGKD-----VSSLFPDVVKCMQT-RDLELKKLVYLYLMNYAKGKPDL-   83 (734)
T ss_pred             hhhchHHHHHhhhhh-hhhHHHHHHHHHhcCccCcc-----hHhhhHHHHhhccc-CCchHHHHHHHHHHHhhccCchH-
Confidence            344555555553322 2333443 345555555521     22356777777776 67888888888888888754432 


Q ss_pred             HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                          ..++++.++.=..++++.++.-|..++..+--.   +    +  ..-+...|.+.++++++.++..+.-+...+-.
T Consensus        84 ----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~---~----i--~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~  150 (734)
T KOG1061|consen   84 ----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVD---K----I--TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD  150 (734)
T ss_pred             ----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh---H----H--HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc
Confidence                234566666666677787777777666554321   1    2  23567788899999999999999988888776


Q ss_pred             CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080          283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  362 (518)
Q Consensus       283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~  362 (518)
                      .+   .+...+.|.+..|..++. +.++.|...|+.++..|...+.......+      ....+..++..+......-+.
T Consensus       151 ~~---~~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~~~~l------~~~~~~~lL~al~ec~EW~qi  220 (734)
T KOG1061|consen  151 ID---PDLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHPSVNLLEL------NPQLINKLLEALNECTEWGQI  220 (734)
T ss_pred             CC---hhhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCCcccc------cHHHHHHHHHHHHHhhhhhHH
Confidence            43   456678899999999995 78889999999999999977654222222      133445555555443333333


Q ss_pred             HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHH
Q 010080          363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG  442 (518)
Q Consensus       363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~  442 (518)
                      ...-++.+-....+...+.     ++..+...|++.+..+.-.+..++.+....           ..++....-..+-++
T Consensus       221 ~IL~~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~~~~~-----------~~~~~~~~~~K~~~p  284 (734)
T KOG1061|consen  221 FILDCLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQLVKY-----------LKQVNELLFKKVAPP  284 (734)
T ss_pred             HHHHHHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHHHHHH-----------HHHHHHHHHHHhccc
Confidence            3333333333222222222     455677778888888888888888777643           233445555677888


Q ss_pred             HHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080          443 FIDLVRSADIEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       443 L~~lL~~~d~~~~~~~l~~l~~il~~~~  470 (518)
                      |+.++.... ++..++|+=+..|+...+
T Consensus       285 l~tlls~~~-e~qyvaLrNi~lil~~~p  311 (734)
T KOG1061|consen  285 LVTLLSSES-EIQYVALRNINLILQKRP  311 (734)
T ss_pred             ceeeecccc-hhhHHHHhhHHHHHHhCh
Confidence            888887766 888888887777776554

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.35  E-value=0.00067  Score=54.05  Aligned_cols=58  Identities=16%  Similarity=0.227  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC--CCChhHHHHHHHHHHHhhcCC
Q 010080          183 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--PNKGSTVRTAAWALSNLIKGP  240 (518)
Q Consensus       183 v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~  240 (518)
                      ++..++..|+|++..++..++.+.+.|+||.+++...  ..++-+++.|.|++.|||.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n   61 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN   61 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence            3567889999999999999999999999999998765  447999999999999999874

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.19  E-value=0.006  Score=62.62  Aligned_cols=221  Identities=15%  Similarity=0.159  Sum_probs=126.3

Q ss_pred             hhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch--hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc-hh
Q 010080          211 LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA--TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-VA  287 (518)
Q Consensus       211 i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~--~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~  287 (518)
                      +..++.+|.+..+.++..++-+.+.|+.-  -+.|  .+.+.  .+=-.|..-|...+++++-..+.|+..+..... ..
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~v--lk~c~e~~~l~--klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKV--LKACGETKELA--KLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHH--HHhcchHHHHH--HHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            33444555666666666666666655421  0011  11111  111224445556788999888888887775221 11


Q ss_pred             hhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHH
Q 010080          288 TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV  367 (518)
Q Consensus       288 ~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~  367 (518)
                      .|- --.|++|.|..+| .+...++....+..+|.|+...++.+. +-+     +..+---|+.+|.+.+..+|+.|.-+
T Consensus       682 mqp-Pi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~-~rE-----WMRIcfeLvd~Lks~nKeiRR~A~~t  753 (975)
T COG5181         682 MQP-PISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIG-VRE-----WMRICFELVDSLKSWNKEIRRNATET  753 (975)
T ss_pred             cCC-chhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCC-HHH-----HHHHHHHHHHHHHHhhHHHHHhhhhh
Confidence            111 1258899999999 477788888999999999977765321 111     12233456777788888999999999


Q ss_pred             HHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHh
Q 010080          368 LSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL  446 (518)
Q Consensus       368 Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~l  446 (518)
                      ++.|+.- .|.        +++..|++-|+.++-..|.-..-+|+-.+..+    | |            -.++|.|.+=
T Consensus       754 fG~Is~aiGPq--------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~c----g-p------------fsVlP~lm~d  808 (975)
T COG5181         754 FGCISRAIGPQ--------DVLDILLNNLKVQERQQRVCTSVAISIVAEYC----G-P------------FSVLPTLMSD  808 (975)
T ss_pred             hhhHHhhcCHH--------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc----C-c------------hhhHHHHHhc
Confidence            9988642 222        24556666676666544443333443332210    1 1            1245555554


Q ss_pred             hccCCHHHHHHHHHHHHHHHcc
Q 010080          447 VRSADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       447 L~~~d~~~~~~~l~~l~~il~~  468 (518)
                      ...++..++.-+|+++..+++.
T Consensus       809 Y~TPe~nVQnGvLkam~fmFey  830 (975)
T COG5181         809 YETPEANVQNGVLKAMCFMFEY  830 (975)
T ss_pred             ccCchhHHHHhHHHHHHHHHHH
Confidence            4445555555566666655543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.081  Score=58.18  Aligned_cols=326  Identities=14%  Similarity=0.101  Sum_probs=174.7

Q ss_pred             hHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 010080           77 TSSAVEELKS-AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA  155 (518)
Q Consensus        77 ~~~~~~~l~~-~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~  155 (518)
                      ++..+|.+.. ++++++..|...+-.|.+.+-++.++-+-.-.     ..+|...+.++..-+++..-..|+.+|..+|.
T Consensus       335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La-----d~vi~svid~~~p~e~~~aWHgacLaLAELA~  409 (1133)
T KOG1943|consen  335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA-----DQVIGSVIDLFNPAEDDSAWHGACLALAELAL  409 (1133)
T ss_pred             cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH-----HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence            4455555544 55688899999999999999998777542222     33455555665543333333568889999985


Q ss_pred             CChHHHHHhcCChHHHHHhhcC-------CCCHHHHHHHHHHHHhhhCCChhh-HHHHHhcCChhH-HHhhhCCCChhHH
Q 010080          156 GKQEETKALLPALPLLIAHLGE-------KSSSPVAEQCAWALGNVAGEGEEF-RNVLLSQGALPP-LARMMLPNKGSTV  226 (518)
Q Consensus       156 ~~~~~~~~v~~~v~~Lv~lL~~-------~~~~~v~~~a~~~L~nla~d~~~~-r~~~~~~g~i~~-L~~ll~~~~~~~~  226 (518)
                      ..----..+...+|.+++-|..       +....||+.|++.++.++.-.... -+-++. ...+. |+..+-.+....+
T Consensus       410 rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncR  488 (1133)
T KOG1943|consen  410 RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCR  488 (1133)
T ss_pred             cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHh
Confidence            3322222223467777766642       124578999887777776532211 011111 11111 1222335678889


Q ss_pred             HHHHHHHHHhh-cCCCCCchhhHH----------------------H-hhchHHH-HHHH----hccCChhHHHHHHHHH
Q 010080          227 RTAAWALSNLI-KGPDPKPATELI----------------------K-VDGLLDA-ILRH----LKRADEELTTEVAWVV  277 (518)
Q Consensus       227 ~~a~~~L~nL~-~~~~~~~~~~~i----------------------~-~~~~l~~-L~~l----L~~~d~~v~~~a~~~L  277 (518)
                      |.|.-+|-... |..+-+--.+++                      . -.+.... +-++    +.+-|..++..++|+|
T Consensus       489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL  568 (1133)
T KOG1943|consen  489 RAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL  568 (1133)
T ss_pred             HHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence            99998887554 322210000111                      0 0111122 2222    2356889999999999


Q ss_pred             HHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCC-Cchhh---hHHHHHHHh
Q 010080          278 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH-GITDQ---VIAVLVKCL  353 (518)
Q Consensus       278 ~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~-~~~~~---~l~~L~~lL  353 (518)
                      ..|+...+++    ...+++++++... .+.+...+.-+.-+.|.++.+.- ....++..-. ..-++   .++.+..--
T Consensus       569 ~~Ls~~~pk~----~a~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~~~~-~l~~~~~~l~e~~i~~l~~ii~~~~~~~  642 (1133)
T KOG1943|consen  569 HKLSLTEPKY----LADYVLPPLLDST-LSKDASMRHGVFLAAGEVIGALR-KLEPVIKGLDENRIAGLLSIIPPICDRY  642 (1133)
T ss_pred             HHHHHhhHHh----hcccchhhhhhhh-cCCChHHhhhhHHHHHHHHHHhh-hhhhhhhhhHHHHhhhhhhhccHHHHHH
Confidence            9999754433    2356777777766 35565555544444444432210 0000000000 00001   122222211


Q ss_pred             ccCh--hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          354 KSEH--RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       354 ~~~~--~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      ....  .-++...+..+-++........+..+-.+.-..+.+.+++++ .+|..|.|+++.+++
T Consensus       643 ~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  643 FYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             hccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence            1111  345666777888887766554444444445555556665555 788999999998876

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.015  Score=60.43  Aligned_cols=220  Identities=16%  Similarity=0.146  Sum_probs=136.8

Q ss_pred             HHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHH---HHHHHHhhcCCc--hhh
Q 010080          214 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEV---AWVVVYLSALSN--VAT  288 (518)
Q Consensus       214 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a---~~~L~~L~~~~~--~~~  288 (518)
                      |..+....+..++.+|+-+|..|..+.  +.      ...+....++++.+++++|+..|   .|..++..-.+.  +.-
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KL------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccc--cc------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            555556667777777777777776542  11      12345667888888888888777   555666652221  111


Q ss_pred             hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHH
Q 010080          289 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL  368 (518)
Q Consensus       289 ~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~L  368 (518)
                      +.-....++..+...+ ...+..++..|..+||-+-.-+++.++..++      ..++..+...     ..-.+......
T Consensus       275 e~kl~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd------KKlms~lRRk-----r~ahkrpk~l~  342 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAV-RDRSLSVRVEAAKALGEFEQVSEEIIQQTLD------KKLMSRLRRK-----RTAHKRPKALY  342 (823)
T ss_pred             hhhhHHHHHHHHHHHH-hcCceeeeehHHHHhchHHHhHHHHHHHHHH------HHHhhhhhhh-----hhcccchHHHH
Confidence            1112234567777777 4778889999999999886555444333332      1122211111     01111111222


Q ss_pred             HHh--ccC-----------CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 010080          369 SNI--AAG-----------SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV  435 (518)
Q Consensus       369 snl--~~~-----------~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~  435 (518)
                      ++-  ..|           ..++-..+|.+|.-..+++-|.+.=.+||+.|+..++.++....   +.+           
T Consensus       343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP---~FA-----------  408 (823)
T KOG2259|consen  343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP---GFA-----------  408 (823)
T ss_pred             hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC---CcH-----------
Confidence            222  111           11233457888988999999999889999999999999987421   221           


Q ss_pred             hcCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080          436 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       436 ~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~  468 (518)
                       ..++..|++++++....+...++.+|..|...
T Consensus       409 -~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  409 -VRALDFLVDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             -HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence             12577789999988888888898888888754

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.053  Score=56.88  Aligned_cols=276  Identities=13%  Similarity=0.137  Sum_probs=169.3

Q ss_pred             hHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCC-CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh
Q 010080          140 DEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM  218 (518)
Q Consensus       140 ~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll  218 (518)
                      +..+.-|+.++.|+.+.  +...++..-||.   +|-++ ...-|+..|+-||-.+-..+|+   .+-..+....++++|
T Consensus       125 ~~fv~LAL~~I~niG~r--e~~ea~~~DI~K---lLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL  196 (938)
T KOG1077|consen  125 PTFVCLALHCIANIGSR--EMAEAFADDIPK---LLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL  196 (938)
T ss_pred             cHHHHHHHHHHHhhccH--hHHHHhhhhhHH---HHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh
Confidence            33446688999998753  455565566664   44443 3456888899999988875543   344556788999999


Q ss_pred             CCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-------------cCChhHHHHHHHHHHHhhcCCc
Q 010080          219 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-------------RADEELTTEVAWVVVYLSALSN  285 (518)
Q Consensus       219 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-------------~~d~~v~~~a~~~L~~L~~~~~  285 (518)
                      ...+..+...++..+--|+... |+.....  ...++..|.++..             -+.|.+...++..|.+.-.-.+
T Consensus       197 ~D~~~gv~ta~~sLi~~lvk~~-p~~yk~~--~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D  273 (938)
T KOG1077|consen  197 DDQHMGVVTAATSLIEALVKKN-PESYKTC--LPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPED  273 (938)
T ss_pred             CccccceeeehHHHHHHHHHcC-CHHHhhh--HHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCC
Confidence            9988888888888888888653 3321111  1123333333322             1345788888888888754222


Q ss_pred             -hhhhHHHhcCchHHHHHHHccCC-Cccc-----hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh
Q 010080          286 -VATSLLVKSGVLQLLVERLATSN-SLQL-----LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR  358 (518)
Q Consensus       286 -~~~~~~~~~g~~~~Lv~lL~~~~-~~~v-----~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~  358 (518)
                       .....+  ..++..++......+ +.++     .-.++.-.-+++..-|..-..+.        ..+..|-++|.+...
T Consensus       274 ~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--------~~~~~Lg~fls~rE~  343 (938)
T KOG1077|consen  274 PSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--------RAVNQLGQFLSHRET  343 (938)
T ss_pred             chHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--------HHHHHHHHHhhcccc
Confidence             111111  123333333332111 1111     12333333344444333333222        477888899999999


Q ss_pred             hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 010080          359 VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR  437 (518)
Q Consensus       359 ~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~  437 (518)
                      .+|.-|.-.+..++... ..+.++-.+  ...++..|+ ..|..+|+.|+-.|.-+|...            ....    
T Consensus       344 NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~------------Nak~----  404 (938)
T KOG1077|consen  344 NIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS------------NAKQ----  404 (938)
T ss_pred             cchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh------------hHHH----
Confidence            99999999999888763 334444444  778889997 789999999999999999742            2222    


Q ss_pred             CchHHHHHhhccCCHHHHH
Q 010080          438 GCLSGFIDLVRSADIEAAR  456 (518)
Q Consensus       438 g~i~~L~~lL~~~d~~~~~  456 (518)
                       ++..|++.|...|..+.+
T Consensus       405 -IV~elLqYL~tAd~sire  422 (938)
T KOG1077|consen  405 -IVAELLQYLETADYSIRE  422 (938)
T ss_pred             -HHHHHHHHHhhcchHHHH
Confidence             245566777777766554

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.083  Score=57.60  Aligned_cols=281  Identities=17%  Similarity=0.177  Sum_probs=156.5

Q ss_pred             cCCHHHHHHHhc------CCCChHHHHH-HHHHHHHHhcC--ChHHHHHhcC--ChHHHHHhhcCCCCHHHHHHHHHHHH
Q 010080          124 AGAIPVLVQCLA------FGSPDEQLLE-AAWCLTNIAAG--KQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALG  192 (518)
Q Consensus       124 ~g~ip~Lv~~L~------~~~~~~~~~e-A~~~L~nia~~--~~~~~~~v~~--~v~~Lv~lL~~~~~~~v~~~a~~~L~  192 (518)
                      .|+++.++..|.      .++.+..|.+ |+..++++++-  ....-+..++  .++.++-.+++ +.--++..|+|.++
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~  487 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQS-PYGYLRARACWVLS  487 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcC-chhHHHHHHHHHHH
Confidence            456777777776      2333334455 88899998831  1111112222  34555555555 56779999999999


Q ss_pred             hhhCCChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCChhH
Q 010080          193 NVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEEL  269 (518)
Q Consensus       193 nla~d~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~--~~~~l~~L~~lL~~~d~~v  269 (518)
                      .++.  .++.+...-..++....+.|. +.+..++..|+-+|..+.++.. . ..+.+.  ..+.++.|+++.+..+.+.
T Consensus       488 ~~~~--~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~-~-~~e~~~~hvp~~mq~lL~L~ne~End~  563 (1010)
T KOG1991|consen  488 QFSS--IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE-Q-ADEKVSAHVPPIMQELLKLSNEVENDD  563 (1010)
T ss_pred             HHHh--ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch-h-hhhhHhhhhhHHHHHHHHHHHhcchhH
Confidence            9983  234444444556667777776 6678999999999999887632 1 111111  2345555666666555554


Q ss_pred             HHHHHHHHH-HhhcCCchhhhHHHhcCchHHHHHHHccC--CCccc---hhhh---hhhhhhhhcCCCcccceeeccCCC
Q 010080          270 TTEVAWVVV-YLSALSNVATSLLVKSGVLQLLVERLATS--NSLQL---LIPV---LRSLGNLVAGDSSTISDVLVPGHG  340 (518)
Q Consensus       270 ~~~a~~~L~-~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~--~~~~v---~~~a---l~~L~nl~~~~~~~~~~~i~~G~~  340 (518)
                      +..++-.+- +.+..-......+. ..+.....+.+..+  .+...   ...|   |+++..|...-+..-+.+-+    
T Consensus       564 Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~----  638 (1010)
T KOG1991|consen  564 LTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ----  638 (1010)
T ss_pred             HHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH----
Confidence            444443321 22211011111111 12233334444321  11111   2223   33333333222111111110    


Q ss_pred             chhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          341 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       341 ~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      ....++|++-.+|.+.-..+-.+++-.+.+++...++ +...+- |+++.+.+.++....+.-.+..-+|.|....
T Consensus       639 le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~-Isp~mW-~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~  712 (1010)
T KOG1991|consen  639 LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKE-ISPIMW-GLLELILEVFQDDGIDYFTDMMPALHNYVTY  712 (1010)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcc-cCHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHhhheee
Confidence            1235677777788887788889999999998876532 322222 4788888888888788888888999988764

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.03  E-value=0.077  Score=57.33  Aligned_cols=167  Identities=17%  Similarity=0.193  Sum_probs=125.6

Q ss_pred             hCCCChhHHHHHH-HHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCc
Q 010080          218 MLPNKGSTVRTAA-WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV  296 (518)
Q Consensus       218 l~~~~~~~~~~a~-~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~  296 (518)
                      +.+.+..-+..|+ .+++++..|++         .....|-+++.+.+.|.++..-+-.-|...+...++..  +   -+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d---------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l---La   93 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED---------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--L---LA   93 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H---HH
Confidence            4455444444444 55678887753         24667788888888899998887777777777655221  1   12


Q ss_pred             hHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080          297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV  376 (518)
Q Consensus       297 ~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~  376 (518)
                      ++.+.+=| .++++.++..|+|+++-+=.      ..++       ..+++.+.+++.++++.||+.|+.++.++-.-++
T Consensus        94 vNti~kDl-~d~N~~iR~~AlR~ls~l~~------~el~-------~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~  159 (757)
T COG5096          94 VNTIQKDL-QDPNEEIRGFALRTLSLLRV------KELL-------GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK  159 (757)
T ss_pred             HHHHHhhc-cCCCHHHHHHHHHHHHhcCh------HHHH-------HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH
Confidence            45566666 58999999999999998632      2233       3589999999999999999999999999976554


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      +   .+-+.|.+..+..++.+.++.|..+|..++..+..
T Consensus       160 ~---l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         160 D---LYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             h---hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            4   34567888999999999999999999999999864

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.084  Score=52.54  Aligned_cols=243  Identities=15%  Similarity=0.184  Sum_probs=159.9

Q ss_pred             HhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCC---------chhhhHHHhcCchHHHHHHHccCCCc------cchh
Q 010080          250 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS---------NVATSLLVKSGVLQLLVERLATSNSL------QLLI  314 (518)
Q Consensus       250 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~---------~~~~~~~~~~g~~~~Lv~lL~~~~~~------~v~~  314 (518)
                      ....+++.|+.+|.|++.+|.....-.|..|++-+         ..-++.+++.++++.|++-+. .-+.      .-..
T Consensus       122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve-RLdEsvkeea~gv~  200 (536)
T KOG2734|consen  122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE-RLDESVKEEADGVH  200 (536)
T ss_pred             HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH-HhhhcchhhhhhhH
Confidence            45789999999999999999999999999998632         134677788899999887664 1122      2345


Q ss_pred             hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHH
Q 010080          315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL  392 (518)
Q Consensus       315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li  392 (518)
                      .++..+-|++.-.+.....+.+      +|.+..|+.-+...  -...+..|.-+++-+...+.+....+-.-+++..++
T Consensus       201 ~~L~vveNlv~~r~~~~~~~~e------~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL  274 (536)
T KOG2734|consen  201 NTLAVVENLVEVRPAICTEIVE------QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLL  274 (536)
T ss_pred             HHHHHHHHHHhccHHHHHHHHH------hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHH
Confidence            6788899999887776666654      46888777644332  224556677777777776666666666678888888


Q ss_pred             HHhc---CCC------hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHH
Q 010080          393 HLLS---TSP------FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME  463 (518)
Q Consensus       393 ~lL~---~~~------~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~  463 (518)
                      +-+.   ..+      .+.-.+-.-+||.+...+           +.....+...++....=++.. .......++++|.
T Consensus       275 ~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-----------~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd  342 (536)
T KOG2734|consen  275 RQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-----------ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLD  342 (536)
T ss_pred             hhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-----------hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHH
Confidence            8772   222      234455666777777653           223444455455444334433 3444567888888


Q ss_pred             HHHccCCCCcchhHHHhhchHHHHHHHhc-C---------CCHHHHHHHHHHHHhhcC
Q 010080          464 LVLRGMPNHEGTKLVEREDGIDAMERFQF-H---------ENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       464 ~il~~~~~~~~~~~ie~~ggl~~l~~L~~-~---------~~~~i~~~a~~il~~~f~  511 (518)
                      .++.+.+..+++..+-+.+|+..+-.+-. .         .-.+.-+....||-..|.
T Consensus       343 ~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  343 HAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            88876555567888888999998766532 2         223444556666666554

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.85  E-value=0.15  Score=55.52  Aligned_cols=260  Identities=15%  Similarity=0.108  Sum_probs=161.6

Q ss_pred             CCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHH
Q 010080          137 GSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA  215 (518)
Q Consensus       137 ~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~  215 (518)
                      ++.+....-++.-+.+++..-..  ..+. +.+|.++.+... +...|++.|.-++.++.+--..  +.=...-..+.++
T Consensus       248 d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~D-dqdsVr~~a~~~~~~l~~l~~~--~~d~~~~~~~~l~  322 (759)
T KOG0211|consen  248 DDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRD-DQDSVREAAVESLVSLLDLLDD--DDDVVKSLTESLV  322 (759)
T ss_pred             ccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhc-chhhHHHHHHHHHHHHHHhcCC--chhhhhhhhHHHH
Confidence            33455555577777788754332  3333 578888888876 5678999999999888752111  0022334577788


Q ss_pred             hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC-CchhhhHHHhc
Q 010080          216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKS  294 (518)
Q Consensus       216 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~  294 (518)
                      ......+..+.....-.++-++..-++..     ......+....++.++..+....+..-...++.. +.+....+...
T Consensus       323 ~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-----~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~  397 (759)
T KOG0211|consen  323 QAVEDGSWRVSYMVADKFSELSSAVGPSA-----TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDS  397 (759)
T ss_pred             HHhcChhHHHHHHHhhhhhhHHHHhcccc-----CcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchh
Confidence            88877777777666666666664432211     1224566677777766666655555444444432 11122333344


Q ss_pred             CchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080          295 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  374 (518)
Q Consensus       295 g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~  374 (518)
                      .+++.+-.+. .+.+..++......+.++..-.+  +...+.       -.+|.+...++...+.++....|.++.+-..
T Consensus       398 ~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~-------~llp~~~~~l~de~~~V~lnli~~ls~~~~v  467 (759)
T KOG0211|consen  398 SILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTIS-------ELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV  467 (759)
T ss_pred             hhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCcc-------ccChhhhhhcchhhHHHHHhhHHHHHHHHhc
Confidence            5567766666 35666666665555555543222  111222       3778888899999999999999999888654


Q ss_pred             CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          375 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       375 ~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      ++..--.......+|.+..+-......++.+..+.+--++..
T Consensus       468 ~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q  509 (759)
T KOG0211|consen  468 NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ  509 (759)
T ss_pred             cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh
Confidence            432222233445788888888777888999998888887763

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.85  E-value=0.72  Score=47.54  Aligned_cols=298  Identities=18%  Similarity=0.173  Sum_probs=167.1

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCc----HHHHHHcCCHHHHHHHhcCC----CC-hHHHHH-HHHHHHHHhcCC-hHHHHH
Q 010080           95 AMQKRVNALRELRRLLSRFEFPP----IETALKAGAIPVLVQCLAFG----SP-DEQLLE-AAWCLTNIAAGK-QEETKA  163 (518)
Q Consensus        95 ~~~~~~~a~~~lr~lls~~~~~~----~~~~i~~g~ip~Lv~~L~~~----~~-~~~~~e-A~~~L~nia~~~-~~~~~~  163 (518)
                      +.+.....+..+.+++.+.....    .....+..++|.+.+.....    .. +....+ +...+..+...- .+.-+.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            55666777888888777553322    33344566999998887432    11 122233 445555554332 222233


Q ss_pred             hc-CChHHHHH-----hhc--CC----CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-CChhHHHHHH
Q 010080          164 LL-PALPLLIA-----HLG--EK----SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAA  230 (518)
Q Consensus       164 v~-~~v~~Lv~-----lL~--~~----~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~  230 (518)
                      ++ .....++.     -+.  ++    .......-...+++.+-.+..-.    -....+..++.+..+ .+...+..++
T Consensus       136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~  211 (415)
T PF12460_consen  136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAAL  211 (415)
T ss_pred             HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHH
Confidence            33 24444430     000  00    01122222233444443322110    111255666666554 3566777777


Q ss_pred             HHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccC----ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc
Q 010080          231 WALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRA----DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA  305 (518)
Q Consensus       231 ~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~----d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~  305 (518)
                      .+++.|+ ++-+...  .  ...++..+..-+ ...    ......-..|...-+.-.......     ..+..|+.+|.
T Consensus       212 ~~la~Lv-NK~~~~~--~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~  281 (415)
T PF12460_consen  212 QLLASLV-NKWPDDD--D--LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLS  281 (415)
T ss_pred             HHHHHHH-cCCCChh--h--HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhC
Confidence            8888777 3322211  1  124455554444 222    234556667777666542222222     34567888874


Q ss_pred             cCCCccchhhhhhhhhhhhcCCCcc-------------cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhc
Q 010080          306 TSNSLQLLIPVLRSLGNLVAGDSST-------------ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA  372 (518)
Q Consensus       306 ~~~~~~v~~~al~~L~nl~~~~~~~-------------~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~  372 (518)
                       +  +++-..+.+.++-+....++.             .|.+.       ..++|.|++.....+...+....-+|+++.
T Consensus       282 -~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-------~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll  351 (415)
T PF12460_consen  282 -S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-------TQVLPKLLEGFKEADDEIKSNYLTALSHLL  351 (415)
T ss_pred             -C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-------HHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Confidence             3  566778888888887663322             12222       246777777777766668888899999999


Q ss_pred             cCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          373 AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       373 ~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      .+-|..+-.---..++|.|++.|..++.+++..+..+|..+...
T Consensus       352 ~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  352 KNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE  395 (415)
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            88765432211135899999999999999999999999999874

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.46  Score=54.40  Aligned_cols=316  Identities=15%  Similarity=0.119  Sum_probs=179.3

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHH
Q 010080          127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL  205 (518)
Q Consensus       127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~  205 (518)
                      |-+++++-+++....-...|+.-+.-|+...-+..+... ..||.|..+=.. ++..|+.....+.+.|..|+....+..
T Consensus       958 VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yD-P~~~Vq~aM~sIW~~Li~D~k~~vd~y 1036 (1702)
T KOG0915|consen  958 VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYD-PDKKVQDAMTSIWNALITDSKKVVDEY 1036 (1702)
T ss_pred             HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccC-CcHHHHHHHHHHHHHhccChHHHHHHH
Confidence            444555544433233345677777888765555555555 489999998877 789999988888888999876665554


Q ss_pred             HhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH----HHHhccCChhH---HHHHHHHHH
Q 010080          206 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI----LRHLKRADEEL---TTEVAWVVV  278 (518)
Q Consensus       206 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L----~~lL~~~d~~v---~~~a~~~L~  278 (518)
                      +. .++.-|+.-+.+....+++.+|.+|..|.++..   ..++   ..-+|-+    .+.+.+=.+.|   -.-++.+|+
T Consensus      1037 ~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~---~~~~---~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1037 LN-EILDELLVNLTSKEWRVREASCLALADLLQGRP---FDQV---KEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred             HH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC---hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 356667777777788999999999999998842   1111   2333333    33333222333   445677777


Q ss_pred             HhhcC--C---chhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHh
Q 010080          279 YLSAL--S---NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL  353 (518)
Q Consensus       279 ~L~~~--~---~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL  353 (518)
                      .|+-.  +   ...-+.+++ -++|.|.+-=.-+.-.+++..++.++-.++..........+       ..++|.|+..+
T Consensus      1110 Kl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-------~~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1110 KLCVRICDVTNGAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-------PKLIPLLLNAY 1181 (1702)
T ss_pred             HHHhhhcccCCcccHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-------hHHHHHHHHHc
Confidence            66631  1   111122221 23344332100144566788888888888877666554443       35777777776


Q ss_pred             ccChh-----------hhHHHHHHHHH-HhccCCH--HHHHHHHh-------CCCHHHHHHHhcCC-ChhHHHHHHHHHH
Q 010080          354 KSEHR-----------VLKKEAAWVLS-NIAAGSV--EHKQLIHS-------SEALALLLHLLSTS-PFDIKKEVAYVLG  411 (518)
Q Consensus       354 ~~~~~-----------~i~~~a~~~Ls-nl~~~~~--~~~~~li~-------~~~i~~Li~lL~~~-~~~v~~eA~~aL~  411 (518)
                      ..-.+           .+..+|.-.+. +++.++|  +.+..+++       ..++|.+++++..+ ....|.-++..++
T Consensus      1182 s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~ 1261 (1702)
T KOG0915|consen 1182 SELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFIS 1261 (1702)
T ss_pred             cccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHH
Confidence            55433           22333333332 2222332  11222221       13677777777543 3345555666666


Q ss_pred             HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      -++... ...-+|.     +.     ..+..++..+++.++.+.+..-.+...+++..
T Consensus      1262 ~L~~r~-~~emtP~-----sg-----Kll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1262 LLVQRL-GSEMTPY-----SG-----KLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred             HHHHHh-ccccCcc-----hh-----HHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence            665431 0001221     11     24666777777777777776666676666654

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.81  E-value=0.06  Score=55.22  Aligned_cols=129  Identities=10%  Similarity=0.105  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC
Q 010080          140 DEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML  219 (518)
Q Consensus       140 ~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~  219 (518)
                      +.++.|++.+++.++..+. ..+.+-.+|..|-.+|.+ +....+-.|+++|..|+...|+..   ..+  =+.+-.++.
T Consensus       278 emV~lE~Ar~v~~~~~~nv-~~~~~~~~vs~L~~fL~s-~rv~~rFsA~Riln~lam~~P~kv---~vc--N~evEsLIs  350 (898)
T COG5240         278 EMVFLEAARAVCALSEENV-GSQFVDQTVSSLRTFLKS-TRVVLRFSAMRILNQLAMKYPQKV---SVC--NKEVESLIS  350 (898)
T ss_pred             hhhhHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhhCCcee---eec--ChhHHHHhh
Confidence            5567899999988885431 111122467788888887 678899999999999998665421   111  123444555


Q ss_pred             CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080          220 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS  281 (518)
Q Consensus       220 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~  281 (518)
                      +.+..+   +++++..|......+. .+-  .-..||.+++=+.++-.-+..+++..|+.+-
T Consensus       351 d~Nr~I---styAITtLLKTGt~e~-idr--Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~F  406 (898)
T COG5240         351 DENRTI---STYAITTLLKTGTEET-IDR--LVNLIPSFVHDMSDGFKIIAIDALRSLSLLF  406 (898)
T ss_pred             cccccc---hHHHHHHHHHcCchhh-HHH--HHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence            555444   3444555543321111 110  1133344443333444456677777776655

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.74  E-value=0.087  Score=51.73  Aligned_cols=194  Identities=22%  Similarity=0.253  Sum_probs=117.5

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHh--cCC
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETAL--KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIA--AGK  157 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i--~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia--~~~  157 (518)
                      ++|...|..+.......+..|+..+.+++.....+  +.+-  ...+++.+.+.++.+... .+.-|+.++.-++  -|.
T Consensus        43 ~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~--d~v~~~~~tL~~~~~k~lkkg~~~-E~~lA~~~l~Ll~ltlg~  119 (309)
T PF05004_consen   43 DKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP--DFVEDRRETLLDALLKSLKKGKSE-EQALAARALALLALTLGA  119 (309)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHhhhcCC
Confidence            45777777666666889999999999999876432  2232  356788888888876653 3455666666665  233


Q ss_pred             hHHHHHhc-CChHHHHHhhcCCC-CHHHHHHHHHHHHhhhC---CChhhHHHHHhcCChhHHHh--hhC----------C
Q 010080          158 QEETKALL-PALPLLIAHLGEKS-SSPVAEQCAWALGNVAG---EGEEFRNVLLSQGALPPLAR--MML----------P  220 (518)
Q Consensus       158 ~~~~~~v~-~~v~~Lv~lL~~~~-~~~v~~~a~~~L~nla~---d~~~~r~~~~~~g~i~~L~~--ll~----------~  220 (518)
                      ......++ ...|.|...+...+ ...++..|+.||+-++.   ..+......++  .+..+..  ..+          .
T Consensus       120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence            34455666 58888888887633 46777888888887653   22222221111  1221111  111          1


Q ss_pred             CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          221 NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       221 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      ++..+...|+-+-+-|...- |...... .....+|.|..+|.++|.+|+..|--+|+-|..
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~-~~~~~~~-~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTL-PDSKLED-LLEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcC-CHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            13456655554434343221 1111111 124689999999999999999998888876654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.74  E-value=0.96  Score=47.33  Aligned_cols=288  Identities=18%  Similarity=0.184  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhh
Q 010080           96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHL  175 (518)
Q Consensus        96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL  175 (518)
                      ...+++|+..+++.+...+-.++..     +....-.++..+.+.+.+..+...|..+..++.......   =-.+...+
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~---R~~fF~~I   75 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLM---RAEFFRDI   75 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHH---HHHHHHHH
Confidence            4577888888888777654433322     333334566655556665556667777775544311110   01222223


Q ss_pred             cCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC---------------------------ChhHHHH
Q 010080          176 GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN---------------------------KGSTVRT  228 (518)
Q Consensus       176 ~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~---------------------------~~~~~~~  228 (518)
                      ..+..++....-+.+|..++.++...  ...+.++.|.|...|...                           +......
T Consensus        76 ~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (464)
T PF11864_consen   76 SDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD  153 (464)
T ss_pred             hcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence            33344444455556666666666555  225777888888776421                           1112222


Q ss_pred             HHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-
Q 010080          229 AAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-  306 (518)
Q Consensus       229 a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-  306 (518)
                      ..-.+.|+.+........+.  ..+.+..++.+-.. .+++....++-.|-.+.....      +-.+.++.++..|.. 
T Consensus       154 ll~~l~nviKfn~~~l~e~~--i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~------iP~~sl~~~i~vLCsi  225 (464)
T PF11864_consen  154 LLQFLVNVIKFNFNYLDEDE--ISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD------IPSESLSPCIEVLCSI  225 (464)
T ss_pred             HHHHHHHHHhcCCCCCCHHH--HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc------CChHHHHHHHHHHhhH
Confidence            23333333333211111111  12333333333221 112222222222222222100      001222344444431 


Q ss_pred             CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc--c----ChhhhHHHHHHHHHHhccCCHHHHH
Q 010080          307 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK--S----EHRVLKKEAAWVLSNIAAGSVEHKQ  380 (518)
Q Consensus       307 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~--~----~~~~i~~~a~~~Lsnl~~~~~~~~~  380 (518)
                      ++..+...++-+++.|++...-             .+..+..|..+|.  +    .+..+.+.|...++-+..+..++..
T Consensus       226 ~~~~~l~~~~w~~m~nL~~S~~-------------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~  292 (464)
T PF11864_consen  226 VNSVSLCKPSWRTMRNLLKSHL-------------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGY  292 (464)
T ss_pred             hcccccchhHHHHHHHHHcCcc-------------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCc
Confidence            2333566788889999985542             1346778888883  2    2346677899999988877633332


Q ss_pred             HHHhC---CCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          381 LIHSS---EALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       381 ~li~~---~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                      .-+..   -++|.+...|+.++..+-.+....+.++.
T Consensus       293 ~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  293 PSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             ceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            22222   27899999999888888888888888887

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.63  E-value=0.22  Score=54.79  Aligned_cols=247  Identities=17%  Similarity=0.204  Sum_probs=150.1

Q ss_pred             hhchHHHHHHHhcc-----CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc---cCCC----ccchhhhhh
Q 010080          251 VDGLLDAILRHLKR-----ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA---TSNS----LQLLIPVLR  318 (518)
Q Consensus       251 ~~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~---~~~~----~~v~~~al~  318 (518)
                      ..|++..++.++.+     .+.+.....+..|.+++. -..+.+.+++.|+++.|+..|.   ..+.    ..+....+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            45777777777763     344677777888888776 4678888999999999988774   2323    456666777


Q ss_pred             hhhhhhcCCCcccc----eeecc-CC-CchhhhHHHHHHHhccC----hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCH
Q 010080          319 SLGNLVAGDSSTIS----DVLVP-GH-GITDQVIAVLVKCLKSE----HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL  388 (518)
Q Consensus       319 ~L~nl~~~~~~~~~----~~i~~-G~-~~~~~~l~~L~~lL~~~----~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i  388 (518)
                      ++.-+.........    ..... |. .-...-+..|++.+.+.    ++.+....+.+|.+|+.|+.+..+.++++  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            77766644332111    00000 00 00123466667766654    57899999999999999999999999885  3


Q ss_pred             HHHHHHhcC-----CChhHHHHHHHHHHHhcCCCCC-CCCCchhHHHHHHHHHhcCchHHHHHhhccCCH--------HH
Q 010080          389 ALLLHLLST-----SPFDIKKEVAYVLGNLCVSPTE-GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADI--------EA  454 (518)
Q Consensus       389 ~~Li~lL~~-----~~~~v~~eA~~aL~nl~~~~~~-~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~--------~~  454 (518)
                      .+.++.=.-     .+..+.   +-+++.++.+-.. ..|     ..-.+.+++.|++...++.|...-|        +-
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G-----~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eW  343 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNG-----NRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEW  343 (802)
T ss_pred             HHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCch-----HHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHH
Confidence            333332211     122232   4444455443211 112     2445678899999999988775322        22


Q ss_pred             --------HHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH-hcCCCHHHHHHHHHHHHhhcC
Q 010080          455 --------ARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       455 --------~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L-~~~~~~~i~~~a~~il~~~f~  511 (518)
                              +..+|+.|.-+..+..   ..+.....+++..+..| |-....+|-..|..+|+..-.
T Consensus       344 k~~l~~psLp~iL~lL~GLa~gh~---~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  344 KEFLSRPSLPYILRLLRGLARGHE---PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHhcCCcHHHHHHHHHHHHhcCH---HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence                    2244555555444322   23444556777777776 334477899999999986544

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.62  E-value=0.49  Score=51.40  Aligned_cols=223  Identities=12%  Similarity=0.131  Sum_probs=146.0

Q ss_pred             cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchh
Q 010080          264 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD  343 (518)
Q Consensus       264 ~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~  343 (518)
                      +..|.+...+.|++++.+.......+..  .-.+...+..+..+..+.++..|++++...+.-  .-...       ...
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~-------~~p  529 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLS-------LQP  529 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccc-------cch
Confidence            5567777799999998886433222221  123455566665566677888899988887721  11121       235


Q ss_pred             hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh--cCCChhHHHHHHHHHHHhcCCCCCCC
Q 010080          344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL--STSPFDIKKEVAYVLGNLCVSPTEGE  421 (518)
Q Consensus       344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL--~~~~~~v~~eA~~aL~nl~~~~~~~~  421 (518)
                      +++..|.++....+..+-.-.+-+|+..+.-+++.. .-.++.+.|..+.+.  .+.|+.|...+--++-.++...... 
T Consensus       530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-  607 (1005)
T KOG2274|consen  530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-  607 (1005)
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-
Confidence            788888888877777777778888888888776654 345667889888887  3567777776666666655421111 


Q ss_pred             CCchhHHHHHHHHHhcCchHHHHHhhccCC----HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH-hcCCCH
Q 010080          422 GKPKLIQEHLVSLVGRGCLSGFIDLVRSAD----IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENE  496 (518)
Q Consensus       422 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d----~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L-~~~~~~  496 (518)
                      | |          ...-+||.|++.|..++    +..+..+++.|..++++.+.. -...+. +-.++++.++ .++++.
T Consensus       608 g-~----------m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p-L~~~l~-~~~FpaVak~tlHsdD~  674 (1005)
T KOG2274|consen  608 G-P----------MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP-LPNLLI-CYAFPAVAKITLHSDDH  674 (1005)
T ss_pred             c-c----------hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC-ccHHHH-HHHhHHhHhheeecCCh
Confidence            1 1          12347999999999877    778899999999999987652 222221 2234555443 556666


Q ss_pred             HHHHHHHHHHHhhcCc
Q 010080          497 DLRNMANGLVDKYFGE  512 (518)
Q Consensus       497 ~i~~~a~~il~~~f~~  512 (518)
                      +.-..|.+.+.-|.+.
T Consensus       675 ~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  675 ETLQNATECLRALISV  690 (1005)
T ss_pred             HHHHhHHHHHHHHHhc
Confidence            7777777777655443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.61  E-value=0.013  Score=46.69  Aligned_cols=65  Identities=12%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhHHHHHhc
Q 010080          144 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ  208 (518)
Q Consensus       144 ~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~  208 (518)
                      ...+.+|+|++..++..-+.+.  |++|.++..-.- ..+|-++|.|+||+.|++.++++++..+.+-
T Consensus         4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            4567899999999888888887  799999987533 3679999999999999999999998887653

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.56  E-value=1.2  Score=46.17  Aligned_cols=291  Identities=16%  Similarity=0.152  Sum_probs=154.3

Q ss_pred             HhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC
Q 010080          163 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP  242 (518)
Q Consensus       163 ~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~  242 (518)
                      ......|.|-.-|++ .-..|.-.++.++..++..+  .-+..++ ..+..|-.+|.++....+-.|+..|..|+.. .|
T Consensus       261 ~~~q~rpfL~~wls~-k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~-~P  335 (898)
T COG5240         261 ALLQLRPFLNSWLSD-KFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMK-YP  335 (898)
T ss_pred             HHHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhh-CC
Confidence            333445666666655 44678888888877776533  1112222 2466777888899999999999999999854 23


Q ss_pred             CchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhh
Q 010080          243 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN  322 (518)
Q Consensus       243 ~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~n  322 (518)
                      +.      ..-+=+-+-.++.+.+..+-..|.-+|..  .|.++.++.++..  ++.++.-+. .+-..+...|++.|++
T Consensus       336 ~k------v~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~~--I~sfvhD~S-D~FKiI~ida~rsLsl  404 (898)
T COG5240         336 QK------VSVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVNL--IPSFVHDMS-DGFKIIAIDALRSLSL  404 (898)
T ss_pred             ce------eeecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHHH--HHHHHHhhc-cCceEEeHHHHHHHHh
Confidence            21      12333445566666666665555444432  3566666665532  444444331 2222345677777777


Q ss_pred             hhcCCCcccceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChh
Q 010080          323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD  401 (518)
Q Consensus       323 l~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~  401 (518)
                      .....   .           ...+..|...|. .+....++.+.-+|+.+....|+-...     ++..|+..+.+.++ 
T Consensus       405 ~Fp~k---~-----------~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey-  464 (898)
T COG5240         405 LFPSK---K-----------LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY-  464 (898)
T ss_pred             hCcHH---H-----------HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch-
Confidence            64322   1           124455555443 344567777777777776655443332     34456666654432 


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhh
Q 010080          402 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVERE  481 (518)
Q Consensus       402 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~  481 (518)
                       -+.++..|+-+-..   +...|++ -.+++++         .+-+--.+.-+...|+.+|...--...+....+-+   
T Consensus       465 -~~I~vrIL~iLG~E---gP~a~~P-~~yvrhI---------yNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv---  527 (898)
T COG5240         465 -HQITVRILGILGRE---GPRAKTP-GKYVRHI---------YNRLILENNIVRSAAVQALSKFALNISDVVSPQSV---  527 (898)
T ss_pred             -hHHHHHHHHHhccc---CCCCCCc-chHHHHH---------HHHHHHhhhHHHHHHHHHHHHhccCccccccHHHH---
Confidence             23355555554332   1111211 1233332         22222233344455555554442222221111212   


Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080          482 DGIDAMERFQFHENEDLRNMANGLVDK  508 (518)
Q Consensus       482 ggl~~l~~L~~~~~~~i~~~a~~il~~  508 (518)
                        ...|..+.++.+++++++|.-.++.
T Consensus       528 --~~~lkRclnD~DdeVRdrAsf~l~~  552 (898)
T COG5240         528 --ENALKRCLNDQDDEVRDRASFLLRN  552 (898)
T ss_pred             --HHHHHHHhhcccHHHHHHHHHHHHh
Confidence              2346667788888888888776654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.53  E-value=0.044  Score=54.98  Aligned_cols=158  Identities=18%  Similarity=0.191  Sum_probs=85.5

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhC----CChhhHHHHHh-cC-ChhHHHhhhC---CCChhHHHHHHHHHHHhh
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAG----EGEEFRNVLLS-QG-ALPPLARMML---PNKGSTVRTAAWALSNLI  237 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~----d~~~~r~~~~~-~g-~i~~L~~ll~---~~~~~~~~~a~~~L~nL~  237 (518)
                      +...++..|.+ .....++.++|++|||..    .-|..+..--. .| .+..+++.-.   ..+..+..++..+|.|+.
T Consensus       434 aa~~il~sl~d-~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll  512 (728)
T KOG4535|consen  434 AANAILMSLED-KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL  512 (728)
T ss_pred             HHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence            44444455544 457889999999999963    11111111000 01 1122222111   224566777777777766


Q ss_pred             cCCC---CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHH-HhcCchHHHHHHHccCCCccch
Q 010080          238 KGPD---PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL-VKSGVLQLLVERLATSNSLQLL  313 (518)
Q Consensus       238 ~~~~---~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~-~~~g~~~~Lv~lL~~~~~~~v~  313 (518)
                      ..-.   +....+++ +......+....-...-.|+-++|.+++||..+..-..+.+ ...-+++.|..++.++.+.+++
T Consensus       513 Qvlq~i~~~~~~e~~-~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVR  591 (728)
T KOG4535|consen  513 QFLQPIEKPTFAEII-EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVR  591 (728)
T ss_pred             HHHHHhhhccHHHHH-HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEe
Confidence            4311   01111111 11111111122223445789999999999997644322222 1234678888888889999999


Q ss_pred             hhhhhhhhhhhcC
Q 010080          314 IPVLRSLGNLVAG  326 (518)
Q Consensus       314 ~~al~~L~nl~~~  326 (518)
                      +.|..+|..-.+.
T Consensus       592 i~AA~aL~vp~~r  604 (728)
T KOG4535|consen  592 IRAAAALSVPGKR  604 (728)
T ss_pred             ehhhhhhcCCCCc
Confidence            9999888865543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.52  E-value=0.27  Score=53.66  Aligned_cols=269  Identities=16%  Similarity=0.173  Sum_probs=167.8

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC-ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      .++.+..+++. ...+++..++.-...++.. +..++..+....++|.+-.+..+.+..+....+....++.--. |++.
T Consensus       356 ~~~~~~~l~~~-~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~-~k~~  433 (759)
T KOG0211|consen  356 LVPPVSNLLKD-EEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPIL-PKER  433 (759)
T ss_pred             chhhHHHHhcc-hhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccC-CcCc
Confidence            46666666665 4556666555544444431 2223344455556777777777777777766665555554211 1111


Q ss_pred             hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                        .  ....+|.+...+++.+++|+.+..|.++.+-...+..--.......++.++.+-. .....++...++.+--++.
T Consensus       434 --t--i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~-d~~wRvr~ail~~ip~la~  508 (759)
T KOG0211|consen  434 --T--ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAE-DLLWRVRLAILEYIPQLAL  508 (759)
T ss_pred             --C--ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhcc-chhHHHHHHHHHHHHHHHH
Confidence              1  3578888899999999999999999887665433322222334455677776542 3345666666666666553


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc--CCHHHHHHHHhCCCHHHHHHHhcCCChhHH
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLSTSPFDIK  403 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~--~~~~~~~~li~~~~i~~Li~lL~~~~~~v~  403 (518)
                      ...   ..+++      ...-+.+...+.+....+++.|+..+--++-  |..-.+     ...+|.++.....++..+|
T Consensus       509 q~~---~~~~~------~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~-----~~~i~k~L~~~~q~~y~~R  574 (759)
T KOG0211|consen  509 QLG---VEFFD------EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR-----LEEIPKLLAMDLQDNYLVR  574 (759)
T ss_pred             hhh---hHHhh------HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH-----HHhhHHHHHHhcCcccchh
Confidence            322   11221      2344555556666667888888887777764  321122     2357777777777788899


Q ss_pred             HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       404 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      ...+.+|.-++.-.    |         +.+.....++.+..+..++.+.+...++..+..++...
T Consensus       575 ~t~l~si~~la~v~----g---------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L  627 (759)
T KOG0211|consen  575 MTTLFSIHELAEVL----G---------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL  627 (759)
T ss_pred             hHHHHHHHHHHHHh----c---------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence            88888887765431    2         23344557899999999999999999999999888754

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.1  Score=55.08  Aligned_cols=175  Identities=18%  Similarity=0.168  Sum_probs=109.6

Q ss_pred             chHHHHHHHhccCChhHHHHHHHH--HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcc
Q 010080          253 GLLDAILRHLKRADEELTTEVAWV--VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST  330 (518)
Q Consensus       253 ~~l~~L~~lL~~~d~~v~~~a~~~--L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~  330 (518)
                      ++=|.+-+++.+.|+-++..-..+  +.|...+++         +++..|+..-.++.+.+|+..|.-+||-++..+++ 
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-  588 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-  588 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---------hhHHHhhcccccccchHHHHHHHHHheeeEecChh-
Confidence            445666777888887777665444  456555443         55666666644577889999999999999887764 


Q ss_pred             cceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHH
Q 010080          331 ISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV  409 (518)
Q Consensus       331 ~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~a  409 (518)
                                    .+|..+.+|. +.++.||..|+.+|+-.|+|+-...       .+..|--+..+...-||+-|+.+
T Consensus       589 --------------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa  647 (929)
T KOG2062|consen  589 --------------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIA  647 (929)
T ss_pred             --------------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHH
Confidence                          4455566664 5678999999999999998762211       12223333345555699999999


Q ss_pred             HHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHH-HHHHHHHHHHHHccC
Q 010080          410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA-ARLGLQFMELVLRGM  469 (518)
Q Consensus       410 L~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~-~~~~l~~l~~il~~~  469 (518)
                      ++-+....++. ..|+          -.|+.+.|...+..+..+. .+...-.-+-|+..+
T Consensus       648 ~amIm~Q~t~~-~~pk----------v~~frk~l~kvI~dKhEd~~aK~GAilAqGildaG  697 (929)
T KOG2062|consen  648 LAMIMIQQTEQ-LCPK----------VNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAG  697 (929)
T ss_pred             HHHHHHhcccc-cCch----------HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcC
Confidence            98886543211 1121          1244556667776655543 333333334455544

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.44  E-value=0.64  Score=50.53  Aligned_cols=308  Identities=14%  Similarity=0.091  Sum_probs=163.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCC-CCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHH
Q 010080           94 GAMQKRVNALRELRRLLSRF-EFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLL  171 (518)
Q Consensus        94 ~~~~~~~~a~~~lr~lls~~-~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~L  171 (518)
                      .-|.....|...+-++.+.. .+++...    -.+...+..+..+.++-....|..+++..++  ........ +.+..|
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~----~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L  535 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSSTVINPQLLQ----HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL  535 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhhccchhHHH----HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence            34445555665555554432 1222211    1234445555544444454557777766662  11122222 355666


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC--CCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080          172 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--PNKGSTVRTAAWALSNLIKGPDPKPATELI  249 (518)
Q Consensus       172 v~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i  249 (518)
                      +++... ...++--..+.+|+-.+.-++++.. -.+.-+.|..+.+..  ++++.+...+--++-.|+.......  .+ 
T Consensus       536 ~qlas~-~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g--~m-  610 (1005)
T KOG2274|consen  536 LQLASK-SSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG--PM-  610 (1005)
T ss_pred             HHHccc-ccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc--ch-
Confidence            666665 5678888888999999887766543 345556777666543  4577666666666666665321111  12 


Q ss_pred             HhhchHHHHHHHhccCC----hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          250 KVDGLLDAILRHLKRAD----EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       250 ~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                       ....+|.|++.+..++    .....-++-.|.-+.++.+.-....+-.-++|.+.+....+.+..+...+--||..+..
T Consensus       611 -~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  611 -QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             -HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence             3578999999998666    45555555666656664333333233334677777766556666777777777777766


Q ss_pred             CCCcccceeec-cCCCchhhhHHHHHHHhccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-cCCChhH
Q 010080          326 GDSSTISDVLV-PGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDI  402 (518)
Q Consensus       326 ~~~~~~~~~i~-~G~~~~~~~l~~L~~lL~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v  402 (518)
                      .+.+|+..--+ .|+. --.++.++.++|+.... ..-..+-..+..|+..-+.....-++. ++...+.-| +.....+
T Consensus       690 ~~~eq~~t~~~e~g~~-~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsv  767 (1005)
T KOG2274|consen  690 VTLEQLLTWHDEPGHN-LWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSV  767 (1005)
T ss_pred             cCHHHHHhhccCCCcc-HHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHH
Confidence            65544432222 2211 11356666777754322 211223333334433322222222221 222333333 4455566


Q ss_pred             HHHHHHHHHHhcC
Q 010080          403 KKEVAYVLGNLCV  415 (518)
Q Consensus       403 ~~eA~~aL~nl~~  415 (518)
                      -..-..+++++..
T Consensus       768 iQsLi~VfahL~~  780 (1005)
T KOG2274|consen  768 IQSLIMVFAHLVH  780 (1005)
T ss_pred             HHHHHHHHHHHhh
Confidence            6666677777655

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.36  E-value=0.0088  Score=47.61  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=62.2

Q ss_pred             hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080          315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  394 (518)
Q Consensus       315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l  394 (518)
                      -++.+|+.++.+-.......++       .++++++..+.++++.||..||-+|.|++......+-.-+ ..+++.|..+
T Consensus         5 ggli~Laa~ai~l~~~~~~~l~-------~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl   76 (97)
T PF12755_consen    5 GGLIGLAAVAIALGKDISKYLD-------EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKL   76 (97)
T ss_pred             HHHHHHHHHHHHchHhHHHHHH-------HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            3455555555443333444443       5899999999999999999999999999865433222111 2488899999


Q ss_pred             hcCCChhHHHHHHHHHHHh
Q 010080          395 LSTSPFDIKKEVAYVLGNL  413 (518)
Q Consensus       395 L~~~~~~v~~eA~~aL~nl  413 (518)
                      +.+.++.||..| +.|-++
T Consensus        77 ~~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   77 SADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             HcCCchhHHHHH-HHHHHH
Confidence            999999988776 444443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=2.2  Score=47.05  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCC
Q 010080          101 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSS  180 (518)
Q Consensus       101 ~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~  180 (518)
                      ..+..+...|.+.  .|.....+.=+++.+...++++. --++-.|+|.++.+++-+-..-.-...++....+.|.++.+
T Consensus       440 ~~vgsl~~~L~K~--s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~  516 (1010)
T KOG1991|consen  440 RMVGSLASILLKK--SPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNE  516 (1010)
T ss_pred             HHHHHHHHHHccC--CchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCc
Confidence            3344444545443  34334444444555555555433 23556699999999954322222222456666666664467


Q ss_pred             HHHHHHHHHHHHhhhCCChhhHHHHHhc--CChhHHHhhhC
Q 010080          181 SPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMML  219 (518)
Q Consensus       181 ~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~ll~  219 (518)
                      ..|+-.|+-||.-+..+.+....++-.+  +.+..|+++.+
T Consensus       517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n  557 (1010)
T KOG1991|consen  517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN  557 (1010)
T ss_pred             CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence            8899999999999988665443433332  23444444444

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.31  E-value=0.067  Score=48.07  Aligned_cols=92  Identities=24%  Similarity=0.252  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhch-HHHH
Q 010080          180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGL-LDAI  258 (518)
Q Consensus       180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~-l~~L  258 (518)
                      ++.++..++-++|-++.-.+..-     ...+|.+...|.++++.++++|+.+|+.|....       ++...|- +..+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-------~ik~k~~l~~~~   68 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-------MIKVKGQLFSRI   68 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-------ceeehhhhhHHH
Confidence            47899999999999987544332     235788999999999999999999999998653       2222343 4788


Q ss_pred             HHHhccCChhHHHHHHHHHHHhhcC
Q 010080          259 LRHLKRADEELTTEVAWVVVYLSAL  283 (518)
Q Consensus       259 ~~lL~~~d~~v~~~a~~~L~~L~~~  283 (518)
                      +.++.++|++|+..|..++..+...
T Consensus        69 l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   69 LKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999874

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.28  E-value=0.2  Score=53.40  Aligned_cols=65  Identities=22%  Similarity=0.257  Sum_probs=47.1

Q ss_pred             hHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       345 ~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                      .+..+.+.+.=++..+|..|.-++.++.++++.-..     .+.-.|.+.+.+.|..+|..|.+.+.++-
T Consensus       467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            444555555556678899999999999866533222     24445677778899999999999999986

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.41  Score=52.94  Aligned_cols=248  Identities=16%  Similarity=0.158  Sum_probs=142.1

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhhcCCCCCc
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKP  244 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~  244 (518)
                      ..+..|+.-|++ .+..|+-.|+..+|.++...|    ..+...+|...+.++... +....-.++-+|..|+...--.|
T Consensus       341 ~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rlp----~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRLP----PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccC-CcchhhHHHHHHHHHHHccCc----HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            356666677766 678999999999999998655    122222445555655533 46777899999999997532222


Q ss_pred             hhhHHHhhchHHHHHHHhccCC--------hhHHHHHHHHHHHhhcC-CchhhhHHHhcCchHHH-HHHHccCCCccchh
Q 010080          245 ATELIKVDGLLDAILRHLKRAD--------EELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLL-VERLATSNSLQLLI  314 (518)
Q Consensus       245 ~~~~i~~~~~l~~L~~lL~~~d--------~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~L-v~lL~~~~~~~v~~  314 (518)
                      .  .  ...++|.+++-|..++        ..|+..||.++..+++. ++...+-+.. .+.+.| ...+ -+.+..++.
T Consensus       416 s--~--l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~Al-FDrevncRR  489 (1133)
T KOG1943|consen  416 S--L--LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVAL-FDREVNCRR  489 (1133)
T ss_pred             H--H--HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHh-cCchhhHhH
Confidence            1  2  2478888888776443        34666665555555543 2222222211 112222 2222 356777788


Q ss_pred             hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080          315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  394 (518)
Q Consensus       315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l  394 (518)
                      .|..++...+-...+.     -       .+++. +...+.-....+..+...++--.+..+..++.++++     |+.-
T Consensus       490 AAsAAlqE~VGR~~n~-----p-------~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~  551 (1133)
T KOG1943|consen  490 AASAALQENVGRQGNF-----P-------HGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTK  551 (1133)
T ss_pred             HHHHHHHHHhccCCCC-----C-------Cchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhc
Confidence            8877777655321111     0       12221 111122222344444555555555555666555543     2222


Q ss_pred             -hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHH
Q 010080          395 -LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR  456 (518)
Q Consensus       395 -L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~  456 (518)
                       +.+=|..+|.-|+|+|.+++..      .        -.....+.++++++...++|.....
T Consensus       552 Kv~HWd~~irelaa~aL~~Ls~~------~--------pk~~a~~~L~~lld~~ls~~~~~r~  600 (1133)
T KOG1943|consen  552 KVCHWDVKIRELAAYALHKLSLT------E--------PKYLADYVLPPLLDSTLSKDASMRH  600 (1133)
T ss_pred             ccccccHHHHHHHHHHHHHHHHh------h--------HHhhcccchhhhhhhhcCCChHHhh
Confidence             5566888999999999998652      1        2334557788888887777776544

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.16  E-value=0.015  Score=47.68  Aligned_cols=69  Identities=23%  Similarity=0.318  Sum_probs=58.2

Q ss_pred             chHHHHHhh-ccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080          439 CLSGFIDLV-RSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  509 (518)
Q Consensus       439 ~i~~L~~lL-~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~  509 (518)
                      ++..|+++| .+.|+.++.+|+.=|..+.+..|+  ++..+++.|+-+.+-.|..|+|++|+..|..-+.++
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~--gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN--GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG--GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChh--HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            688899999 456888899999999999988765  578889999999999999999999999997777654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.15  E-value=0.11  Score=52.32  Aligned_cols=185  Identities=17%  Similarity=0.166  Sum_probs=107.5

Q ss_pred             CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC---CCCCchhhHHHhh-chH
Q 010080          180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG---PDPKPATELIKVD-GLL  255 (518)
Q Consensus       180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~---~~~~~~~~~i~~~-~~l  255 (518)
                      +.-++..|.++++-+.-+..-..+......+...++..|.+..-..+..+.|+++|+...   +-|.+....-... -.+
T Consensus       404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll  483 (728)
T KOG4535|consen  404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL  483 (728)
T ss_pred             HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH
Confidence            444677777787777654333334444445566666666666778899999999998753   2222211110111 122


Q ss_pred             HHHHHHhc--c-CChhHHHHHHHHHHHhhcCCchhhhHHHhc-------CchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          256 DAILRHLK--R-ADEELTTEVAWVVVYLSALSNVATSLLVKS-------GVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       256 ~~L~~lL~--~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~-------g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                      ..+.+.-.  + ....|..++..+|.++..    ..+.+.+.       |....+..........+|+..+|.++||+..
T Consensus       484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk  559 (728)
T KOG4535|consen  484 LKMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK  559 (728)
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence            22222222  1 234688888888888774    22222222       1122222211123456889999999999997


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHHHHHHhcc
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAA  373 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~  373 (518)
                      +.....+..-     +...+++.|..++. +.+-+||..|+.+|+--..
T Consensus       560 n~a~~lq~~~-----wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  560 NPALPLQTAP-----WASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             CccccccCCC-----chHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            7643222111     12357888888885 4567999999999987654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=1.3  Score=50.86  Aligned_cols=350  Identities=16%  Similarity=0.149  Sum_probs=168.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHh-c-CCCChHHHHH----HHHHHHHHhcC-
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL-A-FGSPDEQLLE----AAWCLTNIAAG-  156 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L-~-~~~~~~~~~e----A~~~L~nia~~-  156 (518)
                      +..++.++.+..--.+..++-+|++++...+.   +.+.+  -+|.+-..+ . .++-.+-+++    ++.+|+.++-. 
T Consensus      1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~---~~~~e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPF---DQVKE--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHcCCCh---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45566777777777888999999999887543   34443  344443333 2 2333333444    45666666521 


Q ss_pred             ----ChHHHHHhc-CChHHHHHh-hcCCCCHHHHHHHHHHHHhhhCCChh-hHHHHHhcCChhHHHhhhCCCChhHHHHH
Q 010080          157 ----KQEETKALL-PALPLLIAH-LGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTA  229 (518)
Q Consensus       157 ----~~~~~~~v~-~~v~~Lv~l-L~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~ll~~~~~~~~~~a  229 (518)
                          +....+.++ .++|.|+.- ..+ .-.+++..++.++..++..+.. .+..+  ...||.|+.....-.+.+.-..
T Consensus      1116 ~d~~~~~~~~~~l~~iLPfLl~~gims-~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDEGIMS-KVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred             cccCCcccHHHHHHHHHHHHhccCccc-chHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHH
Confidence                111222333 367777752 123 5689999999999999875433 11111  1234555555443333332222


Q ss_pred             HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCch-----hhhHHH---------h-c
Q 010080          230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV-----ATSLLV---------K-S  294 (518)
Q Consensus       230 ~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~-----~~~~~~---------~-~  294 (518)
                      .-=+.|.-...-...........+...++-.++++-|.+++.+..--+..+.+++-.     .+..++         + .
T Consensus      1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT 1272 (1702)
T ss_pred             HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC
Confidence            111122111000000001112234445555666666666666655555555543210     011110         0 0


Q ss_pred             C----chHHHHHHHccCCCccchhhhhhhhhhhhcCCC-cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHH
Q 010080          295 G----VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS  369 (518)
Q Consensus       295 g----~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Ls  369 (518)
                      .    .+..+...+ .+.++.++.....++|.++.... ++.+.           .+..+...+.-+.+..++-+|.+++
T Consensus      1273 P~sgKll~al~~g~-~dRNesv~kafAsAmG~L~k~Ss~dq~qK-----------Lie~~l~~~l~k~es~~siscatis 1340 (1702)
T KOG0915|consen 1273 PYSGKLLRALFPGA-KDRNESVRKAFASAMGYLAKFSSPDQMQK-----------LIETLLADLLGKDESLKSISCATIS 1340 (1702)
T ss_pred             cchhHHHHHHhhcc-ccccHHHHHHHHHHHHHHHhcCChHHHHH-----------HHHHHHHHHhccCCCccchhHHHHH
Confidence            1    122222222 24556667777778888875443 34443           4444444444444555588999999


Q ss_pred             HhccCCHHHHHHHHhCCCHHHHHHHhcCCC-hhHH--HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHh
Q 010080          370 NIAAGSVEHKQLIHSSEALALLLHLLSTSP-FDIK--KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL  446 (518)
Q Consensus       370 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~-~~v~--~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~l  446 (518)
                      ||+....+..+--.+ -++|. +-+-.+.+ ...+  .+=.|  ..++.+.   .|.        ..+....++-.+|.-
T Consensus      1341 ~Ian~s~e~Lkn~as-aILPL-iFLa~~ee~Ka~q~Lw~dvW--~e~vsgg---agt--------vrl~~~eiLn~icen 1405 (1702)
T KOG0915|consen 1341 NIANYSQEMLKNYAS-AILPL-IFLAMHEEEKANQELWNDVW--AELVSGG---AGT--------VRLYLLEILNLICEN 1405 (1702)
T ss_pred             HHHHhhHHHHHhhHH-HHHHH-HHHHHhHHHHHHHHHHHHHH--HHhCCCC---cch--------hhhhHHHHHHHHHHH
Confidence            987655443332222 14444 33333322 1111  11112  2222211   111        223333455555555


Q ss_pred             hccCC-HHHHHHHHHHHHHHHcc
Q 010080          447 VRSAD-IEAARLGLQFMELVLRG  468 (518)
Q Consensus       447 L~~~d-~~~~~~~l~~l~~il~~  468 (518)
                      ..+++ ..+...+..++..+...
T Consensus      1406 i~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1406 ITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred             hccchHHHHHHHHHHHHHHHccc
Confidence            44444 56666777777666543

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.07  E-value=1  Score=45.18  Aligned_cols=224  Identities=13%  Similarity=0.088  Sum_probs=153.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC----CC----CcHHHHHHcCCHHHHHHHhcC--CCChH---HHHHHH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRF----EF----PPIETALKAGAIPVLVQCLAF--GSPDE---QLLEAA  147 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~----~~----~~~~~~i~~g~ip~Lv~~L~~--~~~~~---~~~eA~  147 (518)
                      +..+.+++..+.++|.+.-+..+.-++.+-..+    ..    .-++..++.++++.|++-+..  .+..+   -+..+.
T Consensus       124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            345667777788888888888888888854322    11    234677888999999998863  12111   124467


Q ss_pred             HHHHHHhcCChHHHHHhc--CChHHHHHhhc-CCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC-----
Q 010080          148 WCLTNIAAGKQEETKALL--PALPLLIAHLG-EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-----  219 (518)
Q Consensus       148 ~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~-~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~-----  219 (518)
                      ..+-|+..-.++....++  |.+..|+.-+. ..+-..-...|..+|.-+-.++.+.+..+-.-.++..+++-+.     
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence            778888877777777766  56777776443 3234456778888999888888889999999999999988764     


Q ss_pred             CC----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc--hhhhHHHh
Q 010080          220 PN----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN--VATSLLVK  293 (518)
Q Consensus       220 ~~----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~--~~~~~~~~  293 (518)
                      .+    ..++.++..-+|+.+....   ..++......++....-+++ .....+..++.+|-+...|++  +++.-+++
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~---~nr~~Fl~~EGlqLm~Lmlr-~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe  359 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAP---ANRERFLKGEGLQLMNLMLR-EKKVSRGSALKVLDHAMFGPEGTPNCNKFVE  359 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcCh---hhhhhhhccccHHHHHHHHH-HHHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            11    2456677777777666542   23444444556654443343 355667889999999888766  67777778


Q ss_pred             cCchHHHHHHHccCC
Q 010080          294 SGVLQLLVERLATSN  308 (518)
Q Consensus       294 ~g~~~~Lv~lL~~~~  308 (518)
                      .+++..+..++++.+
T Consensus       360 ~lGLrtiF~~FMk~p  374 (536)
T KOG2734|consen  360 ILGLRTIFPLFMKTP  374 (536)
T ss_pred             HHhHHHHHHHHhhCc
Confidence            888888877776433

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.04  E-value=0.1  Score=46.79  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 010080          357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG  436 (518)
Q Consensus       357 ~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~  436 (518)
                      ++.+|..+.-+++-++...+..+..     .+|.+...|.++++.||+.|+.+|+++....               ++.-
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---------------~ik~   60 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILED---------------MIKV   60 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---------------ceee
Confidence            4678999999999998766554432     5788999999999999999999999997631               1222


Q ss_pred             cCc-hHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080          437 RGC-LSGFIDLVRSADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       437 ~g~-i~~L~~lL~~~d~~~~~~~l~~l~~il~~  468 (518)
                      .|- +..+..+|.++|+++...|..++..+...
T Consensus        61 k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   61 KGQLFSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            233 37778888999999999999999998875

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.04  E-value=3.5  Score=46.45  Aligned_cols=200  Identities=15%  Similarity=0.164  Sum_probs=112.6

Q ss_pred             HHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH-HH
Q 010080          300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV-EH  378 (518)
Q Consensus       300 Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~-~~  378 (518)
                      ++....++.+..++..+.++|..++....... .+..    ....+...|..-+++.....++..+-+|.-|....+ ++
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~-~~~q----~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~  732 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEG-LVEQ----RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEH  732 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcCCchhh-HHHH----HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHH
Confidence            33444345577889999999999998732211 1110    001244445555556667889999999999987655 33


Q ss_pred             HHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc--CCCCCCCCCc-h-hHHHHHHHHHhc-----------------
Q 010080          379 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC--VSPTEGEGKP-K-LIQEHLVSLVGR-----------------  437 (518)
Q Consensus       379 ~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~--~~~~~~~~~~-~-~~~~~~~~l~~~-----------------  437 (518)
                      .. ++.. .||-++-.++..+...++.|.-+|.+++  .....-|..| . -+.+.+. ++..                 
T Consensus       733 ~~-~i~k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~-~Isagl~gd~~~~~as~Ivai  809 (1176)
T KOG1248|consen  733 CD-LIPK-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLS-IISAGLVGDSTRVVASDIVAI  809 (1176)
T ss_pred             HH-HHHH-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHH-HHHhhhcccHHHHHHHHHHHH
Confidence            33 3333 3444444447778888888888888777  2111111122 0 0101110 1111                 


Q ss_pred             -----------------CchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHH
Q 010080          438 -----------------GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRN  500 (518)
Q Consensus       438 -----------------g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~  500 (518)
                                       +++..++..|.+..+++...|+.++..+....+..--....++  -+..+-.|.+..+-.++.
T Consensus       810 ~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~--LL~sll~ls~d~k~~~r~  887 (1176)
T KOG1248|consen  810 THILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEE--LLPSLLALSHDHKIKVRK  887 (1176)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHH--HHHHHHHHHHhhhHHHHH
Confidence                             2466666677788888888888888888765543111111111  345555555555666666


Q ss_pred             HHHHHHHhh
Q 010080          501 MANGLVDKY  509 (518)
Q Consensus       501 ~a~~il~~~  509 (518)
                      +...+++++
T Consensus       888 Kvr~LlekL  896 (1176)
T KOG1248|consen  888 KVRLLLEKL  896 (1176)
T ss_pred             HHHHHHHHH
Confidence            666555543

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.99  E-value=0.16  Score=44.00  Aligned_cols=123  Identities=10%  Similarity=0.111  Sum_probs=94.1

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCC-----hHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCC-CHHHHHHHHHH
Q 010080          118 IETALKAGAIPVLVQCLAFGSP-----DEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKS-SSPVAEQCAWA  190 (518)
Q Consensus       118 ~~~~i~~g~ip~Lv~~L~~~~~-----~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~-~~~v~~~a~~~  190 (518)
                      ..+++..|+++.|+.++..+..     ......++.++.++-.+..-.-+.+- ..|...+.+...+. +..+.+.|+..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            3678999999999999986552     23334477777777754332233222 36777777776644 68999999999


Q ss_pred             HHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 010080          191 LGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP  240 (518)
Q Consensus       191 L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~  240 (518)
                      |-++...++.....+.+.=-++.|+.+|+.++..++.++.-.+-.|....
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA  133 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA  133 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence            99999988888888888888999999999999999999998888777653

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.94  E-value=0.021  Score=46.86  Aligned_cols=71  Identities=15%  Similarity=0.212  Sum_probs=60.2

Q ss_pred             hhHHHHHHHh-ccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          344 QVIAVLVKCL-KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       344 ~~l~~L~~lL-~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                      .++..|+.+| .+.++.+..-||.=|+.++...|.-+..+-+.|+-..++++|.++|++||++|+.|+.-+.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            5889999999 4557888888999999999888877777777899999999999999999999999987664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.81  E-value=0.097  Score=55.90  Aligned_cols=201  Identities=13%  Similarity=0.103  Sum_probs=129.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHH
Q 010080           94 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLL  171 (518)
Q Consensus        94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~L  171 (518)
                      +.+..++.+...|.-.++......      ..+++.+...++.+..-...+|++.+++|+++.+...++.++  -+++.+
T Consensus       516 q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~i  589 (748)
T KOG4151|consen  516 QFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKI  589 (748)
T ss_pred             hchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhh
Confidence            445666666666663244433332      245667777766544333458999999999998888888876  366766


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHh-cCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 010080          172 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS-QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK  250 (518)
Q Consensus       172 v~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~  250 (518)
                      -.++.. +++-++..++..+.|+....--+...+.+ ...++.....+..........++.++..+..... ..+..+..
T Consensus       590 e~~~~e-e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~-n~c~~~~~  667 (748)
T KOG4151|consen  590 EELMTE-ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVE-NHCSRILE  667 (748)
T ss_pred             HHHhhc-ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcch-hhhhhHHH
Confidence            666655 78999999999999999844444445555 3445555555555555555666655554443221 11221223


Q ss_pred             hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHH
Q 010080          251 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE  302 (518)
Q Consensus       251 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~  302 (518)
                      .......+..++.+++.+++...+....++.....+....++...+...+..
T Consensus       668 ~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~  719 (748)
T KOG4151|consen  668 LLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG  719 (748)
T ss_pred             hhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence            4567788899999999999999888888877655555565655555554443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.73  E-value=0.048  Score=40.62  Aligned_cols=64  Identities=17%  Similarity=0.272  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcC
Q 010080          144 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG  209 (518)
Q Consensus       144 ~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g  209 (518)
                      +.|+|++.++++... ....+.  +.++.++++..+++...+|-.|.++|+-|+. ..+..+.+.+.|
T Consensus         5 KaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    5 KAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            569999999998543 333333  5999999999888889999999999999998 667777776665

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.56  E-value=0.12  Score=55.85  Aligned_cols=187  Identities=19%  Similarity=0.200  Sum_probs=124.9

Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH--------HH----hcCChhHHHhhhCCCChhHHHHHHHHHHH
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV--------LL----SQGALPPLARMMLPNKGSTVRTAAWALSN  235 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~--------~~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~n  235 (518)
                      ...|+.+|+.   +++-..++.++.-+..|++..+..        +.    -..++|.|++.+.......+.+...+|++
T Consensus       817 a~klld~Ls~---~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSG---PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCC---ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            3345555543   456667777888787777643321        11    23578889988886667777888888888


Q ss_pred             hhcCCCCCchhhHHH--hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC---c
Q 010080          236 LIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS---L  310 (518)
Q Consensus       236 L~~~~~~~~~~~~i~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~---~  310 (518)
                      +..+ .|++   .+.  ....+|.|++.|.-+|..++..+..++.-+..-...-...-+ .-++|.+..+= .+++   .
T Consensus       894 Vl~~-vP~~---vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls-~~~~n~~~  967 (1030)
T KOG1967|consen  894 VLTN-VPKQ---VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLS-SDNDNNMM  967 (1030)
T ss_pred             HHhc-CCHH---hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcC-CCCCcchh
Confidence            8753 3432   221  246788888888999999999999999887764332222222 23456666543 2333   4


Q ss_pred             cchhhhhhhhhhhhcCCCc-ccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHH
Q 010080          311 QLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN  370 (518)
Q Consensus       311 ~v~~~al~~L~nl~~~~~~-~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsn  370 (518)
                      .++..|+.+|+-+....+. .....       ...++..|.+.|.+++.-||++|..+=.+
T Consensus       968 ~VR~~ALqcL~aL~~~~P~~~l~~f-------r~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  968 VVREDALQCLNALTRRLPTKSLLSF-------RPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHHHHHHHHhccCCCcccccc-------cHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence            5788999999999874432 33322       24689999999999999999999876443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.51  E-value=0.74  Score=48.40  Aligned_cols=123  Identities=17%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHH
Q 010080          180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL  259 (518)
Q Consensus       180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~  259 (518)
                      +...+.-|+..+.....+.|...+.     +|..++.|+..++..++..|+..|..+|+.. +.    .  ...+..+|+
T Consensus        35 ~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~----~--v~kvaDvL~  102 (556)
T PF05918_consen   35 SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PE----H--VSKVADVLV  102 (556)
T ss_dssp             -HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-------HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HH----H--HhHHHHHHH
Confidence            4556666666666666666665544     3445666666778999999999999999763 22    3  357888999


Q ss_pred             HHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc--cCCCccchhhhhhhhhh
Q 010080          260 RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA--TSNSLQLLIPVLRSLGN  322 (518)
Q Consensus       260 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~--~~~~~~v~~~al~~L~n  322 (518)
                      ++|.++++.-...+=++|..|...++        .+.+..+...+.  ...+..++..++..|..
T Consensus       103 QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen  103 QLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            99999998888888888877775332        223333433332  13455677777777753

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.50  E-value=0.022  Score=34.76  Aligned_cols=29  Identities=24%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             hHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080          345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAA  373 (518)
Q Consensus       345 ~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~  373 (518)
                      ++|.+.+++.++++.||..|+++|++++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.48  E-value=0.018  Score=35.07  Aligned_cols=29  Identities=28%  Similarity=0.489  Sum_probs=25.7

Q ss_pred             CHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          387 ALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       387 ~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      ++|.+++++++++++||..|+++|..++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.44  E-value=0.082  Score=57.19  Aligned_cols=148  Identities=13%  Similarity=0.161  Sum_probs=106.9

Q ss_pred             hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh--cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCc
Q 010080          252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS  329 (518)
Q Consensus       252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~  329 (518)
                      ..++|.|++.+...+......-.-+|+++..+-+.  +.+..  ..++|.|++.| +.++..++..+++++.-+......
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~t  942 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESET  942 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccc
Confidence            47889999999866777788888888888875442  33322  34677888888 588989989999999988766554


Q ss_pred             ccceeeccCCCchhhhHHHHHHHhccCh---hhhHHHHHHHHHHhccCCH-HHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080          330 TISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSV-EHKQLIHSSEALALLLHLLSTSPFDIKKE  405 (518)
Q Consensus       330 ~~~~~i~~G~~~~~~~l~~L~~lL~~~~---~~i~~~a~~~Lsnl~~~~~-~~~~~li~~~~i~~Li~lL~~~~~~v~~e  405 (518)
                      -...-++       .++|.+..+=.+.+   ..+|..|..++.-|+..-| ..+... ...++..|+..|.+..-.||+|
T Consensus       943 L~t~~~~-------Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k~LdDkKRlVR~e 1014 (1030)
T KOG1967|consen  943 LQTEHLS-------TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF-RPLVLRALIKILDDKKRLVRKE 1014 (1030)
T ss_pred             cchHHHh-------HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc-cHHHHHHhhhccCcHHHHHHHH
Confidence            3333332       48888888776655   4789999999999988433 222222 2246777888888888889999


Q ss_pred             HHHHH
Q 010080          406 VAYVL  410 (518)
Q Consensus       406 A~~aL  410 (518)
                      |+.+=
T Consensus      1015 Av~tR 1019 (1030)
T KOG1967|consen 1015 AVDTR 1019 (1030)
T ss_pred             HHHHh
Confidence            98763

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.41  E-value=0.54  Score=40.78  Aligned_cols=123  Identities=17%  Similarity=0.239  Sum_probs=91.9

Q ss_pred             hhHHHhcCchHHHHHHHccCCC-----ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC--hhhh
Q 010080          288 TSLLVKSGVLQLLVERLATSNS-----LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVL  360 (518)
Q Consensus       288 ~~~~~~~g~~~~Lv~lL~~~~~-----~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i  360 (518)
                      .+.++..|++..|+.++.+...     .+++..+|.++..+..+....-+ .+      ...++..++..++..  +..+
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l------~~~FI~Kia~~Vn~~~~d~~i   76 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TL------SDSFIKKIASYVNSSAMDASI   76 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hc------cHHHHHHHHHHHccccccchH
Confidence            4567788999999999864332     35667788888887765432322 22      246888888888754  4789


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080          361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       361 ~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  417 (518)
                      ...|.-.|-+++..++...+.+...=-++.|+..|+.++.+++..|...+.-+...+
T Consensus        77 ~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA  133 (160)
T PF11841_consen   77 LQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA  133 (160)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999887665655555555999999999999999999998888777653

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.25  E-value=0.73  Score=46.44  Aligned_cols=243  Identities=19%  Similarity=0.132  Sum_probs=133.4

Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      |..++.-|.+.....+|..++--|+..+. ++++|..+..+|....++..+.. ++......++-++..+...+.+  ..
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~--~~   99 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL--NM   99 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc--ch
Confidence            45555555544567899999999999998 78999999999999999998853 3333444444455444333222  22


Q ss_pred             hHHHhhchHHHHHHHhcc---------CC-----------------------------------hhHHHHHHHHHHHhhc
Q 010080          247 ELIKVDGLLDAILRHLKR---------AD-----------------------------------EELTTEVAWVVVYLSA  282 (518)
Q Consensus       247 ~~i~~~~~l~~L~~lL~~---------~d-----------------------------------~~v~~~a~~~L~~L~~  282 (518)
                      +.+.....+..+++++..         .+                                   .+-+.-+..|+..++.
T Consensus       100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~  179 (361)
T PF07814_consen  100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVR  179 (361)
T ss_pred             hhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHH
Confidence            233334555555666550         00                                   0111223333333320


Q ss_pred             --------------CCchhhhHHHhcCchHHHHHHHcc----CC------C-----ccchhhhhhhhhhhhcCCCcccce
Q 010080          283 --------------LSNVATSLLVKSGVLQLLVERLAT----SN------S-----LQLLIPVLRSLGNLVAGDSSTISD  333 (518)
Q Consensus       283 --------------~~~~~~~~~~~~g~~~~Lv~lL~~----~~------~-----~~v~~~al~~L~nl~~~~~~~~~~  333 (518)
                                    ..+...+.+...|++..+++.+.+    ..      .     ......++++|-|.+..+......
T Consensus       180 ~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~  259 (361)
T PF07814_consen  180 SLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSY  259 (361)
T ss_pred             HHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHH
Confidence                          001123444556788888888751    10      0     112345788888887666544333


Q ss_pred             eeccCCCchhhhHHHH----HHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-------c------
Q 010080          334 VLVPGHGITDQVIAVL----VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-------S------  396 (518)
Q Consensus       334 ~i~~G~~~~~~~l~~L----~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-------~------  396 (518)
                      .+...    .+.++.+    .......-..+...++.++-|++..+++.+..+-..++...+..+.       .      
T Consensus       260 l~~~~----~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~  335 (361)
T PF07814_consen  260 LLSHR----SSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVP  335 (361)
T ss_pred             HHHhc----ccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccccc
Confidence            33221    1223222    2222222345567899999999998877766655443222211111       1      


Q ss_pred             -CCChhHHHHHHHHHHHhcCCC
Q 010080          397 -TSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       397 -~~~~~v~~eA~~aL~nl~~~~  417 (518)
                       ...++..--+..++.|++.+.
T Consensus       336 ~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  336 EESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             ccccchHHHHHHHhHHHheeeC
Confidence             123456666777777777653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.24  E-value=1.9  Score=43.73  Aligned_cols=226  Identities=18%  Similarity=0.192  Sum_probs=129.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcH--HHHHHcCCHHHHHHHhcCC-----CChHHHHH-HHHHHHHHhcCChH-HHHH
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFPPI--ETALKAGAIPVLVQCLAFG-----SPDEQLLE-AAWCLTNIAAGKQE-ETKA  163 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~~~--~~~i~~g~ip~Lv~~L~~~-----~~~~~~~e-A~~~L~nia~~~~~-~~~~  163 (518)
                      ..+.++++.|+-..-|+..+.+-...  ..+.++=+.|.+-++|...     .++.+-.. +..+|+.+|+...- ....
T Consensus        22 ~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~  101 (698)
T KOG2611|consen   22 GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEE  101 (698)
T ss_pred             ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHH
Confidence            44567899999999998776643222  2377777888888888642     23333333 77788888865432 2345


Q ss_pred             hcCChHHHHHhhcCCCCHH------HHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHH-HHHHHHHHHh
Q 010080          164 LLPALPLLIAHLGEKSSSP------VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV-RTAAWALSNL  236 (518)
Q Consensus       164 v~~~v~~Lv~lL~~~~~~~------v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~-~~a~~~L~nL  236 (518)
                      +++.||.|+..+....+++      +.+.|-.||..+++. +.-...++..|+++.+.++-.-++-..- .-+...+.-+
T Consensus       102 ~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~  180 (698)
T KOG2611|consen  102 MVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLL  180 (698)
T ss_pred             HHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence            5689999999998754444      889999999999985 6777888999999999987653321111 1111111111


Q ss_pred             hcC--CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh--------cCchHHHHHHHcc
Q 010080          237 IKG--PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--------SGVLQLLVERLAT  306 (518)
Q Consensus       237 ~~~--~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~g~~~~Lv~lL~~  306 (518)
                      ..+  .-+.....+.   ..+..+..=+...+....-+.|..|+.+....  ..+.+++        ...-.-++.+|.+
T Consensus       181 ~~~~~cw~e~~~~fl---ali~~va~df~~~~~a~KfElc~lL~~vl~~~--~~e~~~~pl~~~~w~~~l~~G~~~IL~~  255 (698)
T KOG2611|consen  181 VSKLDCWSETIERFL---ALIAAVARDFAVLHNALKFELCHLLSAVLSSE--YSELLHEPLRSMNWADYLRTGVVAILQN  255 (698)
T ss_pred             HHhcccCcCCHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--hHHhccChhhhcchHHHHHHHHHHHHhc
Confidence            111  0011111111   22333333334445566777788877433211  1111110        0112234445543


Q ss_pred             CCCccchhhhhhhhhhhh
Q 010080          307 SNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       307 ~~~~~v~~~al~~L~nl~  324 (518)
                      .-.+.-+.||+....|+.
T Consensus       256 kv~p~qr~pAL~Laa~~~  273 (698)
T KOG2611|consen  256 KVAPSQRLPALILAANMM  273 (698)
T ss_pred             ccCchhcChHHHHHHHHH
Confidence            335556678887777765

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.22  E-value=0.78  Score=46.32  Aligned_cols=186  Identities=13%  Similarity=0.133  Sum_probs=120.6

Q ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080           82 EELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  160 (518)
Q Consensus        82 ~~l~~~l~~~~s~-~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~  160 (518)
                      .-+..++..+.+. ..+.+-.|+..|.++++.+....+++.. ..++-.+++.|....+......|+.+|..++..++  
T Consensus       286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~--  362 (516)
T KOG2956|consen  286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP--  362 (516)
T ss_pred             HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch--
Confidence            3445566655544 5667888999999999887666555444 34666777888753334455669999999997554  


Q ss_pred             HHHhcC----ChHHHHHhhcCCCCHHHHHHHHH-HHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHH
Q 010080          161 TKALLP----ALPLLIAHLGEKSSSPVAEQCAW-ALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN  235 (518)
Q Consensus       161 ~~~v~~----~v~~Lv~lL~~~~~~~v~~~a~~-~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n  235 (518)
                       ..+++    +|..++..-.. ++.++...|.. |+.-++...|..+        |..+..+|...+......++.++..
T Consensus       363 -~~l~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tk  432 (516)
T KOG2956|consen  363 -ARLFDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTK  432 (516)
T ss_pred             -HhhhchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHH
Confidence             34443    66677776665 44555444443 4444555444332        3344555555666667777778888


Q ss_pred             hhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          236 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       236 L~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      ++..-. .... .-....+.|.+++--.+.+..|+..+..||.++..
T Consensus       433 l~e~l~-~EeL-~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  433 LFERLS-AEEL-LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHhhcC-HHHH-HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            886521 1111 11245788889988889999999999999998874

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.19  E-value=0.82  Score=49.51  Aligned_cols=179  Identities=15%  Similarity=0.128  Sum_probs=113.7

Q ss_pred             CCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchH
Q 010080          219 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQ  298 (518)
Q Consensus       219 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~  298 (518)
                      .++.+.++..+...++.+.+...+.   ..+...+++......|.++|+-+-.+|...+..||+-        ....+++
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~---~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~il~  805 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKA---TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDILP  805 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchh---hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhhHH
Confidence            3455678888999999998754222   2334568899999999999999999999988888863        3445677


Q ss_pred             HHHHHHccCC-C--ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC
Q 010080          299 LLVERLATSN-S--LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS  375 (518)
Q Consensus       299 ~Lv~lL~~~~-~--~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~  375 (518)
                      .+.+.-.+.. .  ++.+..+-.++++++..-.+-.....       .-++..++..++.++...|..++..+++++.-.
T Consensus       806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-------~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~  878 (982)
T KOG4653|consen  806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-------AVLINTFLSGVREPDHEFRASSLANLGQLCQLL  878 (982)
T ss_pred             HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-------HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence            7777332221 1  23333444555555433222111111       124555666667777788999999999997543


Q ss_pred             HHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCC
Q 010080          376 VEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       376 ~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~  416 (518)
                      .-+....+ +.++..++.+.+ ++++-+|+.|+-.|..+..+
T Consensus       879 a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  879 AFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             hhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence            22222211 124555666654 56788999999999998774

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.16  E-value=3.4  Score=46.59  Aligned_cols=240  Identities=13%  Similarity=0.084  Sum_probs=137.3

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc----CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hhHHHH
Q 010080          131 VQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL----PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVL  205 (518)
Q Consensus       131 v~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~----~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~  205 (518)
                      +....+.+...+|..+..+|..++... .....+.    ..-..|..-+++ .....+...+.||..|-...+ +..+.+
T Consensus       659 ~~~~e~~~~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  659 DPEFENSSSTKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hHHhhccccHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            334444445678889999999999762 2222221    233344444444 345566667777777765433 333332


Q ss_pred             HhcCChhHHHhhhCCCChhHHHHHHHHHHHhh--cC---CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080          206 LSQGALPPLARMMLPNKGSTVRTAAWALSNLI--KG---PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  280 (518)
Q Consensus       206 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~--~~---~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  280 (518)
                      . . .||-++-+++..+...++++.-+|..++  ..   ....+..+.  ...+++.|...+-.+..-+....+-++..+
T Consensus       737 ~-k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~--lnefl~~Isagl~gd~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  737 P-K-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAI--LNEFLSIISAGLVGDSTRVVASDIVAITHI  812 (1176)
T ss_pred             H-H-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHH--HHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence            2 2 2444444446778889999999999988  21   111122222  245666665554333332222224455555


Q ss_pred             hcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc-ceeeccCCCchhhhHHHHHHHhccChhh
Q 010080          281 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI-SDVLVPGHGITDQVIAVLVKCLKSEHRV  359 (518)
Q Consensus       281 ~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~-~~~i~~G~~~~~~~l~~L~~lL~~~~~~  359 (518)
                      ..........-.-.+++..+.-+| .+++.+++..|+..+.-+++..++.. ....       ..++|.+..++...+..
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-------~~LL~sll~ls~d~k~~  884 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEECLSPHL-------EELLPSLLALSHDHKIK  884 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-------HHHHHHHHHHHHhhhHH
Confidence            432222222222234445555556 57899999999999999998776532 2222       24788888877777778


Q ss_pred             hHHHHHHHHHHhccC-CHHHHHHHHh
Q 010080          360 LKKEAAWVLSNIAAG-SVEHKQLIHS  384 (518)
Q Consensus       360 i~~~a~~~Lsnl~~~-~~~~~~~li~  384 (518)
                      ++..+-..+--++.. +.+.++.++.
T Consensus       885 ~r~Kvr~LlekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  885 VRKKVRLLLEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence            888888888777653 4455555544

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.10  E-value=0.68  Score=49.36  Aligned_cols=245  Identities=14%  Similarity=0.128  Sum_probs=145.3

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChH
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP  169 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~  169 (518)
                      .+.+=+...|+--+.-+|+ .++ .+|.    .++..+.-+..+|.+.+ +...+||+..|.+++....    ++..+..
T Consensus       214 qi~~~~~~LqlViVE~Irk-v~~-~~p~----~~~~~i~~i~~lL~sts-saV~fEaa~tlv~lS~~p~----alk~Aa~  282 (948)
T KOG1058|consen  214 QIPSFNDSLQLVIVELIRK-VCL-ANPA----EKARYIRCIYNLLSSTS-SAVIFEAAGTLVTLSNDPT----ALKAAAS  282 (948)
T ss_pred             hccCccHHHHHHHHHHHHH-HHh-cCHH----HhhHHHHHHHHHHhcCC-chhhhhhcceEEEccCCHH----HHHHHHH
Confidence            3344456667766777777 444 2332    23456777788888764 5677999999998886432    2223455


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI  249 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i  249 (518)
                      .++.++-..++..++--.+--|..+..   ..+  -+-.|.+--++++|.+++.++++.+.-...-|....+        
T Consensus       283 ~~i~l~~kesdnnvklIvldrl~~l~~---~~~--~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN--------  349 (948)
T KOG1058|consen  283 TYIDLLVKESDNNVKLIVLDRLSELKA---LHE--KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN--------  349 (948)
T ss_pred             HHHHHHHhccCcchhhhhHHHHHHHhh---hhH--HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc--------
Confidence            566665543444444444444444432   111  1223456667888999999999999888777876532        


Q ss_pred             HhhchHHHHHHHhc-c------CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhh
Q 010080          250 KVDGLLDAILRHLK-R------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN  322 (518)
Q Consensus       250 ~~~~~l~~L~~lL~-~------~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~n  322 (518)
                       ....+..|-+=+. .      ++.+.+.....++++.+...++..     ..+++.|++.+. +.++.....++..+..
T Consensus       350 -vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fis-D~N~~aas~vl~FvrE  422 (948)
T KOG1058|consen  350 -VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFIS-DSNEAAASDVLMFVRE  422 (948)
T ss_pred             -HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhc-cCCHHHHHHHHHHHHH
Confidence             1123333332222 1      123567788888988887665543     356789999985 5555555555666655


Q ss_pred             hhcCCCcccceeeccCCCchhhhHHHHHHHhcc-ChhhhHHHHHHHHHHhccCCH
Q 010080          323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSV  376 (518)
Q Consensus       323 l~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-~~~~i~~~a~~~Lsnl~~~~~  376 (518)
                      ...-.+.-.           ..++..|+.-+.. ...++-+.|+|.++--+.+..
T Consensus       423 ~iek~p~Lr-----------~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  423 AIEKFPNLR-----------ASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HHHhCchHH-----------HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence            543332211           1244444444422 345788899999998887754

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.07  E-value=0.17  Score=45.68  Aligned_cols=93  Identities=18%  Similarity=0.193  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCC--------CChHHHHHHHHHHHHHhcCChHHHHHhc---CChH
Q 010080          101 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG--------SPDEQLLEAAWCLTNIAAGKQEETKALL---PALP  169 (518)
Q Consensus       101 ~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~--------~~~~~~~eA~~~L~nia~~~~~~~~~v~---~~v~  169 (518)
                      ..+..|+..|...+-..++.+++.|++..|+.+|..-        .....+.+++.||..|.... .....++   +++.
T Consensus        83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~  161 (187)
T PF06371_consen   83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVN  161 (187)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHH
T ss_pred             HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHH
Confidence            6778888888877666788999999999999988621        22356678999999998654 4566666   5899


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhh
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVA  195 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla  195 (518)
                      .++..|.+ ++..++..++..|+.+|
T Consensus       162 ~i~~~L~s-~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  162 LIALSLDS-PNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence            99999987 78999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.03  E-value=0.17  Score=37.76  Aligned_cols=55  Identities=22%  Similarity=0.401  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCC
Q 010080          361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       361 ~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~  416 (518)
                      .|.|.|+++|+++. +.-++.+.+.++++.++++.. ++...+|--|.++|+-++..
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T   59 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST   59 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence            57899999999764 456666777899999999996 56678999999999998763

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.93  E-value=0.32  Score=52.15  Aligned_cols=219  Identities=16%  Similarity=0.135  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHh-hhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHH-HhhcCCCCCchhhHHHhhchHHHHHH
Q 010080          183 VAEQCAWALGN-VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS-NLIKGPDPKPATELIKVDGLLDAILR  260 (518)
Q Consensus       183 v~~~a~~~L~n-la~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~i~~~~~l~~L~~  260 (518)
                      +..+.-|...- ++....+-|-..+..|+...|+++..............+|. .+.. +. ..      ....++.+.+
T Consensus       477 vakt~~~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~-~~------~~~v~~~~~s  548 (748)
T KOG4151|consen  477 VAKTVSWAKNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PG-ER------SYEVVKPLDS  548 (748)
T ss_pred             HHHHHHHHHHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CC-Cc------hhhhhhhhcc
Confidence            33333354333 33335566777889999999999988777777777777777 2221 11 11      1245555555


Q ss_pred             HhccCCh-hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCC
Q 010080          261 HLKRADE-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH  339 (518)
Q Consensus       261 lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~  339 (518)
                      .++..-. .=.-+++-++.||+..+....+.++..-.++.+-.++ ...++..+..++..+.|+..++.-....+.+.  
T Consensus       549 ~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~--  625 (748)
T KOG4151|consen  549 ALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEY--  625 (748)
T ss_pred             hhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhcc--
Confidence            5543221 1234678888889886666667777766666666665 36778888999999999998875544444432  


Q ss_pred             CchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHH-HHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          340 GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL-IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       340 ~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~-li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                         ...++.....+..........++.++.-|++-...++.. .-.......++.++.+++..+|.-.+..+.|+..
T Consensus       626 ---~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~  699 (748)
T KOG4151|consen  626 ---KDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE  699 (748)
T ss_pred             ---ccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence               234555555565566667777777777676655555552 2233567889999999999999999999999543

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.93  E-value=0.43  Score=45.04  Aligned_cols=82  Identities=13%  Similarity=0.139  Sum_probs=66.3

Q ss_pred             HHHHhcCchHHHHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHh
Q 010080          432 VSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDK  508 (518)
Q Consensus       432 ~~l~~~g~i~~L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~--~~~i~~~a~~il~~  508 (518)
                      ....+...+..|+++|. ...+.+...+|.+|..+|...+.  +...||+++|+..+..+..+.  +.+++.+..+.+--
T Consensus       127 ~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~--N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~f  204 (257)
T PF08045_consen  127 KLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE--NQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYF  204 (257)
T ss_pred             HHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH--HHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHH
Confidence            44557789999999994 46788999999999999875543  567899999999998886654  77899999988887


Q ss_pred             hcCccCC
Q 010080          509 YFGEDYG  515 (518)
Q Consensus       509 ~f~~~~~  515 (518)
                      |..++..
T Consensus       205 yl~~E~~  211 (257)
T PF08045_consen  205 YLMPETP  211 (257)
T ss_pred             HHcccCC
Confidence            8777654

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=94.79  E-value=2.2  Score=40.74  Aligned_cols=219  Identities=14%  Similarity=0.100  Sum_probs=134.6

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC--CChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080          171 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATEL  248 (518)
Q Consensus       171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~  248 (518)
                      |=.+|.+ ++..+|..|+.+|+.+...-+   ...+...-+..|+.++.+  .+......+..++..|.+.+...  .+.
T Consensus         4 Lg~~Lts-ed~~~R~ka~~~Ls~vL~~lp---~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~--~~~   77 (262)
T PF14500_consen    4 LGEYLTS-EDPIIRAKALELLSEVLERLP---PDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS--PES   77 (262)
T ss_pred             hhhhhCC-CCHHHHHHHHHHHHHHHHhCC---HhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC--hhh
Confidence            3456766 789999999999999876433   222444446777777654  35556666677777777554311  111


Q ss_pred             HHhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080          249 IKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  326 (518)
Q Consensus       249 i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  326 (518)
                        ...++..+.+-.+  .--...+..+...|..+.....+..+.+ ..+.+..+++.+....||..+..+...+..+...
T Consensus        78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~  154 (262)
T PF14500_consen   78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE  154 (262)
T ss_pred             --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence              1233333333222  1123567788888888886543333222 2356777788776778888888888888877755


Q ss_pred             CCcccceeeccCCCchhhhHHHHHHHhc--------cC--hh--hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080          327 DSSTISDVLVPGHGITDQVIAVLVKCLK--------SE--HR--VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  394 (518)
Q Consensus       327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~--------~~--~~--~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l  394 (518)
                      -+.  .           ....-+...+.        .+  ++  -.+..-...|.++.+.++...     .-.+|.|++-
T Consensus       155 ~~~--~-----------~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleK  216 (262)
T PF14500_consen  155 FDI--S-----------EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEK  216 (262)
T ss_pred             ccc--c-----------hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHH
Confidence            441  1           12333333321        11  22  234455556666655554432     2378999999


Q ss_pred             hcCCChhHHHHHHHHHHHhcCC
Q 010080          395 LSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       395 L~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      |.++...+|..++.+|..++..
T Consensus       217 L~s~~~~~K~D~L~tL~~c~~~  238 (262)
T PF14500_consen  217 LDSTSPSVKLDSLQTLKACIEN  238 (262)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999888763

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.66  E-value=4.3  Score=40.28  Aligned_cols=205  Identities=13%  Similarity=0.098  Sum_probs=135.7

Q ss_pred             HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH-----HHHhcCC-hHHHHHhhcCCCCHHHHHHHHHHHH
Q 010080          119 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE-----TKALLPA-LPLLIAHLGEKSSSPVAEQCAWALG  192 (518)
Q Consensus       119 ~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~-----~~~v~~~-v~~Lv~lL~~~~~~~v~~~a~~~L~  192 (518)
                      .++++.++++.|+..|..-+ -+....++.++.++.......     .+.+..- -..+..++...+++++.-.|-..|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence            35678899999999987543 334456778888887543222     3333333 2223333333456677777777777


Q ss_pred             hhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHh--hchHHHHHHHhccCChhHH
Q 010080          193 NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKV--DGLLDAILRHLKRADEELT  270 (518)
Q Consensus       193 nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~--~~~l~~L~~lL~~~d~~v~  270 (518)
                      ..+. .+.+...++....+-.+...++.++-++...|..++.-+... ++....+.+..  ..+......+|.+++--++
T Consensus       149 ec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            7776 566777888888888899999999989999999888875533 12333333321  2456677888889988899


Q ss_pred             HHHHHHHHHhhcCCchhh----hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC
Q 010080          271 TEVAWVVVYLSALSNVAT----SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  328 (518)
Q Consensus       271 ~~a~~~L~~L~~~~~~~~----~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  328 (518)
                      ..++-.|+.|.... .+.    ..+-+..-+..++.+| .+.+..++..|..++--++..+.
T Consensus       227 rqslkLL~ellldr-~n~~vm~~yi~~~~nLkl~M~lL-~d~sk~Iq~eAFhvFKvFVANp~  286 (335)
T PF08569_consen  227 RQSLKLLGELLLDR-SNFNVMTRYISSPENLKLMMNLL-RDKSKNIQFEAFHVFKVFVANPN  286 (335)
T ss_dssp             HHHHHHHHHHHHSG-GGHHHHHHHTT-HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHH-SS
T ss_pred             hhhHHHHHHHHHch-hHHHHHHHHHCCHHHHHHHHHHh-cCcchhhhHHHHHHHHHHHhCCC
Confidence            99999999988632 232    3444556677888888 57888899999998888877653

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.60  E-value=0.3  Score=54.44  Aligned_cols=161  Identities=24%  Similarity=0.220  Sum_probs=118.3

Q ss_pred             cCCHHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080          124 AGAIPVLVQCLAF---GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  200 (518)
Q Consensus       124 ~g~ip~Lv~~L~~---~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~  200 (518)
                      ....|.+++..+.   .+.+++|..|.-+|..+..-+.+   .+-..+|.|+..|..++++.++..++-++|-++.-.|.
T Consensus       918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            4567888887753   23477888888888888754332   22247899999999779999999999999998874433


Q ss_pred             hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080          201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  280 (518)
Q Consensus       201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  280 (518)
                      .-+     -.-+.|.+-+..+++.++++|..+|++|.-..       ++.+.|.++-++.+|.+++++|..-|=..+..|
T Consensus       995 lie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-------miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  995 LIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND-------MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             ccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-------hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            221     12334555666789999999999999998542       677889999999999999999988888788888


Q ss_pred             hcCCchhhhHHHhcCchHHHHHHHc
Q 010080          281 SALSNVATSLLVKSGVLQLLVERLA  305 (518)
Q Consensus       281 ~~~~~~~~~~~~~~g~~~~Lv~lL~  305 (518)
                      +...+    .+  .+++|.++..|.
T Consensus      1063 s~k~n----~i--ynlLPdil~~Ls 1081 (1251)
T KOG0414|consen 1063 SSKGN----TI--YNLLPDILSRLS 1081 (1251)
T ss_pred             hhccc----ch--hhhchHHHHhhc
Confidence            76332    12  245666666663

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.57  E-value=0.83  Score=48.04  Aligned_cols=128  Identities=18%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCC
Q 010080          308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA  387 (518)
Q Consensus       308 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~  387 (518)
                      ++.+...-|...|......-++..           ..++..++.|....+..||+.|...|..+|.++++++..+.+   
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~-----------~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD---   99 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQ-----------EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD---   99 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGH-----------HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhH-----------HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH---
Confidence            455566667777777766554432           357888999999999999999999999999998888877655   


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc---cCCHHHHHHHHHHHHH
Q 010080          388 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR---SADIEAARLGLQFMEL  464 (518)
Q Consensus       388 i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~---~~d~~~~~~~l~~l~~  464 (518)
                        .|+++|++.++.....+-++|..+...                  -..+.+..|++-+.   +.|..+...++.+|..
T Consensus       100 --vL~QlL~tdd~~E~~~v~~sL~~ll~~------------------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen  100 --VLVQLLQTDDPVELDAVKNSLMSLLKQ------------------DPKGTLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             --HHHHHTT---HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             --HHHHHHhcccHHHHHHHHHHHHHHHhc------------------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence              899999998877666666666655431                  12234566666555   5777788888888866


Q ss_pred             HHccC
Q 010080          465 VLRGM  469 (518)
Q Consensus       465 il~~~  469 (518)
                      -+...
T Consensus       160 kl~~l  164 (556)
T PF05918_consen  160 KLKPL  164 (556)
T ss_dssp             HGGGS
T ss_pred             HHhhC
Confidence            55533

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.55  E-value=2.6  Score=42.80  Aligned_cols=194  Identities=12%  Similarity=0.134  Sum_probs=117.2

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhhCCC---hhhHHHHHhcCChhHHHhhhCCC------ChhH-HHHHHHHHHHhhcCC
Q 010080          171 LIAHLGEKSSSPVAEQCAWALGNVAGEG---EEFRNVLLSQGALPPLARMMLPN------KGST-VRTAAWALSNLIKGP  240 (518)
Q Consensus       171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~---~~~r~~~~~~g~i~~L~~ll~~~------~~~~-~~~a~~~L~nL~~~~  240 (518)
                      +..++.. .+.+-+-.|+......+...   ...|..+.+.=+.+.+-+++...      .+.+ +..+...|..+|+.+
T Consensus        16 ~~~L~~~-k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKG-KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcc-cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            4455554 56677778888888887533   24667788888899999998742      1333 455666778899765


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccC-Ch------hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccch
Q 010080          241 DPKPATELIKVDGLLDAILRHLKRA-DE------ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL  313 (518)
Q Consensus       241 ~~~~~~~~i~~~~~l~~L~~lL~~~-d~------~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~  313 (518)
                      +-....+++   ..||.|+.++... |+      .+..++..||..++.. +...+.++..|.++.+.+.-..++...-.
T Consensus        95 ElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~  170 (698)
T KOG2611|consen   95 ELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDM  170 (698)
T ss_pred             hhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhH
Confidence            433334443   7899999998733 22      2778888888877764 66788899999999999765422222222


Q ss_pred             hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080          314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  374 (518)
Q Consensus       314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~  374 (518)
                      .-++.++--...+.+......-+     -..++..+..=+...+...+.|.|..|+.+...
T Consensus       171 alal~Vlll~~~~~~cw~e~~~~-----flali~~va~df~~~~~a~KfElc~lL~~vl~~  226 (698)
T KOG2611|consen  171 ALALKVLLLLVSKLDCWSETIER-----FLALIAAVARDFAVLHNALKFELCHLLSAVLSS  226 (698)
T ss_pred             HHHHHHHHHHHHhcccCcCCHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence            23343333333332211110000     001222333333344567889999999976554

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.48  Score=48.82  Aligned_cols=148  Identities=12%  Similarity=0.182  Sum_probs=101.4

Q ss_pred             hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCChhHHHHHHHHHHHhhcCCchhhhHHHhc
Q 010080          216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVKS  294 (518)
Q Consensus       216 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~  294 (518)
                      .++.+.++-++.+.+.++.--.-+..         ..+++..+++. +++.+++|+..|.-+|..+|..+.         
T Consensus       523 ell~d~ds~lRy~G~fs~alAy~GTg---------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------  584 (926)
T COG5116         523 ELLYDKDSILRYNGVFSLALAYVGTG---------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------  584 (926)
T ss_pred             HHhcCchHHhhhccHHHHHHHHhcCC---------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------
Confidence            34445566666666666543222321         23566667766 667888999999999999997433         


Q ss_pred             CchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080          295 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  374 (518)
Q Consensus       295 g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~  374 (518)
                      ..+...+++|..+-+..++....-+||-.|.++..+             ..+..|-.++.....-+|..||.+++-|...
T Consensus       585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q  651 (926)
T COG5116         585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------------VATDILEALMYDTNDFVRQSAMIAVGMILMQ  651 (926)
T ss_pred             chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence            456777888877778889988888999888776533             3667777788888889999999999988653


Q ss_pred             -CHHHHHHHHhCCCHHHHHHHhc
Q 010080          375 -SVEHKQLIHSSEALALLLHLLS  396 (518)
Q Consensus       375 -~~~~~~~li~~~~i~~Li~lL~  396 (518)
                       +++....+  .+++..+.+++.
T Consensus       652 ~n~~Lnp~v--~~I~k~f~~vI~  672 (926)
T COG5116         652 CNPELNPNV--KRIIKKFNRVIV  672 (926)
T ss_pred             cCcccChhH--HHHHHHHHHHHh
Confidence             43322112  135556666663

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.47  E-value=1.7  Score=42.78  Aligned_cols=187  Identities=19%  Similarity=0.200  Sum_probs=107.0

Q ss_pred             HhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCChhHHHHHHHHHHHhhc--CCchhhhH
Q 010080          215 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSA--LSNVATSL  290 (518)
Q Consensus       215 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--~~~~~~~~  290 (518)
                      +..+...+...+..+.-.+.++...+   +..+.+.  ...+++.+.+.++.+..+-+.-++.++.-++-  +.......
T Consensus        49 Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   49 IDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            33334456778888888888877653   2233332  23567778888887766555556665555543  33344555


Q ss_pred             HHhcCchHHHHHHHccCC-CccchhhhhhhhhhhhcC---CCcccceeeccCCCchhhhHHHHHH--Hhcc---------
Q 010080          291 LVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAG---DSSTISDVLVPGHGITDQVIAVLVK--CLKS---------  355 (518)
Q Consensus       291 ~~~~g~~~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~---~~~~~~~~i~~G~~~~~~~l~~L~~--lL~~---------  355 (518)
                      +++ .+.|.|...+.... +..++..++.+||-++..   +...+...+        ..+..+..  ....         
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--------~~le~if~~~~~~~~~~~~~~~~  196 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--------ESLESIFLLSILKSDGNAPVVAA  196 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--------HHHHHHHHHHhcCcCCCcccccC
Confidence            554 45677777775332 334556667777766532   222222111        13332211  1111         


Q ss_pred             -ChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          356 -EHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       356 -~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                       +++.+...|+.+-+-|... ....+....+ ..+|.|..+|.+.+.+||..|..+|.-+.
T Consensus       197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  197 EDDAALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CCccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence             1235666666444545443 3333444433 36999999999999999999999988774

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.46  E-value=0.54  Score=49.97  Aligned_cols=163  Identities=11%  Similarity=0.073  Sum_probs=108.8

Q ss_pred             HHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCChhHHHHHHHHHHHhhcCCchhhhHHH
Q 010080          214 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLV  292 (518)
Q Consensus       214 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~  292 (518)
                      +-.++.+.++-++...++++.----+..         ..+++..|++. .++.+.+|+..|.-+|+.++..++       
T Consensus       524 I~el~~dkdpilR~~Gm~t~alAy~GTg---------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp-------  587 (929)
T KOG2062|consen  524 IKELLRDKDPILRYGGMYTLALAYVGTG---------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP-------  587 (929)
T ss_pred             HHHHhcCCchhhhhhhHHHHHHHHhccC---------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh-------
Confidence            3355666677788887777653222321         13556666666 567788999999999999997554       


Q ss_pred             hcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhc
Q 010080          293 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA  372 (518)
Q Consensus       293 ~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~  372 (518)
                        ..++..|.+|..+-++.|+--+..+||-.|.|+...             ..+..|-.+...+..-||+.|+.+++-|.
T Consensus       588 --~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------------eAi~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  588 --EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------------EAINLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             --hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------------HHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence              346788888887889999999999999988887432             35666666777777789999999998876


Q ss_pred             cC-CHHHHHHHHhCCCHHHHHHHhcC--CChhHHHHHHHH
Q 010080          373 AG-SVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYV  409 (518)
Q Consensus       373 ~~-~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~eA~~a  409 (518)
                      .. ++..+-.+  .++...+.+++.+  .|.-++--|+.+
T Consensus       653 ~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~aK~GAilA  690 (929)
T KOG2062|consen  653 IQQTEQLCPKV--NGFRKQLEKVINDKHEDGMAKFGAILA  690 (929)
T ss_pred             HhcccccCchH--HHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            43 22211111  1345556666643  333344444443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.43  E-value=0.91  Score=50.09  Aligned_cols=181  Identities=17%  Similarity=0.154  Sum_probs=123.1

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH-HHHhcCCh
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE-TKALLPAL  168 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~-~~~v~~~v  168 (518)
                      .+-+.+-..+.+|+..+-..++... ..+ .-...|.+-.++.....+.+-.+...|+.+|..||.+.... .....+..
T Consensus       261 ~~~s~~WK~R~Eale~l~~~l~e~~-~~~-~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~  338 (815)
T KOG1820|consen  261 EMLSKKWKDRKEALEELVAILEEAK-KEI-VKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVF  338 (815)
T ss_pred             hhhccchHHHHHHHHHHHHHHhccc-ccc-ccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhc
Confidence            4457889999999999999888765 111 11125556666666666665556677999999999654433 44444789


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCc-hhh
Q 010080          169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP-ATE  247 (518)
Q Consensus       169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~  247 (518)
                      |.|+..+.. ....+++.++-++-.++...+       ....++.++.++.+.++.+...+...+....+..++.. ...
T Consensus       339 p~lld~lke-kk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~  410 (815)
T KOG1820|consen  339 PSLLDRLKE-KKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE  410 (815)
T ss_pred             chHHHHhhh-ccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence            999999987 577888877777766655221       12346777788888888877665444444443332222 222


Q ss_pred             HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      .  ..+.+|.++....+.+.+|+..+..++.-+..
T Consensus       411 t--~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  411 T--VKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             h--HHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            2  45889999999999999999999888876664

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.37  E-value=0.21  Score=43.72  Aligned_cols=145  Identities=16%  Similarity=0.164  Sum_probs=100.8

Q ss_pred             hHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC
Q 010080          297 LQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS  375 (518)
Q Consensus       297 ~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~  375 (518)
                      +..++..|.. ....+++..++-++..+..   ...+..       ..-+-..+..++......-...++.+++.+.-+.
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~~-------~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~   74 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREEF-------KEKISDFIESLLDEGEMDSLIIAFSALTALFPGP   74 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHHH-------HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC
Confidence            4445555542 4566788888888877741   111111       1234455666666666667788999999999888


Q ss_pred             HHHHHHHH-hCCCHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhcc-CC
Q 010080          376 VEHKQLIH-SSEALALLLHLLS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-AD  451 (518)
Q Consensus       376 ~~~~~~li-~~~~i~~Li~lL~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d  451 (518)
                      ++....++ ..|+++.+..++.  ..+..++..++.+|...|.+            +.++..+...+++-|-++++. +|
T Consensus        75 ~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d------------~~~r~~I~~~~~~~L~~~~~~~~~  142 (157)
T PF11701_consen   75 PDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID------------KSCRTFISKNYVSWLKELYKNSKD  142 (157)
T ss_dssp             HHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS------------HHHHHCCHHHCHHHHHHHTTTCC-
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc------------HHHHHHHHHHHHHHHHHHHccccc
Confidence            88888876 5689999999998  78889999999999998874            567777778889999999964 44


Q ss_pred             HH-HHHHHHHHHH
Q 010080          452 IE-AARLGLQFME  463 (518)
Q Consensus       452 ~~-~~~~~l~~l~  463 (518)
                      .. +...++=+|.
T Consensus       143 ~~~ir~~A~v~L~  155 (157)
T PF11701_consen  143 DSEIRVLAAVGLC  155 (157)
T ss_dssp             HH-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            44 5555544443

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.35  E-value=0.88  Score=50.95  Aligned_cols=143  Identities=18%  Similarity=0.193  Sum_probs=110.7

Q ss_pred             chHHHHHHHhc----cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC
Q 010080          253 GLLDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  328 (518)
Q Consensus       253 ~~l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  328 (518)
                      .+.|.++.+.+    ..||+++..|.-||+.+..-+.+.+.     ..+|.|+..+..++++-++..+.-++|-++..-+
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            45677777764    56789999999999988864443333     3368888888789999999999999998876554


Q ss_pred             cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHH
Q 010080          329 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAY  408 (518)
Q Consensus       329 ~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~  408 (518)
                      ..    ++       -.-+.|..-|..+++.+|+.|..+|++|.-.+     .+--.|-++.+...|.+++..++.-|--
T Consensus       994 nl----ie-------~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen  994 NL----IE-------PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred             cc----cc-------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence            33    32       25678888899999999999999999997654     2334688999999999999999888887


Q ss_pred             HHHHhcCC
Q 010080          409 VLGNLCVS  416 (518)
Q Consensus       409 aL~nl~~~  416 (518)
                      ....++..
T Consensus      1058 FF~Els~k 1065 (1251)
T KOG0414|consen 1058 FFKELSSK 1065 (1251)
T ss_pred             HHHHhhhc
Confidence            76666553

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.16  E-value=1.3  Score=47.14  Aligned_cols=258  Identities=12%  Similarity=0.135  Sum_probs=157.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080           83 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK  162 (518)
Q Consensus        83 ~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~  162 (518)
                      ++..++..++-.+.+++..=.+.|.+-+....    ..++..-++|.|+..+...+........+-.++..-...+    
T Consensus       255 d~~~fLeel~lks~~eK~~Ff~~L~~~l~~~p----e~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e----  326 (690)
T KOG1243|consen  255 DTLLFLEELRLKSVEEKQKFFSGLIDRLDNFP----EEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEE----  326 (690)
T ss_pred             HHHHHHHhcccCcHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccc----
Confidence            34456666667777777777777766454432    4678888999999988865521111222222222222211    


Q ss_pred             HhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC
Q 010080          163 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP  242 (518)
Q Consensus       163 ~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~  242 (518)
                      ...+.+|.+++++.+ .+..+|-.-+.-+-+...   ...+.+++.-++|-+..-+.+.+..+++..+.++..|+..-+ 
T Consensus       327 yq~~i~p~l~kLF~~-~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKS-PDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-  401 (690)
T ss_pred             cccchhhhHHHHhcC-cchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc-
Confidence            333689999999988 677887765554444433   455677888899999999999999999999999998884321 


Q ss_pred             CchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchH-HHHHHHccCCCccchhhhhhhhh
Q 010080          243 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQ-LLVERLATSNSLQLLIPVLRSLG  321 (518)
Q Consensus       243 ~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~-~Lv~lL~~~~~~~v~~~al~~L~  321 (518)
                         ... .....+..+.++-.+++..++.+..-||+.++....    .....+++. .....+ .++-...+..++.++.
T Consensus       402 ---~~~-Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~----~~~R~~vL~~aftral-kdpf~paR~a~v~~l~  472 (690)
T KOG1243|consen  402 ---KRN-LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA----ASVRKRVLASAFTRAL-KDPFVPARKAGVLALA  472 (690)
T ss_pred             ---hhh-hcHHHHHHHHhhCccccCcccccceeeecccccccc----hhhhccccchhhhhhh-cCCCCCchhhhhHHHh
Confidence               111 234556666666556677899999888888875421    122233322 222223 2333444555554444


Q ss_pred             hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHh
Q 010080          322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI  371 (518)
Q Consensus       322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl  371 (518)
                      .....-+...  +       ...++|.+..+.-.++..+|..|--++...
T Consensus       473 at~~~~~~~~--v-------a~kIlp~l~pl~vd~e~~vr~~a~~~i~~f  513 (690)
T KOG1243|consen  473 ATQEYFDQSE--V-------ANKILPSLVPLTVDPEKTVRDTAEKAIRQF  513 (690)
T ss_pred             hcccccchhh--h-------hhhccccccccccCcccchhhHHHHHHHHH
Confidence            3332222111  1       135778888887777777777777666544

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=4.1  Score=43.41  Aligned_cols=223  Identities=15%  Similarity=0.133  Sum_probs=136.7

Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhH
Q 010080          213 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL  290 (518)
Q Consensus       213 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~  290 (518)
                      .|-+-|+.++..++.+|+-.+.++.=-.+|....+-+.  ...-...+..+|.++-+.|+..|.--++.+..-..+.+.-
T Consensus       178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~  257 (1005)
T KOG1949|consen  178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP  257 (1005)
T ss_pred             HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence            34455567789999999999999874433433222110  1233456788899999999988877766665422222222


Q ss_pred             HHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHH
Q 010080          291 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN  370 (518)
Q Consensus       291 ~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsn  370 (518)
                      -+-..++..+.+-+......+|+..+...|..+...+  +...+++       .++|.+-..|..+...||-.+.-.|+-
T Consensus       258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le-------~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLE-------QLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHH-------HHHHhcchhhhccchhHHHHHHHHHHH
Confidence            2222344455554444556688888888888877554  2222332       466777777777788999888888887


Q ss_pred             hccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchh-HHHHHHHHHhcC--chHHHHHhh
Q 010080          371 IAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKL-IQEHLVSLVGRG--CLSGFIDLV  447 (518)
Q Consensus       371 l~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~-~~~~~~~l~~~g--~i~~L~~lL  447 (518)
                      |-+...-+   +.+---...++-.|...+..+.+.-+..|.|.+....    +|+. .-+.+.+|++.+  +...++++|
T Consensus       329 ik~vra~~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~----k~ee~~c~Rc~tlv~~n~~A~~rf~~~l  401 (1005)
T KOG1949|consen  329 IKAVRAAK---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVN----KPEEVWCERCVTLVQMNHAAARRFYQYL  401 (1005)
T ss_pred             HHhhhhhh---hhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHccCHHHHHHHHHHh
Confidence            74432111   2221124567777777777888888888888876421    2321 124567787654  566788888


Q ss_pred             ccCC
Q 010080          448 RSAD  451 (518)
Q Consensus       448 ~~~d  451 (518)
                      ..-.
T Consensus       402 ~~~~  405 (1005)
T KOG1949|consen  402 HEHT  405 (1005)
T ss_pred             cccc
Confidence            7644

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=3.9  Score=43.91  Aligned_cols=282  Identities=17%  Similarity=0.115  Sum_probs=152.5

Q ss_pred             cCCHHHHHHHhc-CC----C-ChHHHHH-HHHHHHHHhc--CChHHHHHhcC--ChHHHHHhhcCCCCHHHHHHHHHHHH
Q 010080          124 AGAIPVLVQCLA-FG----S-PDEQLLE-AAWCLTNIAA--GKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALG  192 (518)
Q Consensus       124 ~g~ip~Lv~~L~-~~----~-~~~~~~e-A~~~L~nia~--~~~~~~~~v~~--~v~~Lv~lL~~~~~~~v~~~a~~~L~  192 (518)
                      .|+++.++..|. +.    + ....|.| |.+.+.++.+  .......-+++  .++.++-.+.+ +.-=++.+|+..+.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s-~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRS-NYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcC-cccchHHHHHHHHH
Confidence            689999999994 21    1 1234445 7788888776  33333444443  56666666666 55668889999999


Q ss_pred             hhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHH
Q 010080          193 NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE  272 (518)
Q Consensus       193 nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~  272 (518)
                      .+..   ++++..+-..+......++++.+..+.-.|+-++.-+.++....+.... .+.+.++.|+.+-+.-+.++...
T Consensus       486 ~~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa-hVp~tmekLLsLSn~feiD~LS~  561 (970)
T COG5656         486 TIEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA-HVPETMEKLLSLSNTFEIDPLSM  561 (970)
T ss_pred             HHHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh-hhhHHHHHHHHhcccccchHHHH
Confidence            8844   5666666666777778888888888999999999988876421111100 01223333333333334444444


Q ss_pred             HHHHH-HHhhcCCchhhhHHHh---cCchHHHHHHHccCCC-----ccchhhhhhhhhhh---hcCCCcccceeeccCCC
Q 010080          273 VAWVV-VYLSALSNVATSLLVK---SGVLQLLVERLATSNS-----LQLLIPVLRSLGNL---VAGDSSTISDVLVPGHG  340 (518)
Q Consensus       273 a~~~L-~~L~~~~~~~~~~~~~---~g~~~~Lv~lL~~~~~-----~~v~~~al~~L~nl---~~~~~~~~~~~i~~G~~  340 (518)
                      +.-.+ .+.++.-......+..   ...++....++.++++     .+-...|...|..+   .-.-+. +-.++..   
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen-~p~vLk~---  637 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLEN-RPLVLKY---  637 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhccc-chHHHHH---
Confidence            44332 2333211112222211   1122222333322211     11223343333333   222111 1111100   


Q ss_pred             chhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC-hhHHHHHHHHHHHhcCC
Q 010080          341 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP-FDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       341 ~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~-~~v~~eA~~aL~nl~~~  416 (518)
                      ......|++--+|.+.....-.||+-.+-+.+-... .+..+ --|++..+.+++.+.. ...-.+++-++.|+...
T Consensus       638 le~slypvi~Filkn~i~dfy~Ea~dildg~tf~sk-eI~pi-mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfity  712 (970)
T COG5656         638 LEVSLYPVISFILKNEISDFYQEALDILDGYTFMSK-EIEPI-MWGIFELLLNLLIDEITAVYSEEVADALDNFITY  712 (970)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH-Hhhhh-hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHh
Confidence            012466777777788878888899998887765432 22222 1245666666665555 36678899999999764

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.88  E-value=0.54  Score=46.06  Aligned_cols=112  Identities=17%  Similarity=0.153  Sum_probs=83.0

Q ss_pred             hhHHHHH-HHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 010080          344 QVIAVLV-KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG  422 (518)
Q Consensus       344 ~~l~~L~-~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~  422 (518)
                      +++..|+ ..+.+.++.+|+.|..++|-++--+.+...     ..++.+.+.++.++..++..|+.+|..+....    |
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~----g   96 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTH----G   96 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----C
Confidence            3555443 678889999999999999988766543322     24677888887789999999999999987632    1


Q ss_pred             CchhHHHHHHHH-------HhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          423 KPKLIQEHLVSL-------VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       423 ~~~~~~~~~~~l-------~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      .     +.....       -...+++.|...|.+.+++++..+.+++..++-.+
T Consensus        97 ~-----~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen   97 I-----DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             c-----hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            0     111111       12457888999999999999999999999998654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.79  E-value=1.3  Score=48.55  Aligned_cols=196  Identities=20%  Similarity=0.244  Sum_probs=123.1

Q ss_pred             HHHhhhCCChhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHH--HHHHHhccCC
Q 010080          190 ALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD--AILRHLKRAD  266 (518)
Q Consensus       190 ~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~--~L~~lL~~~d  266 (518)
                      +|.++..++++....+++.|++..+...+.. ...++.+.+...+.|++......+....   ...+.  .+-.++...+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~---~~~~~~~~f~~~~~~w~  570 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI---FEFIDFSVFKVLLNKWD  570 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHhhcc
Confidence            6778888899999999999999999999985 4688999999999999975422222211   12222  3444454444


Q ss_pred             h-hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhh
Q 010080          267 E-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV  345 (518)
Q Consensus       267 ~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~  345 (518)
                      . +.-..++..|+.+....++........-+...+++...                ...+   .....+.+      .-+
T Consensus       571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~----------------~~~~---~~~~~~~~------~~f  625 (699)
T KOG3665|consen  571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAIS----------------RWLT---SEIRVIND------RSF  625 (699)
T ss_pred             hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhh----------------ccCc---cceeehhh------hhc
Confidence            4 77788888888877644432221111222222333221                1111   11111111      012


Q ss_pred             HHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC-CChhHHHHHHHHHHHh
Q 010080          346 IAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNL  413 (518)
Q Consensus       346 l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~nl  413 (518)
                      .|.+..++. +..+..+..|.|++.|++...++..+.+.+.|+++.+.+.-.. ...+++.++...+.+.
T Consensus       626 ~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  626 FPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             chhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            221444554 3456889999999999999988888889999999988887633 2556777776666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.77  E-value=2.7  Score=46.14  Aligned_cols=199  Identities=15%  Similarity=0.119  Sum_probs=115.4

Q ss_pred             HHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc
Q 010080          276 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS  355 (518)
Q Consensus       276 ~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~  355 (518)
                      +|.+++...++.+..+++.|+...+...+..-...+....++..++|++..........+..     .--...+..++..
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~-----~~~~~~f~~~~~~  568 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFE-----FIDFSVFKVLLNK  568 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHH-----HHHHHHHHHHHhh
Confidence            67788888889999999999999999998755667788899999999986653222111100     0001122223332


Q ss_pred             Chh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH
Q 010080          356 EHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL  434 (518)
Q Consensus       356 ~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l  434 (518)
                      -+. ..-..|+.+++.+...+++.                   ....-+..+...+........+.         . ...
T Consensus       569 w~~~ersY~~~siLa~ll~~~~~~-------------------~~~~~r~~~~~~l~e~i~~~~~~---------~-~~~  619 (699)
T KOG3665|consen  569 WDSIERSYNAASILALLLSDSEKT-------------------TECVFRNSVNELLVEAISRWLTS---------E-IRV  619 (699)
T ss_pred             cchhhHHHHHHHHHHHHHhCCCcC-------------------ccccchHHHHHHHHHHhhccCcc---------c-eee
Confidence            222 44555666666665543221                   01112222222222222111000         0 111


Q ss_pred             HhcCchHH-HHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC-CHHHHHHHHHHHHhhc
Q 010080          435 VGRGCLSG-FIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-NEDLRNMANGLVDKYF  510 (518)
Q Consensus       435 ~~~g~i~~-L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~-~~~i~~~a~~il~~~f  510 (518)
                      .....+.+ +..++. +..+..+..|+.++.+++..-++  ++..+.+.||+..++++-.+. -.++...+..+++...
T Consensus       620 ~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  620 INDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE--YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             hhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh--hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            11222333 445454 35567888999999999976544  788899999999988774332 5567777777776543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.75  E-value=12  Score=40.56  Aligned_cols=304  Identities=14%  Similarity=0.119  Sum_probs=161.9

Q ss_pred             HHHHHHHHhcCChHHHHH-hcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChh
Q 010080          146 AAWCLTNIAAGKQEETKA-LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS  224 (518)
Q Consensus       146 A~~~L~nia~~~~~~~~~-v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~  224 (518)
                      |-|.+..+++...+.... .....|.+=..|.+ ....+...|+.++.++..-.+  |.. .  ..+..|-.++.++...
T Consensus       224 A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~-K~emV~~EaArai~~l~~~~~--r~l-~--pavs~Lq~flssp~~~  297 (865)
T KOG1078|consen  224 AVCMLIRIASELLKENQQADSPLFPFLESCLRH-KSEMVIYEAARAIVSLPNTNS--REL-A--PAVSVLQLFLSSPKVA  297 (865)
T ss_pred             HHHHHHHHHHHHhhhcccchhhHHHHHHHHHhc-hhHHHHHHHHHHHhhccccCH--hhc-c--hHHHHHHHHhcCcHHH
Confidence            555555555332222111 11244555555654 678899999999999876432  211 1  1667777788889999


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHH
Q 010080          225 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL  304 (518)
Q Consensus       225 ~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL  304 (518)
                      ++-.|..+|..++.. .|..    +  ..+=+-|-.++.+.+..+...|.-+|.  -.|....+..+...  +...+.-+
T Consensus       298 lRfaAvRtLnkvAm~-~P~~----v--~~cN~elE~lItd~NrsIat~AITtLL--KTG~e~sv~rLm~q--I~~fv~di  366 (865)
T KOG1078|consen  298 LRFAAVRTLNKVAMK-HPQA----V--TVCNLDLESLITDSNRSIATLAITTLL--KTGTESSVDRLMKQ--ISSFVSDI  366 (865)
T ss_pred             HHHHHHHHHHHHHHh-CCcc----c--cccchhHHhhhcccccchhHHHHHHHH--HhcchhHHHHHHHH--HHHHHHhc
Confidence            999999999999854 2331    1  122233445555555555444444332  23455555554422  23333333


Q ss_pred             ccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCCHHHHHHHH
Q 010080          305 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIH  383 (518)
Q Consensus       305 ~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~~~~~~~li  383 (518)
                       +.+..-+...|+++|++.....              ..+.+..|..+|..+ ....++...-+|.-++..+++....  
T Consensus       367 -sDeFKivvvdai~sLc~~fp~k--------------~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~--  429 (865)
T KOG1078|consen  367 -SDEFKIVVVDAIRSLCLKFPRK--------------HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER--  429 (865)
T ss_pred             -cccceEEeHHHHHHHHhhccHH--------------HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH--
Confidence             1223334456666666654221              124677777777553 3466677777777776655444322  


Q ss_pred             hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHH
Q 010080          384 SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME  463 (518)
Q Consensus       384 ~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~  463 (518)
                         ++..|+..+.+..  ...-+...|.-+-...   ..+|.+ ..+++++         .+.+.-.+..+...+..++.
T Consensus       430 ---~L~~LCefIEDce--~~~i~~rILhlLG~Eg---P~a~~P-skyir~i---------yNRviLEn~ivRaaAv~ala  491 (865)
T KOG1078|consen  430 ---GLEHLCEFIEDCE--FTQIAVRILHLLGKEG---PKAPNP-SKYIRFI---------YNRVILENAIVRAAAVSALA  491 (865)
T ss_pred             ---HHHHHHHHHHhcc--chHHHHHHHHHHhccC---CCCCCc-chhhHHH---------hhhhhhhhhhhHHHHHHHHH
Confidence               3445555555443  2334555555553321   112211 1333333         33333344555666777777


Q ss_pred             HHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080          464 LVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK  508 (518)
Q Consensus       464 ~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~  508 (518)
                      ++....+. ...      ...-.+.+++++.+.+++++|...+..
T Consensus       492 Kfg~~~~~-l~~------sI~vllkRc~~D~DdevRdrAtf~l~~  529 (865)
T KOG1078|consen  492 KFGAQDVV-LLP------SILVLLKRCLNDSDDEVRDRATFYLKN  529 (865)
T ss_pred             HHhcCCCC-ccc------cHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            77622211 111      112356777888888888888666553

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.70  E-value=4.6  Score=38.20  Aligned_cols=94  Identities=12%  Similarity=0.081  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC
Q 010080          144 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN  221 (518)
Q Consensus       144 ~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~  221 (518)
                      ..|+.+|.-++--.+..+...-  .++..|+.+|.....+.++..++.+|-.+..|++.+...+-+.+++..++.++++.
T Consensus       109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~  188 (257)
T PF08045_consen  109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSK  188 (257)
T ss_pred             HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccc
Confidence            3477788888766665555444  48999999996556789999999999999999999999999999999999999965


Q ss_pred             --ChhHHHHHHHHHHHhh
Q 010080          222 --KGSTVRTAAWALSNLI  237 (518)
Q Consensus       222 --~~~~~~~a~~~L~nL~  237 (518)
                        +.+++-.++-.|.-..
T Consensus       189 ~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  189 STDRELRLKCIEFLYFYL  206 (257)
T ss_pred             cccHHHhHHHHHHHHHHH
Confidence              5667666665555443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.57  E-value=6.8  Score=39.69  Aligned_cols=121  Identities=12%  Similarity=0.255  Sum_probs=88.1

Q ss_pred             hhhhhhhhhhc---CCCcccceeeccCCCchhhhHHHHHHHhccCh---hhhHHHHHHHHHHhccCCHHHHHHHHhCCCH
Q 010080          315 PVLRSLGNLVA---GDSSTISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL  388 (518)
Q Consensus       315 ~al~~L~nl~~---~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~---~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i  388 (518)
                      ..++++..+..   +.+...+.+++.     ..++..|..++.+..   +.+-..|+-+++.+....|.....+.++|++
T Consensus        79 ~lLk~l~~~~~~~~~~~~~lrnl~D~-----s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~  153 (379)
T PF06025_consen   79 SLLKFLSHAMQHSGGFGDRLRNLIDS-----SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLI  153 (379)
T ss_pred             HHHHHHHHHhccCCCcccccccccch-----hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCCh
Confidence            34566666655   333445556652     257778888888764   5888999999999999888888899999999


Q ss_pred             HHHHHHhc-C---CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC
Q 010080          389 ALLLHLLS-T---SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD  451 (518)
Q Consensus       389 ~~Li~lL~-~---~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d  451 (518)
                      +.+++.+. .   ++.++-...--+|+-+|-+.           .=.+.+.+.+.++.|++++.+++
T Consensus       154 ~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~-----------~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  154 DAFLDAITAKGILPSSEVLTSLPNVLSAICLNN-----------RGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH-----------HHHHHHHhcChHHHHHHHhCCHH
Confidence            99999998 4   24455555556667777752           33567778899999999887754

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=93.52  E-value=1.9  Score=46.58  Aligned_cols=136  Identities=19%  Similarity=0.195  Sum_probs=82.8

Q ss_pred             chHHHHHHHhccC----ChhHHHHHHHHHHHhhcC---CchhhhHHHhcCchHHHHHHHcc---CCCccchhhhhhhhhh
Q 010080          253 GLLDAILRHLKRA----DEELTTEVAWVVVYLSAL---SNVATSLLVKSGVLQLLVERLAT---SNSLQLLIPVLRSLGN  322 (518)
Q Consensus       253 ~~l~~L~~lL~~~----d~~v~~~a~~~L~~L~~~---~~~~~~~~~~~g~~~~Lv~lL~~---~~~~~v~~~al~~L~n  322 (518)
                      ..+..+..++.++    .+.+...++-+++.+...   ..+.+...+-..+++.+...|..   ..+...+...+++|||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            4556677777643    345566666666655531   11111111123355666665542   3445556788999999


Q ss_pred             hhcCCCcccceeeccCCCchhhhHHHHHHHhc-c--ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--
Q 010080          323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-S--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--  397 (518)
Q Consensus       323 l~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~--~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--  397 (518)
                      +-..                 ..++.|..++. .  ....+|..|+|+|..++...+..        +-+.|+.++.+  
T Consensus       473 ~g~~-----------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~  527 (574)
T smart00638      473 AGHP-----------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRA  527 (574)
T ss_pred             cCCh-----------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCC
Confidence            7533                 25666666665 2  23589999999999997655444        34456666643  


Q ss_pred             CChhHHHHHHHHHHHh
Q 010080          398 SPFDIKKEVAYVLGNL  413 (518)
Q Consensus       398 ~~~~v~~eA~~aL~nl  413 (518)
                      .++++|..|..+|...
T Consensus       528 e~~EvRiaA~~~lm~t  543 (574)
T smart00638      528 EPPEVRMAAVLVLMET  543 (574)
T ss_pred             CChHHHHHHHHHHHhc
Confidence            5678999888888664

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.50  E-value=7.2  Score=39.50  Aligned_cols=154  Identities=15%  Similarity=0.179  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHhhc-C-CCCCchhhHHHhhchHHHHHHHhccCC---hhHHHHHHHHHHHhhcCCchhhhHHHhcCchH
Q 010080          224 STVRTAAWALSNLIK-G-PDPKPATELIKVDGLLDAILRHLKRAD---EELTTEVAWVVVYLSALSNVATSLLVKSGVLQ  298 (518)
Q Consensus       224 ~~~~~a~~~L~nL~~-~-~~~~~~~~~i~~~~~l~~L~~lL~~~d---~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~  298 (518)
                      .+.+..+.++..+.. + ......+.++.....+..|..++.+..   +.+...++-.++.+..+++.....+.+.|+.+
T Consensus        75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~  154 (379)
T PF06025_consen   75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID  154 (379)
T ss_pred             HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence            455666666666666 2 212222333321455666667776543   67888999999999988888899999999999


Q ss_pred             HHHHHHc-c--CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh--hhHH-HHHHHHHH--
Q 010080          299 LLVERLA-T--SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR--VLKK-EAAWVLSN--  370 (518)
Q Consensus       299 ~Lv~lL~-~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~--~i~~-~a~~~Lsn--  370 (518)
                      .+++.+. .  -++.+++...-.+++.||-... ..+.+.+      .+.++.++.++.+++.  .++. +.+..+++  
T Consensus       155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~------~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~  227 (379)
T PF06025_consen  155 AFLDAITAKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKS------SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSF  227 (379)
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHh------cChHHHHHHHhCCHHHHHHhcccchHHHHHHHH
Confidence            9999885 1  1344455555566666665543 3334443      3588888888877653  2222 44544544  


Q ss_pred             --hccCCHHHHHHHHh
Q 010080          371 --IAAGSVEHKQLIHS  384 (518)
Q Consensus       371 --l~~~~~~~~~~li~  384 (518)
                        |.++.|.....+++
T Consensus       228 DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  228 DELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHccCHHHHHHHHH
Confidence              44555555554444

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.40  E-value=12  Score=40.06  Aligned_cols=108  Identities=14%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCch
Q 010080          207 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV  286 (518)
Q Consensus       207 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~  286 (518)
                      -.|.+..+++...+++..++..++-.|.-+... .... .+.+ -.+....+..-+.+..+.|+..|..||+++-..+.+
T Consensus        83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~ei-dd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d  159 (892)
T KOG2025|consen   83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEI-DDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD  159 (892)
T ss_pred             HHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-cccc-CHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence            345566677777788889999999888888752 1222 2222 246777777777788899999999999999853221


Q ss_pred             hhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhh
Q 010080          287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN  322 (518)
Q Consensus       287 ~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~n  322 (518)
                      .     +..+...++.++...++++|+..|+..|.+
T Consensus       160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            1     235667788888788999999988766553

>PRK14707 hypothetical protein; Provisional

Probab=93.32  E-value=25  Score=42.77  Aligned_cols=341  Identities=15%  Similarity=0.079  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHh-cCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHH
Q 010080           96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL-AFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIA  173 (518)
Q Consensus        96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L-~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~  173 (518)
                      ......++..|..+++.++ .....+ ....|-.++..+ +-++++.. ..|+..|...-.+.+.....+- ..|-..+.
T Consensus       178 ~~~c~~aa~~la~~~~~~d-~~~~~~-~~q~ia~~lNa~sKWp~~~~c-~~aa~~la~~l~~~~~l~~~~~~q~va~~lN  254 (2710)
T PRK14707        178 NPDCQAVAPRFAALVASDD-RLRSAM-DAQGVATVLNALCKWPDTPDC-GNAVSALAERLADESRLRNELKPQELGNALN  254 (2710)
T ss_pred             CchHHHHHHHHHHHhcCCh-hhhccc-chHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHcCcHHHHHhCChHHHHHHHH
Confidence            3455566777777676654 222222 333444444444 44554544 3466666655545555555554 37778888


Q ss_pred             hhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHH-hhcCCCCCchhhHHHhh
Q 010080          174 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN-LIKGPDPKPATELIKVD  252 (518)
Q Consensus       174 lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n-L~~~~~~~~~~~~i~~~  252 (518)
                      .|...++..+..+++-+|.-=..+.+..++.+-..++-..|-.|-+-++..+.+.++-.|.. |..  ++..... +...
T Consensus       255 ~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~--d~~l~~~-~~~~  331 (2710)
T PRK14707        255 ALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD--DPELCKA-LNAR  331 (2710)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc--cHhhhhc-cchH
Confidence            88777777677776666654333456677666655554445555555677777777766654 443  2332221 1112


Q ss_pred             chHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccc
Q 010080          253 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS  332 (518)
Q Consensus       253 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~  332 (518)
                      ++-..|..+-+.+|..+-..++-+|..=...+++..+.+--. .+..+++.|++=++..+...+...|..=+.++.+..+
T Consensus       332 ~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~  410 (2710)
T PRK14707        332 GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRK  410 (2710)
T ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhh
Confidence            222233333346666666666555554333355555555333 3455555565555555555555555444444443333


Q ss_pred             eeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-cCCChhHHHHHHHHHH
Q 010080          333 DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLG  411 (518)
Q Consensus       333 ~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~eA~~aL~  411 (518)
                      . ++.     .|+-..|-.+-+-++..+...+...|.--.+...+.++.+--.+ +...++.| +-+|..+..+|+..|.
T Consensus       411 ~-~~~-----Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La  483 (2710)
T PRK14707        411 G-LDP-----QGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALA  483 (2710)
T ss_pred             h-cch-----hhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHH
Confidence            2 321     34545555555667777777777777766667766666554444 33344444 6688888888888776


Q ss_pred             HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080          412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ  460 (518)
Q Consensus       412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~  460 (518)
                      --..+.          .+..+.|--.++...|-.+-+.+|......++.
T Consensus       484 ~~l~~~----------~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~  522 (2710)
T PRK14707        484 ARLAHE----------RRLRKALKPQEVVIALHSLSKWPDTPICAEAAS  522 (2710)
T ss_pred             HHhccc----------HHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            544421          133444444556666666666777665444433

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.32  E-value=2.7  Score=38.96  Aligned_cols=114  Identities=15%  Similarity=0.121  Sum_probs=84.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH--------HHH
Q 010080           92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE--------TKA  163 (518)
Q Consensus        92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~--------~~~  163 (518)
                      ++..+..++.++..+-.++..++..-+...+..++||..++.+..++ +.-+.-|+.++..|-.++..-        +-.
T Consensus       135 ~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS-elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~  213 (293)
T KOG3036|consen  135 SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS-ELSKTVATFILQKILLDDVGLYYICQTAERFS  213 (293)
T ss_pred             CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc-HHHHHHHHHHHHHHhhccccHHHHHHhHHHHH
Confidence            45677889999999999988887666666678999999999999876 445567999999888654321        111


Q ss_pred             hc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHh
Q 010080          164 LL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS  207 (518)
Q Consensus       164 v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~  207 (518)
                      .+ ..+..++..|.+.++..+...+++|.-+++. ++..|..+..
T Consensus       214 av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL~~  257 (293)
T KOG3036|consen  214 AVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAALRS  257 (293)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHHHh
Confidence            12 2455566666666789999999999999986 6777765543

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.31  E-value=0.53  Score=51.33  Aligned_cols=170  Identities=18%  Similarity=0.177  Sum_probs=93.8

Q ss_pred             hhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc----CChhHHHHHHHHHHHhhcC---
Q 010080          211 LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVAWVVVYLSAL---  283 (518)
Q Consensus       211 i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~---  283 (518)
                      +..+..++.+....-.+ +.+.|..|.... ..|..      ..+..+..++.+    .++.+...|+-+++.|...   
T Consensus       397 v~~i~~~I~~~~~~~~e-a~~~l~~l~~~~-~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  397 VKFIKDLIKSKKLTDDE-AAQLLASLPFHV-RRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHTT-S-HHH-HHHHHHHHHHT------H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHH-HHHHHHHHHhhc-CCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            44455566554433333 334444444332 12333      344555555543    3445666666666666531   


Q ss_pred             Cc------hhhhHHHhcCchHHHHHHHc---cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc
Q 010080          284 SN------VATSLLVKSGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK  354 (518)
Q Consensus       284 ~~------~~~~~~~~~g~~~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~  354 (518)
                      ..      ......+...+++.+...|.   ...+...+..++++|||+-..                 ..++.|..++.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------------~~i~~l~~~i~  531 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------------ESIPVLLPYIE  531 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------------GGHHHHHTTST
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------------hhhHHHHhHhh
Confidence            10      00111122345566666554   345556778899999998422                 37788888886


Q ss_pred             cC---hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CChhHHHHHHHHHHHh
Q 010080          355 SE---HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNL  413 (518)
Q Consensus       355 ~~---~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~eA~~aL~nl  413 (518)
                      ..   ...+|..|+|++..++...+..        +.+.|..++.+  .++++|-.|..+|...
T Consensus       532 ~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~  587 (618)
T PF01347_consen  532 GKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC  587 (618)
T ss_dssp             TSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred             hccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence            65   5689999999999997777654        34556777744  5678998888877663

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.18  E-value=4.4  Score=37.65  Aligned_cols=143  Identities=14%  Similarity=0.086  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCC----CChHHHHHHHHHHHHHhcCC-hHHHHHhc--C
Q 010080           94 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG----SPDEQLLEAAWCLTNIAAGK-QEETKALL--P  166 (518)
Q Consensus        94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~----~~~~~~~eA~~~L~nia~~~-~~~~~~v~--~  166 (518)
                      ........|+.-|.-+.|+.+..  ..++++.+--.|-.||...    ..+.+...++.+++.+...+ .+....+.  +
T Consensus        91 ~qsnRVcnaL~LlQcvASHpdTr--~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~Te  168 (293)
T KOG3036|consen   91 AQSNRVCNALALLQCVASHPDTR--RAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTE  168 (293)
T ss_pred             cccchHHHHHHHHHHHhcCcchH--HHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhh
Confidence            34556677888887777765433  5688887766777777632    22344456888999888544 44444444  7


Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH-------hcCChhHHH-hhhCCCChhHHHHHHHHHHHhhc
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL-------SQGALPPLA-RMMLPNKGSTVRTAAWALSNLIK  238 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~-------~~g~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~  238 (518)
                      .||..++.+.. ++..-+..|.+++..|-.|+.-.--...       -.-.+..++ ++.+.++..+..++..+..+|+.
T Consensus       169 IVPlCLrime~-GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  169 IVPLCLRIMES-GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             hHHHHHHHHhc-ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            99999999988 6778889999999999887642211111       111223333 34445688999999999999985


Q ss_pred             C
Q 010080          239 G  239 (518)
Q Consensus       239 ~  239 (518)
                      +
T Consensus       248 n  248 (293)
T KOG3036|consen  248 N  248 (293)
T ss_pred             C
Confidence            4

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=92.99  E-value=6.4  Score=43.64  Aligned_cols=210  Identities=18%  Similarity=0.149  Sum_probs=117.8

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-----ChhHHHHHHHHHHHhhcCCC
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~  241 (518)
                      +...+|.-|.+....+.-..-.+.++++          +.++|++..|+.++.+-     ...+.......|...|.-  
T Consensus        85 AtE~~v~~l~~~~~~~~d~e~~~~~~~v----------~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv--  152 (802)
T PF13764_consen   85 ATEEFVESLEDDSEEEEDPEQEFKIASV----------LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV--  152 (802)
T ss_pred             cchhhHhhccCccccccCHHHHHHHHHH----------hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh--
Confidence            7778888776632222222222333333          33578999999998742     356777777777777754  


Q ss_pred             CCchhhHHHhhchHHHHHHHhc----cCC----hhHHHHHHHHHHHhhcCCc-hhhh---HHHh--------cCchHHHH
Q 010080          242 PKPATELIKVDGLLDAILRHLK----RAD----EELTTEVAWVVVYLSALSN-VATS---LLVK--------SGVLQLLV  301 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~----~~d----~~v~~~a~~~L~~L~~~~~-~~~~---~~~~--------~g~~~~Lv  301 (518)
                       +.++..+...++++.|++.+.    .+.    .++....+-.+..|..... ....   ....        ..-+..++
T Consensus       153 -~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL  231 (802)
T PF13764_consen  153 -KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLL  231 (802)
T ss_pred             -HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHH
Confidence             345555556899999988775    333    4555555555555443111 1110   0001        11244455


Q ss_pred             HHHcc---CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-----ChhhhHHH-HHHHHHHhc
Q 010080          302 ERLAT---SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-----EHRVLKKE-AAWVLSNIA  372 (518)
Q Consensus       302 ~lL~~---~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-----~~~~i~~~-a~~~Lsnl~  372 (518)
                      +.+.+   ..++.+....+|+|.+++.|+++..+.+++.       +-|++ .+=..     .+..+.-+ -|.+..+|-
T Consensus       232 ~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-------F~p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~  303 (802)
T PF13764_consen  232 ERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-------FKPYL-DFDKFDEEHSPDEQFKLECFCEIAEGIP  303 (802)
T ss_pred             HHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-------HHHhc-ChhhcccccCchHHHHHHHHHHHHhcCC
Confidence            55531   1356677889999999999998776655541       22222 22111     11122222 222233332


Q ss_pred             cC--CHHHHHHHHhCCCHHHHHHHhcC
Q 010080          373 AG--SVEHKQLIHSSEALALLLHLLST  397 (518)
Q Consensus       373 ~~--~~~~~~~li~~~~i~~Li~lL~~  397 (518)
                      ..  +....+.+++.|++...++.|..
T Consensus       304 ~~~~G~~LK~~Il~~GIv~~a~~YL~~  330 (802)
T PF13764_consen  304 NNSNGNRLKDKILESGIVQDAIDYLLK  330 (802)
T ss_pred             CCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence            22  23567778999999999988854

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=92.94  E-value=16  Score=39.53  Aligned_cols=301  Identities=13%  Similarity=0.078  Sum_probs=165.8

Q ss_pred             HHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCC-------CCHHHHHHHHHHHHhhhC--CChhhHHHHHhcCChhHHH
Q 010080          145 EAAWCLTNIAAGKQEETKALLPALPLLIAHLGEK-------SSSPVAEQCAWALGNVAG--EGEEFRNVLLSQGALPPLA  215 (518)
Q Consensus       145 eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~-------~~~~v~~~a~~~L~nla~--d~~~~r~~~~~~g~i~~L~  215 (518)
                      .|+.++.-+.+...  .....|.++.++..|..+       .++.-.+.|++.+++|..  +-+..-.-+++.-+++-++
T Consensus       389 aal~fl~~~~sKrk--e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~  466 (970)
T COG5656         389 AALFFLIISKSKRK--EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI  466 (970)
T ss_pred             HHHHHHHHHhcccc--hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence            45556655554432  233458899999988431       234556788888888764  2222233445555566666


Q ss_pred             hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcC
Q 010080          216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG  295 (518)
Q Consensus       216 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g  295 (518)
                      ..++++.--++.-+|..++.+...- +.    ......+.+...+++++.+-.++..|+-|+..+..+.  .....+...
T Consensus       467 P~f~s~ygfL~Srace~is~~eeDf-kd----~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sah  539 (970)
T COG5656         467 PAFRSNYGFLKSRACEFISTIEEDF-KD----NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAH  539 (970)
T ss_pred             HhhcCcccchHHHHHHHHHHHHHhc-cc----chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhh
Confidence            6777777778888999998885432 11    1113467777788888888889999999999888643  233333333


Q ss_pred             chHHHHHHHccCC--CccchhhhhhhhhhhhcCCCcccceee-cc-CCCchhhhHHHHHHHhccC-h-----hhhHHHHH
Q 010080          296 VLQLLVERLATSN--SLQLLIPVLRSLGNLVAGDSSTISDVL-VP-GHGITDQVIAVLVKCLKSE-H-----RVLKKEAA  365 (518)
Q Consensus       296 ~~~~Lv~lL~~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i-~~-G~~~~~~~l~~L~~lL~~~-~-----~~i~~~a~  365 (518)
                      +.+.+-++|.-++  +.+++..   ++-.++..-.++..... +. | ..-..++..-..++..+ +     ..=+..|.
T Consensus       540 Vp~tmekLLsLSn~feiD~LS~---vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaas  615 (970)
T COG5656         540 VPETMEKLLSLSNTFEIDPLSM---VMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAAS  615 (970)
T ss_pred             hhHHHHHHHHhcccccchHHHH---HHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHH
Confidence            3333333442122  2222222   23333322222211110 00 0 00011222333333322 1     12234455


Q ss_pred             HHHHHhcc------CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc
Q 010080          366 WVLSNIAA------GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC  439 (518)
Q Consensus       366 ~~Lsnl~~------~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~  439 (518)
                      ..|+.+.+      ..+...+.+ .....|.+--+|++.-.+.-.||+-.|-+.+...          ++ +. =+.=|+
T Consensus       616 GiL~T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~s----------ke-I~-pimwgi  682 (970)
T COG5656         616 GILRTIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFMS----------KE-IE-PIMWGI  682 (970)
T ss_pred             HHHHHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH----------HH-hh-hhhhHH
Confidence            55555443      123333333 3457888888889998999999999988775421          00 11 112255


Q ss_pred             hHHHHHhhccCCH-HHHHHHHHHHHHHHccCCC
Q 010080          440 LSGFIDLVRSADI-EAARLGLQFMELVLRGMPN  471 (518)
Q Consensus       440 i~~L~~lL~~~d~-~~~~~~l~~l~~il~~~~~  471 (518)
                      ...+.+++...++ .....+..++.|++..+.+
T Consensus       683 ~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~  715 (970)
T COG5656         683 FELLLNLLIDEITAVYSEEVADALDNFITYGKT  715 (970)
T ss_pred             HHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence            6666666666664 5566777889999987644

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=92.91  E-value=2.9  Score=42.38  Aligned_cols=167  Identities=14%  Similarity=0.069  Sum_probs=104.8

Q ss_pred             HHHHHH-HHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc--CChhHHHhhh
Q 010080          143 LLEAAW-CLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMM  218 (518)
Q Consensus       143 ~~eA~~-~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~ll  218 (518)
                      +.+|.. ...-++.++...-...+ ..+..++..|..+.+..++..|+..|+.++...+   ..+.+.  -+|..++..-
T Consensus       304 ~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~---~~l~DstE~ai~K~Leaa  380 (516)
T KOG2956|consen  304 RKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP---ARLFDSTEIAICKVLEAA  380 (516)
T ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch---HhhhchHHHHHHHHHHHH
Confidence            345766 44445566655656555 3777888888876788899999999999987432   122221  1233444444


Q ss_pred             CCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHH--hcCc
Q 010080          219 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV--KSGV  296 (518)
Q Consensus       219 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~--~~g~  296 (518)
                      ...+.++.+.|.-+...+.....|.         ..+..+..++...|......++..+..++..-+  .+.+.  -..+
T Consensus       381 ~ds~~~v~~~Aeed~~~~las~~P~---------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~--~EeL~~ll~di  449 (516)
T KOG2956|consen  381 KDSQDEVMRVAEEDCLTTLASHLPL---------QCIVNISPLILTADEPRAVAVIKMLTKLFERLS--AEELLNLLPDI  449 (516)
T ss_pred             hCCchhHHHHHHHHHHHHHHhhCch---------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC--HHHHHHhhhhh
Confidence            4556666666655544433332232         233445555556787777777778888876322  22221  2467


Q ss_pred             hHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080          297 LQLLVERLATSNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       297 ~~~Lv~lL~~~~~~~v~~~al~~L~nl~  324 (518)
                      .|.+++.. ++.+..|+..|..||..++
T Consensus       450 aP~~iqay-~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  450 APCVIQAY-DSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             hhHHHHHh-cCchHHhhhhHHHhHHHHH
Confidence            88888877 5778889999999988876

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=92.64  E-value=3.3  Score=39.06  Aligned_cols=142  Identities=19%  Similarity=0.158  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH
Q 010080          183 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA  257 (518)
Q Consensus       183 v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~  257 (518)
                      -...|+-.|-.+|. .++.|..+++..+.-.|..+|+..     -..++-.....++.|...+++ ....++...+++|.
T Consensus        66 RVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~-evi~fLl~tEiipl  143 (262)
T PF04078_consen   66 RVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDP-EVISFLLQTEIIPL  143 (262)
T ss_dssp             HHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--H-HHHHHHHCTTHHHH
T ss_pred             HHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcH-HHHHHHHhhchHHH
Confidence            34566667777887 789999999999887788888743     256777888888999976543 33445667899999


Q ss_pred             HHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh--------cCchHHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080          258 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--------SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD  327 (518)
Q Consensus       258 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  327 (518)
                      .++.+..+++--..-|...+..+.. ++...+.+..        ..++..++..+...+++.+...+++|--.++...
T Consensus       144 cLr~me~GselSKtvAtfIlqKIL~-dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  144 CLRIMEFGSELSKTVATFILQKILL-DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHHHHHS-HHHHHHHHHHHHHHHH-SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHc-chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            9999999887777777777665554 2223332221        2456667766666777778888888888887554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PRK14707 hypothetical protein; Provisional

Probab=92.56  E-value=31  Score=41.97  Aligned_cols=384  Identities=16%  Similarity=0.102  Sum_probs=206.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhc-CCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHH
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA-FGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPL  170 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~-~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~  170 (518)
                      ..+.....+|+..+-..+..+. .++... ..--+..|+..++ ..++...+.-+....+.++++. ..+..+- .+|..
T Consensus       133 ~~~~~~c~~a~a~i~~~~~~~~-~~~~~l-~~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d-~~~~~~~~q~ia~  209 (2710)
T PRK14707        133 NLDSGRCERAVARLARHLRRED-KARQTL-NAQNISLALNAFSKWSDNPDCQAVAPRFAALVASDD-RLRSAMDAQGVAT  209 (2710)
T ss_pred             CCCchHHHHHHHHHHHHhcccc-chhhhh-ccccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCh-hhhcccchHHHHH
Confidence            3455566777777776665543 222212 2334555666665 3333444444555555666544 3444444 37888


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHH-HhhcCCCCCchhhHH
Q 010080          171 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS-NLIKGPDPKPATELI  249 (518)
Q Consensus       171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~i  249 (518)
                      ++.-++..++..-.++++..|.-...+....+..+-..|+-..|-.+-+=++....++++.++. .+.+.  +.- +..+
T Consensus       210 ~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~--~~l-~~al  286 (2710)
T PRK14707        210 VLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD--PGL-RKAL  286 (2710)
T ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh--HHH-HHhc
Confidence            8888877666556666666665544334566666666665555555555556555555555554 45533  222 1122


Q ss_pred             HhhchHHHHHHHhccCChhHHHHHHHHHH-HhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC
Q 010080          250 KVDGLLDAILRHLKRADEELTTEVAWVVV-YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  328 (518)
Q Consensus       250 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  328 (518)
                      .....-..|..+-+..|..+-..+.-.|. .|.+ +.+..+.+ +.-.+..+++.|++=++..+...+...|..=+..++
T Consensus       287 ~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~  364 (2710)
T PRK14707        287 DPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADP  364 (2710)
T ss_pred             CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCH
Confidence            11222233333444677777666666554 4444 44444444 333455556666555555555555555554444444


Q ss_pred             cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-cCCChhHHHHHH
Q 010080          329 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVA  407 (518)
Q Consensus       329 ~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~eA~  407 (518)
                      ...+.+ +.     .|+-..|-.+-+-++......|+..|.-=..+.++..+.+--.| +..+++.| +-++..+...|+
T Consensus       365 ~l~~~l-~~-----q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWPd~~~C~~aa  437 (2710)
T PRK14707        365 ELRKDL-EP-----QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWPDLPICGQAV  437 (2710)
T ss_pred             hhhccc-ch-----hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCCcchhHHHHH
Confidence            444332 21     23333444444556666666666666555456666666554444 45555555 668989999888


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHH
Q 010080          408 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM  487 (518)
Q Consensus       408 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l  487 (518)
                      .+|.--..+.          .+-++.|--.++...|-.+-+.+|..+...+.+.|..=+-....  -++.+.-.+....|
T Consensus       438 ~~lA~~la~d----------~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~--l~~a~~~q~~~~~L  505 (2710)
T PRK14707        438 SALAGRLAHD----------TELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERR--LRKALKPQEVVIAL  505 (2710)
T ss_pred             HHHHHHHhcc----------HHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH--HHhhcCHHHHHHHH
Confidence            8886655532          13334444445666666666788988887776666544432111  12222222333455


Q ss_pred             HHHhcCCCHHHHHHHH
Q 010080          488 ERFQFHENEDLRNMAN  503 (518)
Q Consensus       488 ~~L~~~~~~~i~~~a~  503 (518)
                      ..|...++...+..|.
T Consensus       506 ~aLSK~Pd~~~c~~A~  521 (2710)
T PRK14707        506 HSLSKWPDTPICAEAA  521 (2710)
T ss_pred             HHhhcCCCcHHHHHHH
Confidence            6666667666665553

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.39  E-value=0.67  Score=47.82  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=79.3

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH
Q 010080          125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV  204 (518)
Q Consensus       125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~  204 (518)
                      |+|..|+++--++.++++.+.|.-+|+-+|..++       +.++..+.+|..+.|..|+...+.+||--|...-..   
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~---  620 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK---  620 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCc-------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH---
Confidence            4455555543344445565666677776666544       256667777777678888888888888766532111   


Q ss_pred             HHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh
Q 010080          205 LLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE  267 (518)
Q Consensus       205 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~  267 (518)
                          -++..|-.++..++.-+++.|+-+++.+.-..+|+....   ..+++..+.+++....+
T Consensus       621 ----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~---v~~I~k~f~~vI~~Khe  676 (926)
T COG5116         621 ----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN---VKRIIKKFNRVIVDKHE  676 (926)
T ss_pred             ----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh---HHHHHHHHHHHHhhhhH
Confidence                134555666677777778888888887665555554443   35777778877764433

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.06  E-value=0.55  Score=41.13  Aligned_cols=147  Identities=16%  Similarity=0.206  Sum_probs=91.2

Q ss_pred             hHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          168 LPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       168 v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      +..++..|.. ...++++.++.-++..+-   +..++...+ -+-..+-.++...+.+-...+..++..+.-+. |..+.
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHH
Confidence            4456666553 356789999999998884   233333221 12233334454444556677777888876553 44455


Q ss_pred             hHHHhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCcc-chhhhhhhhh
Q 010080          247 ELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQ-LLIPVLRSLG  321 (518)
Q Consensus       247 ~~i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~-v~~~al~~L~  321 (518)
                      .++...|+++.+..++.  ..+..+...++-+|..=|. +......+ ....++.|-+.+..+++.. ++..|+-+|.
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            56667899999999999  7788888888888876553 33344444 4455788888774344444 5665555544

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=91.91  E-value=3  Score=39.33  Aligned_cols=137  Identities=17%  Similarity=0.201  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC----ccchhhhhhhhhhhhcCCCccc-ceeeccCCCchhhhH
Q 010080          272 EVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS----LQLLIPVLRSLGNLVAGDSSTI-SDVLVPGHGITDQVI  346 (518)
Q Consensus       272 ~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~----~~v~~~al~~L~nl~~~~~~~~-~~~i~~G~~~~~~~l  346 (518)
                      +++..|..++. +++....++++.+.-.|..+|.....    +.++...+.++|.++..++... ..+++      ..++
T Consensus        69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~------tEii  141 (262)
T PF04078_consen   69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ------TEII  141 (262)
T ss_dssp             HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC------TTHH
T ss_pred             HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh------hchH
Confidence            34444445665 66677788888888788888853221    2356788999999997665443 34443      4799


Q ss_pred             HHHHHHhccChhhhHHHHHHHHHHhccCC---------HHHHHHHHhCCCHHHHHHHh-cCCChhHHHHHHHHHHHhcCC
Q 010080          347 AVLVKCLKSEHRVLKKEAAWVLSNIAAGS---------VEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       347 ~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~---------~~~~~~li~~~~i~~Li~lL-~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      |..+..|..++.--|.-|.+++..|....         .+...++..  ++..++..| ..+++.+-|....+-..++.+
T Consensus       142 plcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  142 PLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            99999999998888888999998887543         233333332  444544444 677889999999999999876


Q ss_pred             C
Q 010080          417 P  417 (518)
Q Consensus       417 ~  417 (518)
                      +
T Consensus       220 p  220 (262)
T PF04078_consen  220 P  220 (262)
T ss_dssp             T
T ss_pred             H
Confidence            4

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=91.77  E-value=12  Score=36.11  Aligned_cols=209  Identities=15%  Similarity=0.226  Sum_probs=137.4

Q ss_pred             HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC--CchhhHHH-hhchHHHHHHHhccC-ChhHHHHHHHHHH
Q 010080          203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPATELIK-VDGLLDAILRHLKRA-DEELTTEVAWVVV  278 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~i~-~~~~l~~L~~lL~~~-d~~v~~~a~~~L~  278 (518)
                      ..+...|.++.|+..+..-+-+-+..++....|+-+....  .+..+.+. ....++.|+.-  .. .+++...+-..|.
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHH
Confidence            4566788899999988877777888888888888764321  12222221 22344444443  23 2555555555555


Q ss_pred             HhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh
Q 010080          279 YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR  358 (518)
Q Consensus       279 ~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~  358 (518)
                      .... .+.-.+.+..+.-+.....+. ..+.-++...|..+...+.+........++...  .+.-+..+.-.++.+++.
T Consensus       151 Ecir-he~LakiiL~s~~~~~FF~~v-q~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n--~d~ff~e~~~~Ll~s~Ny  226 (342)
T KOG1566|consen  151 ECIR-HEFLAKIILESTNFEKFFLYV-QLPNFDIASDAFSTFKELLTRHKSVVAEFLIRN--YDNFFAEVYEKLLRSENY  226 (342)
T ss_pred             HHHh-hHHHHHHHHcchhHHHHHHHH-hccchHHHHHHHHHHHHHHHHhHHHHHHHHHhC--hhhhHHHHHHHHhcccce
Confidence            4444 344556666777777777766 467778888888888888876654443333211  001123446778889999


Q ss_pred             hhHHHHHHHHHHhccCC--HH-HHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080          359 VLKKEAAWVLSNIAAGS--VE-HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       359 ~i~~~a~~~Lsnl~~~~--~~-~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  417 (518)
                      -+++.+..+++.+.-+.  .. ..+++.+..-+..++.+|+.....+|-||-.+..-...++
T Consensus       227 vtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  227 VTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             ehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            99999999999987653  22 2334444467899999999999999999999988888765

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=91.61  E-value=1.6  Score=39.14  Aligned_cols=145  Identities=18%  Similarity=0.148  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCchhh----HH-----HhhchH-HHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhc
Q 010080          225 TVRTAAWALSNLIKGPDPKPATE----LI-----KVDGLL-DAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS  294 (518)
Q Consensus       225 ~~~~a~~~L~nL~~~~~~~~~~~----~i-----~~~~~l-~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~  294 (518)
                      ++..|..+|..+++..+++...-    ++     ...+.- +.+.-++.++++.++..|+.+|..|.++...+....-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            45667777777776533331110    00     011222 233445567888999999999999998875555444321


Q ss_pred             C-------------------chHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc
Q 010080          295 G-------------------VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS  355 (518)
Q Consensus       295 g-------------------~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~  355 (518)
                      .                   +-..|+..|....+..+....++++..++...+...-.   .|  +-..++..+..++.+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~--ll~~~v~~v~~~l~~  156 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PG--LLTEVVTQVRPLLRH  156 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---Hh--HHHHHHHHHHHHHhc
Confidence            1                   11345555555667788899999999999888754321   11  112355566677788


Q ss_pred             ChhhhHHHHHHHHHHhccC
Q 010080          356 EHRVLKKEAAWVLSNIAAG  374 (518)
Q Consensus       356 ~~~~i~~~a~~~Lsnl~~~  374 (518)
                      .++.++..+..+++-+.+-
T Consensus       157 ~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  157 RDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             CCCcHHHHHHHHHHHHHcC
Confidence            9999999999999888764

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=91.58  E-value=0.86  Score=41.25  Aligned_cols=125  Identities=16%  Similarity=0.104  Sum_probs=77.1

Q ss_pred             ChhHHHHHHHHHHHhhcCCchhhhHHHh----------------cCchHHHHHHHcc-----CCCccchhhhhhhhhhhh
Q 010080          266 DEELTTEVAWVVVYLSALSNVATSLLVK----------------SGVLQLLVERLAT-----SNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       266 d~~v~~~a~~~L~~L~~~~~~~~~~~~~----------------~g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~  324 (518)
                      +......+|-.|+||+..+ ..+..+++                ...+..|++.+..     .+...-......++.|++
T Consensus         8 ~~~~adl~~MLLsNlT~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS   86 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSD-SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS   86 (192)
T ss_pred             CcchHHHHHHHHHHhccch-HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence            3345556677777777632 23332222                2356777877754     122333456777888887


Q ss_pred             cCCCcccceeeccCCCchhhh--HHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHh---CCCHHHHHHHhcC
Q 010080          325 AGDSSTISDVLVPGHGITDQV--IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHS---SEALALLLHLLST  397 (518)
Q Consensus       325 ~~~~~~~~~~i~~G~~~~~~~--l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~---~~~i~~Li~lL~~  397 (518)
                      .... ..+.+++.    +.+.  +..|+.++.+.+..-|..++.+|-|+|.....+ ..++.   .+++|.|+--|..
T Consensus        87 ~~~~-gR~~~l~~----~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaG  158 (192)
T PF04063_consen   87 QLPE-GRQFFLDP----QRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAG  158 (192)
T ss_pred             CCHH-HHHHHhCc----hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccC
Confidence            6542 23334432    2234  788888888887777788999999999876555 44443   3677777766653

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.53  E-value=3  Score=45.39  Aligned_cols=215  Identities=11%  Similarity=0.124  Sum_probs=129.2

Q ss_pred             CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH
Q 010080          179 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI  258 (518)
Q Consensus       179 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L  258 (518)
                      +-..++-.++..|..+...- +....+...+++...+..+.+.++-+.-+|...+..||.--          ...++|-+
T Consensus       739 ~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy----------~e~il~dL  807 (982)
T KOG4653|consen  739 DQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY----------PEDILPDL  807 (982)
T ss_pred             CcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc----------chhhHHHH
Confidence            44567888888999888733 55566778889999999999999999999999999999541          23566766


Q ss_pred             HHH-hccCC---hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccccee
Q 010080          259 LRH-LKRAD---EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV  334 (518)
Q Consensus       259 ~~l-L~~~d---~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~  334 (518)
                      ... .+..+   .+.+.-+=-++.++...-.+...--.+ -++...+..+ .+++...+..++..+|+++.-...+...+
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gv-repd~~~RaSS~a~lg~Lcq~~a~~vsd~  885 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGV-REPDHEFRASSLANLGQLCQLLAFQVSDF  885 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhc-CCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence            663 32211   121112223333333211111111111 2233334433 35566678899999999996654433322


Q ss_pred             eccCCCchhhhHHHHHHHhcc-ChhhhHHHHHHHHHHhccCCHHHHHHHHh---CCCHHHHHHHhc-CCChhHHHHHHHH
Q 010080          335 LVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHS---SEALALLLHLLS-TSPFDIKKEVAYV  409 (518)
Q Consensus       335 i~~G~~~~~~~l~~L~~lL~~-~~~~i~~~a~~~Lsnl~~~~~~~~~~li~---~~~i~~Li~lL~-~~~~~v~~eA~~a  409 (518)
                      +       +.++..++.+... +.+-+|+.|...+..+-.|.....-.+..   .+....+..+.. +.+..++..|+.+
T Consensus       886 ~-------~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~  958 (982)
T KOG4653|consen  886 F-------HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC  958 (982)
T ss_pred             H-------HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            2       2455556666554 45689999999999998876443333321   123444444443 3455577777777


Q ss_pred             HHHh
Q 010080          410 LGNL  413 (518)
Q Consensus       410 L~nl  413 (518)
                      +-.+
T Consensus       959 leei  962 (982)
T KOG4653|consen  959 LEEI  962 (982)
T ss_pred             HHHH
Confidence            6554

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=91.52  E-value=1.5  Score=39.62  Aligned_cols=72  Identities=19%  Similarity=0.155  Sum_probs=51.6

Q ss_pred             hhHHHHHHHhcc------ChhhhHHHHHHHHHHhccCCHHHHHHHHhC--CC--HHHHHHHhcCCChhHHHHHHHHHHHh
Q 010080          344 QVIAVLVKCLKS------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSS--EA--LALLLHLLSTSPFDIKKEVAYVLGNL  413 (518)
Q Consensus       344 ~~l~~L~~lL~~------~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~--~~--i~~Li~lL~~~~~~v~~eA~~aL~nl  413 (518)
                      ..+..|+.++..      ....-....+.+++|++.. ++.++.+++.  +.  +..|+-.+++.+..-|.-++.+|.|+
T Consensus        52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc  130 (192)
T PF04063_consen   52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC  130 (192)
T ss_pred             HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence            567777777754      2234456688999999864 5777788764  33  66777777878655566788999999


Q ss_pred             cCC
Q 010080          414 CVS  416 (518)
Q Consensus       414 ~~~  416 (518)
                      |..
T Consensus       131 cFd  133 (192)
T PF04063_consen  131 CFD  133 (192)
T ss_pred             hcc
Confidence            985

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=91.36  E-value=3.1  Score=36.48  Aligned_cols=146  Identities=16%  Similarity=0.140  Sum_probs=84.5

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH
Q 010080          125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV  204 (518)
Q Consensus       125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~  204 (518)
                      .+++.|+++|+.+.+....+|++++|+.|..-++-.-+.+.+..+.-.   ...++...........+. ...++++   
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-~~~~ee~---   82 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTDISLPMMGI-SPSSEEY---   82 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchhhHHhhccC-CCchHHH---
Confidence            357888899987776788899999999998877755544433222100   001122222322222222 1112233   


Q ss_pred             HHhcCChhHHHhhhCCCC-hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080          205 LLSQGALPPLARMMLPNK-GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS  281 (518)
Q Consensus       205 ~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~  281 (518)
                       ....++..|++.++.+. ..-...++-++.++....+.+ +...  -..++|.+++.++..++..+....+-|+.|.
T Consensus        83 -y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~-cv~~--L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   83 -YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLK-CVPY--LPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             -HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcC-chhH--HHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence             23335778888887553 222334555555555332222 3334  3588999999999777788888777777665

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=91.11  E-value=2.8  Score=41.06  Aligned_cols=170  Identities=18%  Similarity=0.112  Sum_probs=114.4

Q ss_pred             ChhHHH-hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC-Cchh
Q 010080          210 ALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVA  287 (518)
Q Consensus       210 ~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~  287 (518)
                      .+..|+ ..+++++..+++.++.||+-.|--+.     +.  ....++.+.+.+..++++++..++.++..+..- ....
T Consensus        27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~--a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----EL--AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            343443 56678889999999999998886531     12  246788888888878899999999999887752 2222


Q ss_pred             hhHHH-------hcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc----C
Q 010080          288 TSLLV-------KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS----E  356 (518)
Q Consensus       288 ~~~~~-------~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~----~  356 (518)
                      .+...       ...+++.+...|. +.+++++..++..++.+.-...-..          ...++..|+-+.-+    +
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~a~EGl~KLlL~~~i~~----------~~~vL~~Lll~yF~p~t~~  168 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLD-SENPELQAIAVEGLCKLLLSGRISD----------PPKVLSRLLLLYFNPSTED  168 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCc----------HHHHHHHHHHHHcCcccCC
Confidence            22221       2356677777774 6688888999999998875542111          03466665555433    2


Q ss_pred             hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC
Q 010080          357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS  398 (518)
Q Consensus       357 ~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~  398 (518)
                      +..+|.--.+.+-..+..++++ |..+...++|.+-.+....
T Consensus       169 ~~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  169 NQRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             cHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            4578888888888888877655 4555556788887777553

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.98  E-value=21  Score=36.75  Aligned_cols=96  Identities=15%  Similarity=0.162  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHhhhCCChhhHHHHHhcC--ChhHHHh-hhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchH
Q 010080          179 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL  255 (518)
Q Consensus       179 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l  255 (518)
                      ++..++.-|+.+|+|.+...|.   .+..++  .+..++. +....+.++.-.++.+|..+......   ++.  ....+
T Consensus       270 p~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l--~~~~l  341 (533)
T KOG2032|consen  270 PSAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDL--ESYLL  341 (533)
T ss_pred             chhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cch--hhhch
Confidence            5778999999999999986332   222221  3444454 44445788998998888877643211   111  22333


Q ss_pred             H---HHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          256 D---AILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       256 ~---~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      +   .+-.+..+++++++..+...+..|+.
T Consensus       342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~  371 (533)
T KOG2032|consen  342 NIALRLRTLFDSEDDKMRAAAFVLFGALAK  371 (533)
T ss_pred             hHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence            3   34456678899999988887777664

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=90.93  E-value=0.51  Score=51.45  Aligned_cols=178  Identities=15%  Similarity=0.084  Sum_probs=95.4

Q ss_pred             HHHHHcCCHH---HHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcC---CCCHHHHHHHHHHHH
Q 010080          119 ETALKAGAIP---VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGE---KSSSPVAEQCAWALG  192 (518)
Q Consensus       119 ~~~i~~g~ip---~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~---~~~~~v~~~a~~~L~  192 (518)
                      +.+..+|--|   .+.+++....-.  ..+|++.|..+......-+..++.   .+..++.+   ..++.++..|+-+++
T Consensus       386 Dal~~aGT~~av~~i~~~I~~~~~~--~~ea~~~l~~l~~~~~~Pt~e~l~---~l~~L~~~~~~~~~~~l~~ta~L~~~  460 (618)
T PF01347_consen  386 DALPQAGTNPAVKFIKDLIKSKKLT--DDEAAQLLASLPFHVRRPTEELLK---ELFELAKSPKVKNSPYLRETALLSLG  460 (618)
T ss_dssp             HHHHHH-SHHHHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HHHHH---HHHHHHT-HHHHT-HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhhcCCCCHHHHH---HHHHHHhCccccCChhHHHHHHHHHH
Confidence            4444555433   444555543321  245777777766443333334333   33333332   245778899998888


Q ss_pred             hhhCCChhh---------HHHHHhcCChhHHHhhhC----CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHH
Q 010080          193 NVAGEGEEF---------RNVLLSQGALPPLARMML----PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL  259 (518)
Q Consensus       193 nla~d~~~~---------r~~~~~~g~i~~L~~ll~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~  259 (518)
                      .+.......         ....+....++.|...+.    ..+..-...++.+|.|+-.             ...++.|.
T Consensus       461 ~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------------~~~i~~l~  527 (618)
T PF01347_consen  461 SLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------------PESIPVLL  527 (618)
T ss_dssp             HHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------GGGHHHHH
T ss_pred             HHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------------chhhHHHH
Confidence            886421111         112223345666666655    3356777888999999941             25677788


Q ss_pred             HHhccC---ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhhhh
Q 010080          260 RHLKRA---DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGN  322 (518)
Q Consensus       260 ~lL~~~---d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L~n  322 (518)
                      .++...   +..++..|+|+|..++...++..        .+.+..++.+ ..+.+++..|+.+|-.
T Consensus       528 ~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  528 PYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR  586 (618)
T ss_dssp             TTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred             hHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence            887765   56899999999998876444222        3444555532 3456677777655443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=90.52  E-value=1.7  Score=46.83  Aligned_cols=132  Identities=11%  Similarity=0.071  Sum_probs=75.7

Q ss_pred             hHHHHHhhcC---CCCHHHHHHHHHHHHhhhC----CChhhHHHHHhcCChhHHHhhhCC----CChhHHHHHHHHHHHh
Q 010080          168 LPLLIAHLGE---KSSSPVAEQCAWALGNVAG----EGEEFRNVLLSQGALPPLARMMLP----NKGSTVRTAAWALSNL  236 (518)
Q Consensus       168 v~~Lv~lL~~---~~~~~v~~~a~~~L~nla~----d~~~~r~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~nL  236 (518)
                      +..+..++.+   .+...++..|+-+++++..    +.+.+. ..+....++.+...|..    .+..-...++.+|.|+
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            4445555543   2456788888888887753    211111 11223356666666542    3445566777888887


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhc---cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-CCCccc
Q 010080          237 IKGPDPKPATELIKVDGLLDAILRHLK---RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQL  312 (518)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v  312 (518)
                      -..             ..++.+..++.   ..+..++..|+|+|..++...+...+        +.+..++.+ ..+.++
T Consensus       474 g~~-------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      474 GHP-------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEV  532 (574)
T ss_pred             CCh-------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHH
Confidence            521             33445555554   22457999999999998864443322        344554532 456677


Q ss_pred             hhhhhhhhh
Q 010080          313 LIPVLRSLG  321 (518)
Q Consensus       313 ~~~al~~L~  321 (518)
                      +..|+.+|-
T Consensus       533 RiaA~~~lm  541 (574)
T smart00638      533 RMAAVLVLM  541 (574)
T ss_pred             HHHHHHHHH
Confidence            776665544

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=90.39  E-value=1.3  Score=46.82  Aligned_cols=145  Identities=19%  Similarity=0.141  Sum_probs=101.9

Q ss_pred             cCCHHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080          124 AGAIPVLVQCLAF---GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  200 (518)
Q Consensus       124 ~g~ip~Lv~~L~~---~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~  200 (518)
                      +..-|...+...+   -+++.+|..|.-+|..+-+-+.+   .+..-+|.|+..+..+++|.++..|+-.||.++.-...
T Consensus       891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~---fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFE---FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            4445555555543   24577878787777766543322   23356899999999889999999999999987652222


Q ss_pred             hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080          201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  280 (518)
Q Consensus       201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  280 (518)
                      ..+.     .-..|.+-|-..+..++++|..++.+|.-..       .+.+.|-++.++.+|.++|.++..-|-..+..+
T Consensus       968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilag-------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098         968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred             hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-------ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence            2221     1234555556678899999999999987442       223579999999999999999888777777777


Q ss_pred             hcC
Q 010080          281 SAL  283 (518)
Q Consensus       281 ~~~  283 (518)
                      +..
T Consensus      1036 a~K 1038 (1128)
T COG5098        1036 AKK 1038 (1128)
T ss_pred             Hhc
Confidence            753

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=90.23  E-value=1.9  Score=45.69  Aligned_cols=142  Identities=15%  Similarity=0.152  Sum_probs=105.4

Q ss_pred             hHHHHHHHhcc----CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCc
Q 010080          254 LLDAILRHLKR----ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS  329 (518)
Q Consensus       254 ~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~  329 (518)
                      +-|....+..+    .|++++..|..+|..+-+-+.+.+.     .-+|.++..+.++++|.++..|.-.+|-++-.-+.
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            33444444443    6788999998888877664444433     34788898887899999999998888877654332


Q ss_pred             ccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHH
Q 010080          330 TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV  409 (518)
Q Consensus       330 ~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~a  409 (518)
                      ..+           ..-.+|..-|...+..||+.+..++.++.-.+.     +--.|-++.+...|.+.|..+...|-..
T Consensus       968 ~~d-----------e~t~yLyrrL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~f 1031 (1128)
T COG5098         968 TAD-----------EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHF 1031 (1128)
T ss_pred             hhH-----------HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHH
Confidence            222           345677888888899999999999999874331     2235778899999999999999999888


Q ss_pred             HHHhcCC
Q 010080          410 LGNLCVS  416 (518)
Q Consensus       410 L~nl~~~  416 (518)
                      +..++..
T Consensus      1032 ft~~a~K 1038 (1128)
T COG5098        1032 FTQIAKK 1038 (1128)
T ss_pred             HHHHHhc
Confidence            8888764

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=89.72  E-value=5.2  Score=46.35  Aligned_cols=129  Identities=17%  Similarity=0.264  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHH
Q 010080          270 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL  349 (518)
Q Consensus       270 ~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L  349 (518)
                      ..+++|+..+++...+ ..+.+  .+.+..++..| ..+...+++.|++||+.|+.-++....         ...+...+
T Consensus       794 ~~~a~li~~~la~~r~-f~~sf--D~yLk~Il~~l-~e~~ialRtkAlKclS~ive~Dp~vL~---------~~dvq~~V  860 (1692)
T KOG1020|consen  794 DDDAKLIVFYLAHARS-FSQSF--DPYLKLILSVL-GENAIALRTKALKCLSMIVEADPSVLS---------RPDVQEAV  860 (1692)
T ss_pred             chhHHHHHHHHHhhhH-HHHhh--HHHHHHHHHHh-cCchHHHHHHHHHHHHHHHhcChHhhc---------CHHHHHHH
Confidence            5678888888886433 21111  25677778777 478889999999999999987753211         12344555


Q ss_pred             HHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       350 ~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      ..-+......||..|.-.+|-.....++.+...     ...+.+-..+....|||.|...++.+|..
T Consensus       861 h~R~~DssasVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e  922 (1692)
T KOG1020|consen  861 HGRLNDSSASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEE  922 (1692)
T ss_pred             HHhhccchhHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence            566667778999999999998877666654433     44566667777889999999999999975

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.45  E-value=17  Score=37.34  Aligned_cols=136  Identities=18%  Similarity=0.149  Sum_probs=82.3

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC--hHHHHHh
Q 010080           89 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETAL--KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK--QEETKAL  164 (518)
Q Consensus        89 ~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i--~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~--~~~~~~v  164 (518)
                      +...+++...+-.|++.|-+..+..+    +.+.  ..-.+..++.-|..+.+.+++.||+.+|+-+...-  .+.....
T Consensus       265 ~ka~dp~a~~r~~a~r~L~~~as~~P----~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~  340 (533)
T KOG2032|consen  265 NKATDPSAKSRGMACRGLGNTASGAP----DKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL  340 (533)
T ss_pred             HhccCchhHHHHHHHHHHHHHhccCc----HHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence            34455666677788899999877732    2222  24456666666766666788899999999887321  1222222


Q ss_pred             cCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC-ChhhHHHHH--hcCChhHHHhhhCCCChhHHHHH
Q 010080          165 LPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLL--SQGALPPLARMMLPNKGSTVRTA  229 (518)
Q Consensus       165 ~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~--~~g~i~~L~~ll~~~~~~~~~~a  229 (518)
                      +++.-.+..++.+ .+++++..|...+|.++.- +...++.+.  -.+...+++-.|+.+++.+.+++
T Consensus       341 l~ialrlR~l~~s-e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC  407 (533)
T KOG2032|consen  341 LNIALRLRTLFDS-EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC  407 (533)
T ss_pred             hhHHHHHHHHHHh-cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence            3555566677776 7899999998887776521 112333333  22334455555666666555443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=89.17  E-value=3  Score=32.76  Aligned_cols=84  Identities=20%  Similarity=0.230  Sum_probs=57.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080           83 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK  162 (518)
Q Consensus        83 ~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~  162 (518)
                      .+...+..++++.+..+-.|+..||+++.....+ +  .--.+++..+...|+.++ +-+-..|+.+|..++...++.  
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~-~--~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~~--   77 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEP-V--IDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPDE--   77 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcc-h--hhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChHH--
Confidence            3455566667889999999999999988876512 1  222567888888887655 334456999999999765542  


Q ss_pred             HhcCChHHHHHhhc
Q 010080          163 ALLPALPLLIAHLG  176 (518)
Q Consensus       163 ~v~~~v~~Lv~lL~  176 (518)
                          .+|.|+....
T Consensus        78 ----vl~~L~~~y~   87 (92)
T PF10363_consen   78 ----VLPILLDEYA   87 (92)
T ss_pred             ----HHHHHHHHHh
Confidence                2555655443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=89.02  E-value=2.7  Score=44.81  Aligned_cols=187  Identities=10%  Similarity=0.096  Sum_probs=120.1

Q ss_pred             HhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc
Q 010080          206 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN  285 (518)
Q Consensus       206 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~  285 (518)
                      .+.+++|.|++++...+..++-..+--+-+....-    ..++ ....++|.+...+.+.++-++..++-++..|+.--.
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L----t~~~-~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL----TKQI-LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS  401 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc----CHHh-hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence            46679999999999988777765554444444332    1223 357899999999999999999999999988885211


Q ss_pred             hhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHH
Q 010080          286 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA  365 (518)
Q Consensus       286 ~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~  365 (518)
                      .+   .+....+..+..+- .+....+++..--|+|.|........+.-+         ....+..-+.++-..-|+.+.
T Consensus       402 ~~---~Ln~Ellr~~ar~q-~d~~~~irtntticlgki~~~l~~~~R~~v---------L~~aftralkdpf~paR~a~v  468 (690)
T KOG1243|consen  402 KR---NLNGELLRYLARLQ-PDEHGGIRTNTTICLGKIAPHLAASVRKRV---------LASAFTRALKDPFVPARKAGV  468 (690)
T ss_pred             hh---hhcHHHHHHHHhhC-ccccCcccccceeeecccccccchhhhccc---------cchhhhhhhcCCCCCchhhhh
Confidence            11   23333444454433 355677888888889998876443332221         223344445555556677777


Q ss_pred             HHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010080          366 WVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL  413 (518)
Q Consensus       366 ~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl  413 (518)
                      |++.-.....   .+.=+...++|.++-+.-+.+..++..|-.++...
T Consensus       469 ~~l~at~~~~---~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f  513 (690)
T KOG1243|consen  469 LALAATQEYF---DQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF  513 (690)
T ss_pred             HHHhhccccc---chhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence            7776543322   22223445788888888888877887777766554

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=88.83  E-value=26  Score=34.76  Aligned_cols=158  Identities=17%  Similarity=0.184  Sum_probs=110.0

Q ss_pred             hHHHHHHHhccChhhhHHHHHHHHHHhcc-CCHHHHHHHHhC-CC-HHHHHHHhcCC----C---------hhHHHHHHH
Q 010080          345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAA-GSVEHKQLIHSS-EA-LALLLHLLSTS----P---------FDIKKEVAY  408 (518)
Q Consensus       345 ~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~-~~~~~~~~li~~-~~-i~~Li~lL~~~----~---------~~v~~eA~~  408 (518)
                      -+..+...|+..++.+...+...+..++. .+......+.+. ++ .+.+..++...    +         +++|.....
T Consensus        57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            37778888888888888899999999988 666666666653 33 45566666321    1         288988886


Q ss_pred             HHHHhcCCCCCCCCCchhHHHHHHHHH-hcCchHHHHHhhccCCHHHHHHHHHHHH-HHHccCCCCcc--hhHHHhhchH
Q 010080          409 VLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFME-LVLRGMPNHEG--TKLVEREDGI  484 (518)
Q Consensus       409 aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L~~lL~~~d~~~~~~~l~~l~-~il~~~~~~~~--~~~ie~~ggl  484 (518)
                      .+..+...     +.|    .....++ +.+.+..++.-|..++++++..+|+++. .++... ..+.  ...+-....+
T Consensus       137 F~Lsfl~~-----~~~----~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~~~fn~~~L  206 (330)
T PF11707_consen  137 FWLSFLSS-----GDP----ELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKCKLFNEWTL  206 (330)
T ss_pred             HHHHHHcc-----CCH----HHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhhhhcCHHHH
Confidence            65555543     222    3334444 6678999999999988999999999988 465432 2111  1233444577


Q ss_pred             HHHHHHhcCCCH----HHHHHHHHHHHhhcCc
Q 010080          485 DAMERFQFHENE----DLRNMANGLVDKYFGE  512 (518)
Q Consensus       485 ~~l~~L~~~~~~----~i~~~a~~il~~~f~~  512 (518)
                      .+|..|-..+++    .+.+.|.+++..++.+
T Consensus       207 ~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  207 SQLASLYSRDGEDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             HHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence            888888888777    9999999999887754

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=88.67  E-value=23  Score=36.99  Aligned_cols=153  Identities=18%  Similarity=0.196  Sum_probs=104.6

Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC---CccchhhhhhhhhhhhcCCCcccc
Q 010080          256 DAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTIS  332 (518)
Q Consensus       256 ~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~  332 (518)
                      ..+..++.+++..-+..+.-.|..++. +......++....+..|..++.+..   +..++...++++..+....-..-.
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            456677777777777778888888886 5667788888888888888875221   234556667777766544322222


Q ss_pred             eeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHH
Q 010080          333 DVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  410 (518)
Q Consensus       333 ~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL  410 (518)
                      .+-       ..++.....+.+-.  +..+-..|...+-++.-+++...+.+.+.--+..|+..++..+..++..|.-.+
T Consensus       165 ~~~-------~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~  237 (713)
T KOG2999|consen  165 SVS-------NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL  237 (713)
T ss_pred             ecc-------cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence            221       23444455554322  346778888899999988877778888888899999999999988888866655


Q ss_pred             HHhcCC
Q 010080          411 GNLCVS  416 (518)
Q Consensus       411 ~nl~~~  416 (518)
                      ..+...
T Consensus       238 nal~~~  243 (713)
T KOG2999|consen  238 NALFRK  243 (713)
T ss_pred             HHHHhh
Confidence            555443

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=88.45  E-value=11  Score=37.51  Aligned_cols=158  Identities=17%  Similarity=0.201  Sum_probs=108.9

Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhC-CChhhHHHHHhc-C-ChhHHHhhhCCC-----C--------hhHHHHHHH
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAG-EGEEFRNVLLSQ-G-ALPPLARMMLPN-----K--------GSTVRTAAW  231 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~-d~~~~r~~~~~~-g-~i~~L~~ll~~~-----~--------~~~~~~a~~  231 (518)
                      +..+...|++ ....+...|+..|..++. ++......+... + -.+.+.+++...     .        .+++.+.+.
T Consensus        58 ~k~lyr~L~~-~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSS-SKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCc-CcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            5667777776 567888899999999998 776666666554 2 234566666421     1        288888888


Q ss_pred             HHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHH-HhhcCCc---hhhhHHHhcCchHHHHHHHccC
Q 010080          232 ALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV-YLSALSN---VATSLLVKSGVLQLLVERLATS  307 (518)
Q Consensus       232 ~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-~L~~~~~---~~~~~~~~~g~~~~Lv~lL~~~  307 (518)
                      .+..+....++....+++...+.+..+.+.|..++.+++...+-+|. ++.....   ...-.++...++..|+.+. ..
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly-~~  215 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY-SR  215 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh-cc
Confidence            88777776556666677777788999999999988899999888887 4554221   1122334556778888866 34


Q ss_pred             CCc----cchhhhhhhhhhhhcCC
Q 010080          308 NSL----QLLIPVLRSLGNLVAGD  327 (518)
Q Consensus       308 ~~~----~v~~~al~~L~nl~~~~  327 (518)
                      .++    .+...+-..|-.+++..
T Consensus       216 ~~~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  216 DGEDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             cCCcccchHHHHHHHHHHHHhcCC
Confidence            444    56666777777777654

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=88.11  E-value=8.9  Score=39.38  Aligned_cols=257  Identities=11%  Similarity=0.070  Sum_probs=139.0

Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC-ChHHHHHhhcCCCCHH
Q 010080          104 RELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSP  182 (518)
Q Consensus       104 ~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~-~v~~Lv~lL~~~~~~~  182 (518)
                      ..|.+++......+....+....+-.|+.++.++++.+ +-..-..|+++-+.....+..+.. ....|..++.......
T Consensus       112 ~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rE-R~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~  190 (409)
T PF01603_consen  112 EILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRE-RDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHN  190 (409)
T ss_dssp             HHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHH-HHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--S
T ss_pred             HHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccccc
Confidence            44445554433332233455667788899998877443 234667788877666666766663 5667777777555556


Q ss_pred             HHHHHHHHHHhhhCCCh-hhHHHHHhcCChhHHHhhhCCCC-hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHH
Q 010080          183 VAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNK-GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR  260 (518)
Q Consensus       183 v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~  260 (518)
                      -...++..+|.|..+.. ..+..... =....|+.|.+.+. .........++..++.. +|..      ...++..|++
T Consensus       191 gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-dp~l------~~~~i~~llk  262 (409)
T PF01603_consen  191 GIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-DPSL------AEPVIKGLLK  262 (409)
T ss_dssp             THHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGG------HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-Cchh------HHHHHHHHHH
Confidence            66788889998876432 22221110 11234555555553 34467777888877743 2221      1233333443


Q ss_pred             HhccCChhHHHHHHHHHHHhhcCC-chhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCC
Q 010080          261 HLKRADEELTTEVAWVVVYLSALS-NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH  339 (518)
Q Consensus       261 lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~  339 (518)
                      .==..++.=....+.-+..+...- ++....+ ...++..+...+ ++.+.+|...|+....|-.     ....+.+.  
T Consensus       263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci-~S~h~qVAErAl~~w~n~~-----~~~li~~~--  333 (409)
T PF01603_consen  263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCI-SSPHFQVAERALYFWNNEY-----FLSLISQN--  333 (409)
T ss_dssp             HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHH-TSSSHHHHHHHHGGGGSHH-----HHHHHHCT--
T ss_pred             hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHh-CCCCHHHHHHHHHHHCCHH-----HHHHHHhC--
Confidence            332344444444445555555432 2222222 234556666666 5778888888887776531     11111111  


Q ss_pred             CchhhhHHHHHHHhcc-----ChhhhHHHHHHHHHHhccCCHHHHH
Q 010080          340 GITDQVIAVLVKCLKS-----EHRVLKKEAAWVLSNIAAGSVEHKQ  380 (518)
Q Consensus       340 ~~~~~~l~~L~~lL~~-----~~~~i~~~a~~~Lsnl~~~~~~~~~  380 (518)
                        ...++|.+..-|..     =+..|+..|+-++.-+..-+++...
T Consensus       334 --~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~  377 (409)
T PF01603_consen  334 --SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFD  377 (409)
T ss_dssp             --HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHH
Confidence              23477777777643     1458999998888888776665443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=87.89  E-value=2.8  Score=44.77  Aligned_cols=134  Identities=17%  Similarity=0.231  Sum_probs=90.6

Q ss_pred             hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc
Q 010080          252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI  331 (518)
Q Consensus       252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~  331 (518)
                      ..++|.|..-+++.+..++..++..+...++.-+   -..+..-++|.+..+...+.+..++..++-|++.++..-|  .
T Consensus       388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD--~  462 (700)
T KOG2137|consen  388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD--K  462 (700)
T ss_pred             HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH--H
Confidence            4677777777778888888888888888776433   2234456778887776567788899999999999982221  1


Q ss_pred             ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC
Q 010080          332 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP  399 (518)
Q Consensus       332 ~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~  399 (518)
                      -.++        ..+..+.......++.+......+..++....... +.++.++++|.++-+...+.
T Consensus       463 ~~v~--------d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  463 AAVL--------DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHhH--------HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence            1122        24445555566778888877777777776543222 44566678888888876654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=87.44  E-value=8.6  Score=34.45  Aligned_cols=82  Identities=20%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHhCCCHHHHHHHhcC---------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH-hcCchHHH
Q 010080          374 GSVEHKQLIHSSEALALLLHLLST---------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGF  443 (518)
Q Consensus       374 ~~~~~~~~li~~~~i~~Li~lL~~---------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L  443 (518)
                      .....++.+++.|++..|+++|..         .+.....+++.||..+....           .=+..++ ..+++..|
T Consensus        95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-----------~G~~~v~~~~~~v~~i  163 (187)
T PF06371_consen   95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-----------YGLEAVLSHPDSVNLI  163 (187)
T ss_dssp             S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-----------HHHHHHHCSSSHHHHH
T ss_pred             CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-----------HHHHHHHcCcHHHHHH
Confidence            345678888888999999998832         34578889999999988742           1134445 57999999


Q ss_pred             HHhhccCCHHHHHHHHHHHHHHH
Q 010080          444 IDLVRSADIEAARLGLQFMELVL  466 (518)
Q Consensus       444 ~~lL~~~d~~~~~~~l~~l~~il  466 (518)
                      +..|.+++..+...+++.|..++
T Consensus       164 ~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  164 ALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999888764

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=86.88  E-value=5.9  Score=45.98  Aligned_cols=165  Identities=16%  Similarity=0.150  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc
Q 010080          226 VRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA  305 (518)
Q Consensus       226 ~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~  305 (518)
                      ..++.|....|+...   +...-  -.+++..++.++..+...++.-|+.||+.+...++...   ....+-..+...+ 
T Consensus       794 ~~~a~li~~~la~~r---~f~~s--fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~-  864 (1692)
T KOG1020|consen  794 DDDAKLIVFYLAHAR---SFSQS--FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRL-  864 (1692)
T ss_pred             chhHHHHHHHHHhhh---HHHHh--hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhh-
Confidence            467778777777542   11111  23677888888888888999999999999998654221   1122223333344 


Q ss_pred             cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhC
Q 010080          306 TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS  385 (518)
Q Consensus       306 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~  385 (518)
                      ...+..|+..|+-.+|..+...++...           .....+..-+......||+.++.++.-++...|..-.     
T Consensus       865 ~DssasVREAaldLvGrfvl~~~e~~~-----------qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-----  928 (1692)
T KOG1020|consen  865 NDSSASVREAALDLVGRFVLSIPELIF-----------QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-----  928 (1692)
T ss_pred             ccchhHHHHHHHHHHhhhhhccHHHHH-----------HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-----
Confidence            256778999999999988876653322           2445555555666779999999999999877654322     


Q ss_pred             CCHHHHHHHh---cCCChhHHHHHHHHHHHhcCC
Q 010080          386 EALALLLHLL---STSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       386 ~~i~~Li~lL---~~~~~~v~~eA~~aL~nl~~~  416 (518)
                       +......+|   .+.+..+++-+..++.++=..
T Consensus       929 -i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~  961 (1692)
T KOG1020|consen  929 -IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT  961 (1692)
T ss_pred             -HHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence             233444444   334444888888888887443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=86.08  E-value=4.1  Score=32.00  Aligned_cols=81  Identities=17%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             hHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHH
Q 010080          212 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL  291 (518)
Q Consensus       212 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~  291 (518)
                      ...+..+.++.+.++..+...|+.|.+.++    ........++..+...|.++|+-|-..|..+|..|++..+      
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p------   75 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP------   75 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh------
Confidence            345566677888999999999999998764    1123345788888999999999999999999999997543      


Q ss_pred             HhcCchHHHHHHH
Q 010080          292 VKSGVLQLLVERL  304 (518)
Q Consensus       292 ~~~g~~~~Lv~lL  304 (518)
                        ..+++.|++..
T Consensus        76 --~~vl~~L~~~y   86 (92)
T PF10363_consen   76 --DEVLPILLDEY   86 (92)
T ss_pred             --HHHHHHHHHHH
Confidence              23456666655

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.01  E-value=75  Score=38.46  Aligned_cols=283  Identities=15%  Similarity=0.102  Sum_probs=132.3

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhH-HHHHHHHHHHhhcCCCCCch
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGST-VRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~-~~~a~~~L~nL~~~~~~~~~  245 (518)
                      +...++..|.. +++..+..+..+++.++...+..   ..-.+....++.-+.+....+ +-.-..++..+-+....-..
T Consensus       877 ~~~l~~~sl~~-~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s  952 (2067)
T KOG1822|consen  877 ALTLIVNSLIN-PNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS  952 (2067)
T ss_pred             HHHHHhhhhcc-CChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence            44455555655 67788888888888887643221   111112233333334433333 33334444445443221111


Q ss_pred             hhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080          246 TELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~  324 (518)
                      .+.  ....+..+..+.. +.++.|+..++.+++++.+.........++ ..+..+..+|...  +........+++...
T Consensus       953 ~qh--l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~--p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen  953 GQH--LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSV--PTSHVEVHQCYNRCF 1027 (2067)
T ss_pred             chh--cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCC--Ccchhhhhhhhcccc
Confidence            222  2355666666666 445699999999999999844333322222 2233344444322  222222223333322


Q ss_pred             cCCCcccceeecc-CCCc------------hhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHH
Q 010080          325 AGDSSTISDVLVP-GHGI------------TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL  391 (518)
Q Consensus       325 ~~~~~~~~~~i~~-G~~~------------~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~L  391 (518)
                      .+++.. ..++.+ |.++            ..-.+-...-++.++++-++.++..++.++---.+.+..   -.-+++.|
T Consensus      1028 ~~~~~~-~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L 1103 (2067)
T KOG1822|consen 1028 NGDDDE-DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQL 1103 (2067)
T ss_pred             ccchhH-HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHH
Confidence            222111 011110 1000            011233334455677888899999999887543322211   11245566


Q ss_pred             HHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH---------------hcCchHHHHHhhcc-CCHHHH
Q 010080          392 LHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV---------------GRGCLSGFIDLVRS-ADIEAA  455 (518)
Q Consensus       392 i~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~---------------~~g~i~~L~~lL~~-~d~~~~  455 (518)
                      ..++.+.-.-.|+.+..++.-+....      ...+-++.+.+.               +.|.=-.+..+|+. .|.+++
T Consensus      1104 ~~~l~s~~~i~r~~~~~clrql~~Re------~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~ 1177 (2067)
T KOG1822|consen 1104 CSLLSSSYLILRRASFSCLRQLVQRE------ASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLL 1177 (2067)
T ss_pred             HHHhcchhhhhhhhHHhhhhHHhHHH------HHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHH
Confidence            66555543333333333333332210      000011111111               33444455566653 567788


Q ss_pred             HHHHHHHHHHHcc
Q 010080          456 RLGLQFMELVLRG  468 (518)
Q Consensus       456 ~~~l~~l~~il~~  468 (518)
                      +.+++.+.+++..
T Consensus      1178 ~~I~~tl~~~~~~ 1190 (2067)
T KOG1822|consen 1178 KNILETLSRMLNS 1190 (2067)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888876643

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=85.43  E-value=7.9  Score=34.14  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhC--CCHHHHHHHhcCCC-hhHHHHHHHHHHHhcCCCCCC
Q 010080          344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS--EALALLLHLLSTSP-FDIKKEVAYVLGNLCVSPTEG  420 (518)
Q Consensus       344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~--~~i~~Li~lL~~~~-~~v~~eA~~aL~nl~~~~~~~  420 (518)
                      .....+..+|+++++.-|-.++..+.-++..++  -..+.++  ..+..|+.+|+..+ ..+++.|+.++..+....   
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~---   99 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI---   99 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence            567788889999888777777777776665442  1233333  24778888887654 567888889999987642   


Q ss_pred             CCCchhHHHHHHHHHhc---CchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC
Q 010080          421 EGKPKLIQEHLVSLVGR---GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN  471 (518)
Q Consensus       421 ~~~~~~~~~~~~~l~~~---g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~  471 (518)
                      ++.|+    -.+.+..-   ++++.++.+++.  ......++++|..++...+.
T Consensus       100 ~~~p~----l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  100 RGKPT----LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             cCCCc----hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            34542    23444322   456666666654  56777899999999986654

>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function

Probab=85.40  E-value=49  Score=34.36  Aligned_cols=194  Identities=14%  Similarity=0.164  Sum_probs=102.3

Q ss_pred             hchHHHHHHHhc-cCChhHHHHHHHHHHHhhcC----------CchhhhHHHhcCchHHHHHHHccC--CCccchhh-h-
Q 010080          252 DGLLDAILRHLK-RADEELTTEVAWVVVYLSAL----------SNVATSLLVKSGVLQLLVERLATS--NSLQLLIP-V-  316 (518)
Q Consensus       252 ~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~----------~~~~~~~~~~~g~~~~Lv~lL~~~--~~~~v~~~-a-  316 (518)
                      ..+|..+.+++. ++.-.++.+++|.|++|--.          -+....++-+.-++...++++...  ..++..-+ . 
T Consensus        96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv  175 (589)
T PF11229_consen   96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV  175 (589)
T ss_pred             HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence            456666777776 55668899999999876421          123344555666777777777522  12332222 1 


Q ss_pred             hhhhhhhhc-CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHH-HHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080          317 LRSLGNLVA-GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW-VLSNIAAGSVEHKQLIHSSEALALLLHL  394 (518)
Q Consensus       317 l~~L~nl~~-~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~-~Lsnl~~~~~~~~~~li~~~~i~~Li~l  394 (518)
                      --++.-+++ |...+.-. ++     +..++.+|+++ +. ...++..+.- ++.+.  .+......++..=+.|+++.-
T Consensus       176 kvvl~~ia~vgeS~qyPP-VN-----WaalLsPLMRl-nf-GeEvq~lCLeiAvtQa--qSSqsAa~fLg~WlsPpli~s  245 (589)
T PF11229_consen  176 KVVLKPIATVGESYQYPP-VN-----WAALLSPLMRL-NF-GEEVQQLCLEIAVTQA--QSSQSAAMFLGSWLSPPLIHS  245 (589)
T ss_pred             HHHHHHhhhcCCCCCCCC-cc-----HHHHhhHHHhc-cc-cHHHHHHHHHHHHHhc--cccccHHHHHHhhcCcchhhh
Confidence            233444443 22233222 23     34567777776 22 3566666553 33333  233445667777778888887


Q ss_pred             hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHc
Q 010080          395 LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR  467 (518)
Q Consensus       395 L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~  467 (518)
                      |+...   ++.-...+.-...+-      |   .++++.+++.=.+..|-..-.-.+++++..+|.+|..-++
T Consensus       246 Ls~~t---k~~L~~Sl~~wmkhV------s---edqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMK  306 (589)
T PF11229_consen  246 LSVNT---KKYLFESLSLWMKHV------S---EDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMK  306 (589)
T ss_pred             hhHHH---HHHHHHHHHHHHhhC------C---HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhc
Confidence            76543   322222222222211      1   3566666554444444433334556777777777766554

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=84.88  E-value=47  Score=33.62  Aligned_cols=267  Identities=13%  Similarity=0.106  Sum_probs=135.5

Q ss_pred             hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc----c-------CChhHHHHHHHHHHHhhcCCchhhhHH
Q 010080          223 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK----R-------ADEELTTEVAWVVVYLSALSNVATSLL  291 (518)
Q Consensus       223 ~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~----~-------~d~~v~~~a~~~L~~L~~~~~~~~~~~  291 (518)
                      .+-+..|--+|.+.-+..+..+....+  ..-++.+++.+.    .       .|..+...|+.+|+++... ++....+
T Consensus         7 ~~~r~daY~~l~~~l~~~~~~~~~~~l--~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~~~l   83 (372)
T PF12231_consen    7 RSSRLDAYMTLNNALKAYDNLPDRQAL--QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIVSTL   83 (372)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHHhhC
Confidence            344555566666666554444444332  355566665553    2       3568899999999998863 2222222


Q ss_pred             Hhc---CchHHHHHHHccCC-CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHH
Q 010080          292 VKS---GVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAW  366 (518)
Q Consensus       292 ~~~---g~~~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~  366 (518)
                      -+.   -++...+..|...+ +..+..+.+++|+.--.+....+....       ..++..+..+-+ -+...+..|++.
T Consensus        84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~-------~~l~~~l~~i~~~~~s~si~~erL~  156 (372)
T PF12231_consen   84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRV-------ERLLAALHNIKNRFPSKSIISERLN  156 (372)
T ss_pred             ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhH-------HHHHHHHHHhhccCCchhHHHHHHH
Confidence            111   13344555553222 334567778888754333321111111       123333333333 355688999999


Q ss_pred             HHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc-------
Q 010080          367 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC-------  439 (518)
Q Consensus       367 ~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~-------  439 (518)
                      ++-++....++....-++ --+|.++..+-+...+++..|...+..+.....   .+ ..+...+....+...       
T Consensus       157 i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~---~~-~~~s~~~~~~~~~~~~~~~~~~  231 (372)
T PF12231_consen  157 IYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLG---PN-KELSKSVLEDLQRSLENGKLIQ  231 (372)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhC---hh-HHHHHHHHHHhccccccccHHH
Confidence            999998766554322211 257788888877777788776666555533210   00 001112222223222       


Q ss_pred             --hHHHHHhhcc-CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080          440 --LSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD  507 (518)
Q Consensus       440 --i~~L~~lL~~-~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~  507 (518)
                        .+.|..|+.. ++....-.+-.++-.++... .-.....+.+  -+.-.+...+++++.++..|..--.
T Consensus       232 ~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~-~~~~w~~~n~--wL~v~e~cFn~~d~~~k~~A~~aW~  299 (372)
T PF12231_consen  232 LYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS-RLDSWEHLNE--WLKVPEKCFNSSDPQVKIQAFKAWR  299 (372)
T ss_pred             HHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc-hhhccHhHhH--HHHHHHHHhcCCCHHHHHHHHHHHH
Confidence              2235556666 33334444444555555221 0001111111  2333455677888888887754443

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=84.72  E-value=20  Score=38.62  Aligned_cols=204  Identities=17%  Similarity=0.150  Sum_probs=117.5

Q ss_pred             ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHH
Q 010080          222 KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLV  301 (518)
Q Consensus       222 ~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv  301 (518)
                      ++.-+..-...|+++.-..    .. -+....++|.|+..+.+  ..++-..+=.+.+++.+.+   +.-....+++.|.
T Consensus       286 dn~qKs~Flk~Ls~~ip~f----p~-rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~  355 (700)
T KOG2137|consen  286 DNSQKSSFLKGLSKLIPTF----PA-RVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALK  355 (700)
T ss_pred             CcHHHHHHHHHHHHhhccC----CH-HHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHH
Confidence            3333444555566665332    11 22346788888877743  2333333333444444322   1112344567777


Q ss_pred             HHHccCCCccchhhhhhhhhhh---hcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHH
Q 010080          302 ERLATSNSLQLLIPVLRSLGNL---VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH  378 (518)
Q Consensus       302 ~lL~~~~~~~v~~~al~~L~nl---~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~  378 (518)
                      ..+......++   .+.++-|+   ..-.+  ...+       ...++|.|..-+.+.+..++..+...+..++..-+  
T Consensus       356 pi~~~~~~~~~---~l~i~e~mdlL~~Kt~--~e~~-------~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--  421 (700)
T KOG2137|consen  356 PIYSASDPKQA---LLFILENMDLLKEKTP--PEEV-------KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--  421 (700)
T ss_pred             HHhccCCcccc---hhhHHhhHHHHHhhCC--hHHH-------HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--
Confidence            76642222222   22233333   11111  1112       34689999999999999999999999988865322  


Q ss_pred             HHHHHhCCCHHHHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc---hHHHHHhhccCCHHH
Q 010080          379 KQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC---LSGFIDLVRSADIEA  454 (518)
Q Consensus       379 ~~~li~~~~i~~Li~lL-~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~---i~~L~~lL~~~d~~~  454 (518)
                       -..+..-++|.|-++. ++.+..++..++.|+.-+..                 .+-...+   +.++..-....|+.+
T Consensus       422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-----------------~lD~~~v~d~~lpi~~~~~~~dp~i  483 (700)
T KOG2137|consen  422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-----------------RLDKAAVLDELLPILKCIKTRDPAI  483 (700)
T ss_pred             -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-----------------HHHHHHhHHHHHHHHHHhcCCCcHH
Confidence             1234455888888885 66788899999999988753                 2222223   444445555688999


Q ss_pred             HHHHHHHHHHHHc
Q 010080          455 ARLGLQFMELVLR  467 (518)
Q Consensus       455 ~~~~l~~l~~il~  467 (518)
                      +...+.+.+++.-
T Consensus       484 v~~~~~i~~~l~~  496 (700)
T KOG2137|consen  484 VMGFLRIYEALAL  496 (700)
T ss_pred             HHHHHHHHHHHHh
Confidence            9888888877764

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.71  E-value=14  Score=39.64  Aligned_cols=192  Identities=9%  Similarity=0.038  Sum_probs=112.6

Q ss_pred             HHHHHHccCCCccchhhhhhhhhhhhcCCCcc-----cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080          299 LLVERLATSNSLQLLIPVLRSLGNLVAGDSST-----ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  373 (518)
Q Consensus       299 ~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~-----~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~  373 (518)
                      .|..-| +..+..|+..|+..+-++-.--+..     .+.+++       .-...|..+|.++-+.||..|..-++-++.
T Consensus       178 ~l~R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-------kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s  249 (1005)
T KOG1949|consen  178 ILWRGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-------KQFEELYSLLEDPYPMVRSTAILGVCKITS  249 (1005)
T ss_pred             HHHHhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-------HHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            334444 4677888988888888776432222     133332       456788999999999999999988887776


Q ss_pred             CCHHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCH
Q 010080          374 GSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADI  452 (518)
Q Consensus       374 ~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~  452 (518)
                      -.-+.+-.-+--.++..++.-+. +...+||......|..+..++.            +..+.+. ++|.+--.|.++..
T Consensus       250 ~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~------------sh~~le~-~Lpal~~~l~D~se  316 (1005)
T KOG1949|consen  250 KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL------------SHPLLEQ-LLPALRYSLHDNSE  316 (1005)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc------------chhHHHH-HHHhcchhhhccch
Confidence            44333322111124444444443 3445788888888888876531            1122221 24556566666777


Q ss_pred             HHHHHHHHHHHHHHccCCCCcchhHHHhhchHH-HHHHHhcCCCHHHHHHHHHHHHhhcCccCCC
Q 010080          453 EAARLGLQFMELVLRGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNMANGLVDKYFGEDYGL  516 (518)
Q Consensus       453 ~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~-~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~  516 (518)
                      .+.....+.|..|-    +... ..+-..-.+| .|..|-.+.-+--+..+.-|+..||+....+
T Consensus       317 ~VRvA~vd~ll~ik----~vra-~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~e  376 (1005)
T KOG1949|consen  317 KVRVAFVDMLLKIK----AVRA-AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPE  376 (1005)
T ss_pred             hHHHHHHHHHHHHH----hhhh-hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcH
Confidence            77666666665552    1111 1222222334 4455555555555677888899999877644

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=83.53  E-value=43  Score=35.39  Aligned_cols=109  Identities=11%  Similarity=0.100  Sum_probs=71.7

Q ss_pred             CChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHH
Q 010080          156 GKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN  235 (518)
Q Consensus       156 ~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n  235 (518)
                      ..++....+-|.+-.++..+.+ ++..|+..++.+|+-+.- +-.-.+..+-+|.+..|..-+-...+.+++.|+.+|+.
T Consensus        81 ~dpeg~~~V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~  158 (885)
T COG5218          81 DDPEGEELVAGTFYHLLRGTES-KDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCY  158 (885)
T ss_pred             CChhhhHHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3444444444667777777776 788999999999988875 22223466677888888876667778999999999999


Q ss_pred             hhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHH
Q 010080          236 LIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEV  273 (518)
Q Consensus       236 L~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a  273 (518)
                      +-.......       ......|+.+++ +++.+|+..+
T Consensus       159 ~Qe~~~nee-------n~~~n~l~~~vqnDPS~EVRr~a  190 (885)
T COG5218         159 YQEMELNEE-------NRIVNLLKDIVQNDPSDEVRRLA  190 (885)
T ss_pred             HHhccCChH-------HHHHHHHHHHHhcCcHHHHHHHH
Confidence            875533221       122334455554 3445666554

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=83.02  E-value=42  Score=35.15  Aligned_cols=144  Identities=13%  Similarity=0.126  Sum_probs=97.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCC---hHHHHHHHHHHHHHhcCChHHHH---Hh
Q 010080           91 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSP---DEQLLEAAWCLTNIAAGKQEETK---AL  164 (518)
Q Consensus        91 ~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~---~~~~~eA~~~L~nia~~~~~~~~---~v  164 (518)
                      +.+++...++.|+..+.. +|... ..+.+++....+..|..++..+..   ..+   -+.+|+.++..-.-...   .+
T Consensus        92 l~~~~~~~~~~a~k~l~s-ls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~---L~~~L~af~elmehgvvsW~~~  166 (713)
T KOG2999|consen   92 LTEGNNISKMEALKELDS-LSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSEL---LSTSLRAFSELMEHGVVSWESV  166 (713)
T ss_pred             HhCCCcHHHHHHHHHHhh-ccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHH---HHHHHHHHHHHHhhceeeeeec
Confidence            348888899999999988 56653 456789998999999999986542   122   23344444422111110   11


Q ss_pred             c-CChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080          165 L-PALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       165 ~-~~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~  239 (518)
                      - ..|-....+... -.+..+-..|+..|-++...++..++.+.+.--+..|++.++..+..+...|.-.+-.+...
T Consensus       167 ~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  167 SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            1 233334444321 13456778888999998887888999999999999999999988888888877666666654

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.83  E-value=28  Score=37.50  Aligned_cols=104  Identities=12%  Similarity=0.020  Sum_probs=73.0

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      +.+..++....+ ++..|+..++..|..+.... .-++..+-.+....|..=+....+.++..|+.+|+.+-..+...  
T Consensus        85 ~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   85 GTFYHLLRGTES-KDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             HHHHHHHhcccC-cchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence            455566666655 67899999999999998744 33444555566777776666777899999999999998443221  


Q ss_pred             hhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHH
Q 010080          246 TELIKVDGLLDAILRHLK-RADEELTTEVAWVVV  278 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~  278 (518)
                           ...+...+..+++ +++++|+..++..+.
T Consensus       161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                 2356667777776 566788887766543

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=82.63  E-value=3  Score=34.58  Aligned_cols=75  Identities=13%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhc--------CCCHHHHHHHHHHHHhhc
Q 010080          439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF--------HENEDLRNMANGLVDKYF  510 (518)
Q Consensus       439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~--------~~~~~i~~~a~~il~~~f  510 (518)
                      ++..|..=|+.+++.+..++|.+|..++..++......+......+..+.+...        ..+..|+..|.++++-.|
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if  118 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF  118 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence            456677778888888989999999999987753211122223333334444433        236689999999999999


Q ss_pred             Ccc
Q 010080          511 GED  513 (518)
Q Consensus       511 ~~~  513 (518)
                      +++
T Consensus       119 ~~~  121 (122)
T cd03572         119 SYS  121 (122)
T ss_pred             ccC
Confidence            875

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.63  E-value=1.1e+02  Score=36.12  Aligned_cols=148  Identities=11%  Similarity=0.110  Sum_probs=93.4

Q ss_pred             cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080          294 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  373 (518)
Q Consensus       294 ~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~  373 (518)
                      .|++|.|-.-|. +.+..++..|...+|.+....+.+..   +.    .......++.-+...+..+|.++.-...++..
T Consensus       258 ~~vip~l~~eL~-se~~~~Rl~a~~lvg~~~~~~~~~l~---~~----~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~  329 (1266)
T KOG1525|consen  258 LAVIPQLEFELL-SEQEEVRLKAVKLVGRMFSDKDSQLS---ET----YDDLWSAFLGRFNDISVEVRMECVESIKQCLL  329 (1266)
T ss_pred             HHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhcchhhhc---cc----chHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence            478888888774 78889999999999999977765443   11    12455566666677788999999999999887


Q ss_pred             CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHH
Q 010080          374 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE  453 (518)
Q Consensus       374 ~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~  453 (518)
                      .++.......   ..-.+-.  .+.|++++.....++.-+..            .+..-.++.. .+..+-+.+.++-..
T Consensus       330 ~~~~~~~~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~v------------~~~~l~~~~~-ll~~~~eR~rDKk~~  391 (1266)
T KOG1525|consen  330 NNPSIAKAST---ILLALRE--RDLDEDVRVRTQVVIVACDV------------MKFKLVYIPL-LLKLVAERLRDKKIK  391 (1266)
T ss_pred             cCchhhhHHH---HHHHHHh--hcCChhhhheeeEEEEEeeh------------hHhhhhhhHH-HHHHHHHHHhhhhHH
Confidence            7655443321   1222222  33444444333222221111            0111222233 566666777788889


Q ss_pred             HHHHHHHHHHHHHc
Q 010080          454 AARLGLQFMELVLR  467 (518)
Q Consensus       454 ~~~~~l~~l~~il~  467 (518)
                      |...|+..|..+.+
T Consensus       392 VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  392 VRKQAMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888876

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=82.36  E-value=13  Score=41.34  Aligned_cols=189  Identities=13%  Similarity=0.089  Sum_probs=114.4

Q ss_pred             HHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeecc
Q 010080          258 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP  337 (518)
Q Consensus       258 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~  337 (518)
                      +..-+.+.+-.-+..++-.+.-+..... ..-.-...|.+-.+......+.+..+...++.+|.-|+..-........  
T Consensus       258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~--  334 (815)
T KOG1820|consen  258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA--  334 (815)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH--
Confidence            3333445554455555555555554222 1111112344555555554566777778888889888876543332222  


Q ss_pred             CCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080          338 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       338 G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  417 (518)
                           .+++|.|+.-+......++..+.-++--+...++       -..+.+.++..+++.++.++.++...+.......
T Consensus       335 -----~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~  402 (815)
T KOG1820|consen  335 -----KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL  402 (815)
T ss_pred             -----HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence                 3577888888877777666655555444433221       1136778889999999999998666665554432


Q ss_pred             CCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080          418 TEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       418 ~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~  470 (518)
                      .+  .++       ..-.-.++++.++....+.|.++...+++++..+++...
T Consensus       403 ~~--~~~-------~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G  446 (815)
T KOG1820|consen  403 GP--KTV-------EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG  446 (815)
T ss_pred             CC--cCc-------chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence            10  111       111224578889999999999999999999998887543

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=81.34  E-value=91  Score=38.32  Aligned_cols=206  Identities=10%  Similarity=0.034  Sum_probs=110.3

Q ss_pred             CCHHHHHHHHHHHHhhhCCC---hhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhch
Q 010080          179 SSSPVAEQCAWALGNVAGEG---EEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGL  254 (518)
Q Consensus       179 ~~~~v~~~a~~~L~nla~d~---~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~  254 (518)
                      ++..+...|+..|..++...   ++....-.+...+.|+..++.+ .+.++++.++.|+.+|......     -+  ..+
T Consensus      1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~-----nI--kSG 1221 (1780)
T PLN03076       1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN-----NV--KSG 1221 (1780)
T ss_pred             cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-----hh--hcC
Confidence            46677777777777776422   2323333455678888887774 4789999999999998765321     22  235


Q ss_pred             HHHHHHHhc----cCChhHHHHHHHHHHHhhcCCchhhhHHHh--cCchHHHHHHHc----cCCCccchhhhhhhhhhhh
Q 010080          255 LDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVK--SGVLQLLVERLA----TSNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       255 l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~~~~Lv~lL~----~~~~~~v~~~al~~L~nl~  324 (518)
                      -+.+..++.    ...+.+...+.-++..+...   ....+..  .+.+..+|..|.    ...+.++-..|+..|.+++
T Consensus      1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d---~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076       1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE---YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred             cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh---hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence            555555554    44567777777777766642   2222211  233333333332    2223455556666665441


Q ss_pred             ----cCCC-----------------------cccceeeccCCCchhhhHHHHHH---HhccChhhhHHHHHHHHHHhccC
Q 010080          325 ----AGDS-----------------------STISDVLVPGHGITDQVIAVLVK---CLKSEHRVLKKEAAWVLSNIAAG  374 (518)
Q Consensus       325 ----~~~~-----------------------~~~~~~i~~G~~~~~~~l~~L~~---lL~~~~~~i~~~a~~~Lsnl~~~  374 (518)
                          .+.-                       .....+.+.. ......+|.|..   +...+++.||..|+-+|-.+...
T Consensus      1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076       1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKD-DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred             HHHHhccccccccccccccccccccccccccccccccccch-hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence                1100                       0000000000 000123444444   45667889999999998777642


Q ss_pred             -----CHHHHHHHHhCCCHHHHHHHhc
Q 010080          375 -----SVEHKQLIHSSEALALLLHLLS  396 (518)
Q Consensus       375 -----~~~~~~~li~~~~i~~Li~lL~  396 (518)
                           +++.-..+++ +++.+++..++
T Consensus      1378 yG~~Fs~~~W~~if~-~VLFPIFd~l~ 1403 (1780)
T PLN03076       1378 HGHLFSLPLWERVFE-SVLFPIFDYVR 1403 (1780)
T ss_pred             hhccCCHHHHHHHHH-HHHHHHHHHHH
Confidence                 2233333444 46666666664

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=81.21  E-value=4.3  Score=44.40  Aligned_cols=180  Identities=16%  Similarity=0.142  Sum_probs=105.8

Q ss_pred             HHHHHHHHHhhhCCCh-------hhHHHHHhcCChhHHHhhhCC--------CChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080          184 AEQCAWALGNVAGEGE-------EFRNVLLSQGALPPLARMMLP--------NKGSTVRTAAWALSNLIKGPDPKPATEL  248 (518)
Q Consensus       184 ~~~a~~~L~nla~d~~-------~~r~~~~~~g~i~~L~~ll~~--------~~~~~~~~a~~~L~nL~~~~~~~~~~~~  248 (518)
                      .++.+|-+-.+....+       +....++..+++..++.+.+-        +..++.+.|.-+|.-+..-  |....++
T Consensus       569 ~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i--P~iq~~L  646 (1516)
T KOG1832|consen  569 VEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI--PDIQKAL  646 (1516)
T ss_pred             HHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec--chHHHHH
Confidence            4666676666654444       333456778888888888763        2345666666666555432  3332222


Q ss_pred             HHh-------hchHHHHHHHhc----cCChhHHHHHHHHHHHhhcCCchhhhHHH----hcCchHHHHHHHccCCCccch
Q 010080          249 IKV-------DGLLDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLV----KSGVLQLLVERLATSNSLQLL  313 (518)
Q Consensus       249 i~~-------~~~l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~~~----~~g~~~~Lv~lL~~~~~~~v~  313 (518)
                      +..       ..++..|+..-.    ..|++++..|+.+|-++...+++.....+    ....-+..  .|...+....+
T Consensus       647 a~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~l  724 (1516)
T KOG1832|consen  647 AHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKL  724 (1516)
T ss_pred             HHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHH
Confidence            210       011212221111    23789999999999999987765543332    11111111  12122333455


Q ss_pred             hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh-----hhHHHHHHHHHHhccCCHHHHHHHHh
Q 010080          314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-----VLKKEAAWVLSNIAAGSVEHKQLIHS  384 (518)
Q Consensus       314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~-----~i~~~a~~~Lsnl~~~~~~~~~~li~  384 (518)
                      ...++-+.+.+.+++                ++..|+++|+...|     .+|+-||.+|--|+... ...|.+-.
T Consensus       725 e~~l~~mw~~Vr~nd----------------GIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~-tVrQIltK  783 (1516)
T KOG1832|consen  725 EQVLRQMWEAVRGND----------------GIKILLKLLQYKNPPTTADCIRALACRVLLGLARDD-TVRQILTK  783 (1516)
T ss_pred             HHHHHHHHHHHhcCc----------------cHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc-HHHHHHHh
Confidence            677777777776663                78889999987654     79999999999998764 55665543

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=80.95  E-value=19  Score=32.39  Aligned_cols=72  Identities=8%  Similarity=0.042  Sum_probs=56.6

Q ss_pred             ChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080          210 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT  288 (518)
Q Consensus       210 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~  288 (518)
                      .++.++.+..+++..++..|+-.+..+.+..--       .-..++|+|+.+..++++.++..|...+..+....+...
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-------nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v   80 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV-------NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV   80 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-------ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence            466777777788999999999999887764211       123689999999999999999999999999987444333

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=80.89  E-value=40  Score=30.19  Aligned_cols=72  Identities=13%  Similarity=0.081  Sum_probs=51.5

Q ss_pred             hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      -.+|.++.=|...+.-.+--|...+..+... ..+.+-.++-. ++++|-..|.+.+++|...++.+|..++..
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~  110 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVTS  110 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            4778777777665554555555555555443 44555555543 888999999999999999999999999653

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	518
4b8j_A	528	Rimp_alpha1a Length = 528		3e-48
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		5e-48
2yns_A	490	Rimp_alpha_b54nls Length = 490		2e-45
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		2e-45
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		3e-45
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		3e-45
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		4e-45
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-44
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		6e-44
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		2e-41
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		2e-41
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		3e-41
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		3e-41
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		3e-41
1ial_A	453	Importin Alpha, Mouse Length = 453		3e-41
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		4e-41
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		4e-41
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		6e-41
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		6e-41
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		6e-41
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		6e-41
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		6e-41
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		7e-41
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		8e-41
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		3e-40
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		6e-37
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		6e-37
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		4e-15
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-13
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		5e-08
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-12
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-08
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-04
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		2e-12
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-08
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		7e-06
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		5e-12
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		7e-09
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		5e-10

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 154/515 (29%), Positives = 244/515 (47%), Gaps = 47/515 (9%)
Query: 10  KRDPIKSSVGNVAAQRRRQ-NAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDE 68
           +R+  K +V     +RRR+ N V + K RRE  +  KR  R G  A   V + +   VD+
Sbjct: 14  RRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKR--REGLQAQAPVPASAATGVDK 71
Query: 69  EQSILEMQTSSAVEELKSAVA--YHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGA 126
           +           +E L + +   Y     +Q  + A             PPIE  +++G 
Sbjct: 72  K-----------LESLPAMIGGVYSDDNNLQ--LEATTQFRKLLSIERSPPIEEVIQSGV 118
Query: 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAE 185
           +P  VQ L      +   EAAW LTNIA+G  E TK         I   L   SS  V E
Sbjct: 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVRE 178
Query: 186 QCAWALGNVAGEGEEFRNVLLSQGA-LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP 244
           Q  WALGNVAG+  + R+++L+ GA LP LA++    K S +R A W LSN  +G  P+P
Sbjct: 179 QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG-KPQP 237
Query: 245 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL 304
           + E  +    L A+ R +   DEE+ T+  W + YLS  +N     ++++GV   LVE L
Sbjct: 238 SFE--QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-L 294
Query: 305 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEA 364
               S  +LIP LR++GN+V GD +    ++   H     ++++L + LK   + +KKEA
Sbjct: 295 LLHPSPSVLIPALRTVGNIVTGDDAQTQCII--DHQALPCLLSLLTQNLK---KSIKKEA 349
Query: 365 AWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKP 424
            W +SNI AG+ +  Q                   FDIKKE A+ + N     T G    
Sbjct: 350 CWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN----ATSGGS-- 403
Query: 425 KLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG---------T 475
               + +  LV  GC+    DL+   DI    + L+ +E +L+     +          +
Sbjct: 404 ---HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFS 460
Query: 476 KLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
           ++++  +G++ +E  Q H+N ++   A  +++ Y+
Sbjct: 461 QMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  188 bits (478), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 232/502 (46%), Gaps = 35/502 (6%)
Query: 24  QRRRQNAVTVGKERR-ESLVRAKRLCRVGTSADGEVSSDSDMMVDEE-QSILEMQTSSAV 81
           +RR    V + K +R E+L + +        AD +   +S +  D++  S L+ +     
Sbjct: 34  RRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMT 93
Query: 82  EELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 141
           ++L S         MQ++++A             PPI+  ++AG +P LV+ +    P+ 
Sbjct: 94  QQLNS-------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146
Query: 142 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 200
             LEAAW LTNIA+G   +TK         +   L    S  V EQ  WALGNVAG+  +
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206
Query: 201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 260
           +R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+P   +  V   L  + +
Sbjct: 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAK 264
Query: 261 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 320
            +   D E   +  W + YLS     A   ++   + + LVE L+  ++L +  P LR++
Sbjct: 265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAV 323
Query: 321 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 380
           GN+V G+      V+  G      V+  L   L S    +KKEA W +SNI AG+ E  Q
Sbjct: 324 GNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 381 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 440
                              +  KKE  + + N   + + G  +P +I+     LV +GC+
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCI 430
Query: 441 SGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQ 491
               DL+  AD     + L  +E +L         RG+  +E    +E+  G++ +   Q
Sbjct: 431 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 490
Query: 492 FHENEDLRNMANGLVDKYFGED 513
            +EN+ +   A  +++ YFGE+
Sbjct: 491 QNENDKIYEKAYKIIETYFGEE 512

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/406 (31%), Positives = 203/406 (50%), Gaps = 29/406 (7%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AH 174
           PPIE  +++G +P  VQ L      +   EAAW LTNIA+G  E TK         I   
Sbjct: 70  PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 129
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGA-LPPLARMMLPNKGSTVRTAAWAL 233
           L   SS  V EQ  WALGNVAG+  + R+++L+ GA LP LA++    K S +R A W L
Sbjct: 130 LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 189
Query: 234 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK 293
           SN  +G  P+P+ E  +    L A+ R +   DEE+ T+  W + YLS  +N     +++
Sbjct: 190 SNFCRG-KPQPSFEQTR--PALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 246
Query: 294 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL 353
           +GV   LVE L    S  +LIP LR++GN+V GD +    ++   H     ++++L + L
Sbjct: 247 AGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCII--DHQALPCLLSLLTQNL 303
Query: 354 KSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNL 413
           K   + +KKEA W +SNI AG+ +  Q                   FDIKKE A+ + N 
Sbjct: 304 K---KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN- 359
Query: 414 CVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHE 473
               T G        + +  LV  GC+    DL+   DI    + L+ +E +L+     +
Sbjct: 360 ---ATSGGS-----HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDK 411
Query: 474 G---------TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                     +++++  +G++ +E  Q H+N ++   A  +++ Y+
Sbjct: 412 TLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 457

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 200/426 (46%), Gaps = 26/426 (6%)
Query: 96  MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 155
           MQ++++A             PPI+  ++AG +P LV+ +    P+   LEAAW LTNIA+
Sbjct: 13  MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 72
Query: 156 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 214
           G   +TK         +   L    S  V EQ  WALGNVAG+  ++R+ +L   A+ P+
Sbjct: 73  GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 132
Query: 215 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 274
             +   NK S +RTA W LSNL +G  P+P   +  V   L  + + +   D E   +  
Sbjct: 133 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 190
Query: 275 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 334
           W + YLS     A   ++   + + LVE L+  ++L +  P LR++GN+V G+      V
Sbjct: 191 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 249
Query: 335 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 394
           +  G      V+  L   L S    +KKEA W +SNI AG+ E  Q              
Sbjct: 250 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 303
Query: 395 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 454
                +  KKE  + + N   + + G  +P +I+     LV +GC+    DL+  AD   
Sbjct: 304 LEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 356
Query: 455 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 505
             + L  +E +L         RG+  +E    +E+  G++ +   Q +EN+ +   A  +
Sbjct: 357 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 416
Query: 506 VDKYFG 511
           ++ YFG
Sbjct: 417 IETYFG 422

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 201/428 (46%), Gaps = 26/428 (6%)
Query: 96  MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 155
           MQ++++A             PPI+  ++AG +P LV+ +    P+   LEAAW LTNIA+
Sbjct: 14  MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 73
Query: 156 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 214
           G   +TK         +   L    S  V EQ  WALGNVAG+  ++R+ +L   A+ P+
Sbjct: 74  GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 133
Query: 215 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 274
             +   NK S +RTA W LSNL +G  P+P   +  V   L  + + +   D E   +  
Sbjct: 134 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 191
Query: 275 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 334
           W + YLS     A   ++   + + LVE L+  ++L +  P LR++GN+V G+      V
Sbjct: 192 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 250
Query: 335 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 394
           +  G      V+  L   L S    +KKEA W +SNI AG+ E  Q              
Sbjct: 251 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 304
Query: 395 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 454
                   KKE  + + N   + + G  +P +I+     LV +GC+    DL+  AD   
Sbjct: 305 LEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 357
Query: 455 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 505
             + L  +E +L         RG+  +E    +E+  G++ +   Q +EN+ +   A  +
Sbjct: 358 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 417
Query: 506 VDKYFGED 513
           ++ YFGE+
Sbjct: 418 IETYFGEE 425

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 201/428 (46%), Gaps = 26/428 (6%)
Query: 96  MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 155
           MQ++++A             PPI+  ++AG +P LV+ +    P+   LEAAW LTNIA+
Sbjct: 14  MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 73
Query: 156 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 214
           G   +TK         +   L    S  V EQ  WALGNVAG+  ++R+ +L   A+ P+
Sbjct: 74  GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 133
Query: 215 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 274
             +   NK S +RTA W LSNL +G  P+P   +  V   L  + + +   D E   +  
Sbjct: 134 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 191
Query: 275 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 334
           W + YLS     A   ++   + + LVE L+  ++L +  P LR++GN+V G+      V
Sbjct: 192 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 250
Query: 335 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 394
           +  G      V+  L   L S    +KKEA W +SNI AG+ E  Q              
Sbjct: 251 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 304
Query: 395 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 454
                   KKE  + + N   + + G  +P +I+     LV +GC+    DL+  AD   
Sbjct: 305 LEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 357
Query: 455 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 505
             + L  +E +L         RG+  +E    +E+  G++ +   Q +EN+ +   A  +
Sbjct: 358 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 417
Query: 506 VDKYFGED 513
           ++ YFGE+
Sbjct: 418 IETYFGEE 425

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  179 bits (453), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 200/426 (46%), Gaps = 26/426 (6%)
Query: 96  MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 155
           MQ++++A             PPI+  ++AG +P LV+ +    P+   LEAAW LTNIA+
Sbjct: 13  MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 72
Query: 156 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 214
           G   +TK         +   L    S  V EQ  WALGNVAG+  ++R+ +L   A+ P+
Sbjct: 73  GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 132
Query: 215 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 274
             +   NK S +RTA W LSNL +G  P+P   +  V   L  + + +   D E   +  
Sbjct: 133 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 190
Query: 275 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 334
           W + YLS     A   ++   + + LVE L+  ++L +  P LR++GN+V G+      V
Sbjct: 191 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 249
Query: 335 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 394
           +  G      V+  L   L S    +KKEA W +SNI AG+ E  Q              
Sbjct: 250 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 303
Query: 395 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 454
                +  KKE  + + N   + + G  +P +I+     LV +GC+    DL+  AD   
Sbjct: 304 LEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 356
Query: 455 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 505
             + L  +E ++         RG+  +E    +E+  G++ +   Q +EN+ +   A  +
Sbjct: 357 IEVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 416
Query: 506 VDKYFG 511
           ++ YFG
Sbjct: 417 IETYFG 422

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 202/440 (45%), Gaps = 26/440 (5%)
Query: 82  EELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 141
           +EL           MQ++++A             PPI+  ++AG +P LV+ +    P+ 
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 142 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 200
             LEAAW LTNIA+G   +TK         +   L    S  V EQ  WALGNVAG+  +
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 260
           +R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+P   +  V   L  + +
Sbjct: 121 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAK 178
Query: 261 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 320
            +   D E   +  W + YLS     A   ++   + + LVE L+  ++L +  P LR++
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAV 237
Query: 321 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 380
           GN+V G+      V+  G      V+  L   L S    +KKEA W +SNI AG+ E  Q
Sbjct: 238 GNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 381 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 440
                                 KKE  + + N   + + G  +P +I+     LV +GC+
Sbjct: 292 AVIDANLIPPLVKLLEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCI 344
Query: 441 SGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQ 491
               DL+  AD     + L  +E +L         RG+  +E    +E+  G++ +   Q
Sbjct: 345 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 404
Query: 492 FHENEDLRNMANGLVDKYFG 511
            +EN+ +   A  +++ YFG
Sbjct: 405 QNENDKIYEKAYKIIETYFG 424

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  175 bits (443), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 201/439 (45%), Gaps = 26/439 (5%)
Query: 82  EELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 141
           +EL           MQ++++A             PPI+  ++AG +P LV+ +    P+ 
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 142 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 200
             LEAAW LTNIA+G   +TK         +   L    S  V EQ  WALGNVAG+  +
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 260
           +R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+P   +  V   L  + +
Sbjct: 121 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAK 178
Query: 261 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 320
            +   D E   +  W + YLS     A   ++   + + LVE L+  ++L +  P LR++
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAV 237
Query: 321 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 380
           GN+V G+      V+  G      V+  L   L S    +KKEA W +SNI AG+ E  Q
Sbjct: 238 GNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 381 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 440
                                 KKE  + + N   + + G  +P +I+     LV +GC+
Sbjct: 292 AVIDANLIPPLVKLLEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCI 344
Query: 441 SGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQ 491
               DL+  AD     + L  +E +L         RG+  +E    +E+  G++ +   Q
Sbjct: 345 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 404
Query: 492 FHENEDLRNMANGLVDKYF 510
            +EN+ +   A  +++ YF
Sbjct: 405 QNENDKIYEKAYKIIETYF 423

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 91  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 211 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 269 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 321
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 382 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 77  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 136
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 137 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 196
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 197 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 254
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 255 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 307
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 308 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 367
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 368 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 418
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 419 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 463

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 75  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 134
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 135 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 194
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 195 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 252
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 253 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 305
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 306 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 365
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 366 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 416
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 417 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 461

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 91  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 211 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 269 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 321
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 382 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 91  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 211 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 269 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 321
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 382 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 67  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 126
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 127 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 186
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 187 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 244
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 245 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 297
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 298 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 357
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 358 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 408
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 409 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 453

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 41  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 100
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 101 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 160
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 161 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 218
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 219 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 271
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 332 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 47  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 106
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 107 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 166
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 167 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 224
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 225 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 277
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 278 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 337
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 338 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 388
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 389 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  165 bits (417), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 40  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 99
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 100 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 159
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 160 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 217
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 218 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 270
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 271 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 330
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 331 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 381
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 382 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  165 bits (417), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 36  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 95
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 96  LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 155
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 156 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 213
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 214 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 266
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 267 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 326
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 327 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 377
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 378 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  165 bits (417), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 40  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 99
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 100 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 159
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 160 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 217
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 218 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 270
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 271 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 330
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 331 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 381
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 382 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  165 bits (417), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 41  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 100
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 101 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 160
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 161 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 218
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 219 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 271
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 332 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  165 bits (417), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 36  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 95
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 96  LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 155
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 156 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 213
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 214 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 266
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 267 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 326
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 327 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 377
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 378 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  165 bits (417), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 41  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 100
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 101 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 160
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 161 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 218
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 219 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 271
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 332 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  164 bits (416), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 188/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 42  PPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 101
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  S     +R  
Sbjct: 102 LLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNL 161
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P  +   V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 162 TWTLSNLCRNKNPAPPID--AVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIG 219
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK+GV+  LV+ L  S  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 220 MVVKTGVVPQLVKLLGAS-ELPIVTPALRAIGNIVTGTDEQTQVVIDAG------ALAVF 272
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +KE  + 
Sbjct: 273 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWA 332
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +   + L  +  + +  
Sbjct: 333 VTNYTSGGT---------VEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAA 383
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 384 EKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYF 428

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 187/405 (46%), Gaps = 28/405 (6%)
Query: 116 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 174
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 110 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 169
Query: 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 229
           L     + ++EQ  WALGN+AG G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 170 LLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 229
Query: 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 230 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 287
Query: 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 288 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 340
Query: 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 409
              L +    ++KEA W +SNI AG  +  Q                   F  +K  A+ 
Sbjct: 341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA 400
Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 401 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451
Query: 470 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 452 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  152 bits (383), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 180/410 (43%), Gaps = 30/410 (7%)
Query: 116 PPIETALKA-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-A 173
           PPI+  +   G +   V+ L          E+AW LTNIA+G   +T+         I  
Sbjct: 54  PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 113
Query: 174 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWA 232
            L       V EQ  WALGN+AG+    R+ +L    LPPL ++    N+ +  R A WA
Sbjct: 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173
Query: 233 LSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV 292
           LSNL +G  P P  E  KV   L+ +   L  +D ++  +  W + YLS   N     ++
Sbjct: 174 LSNLCRGKSPPP--EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 231
Query: 293 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC 352
            +GV + LVE L   N  +++ P LR++GN+V GD      +L      +   +    K 
Sbjct: 232 DAGVCRRLVE-LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK- 289
Query: 353 LKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGN 412
                  +KKEA W +SNI AG+    Q                   F  +KE A+ + N
Sbjct: 290 -----ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344
Query: 413 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR----- 467
                T G        E +  LV  GC+    DL+   D +  ++ L  +E +LR     
Sbjct: 345 ----ATSGGSA-----EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 395
Query: 468 ----GMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
               G   +    L+E   G+D +E  Q HEN+++   A  L++ YFG +
Sbjct: 396 AKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  152 bits (383), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 180/410 (43%), Gaps = 30/410 (7%)
Query: 116 PPIETALKA-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-A 173
           PPI+  +   G +   V+ L          E+AW LTNIA+G   +T+         I  
Sbjct: 51  PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 110
Query: 174 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWA 232
            L       V EQ  WALGN+AG+    R+ +L    LPPL ++    N+ +  R A WA
Sbjct: 111 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 170
Query: 233 LSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV 292
           LSNL +G  P P  E  KV   L+ +   L  +D ++  +  W + YLS   N     ++
Sbjct: 171 LSNLCRGKSPPP--EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 228
Query: 293 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC 352
            +GV + LVE L   N  +++ P LR++GN+V GD      +L      +   +    K 
Sbjct: 229 DAGVCRRLVE-LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK- 286
Query: 353 LKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGN 412
                  +KKEA W +SNI AG+    Q                   F  +KE A+ + N
Sbjct: 287 -----ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 341
Query: 413 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR----- 467
                T G        E +  LV  GC+    DL+   D +  ++ L  +E +LR     
Sbjct: 342 ----ATSGGSA-----EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 392
Query: 468 ----GMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
               G   +    L+E   G+D +E  Q HEN+++   A  L++ YFG +
Sbjct: 393 AKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 442

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 16/175 (9%)
Query: 118 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 176
           I+  + AGA+P LVQ L+  SP+EQ+L EA W L+NIA+G  E+ +         +  L 
Sbjct: 47  IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ--AVIDAGALPALV 102
Query: 177 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 233
           +  SSP   + ++  WAL N+A  G E    ++  GALP L +++       ++ A WAL
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 234 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 288
           SN+  G + +   + +   G L A+++ L   +E++  E  W      ALSN+A+
Sbjct: 163 SNIASGGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALW------ALSNIAS 209

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 194 VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG 253
           +  +G E    ++  GALP L +++       ++ A WALSN+  G + +   + +   G
Sbjct: 39  ILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--IQAVIDAG 96
Query: 254 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL 313
            L A+++ L   +E++  E  W +  +++  N     ++ +G L  LV+ L++ N  Q+L
Sbjct: 97  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QIL 155
Query: 314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373
              L +L N+ +G +  I  V+  G       +  LV+ L S +  + +EA W LSNIA+
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIAS 209
Query: 374 GSVEHKQ 380
           G  E KQ
Sbjct: 210 GGNEQKQ 216

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 19/219 (8%)
Query: 291 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 350
           ++ +G L  LV+ L++ N  Q+L   L +L N+ +G +  I  V+  G       +  LV
Sbjct: 50  VIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAG------ALPALV 102
Query: 351 KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVL 410
           + L S +  + +EA W LSNIA+G  E  Q                     I +E  + L
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 411 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 470
            N+     E           + +++  G L   + L+ S + +  +  L  +  +  G  
Sbjct: 163 SNIASGGNE----------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-- 210
Query: 471 NHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 509
            +E  + V+    ++ +E+ Q HENE ++  A   ++K 
Sbjct: 211 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Query: 118 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 176
           I+  + AGA+P LVQ L+  SP+EQ+L EA W L+NIA+G  E+ +         +  L 
Sbjct: 47  IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ--AVIDAGALPALV 102
Query: 177 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 233
           +  SSP   + ++  WAL N+A  G E    ++  GALP L +++       ++ A WAL
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 234 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE 272
           SN+  G + +   + +K  G L+ + +     +E++  E
Sbjct: 163 SNIASGGNEQ--KQAVKEAGALEKLEQLQSHENEKIQKE 199

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 253 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 312
           G L A+++ L   +E++  E  W +  +++  N     ++ +G L  LV+ L++ N  Q+
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 112
Query: 313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372
           L   L +L N+ +G +  I  V+  G       +  LV+ L S +  + +EA W LSNIA
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 373 AGSVEHKQ 380
           +G  E KQ
Sbjct: 167 SGGNEQKQ 174

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 81/204 (39%), Gaps = 18/204 (8%)
Query: 306 TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 365
            S+ +Q  +   R    +++  +  I  V+  G       +  LV+ L S +  + +EA 
Sbjct: 22  NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEAL 75
Query: 366 WVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPK 425
           W LSNIA+G  E  Q                     I +E  + L N+     E      
Sbjct: 76  WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE------ 129
Query: 426 LIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID 485
                + +++  G L   + L+ S + +  +  L  +  +  G   +E  + V+    ++
Sbjct: 130 ----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALE 183
Query: 486 AMERFQFHENEDLRNMANGLVDKY 509
            +E+ Q HENE ++  A   ++K 
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Query: 118 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 176
           I+  + AGA+P LVQ L+  SP+EQ+L EA W L+NIA+G  E+ +         +  L 
Sbjct: 47  IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ--AVIDAGALPALV 102
Query: 177 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 233
           +  SSP   + ++  WAL N+A  G E    ++  GALP L +++       ++ A WAL
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 234 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE 272
           SN+  G + +   + +K  G L+ + +     +E++  E
Sbjct: 163 SNIASGGNEQ--KQAVKEAGALEKLEQLQSHENEKIQKE 199

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 253 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 312
           G L A+++ L   +E++  E  W +  +++  N     ++ +G L  LV+ L++ N  Q+
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 112
Query: 313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372
           L   L +L N+ +G +  I  V+  G       +  LV+ L S +  + +EA W LSNIA
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 373 AGSVEHKQ 380
           +G  E KQ
Sbjct: 167 SGGNEQKQ 174

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 19/210 (9%)
Query: 300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359
           +V++L + +  Q L   LR L  + +G +  I  V+  G       +  LV+ L S +  
Sbjct: 17  MVQQLNSPDQ-QELQSALRKLSQIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQ 69
Query: 360 LKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTE 419
           + +EA W LSNIA+G  E  Q                     I +E  + L N+     E
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 420 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVE 479
                      + +++  G L   + L+ S + +  +  L  +  +  G   +E  + V+
Sbjct: 130 ----------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVK 177
Query: 480 REDGIDAMERFQFHENEDLRNMANGLVDKY 509
               ++ +E+ Q HENE ++  A   ++K 
Sbjct: 178 EAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 118 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 176
           I+  + AGA+P LVQ L+  SP+EQ+L EA W L+NIA+G  E+ +         +  L 
Sbjct: 47  IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGA--LPALV 102
Query: 177 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 233
           +  SSP   + ++  WAL N+A  G E    ++  GALP L +++       ++ A WAL
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 234 SNLIKG 239
           SN+  G
Sbjct: 163 SNIASG 168

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 253 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 312
           G L A+++ L   +E++  E  W +  +++  N     ++ +G L  LV+ L++ N  Q+
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 112
Query: 313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372
           L   L +L N+ +G +  I  V+  G       +  LV+ L S +  + +EA W LSNIA
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 373 AGSVEHKQ 380
           +G  E KQ
Sbjct: 167 SGGNEQKQ 174

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 10/231 (4%)
Query: 145 EAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 203
           EAA  L  IA+G     K         +   L   + S V ++ A AL N+A   +E   
Sbjct: 21  EAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80
Query: 204 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK 263
            ++  G +  L +++        + AA AL+N+  GPD   A + I   G ++ +++ L 
Sbjct: 81  AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EAIKAIVDAGGVEVLVKLLT 138
Query: 264 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 323
             D E+  E A  +  +++  + A   +V +G +++LV +L TS   ++     R+L N+
Sbjct: 139 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV-KLLTSTDSEVQKEAARALANI 197
Query: 324 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 374
            +G +S I  ++  G       + VL K L S    ++KEA   L NI +G
Sbjct: 198 ASGPTSAIKAIVDAGG------VEVLQKLLTSTDSEVQKEAQRALENIKSG 242

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	518
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-103
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-96
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-94
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-24
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-44
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-35
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-43
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-38
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-38
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-35
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-31
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-28
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-23
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-22
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-40
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-39
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-34
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-24
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-18
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-39
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-27
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-23
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-10
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-34
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-28
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-28
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-13
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-31
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-29
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-28
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-26
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-26
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-30
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-28
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-26
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-23
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-19
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-21
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-19
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-17
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-13
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-10
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-10
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	8e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	9e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  318 bits (816), Expect = e-103
 Identities = 147/527 (27%), Positives = 245/527 (46%), Gaps = 36/527 (6%)

Query: 1   MADDSLNHHKRDPIKSSVGNVAA---QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGE 57
                +  ++R   K+     A    +RR    V + K +R+  +  +R        DG 
Sbjct: 8   STSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRR--NFIPPTDGA 65

Query: 58  VSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPP 117
            S + D            Q    + ++   +       MQ++++A  + R++LSR   PP
Sbjct: 66  DSDEEDESSVSADQQFYSQLQQELPQMTQQLN---SDDMQEQLSATVKFRQILSREHRPP 122

Query: 118 IETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHL 175
           I+  ++AG +P LV+ +    P+   LEAAW LTNIA+G   +TK ++   A+PL I  L
Sbjct: 123 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL 182

Query: 176 GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN 235
               S  V EQ  WALGNVAG+  ++R+ +L   A+ P+  +   NK S +RTA W LSN
Sbjct: 183 -YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241

Query: 236 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG 295
           L +G  P+P  +   V   L  + + +   D E   +  W + YLS     A   ++   
Sbjct: 242 LCRGKKPQP--DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 299

Query: 296 VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS 355
           + + LVE L +  S  +  P LR++GN+V G+      V+  G      V+  L   L S
Sbjct: 300 IPKRLVE-LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG------VLPALRLLLSS 352

Query: 356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415
               +KKEA W +SNI AG+ E  Q +  +  +  L+ LL  + +  KKE  + + N   
Sbjct: 353 PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412

Query: 416 SPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR-------- 467
              +         + +  LV +GC+    DL+  AD     + L  +E +L+        
Sbjct: 413 GGLQ-------RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA 465

Query: 468 -GMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
            G+  +E    +E+  G++ +   Q +EN+ +   A  +++ YFGE+
Sbjct: 466 RGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  299 bits (767), Expect = 5e-96
 Identities = 139/506 (27%), Positives = 240/506 (47%), Gaps = 35/506 (6%)

Query: 24  QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 83
                + +       +    AK   +   S D  + +D D     +    +   + +VE+
Sbjct: 4   HHHHSSGLVPRGSGMKETAAAKFERQHMDSPD--LGTDDDDKAMADIGSNQGTVNWSVED 61

Query: 84  LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQL 143
           +   +       ++ ++ A +  R+LLSR + PPI+  ++AG IP  V  L         
Sbjct: 62  IVKGIN---SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 118

Query: 144 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF 201
            E+AW LTNIA+G  E+TKA++   A+P  I+ L     + ++EQ  WALGN+AG+G  F
Sbjct: 119 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSAF 177

Query: 202 RNVLLSQGALPPLARMMLPNKGST-----VRTAAWALSNLIKGPDPKPATELIKVDGLLD 256
           R++++  GA+ PL  ++     ST     +R   W LSNL +  +P P   L  V+ +L 
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP--PLDAVEQILP 235

Query: 257 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 316
            ++R L   D E+  +  W + YL+   N    ++VK GV+  LV+ L  +  L ++ P 
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK-LLGATELPIVTPA 294

Query: 317 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 376
           LR++GN+V G       V+  G       +AV    L +    ++KEA W +SNI AG  
Sbjct: 295 LRAIGNIVTGTDEQTQKVIDAG------ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348

Query: 377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 436
           +  Q + +   +  L+ +LS + F  +KE A+ + N     T          E +V LV 
Sbjct: 349 DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT---------VEQIVYLVH 399

Query: 437 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGT----KLVEREDGIDAMERFQF 492
            G +   ++L+ + D +  ++ L  +  + +       T     ++E   G+D +E  Q 
Sbjct: 400 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459

Query: 493 HENEDLRNMANGLVDKYFGEDYGLDE 518
           HENE +   +  L++KYF  +   D+
Sbjct: 460 HENESVYKASLNLIEKYFSVEEEEDQ 485

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  292 bits (749), Expect = 5e-94
 Identities = 128/426 (30%), Positives = 203/426 (47%), Gaps = 32/426 (7%)

Query: 101 NALRELRRLLSRFEFPPIETAL-KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 159
           +A ++ R+LLS+   PPI+  +   G +   V+ L          E+AW LTNIA+G   
Sbjct: 39  SATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL 98

Query: 160 ETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 217
           +T+ ++   A+P+ I  L       V EQ  WALGN+AG+    R+ +L    LPPL ++
Sbjct: 99  QTRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157

Query: 218 ML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWV 276
               N+ +  R A WALSNL +G  P P  E  KV   L+ +   L  +D ++  +  W 
Sbjct: 158 FSKQNRLTMTRNAVWALSNLCRGKSPPP--EFAKVSPCLNVLSWLLFVSDTDVLADACWA 215

Query: 277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 336
           + YLS   N     ++ +GV + LVE L   N  +++ P LR++GN+V GD      +L 
Sbjct: 216 LSYLSDGPNDKIQAVIDAGVCRRLVE-LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN 274

Query: 337 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 396
                    +  L+  L S    +KKEA W +SNI AG+    Q +  +     L+ +L 
Sbjct: 275 CS------ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 328

Query: 397 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 456
           T+ F  +KE A+ + N     +          E +  LV  GC+    DL+   D +  +
Sbjct: 329 TAEFRTRKEAAWAITNATSGGSA---------EQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 457 LGLQFMELVLRGMPNHEGT---------KLVEREDGIDAMERFQFHENEDLRNMANGLVD 507
           + L  +E +LR                  L+E   G+D +E  Q HEN+++   A  L++
Sbjct: 380 VALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE 439

Query: 508 KYFGED 513
            YFG +
Sbjct: 440 HYFGTE 445

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  105 bits (263), Expect = 1e-24
 Identities = 58/315 (18%), Positives = 130/315 (41%), Gaps = 23/315 (7%)

Query: 192 GNVAGEGEEFRNVLLSQ--GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI 249
           G +     +  N+ ++        +  M+         +A      L+      P  E+I
Sbjct: 1   GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60

Query: 250 KVDGLLDAILRHLKRAD-EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN 308
              G++   +  LKR +   L  E AWV+  +++ +++ T +++++G + + +E L +S 
Sbjct: 61  STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE-LLSSE 119

Query: 309 SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWV 367
              +    + +LGN+ AGDS+   D ++    I    +  L++    ++R+ + + A W 
Sbjct: 120 FEDVQEQAVWALGNI-AGDSTMCRDYVL-DCNI----LPPLLQLFSKQNRLTMTRNAVWA 173

Query: 368 LSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI 427
           LSN+  G     +    S  L +L  LL  S  D+  +  + L  L   P +   K + +
Sbjct: 174 LSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND---KIQAV 230

Query: 428 QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM 487
            +        G     ++L+   D +     L+ +  ++ G  +   T+++     + ++
Sbjct: 231 IDA-------GVCRRLVELLMHNDYKVVSPALRAVGNIVTG--DDIQTQVILNCSALQSL 281

Query: 488 ERFQFHENEDLRNMA 502
                   E ++  A
Sbjct: 282 LHLLSSPKESIKKEA 296

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  155 bits (395), Expect = 2e-44
 Identities = 68/233 (29%), Positives = 125/233 (53%), Gaps = 10/233 (4%)

Query: 96  MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIA 154
           MQ++++A R+  ++LS      I+  + AGA+P LVQ L   SP+EQ+L EA W L+NIA
Sbjct: 26  MQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLL--SSPNEQILQEALWALSNIA 82

Query: 155 AGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALP 212
           +G  E+ +A++   ALP L+  L    +  + ++  WAL N+A  G E    ++  GALP
Sbjct: 83  SGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141

Query: 213 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE 272
            L +++       ++ A WALSN+  G + +   + +   G L A+++ L   +E++  E
Sbjct: 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQI--QAVIDAGALPALVQLLSSPNEQILQE 199

Query: 273 VAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325
             W +  +++  N     + ++G L+ L + L +  + ++      +L  L +
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  130 bits (329), Expect = 6e-35
 Identities = 61/258 (23%), Positives = 113/258 (43%), Gaps = 19/258 (7%)

Query: 253 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 312
             L  + + L   D +           + +  N     ++ +G L  LV+ L +S + Q+
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ-LLSSPNEQI 70

Query: 313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372
           L   L +L N+ +G +  I  V+  G       +  LV+ L S +  + +EA W LSNIA
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 373 AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV 432
           +G  E  Q +  + AL  L+ LLS+    I +E  + L N+               E + 
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN----------EQIQ 174

Query: 433 SLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF 492
           +++  G L   + L+ S + +  +  L  +  +  G   +E  + V+    ++ +E+ Q 
Sbjct: 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQS 232

Query: 493 HENEDLRNMANGLVDKYF 510
           HENE ++  A   ++K  
Sbjct: 233 HENEKIQKEAQEALEKLQ 250

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  159 bits (405), Expect = 3e-43
 Identities = 70/370 (18%), Positives = 126/370 (34%), Gaps = 37/370 (10%)

Query: 96  MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 155
           ++        L  L    E   +    K+G IP LV+ L           A   L N+  
Sbjct: 74  VETARCTAGTLHNLSHHRE--GLLAIFKSGGIPALVKMLGSPVDSVLF-YAITTLHNLLL 130

Query: 156 GKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP 213
            ++    A+     L  ++A L + +           L  +A   +E + ++L+ G    
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVK-FLAITTDCLQILAYGNQESKLIILASGGPQA 189

Query: 214 LARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE 272
           L  +M        + T +  L  L      KPA   I   G + A+  HL    + L   
Sbjct: 190 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRLVQN 246

Query: 273 VAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS 332
             W    L  LS+ AT      G+L  LV+ L  S+ + ++      L NL   +     
Sbjct: 247 CLWT---LRNLSDAATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYKNKM 302

Query: 333 DVLVPGHGITDQVIAVLVKCL--KSEHRVLKKEAAWVLSNIAAGSVEH---KQLIHSSEA 387
            V   G       I  LV+ +    +   + + A   L ++ +   E    +  +     
Sbjct: 303 MVCQVG------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356

Query: 388 LALLLHLLSTSPFDIKKEVAY-VLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL 446
           L +++ LL         +    ++ NL + P            +   L  +G +   + L
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQL 405

Query: 447 VRSADIEAAR 456
           +  A  +  R
Sbjct: 406 LVRAHQDTQR 415

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  146 bits (371), Expect = 1e-38
 Identities = 65/421 (15%), Positives = 134/421 (31%), Gaps = 34/421 (8%)

Query: 99  RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 158
              A+  L  LL   E   +     AG +  +V  L   +          CL  +A G Q
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKTNVKFLA-ITTDCLQILAYGNQ 175

Query: 159 EETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR 216
           E    +L       L+  +   +   +    +  L  ++      +  ++  G +  L  
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGL 234

Query: 217 MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWV 276
            +       V+   W L NL         T+   ++GLL  +++ L   D  + T  A +
Sbjct: 235 HLTDPSQRLVQNCLWTLRNLSDAA-----TKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 289

Query: 277 VVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSSTISDVL 335
           +  L+  +     ++ + G ++ LV  +  +     +  P + +L +L +         +
Sbjct: 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE---AEM 346

Query: 336 VPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 395
                     + V+VK L         +A   L    A    +   +    A+  L+ LL
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406

Query: 396 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS--------------LVGRGCLS 441
             +  D ++  +               + + I E                  + G   + 
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFV---EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463

Query: 442 GFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNM 501
            F+ L+ S      R+      ++     + E  + +E E     +       NE +   
Sbjct: 464 LFVQLLYSPIENIQRVAA---GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520

Query: 502 A 502
           A
Sbjct: 521 A 521

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  145 bits (368), Expect = 5e-38
 Identities = 60/358 (16%), Positives = 121/358 (33%), Gaps = 28/358 (7%)

Query: 99  RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 158
              A   + +L S+ E            +  +V+ +   +  E     A  L N++    
Sbjct: 34  VNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS--HH 90

Query: 159 EETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA 215
            E    +     +P L+  LG    S V       L N+    E  +  +   G L  + 
Sbjct: 91  REGLLAIFKSGGIPALVKMLGSPVDS-VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 149

Query: 216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAW 275
            ++       +      L  L  G        +I   G   A++  ++    E       
Sbjct: 150 ALLNKTNVKFLAITTDCLQILAYGNQESKL--IILASGGPQALVNIMRTYTYEKLLWTTS 207

Query: 276 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVL 335
            V+ + ++ +     +V++G +Q L     T  S +L+   L +L NL    +       
Sbjct: 208 RVLKVLSVCSSNKPAIVEAGGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAATKQE---- 262

Query: 336 VPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 395
                  + ++  LV+ L S+   +   AA +LSN+   + ++K ++     +  L+  +
Sbjct: 263 -----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317

Query: 396 --STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD 451
             +    DI +     L +L     E E     ++ H         L   + L+    
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-------YGLPVVVKLLHPPS 368

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  137 bits (348), Expect = 2e-35
 Identities = 55/300 (18%), Positives = 112/300 (37%), Gaps = 16/300 (5%)

Query: 122 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKS 179
           L   AIP L + L          +AA  +  ++  +      +     +  ++  +   +
Sbjct: 14  LATRAIPELTKLLNDEDQVVV-NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72

Query: 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239
               A   A  L N++    E    +   G +P L +M+     S +  A   L NL+  
Sbjct: 73  DVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131

Query: 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 299
            +   A   +++ G L  ++  L + + +        +  L+  +  +  +++ SG  Q 
Sbjct: 132 QE--GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 189

Query: 300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359
           LV  + T    +LL    R L  L +  SS    ++  G       +  L   L    + 
Sbjct: 190 LVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAG------GMQALGLHLTDPSQR 242

Query: 360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTE 419
           L +   W L N++  + + + +      L  L+ LL +   ++    A +L NL  +  +
Sbjct: 243 LVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  126 bits (319), Expect = 1e-31
 Identities = 57/335 (17%), Positives = 110/335 (32%), Gaps = 25/335 (7%)

Query: 97  QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG 156
           +      R L+ +LS          ++AG +  L   L   S    +    W L N++  
Sbjct: 201 KLLWTTSRVLK-VLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLSDA 257

Query: 157 KQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR 216
             ++   +   L  L+  L       V    A  L N+     + + ++   G +  L R
Sbjct: 258 ATKQE-GMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315

Query: 217 MMLPN--KGSTVRTAAWALSNLIKG-PDPKPATELIKVDGLLDAILRHLKRADEELTTEV 273
            +L    +      A  AL +L     + + A   +++   L  +++ L         + 
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375

Query: 274 AWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD 333
              ++   AL     + L + G +  LV+ L                      +   + +
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQ-LLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 434

Query: 334 VLVPGHGI---------------TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 378
           ++    G                    I + V+ L S    +++ AA VL  +A    E 
Sbjct: 435 IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEA 493

Query: 379 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL 413
            + I +  A A L  LL +    +    A VL  +
Sbjct: 494 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  116 bits (291), Expect = 7e-28
 Identities = 50/274 (18%), Positives = 94/274 (34%), Gaps = 15/274 (5%)

Query: 167 ALPLLIAHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGS 224
           A+P L   L        V  + A  +  ++ +      ++ S   +  + R M   N   
Sbjct: 18  AIPELTKLL--NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75

Query: 225 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS 284
           T R  A  L NL    +       I   G + A+++ L    + +       +  L    
Sbjct: 76  TARCTAGTLHNLSHHREGL---LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 285 NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 344
             A   +  +G LQ +V  L    +++ L      L  L  G+  +   +L  G      
Sbjct: 133 EGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASG------ 185

Query: 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 404
               LV  +++            +  + +    +K  I  +  +  L   L+     + +
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245

Query: 405 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 438
              + L NL  + T+ EG   L+   LV L+G  
Sbjct: 246 NCLWTLRNLSDAATKQEGMEGLLG-TLVQLLGSD 278

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  102 bits (257), Expect = 2e-23
 Identities = 45/268 (16%), Positives = 98/268 (36%), Gaps = 24/268 (8%)

Query: 190 ALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI 249
           A+ N+    +   +  L+  A+P L +++       V  AA  +  L K    +    ++
Sbjct: 1   AVVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR--HAIM 55

Query: 250 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS 309
           +   ++ AI+R ++  ++  T       ++  +        + KSG +  LV+ L +   
Sbjct: 56  RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 115

Query: 310 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS 369
             +L   + +L NL+         V + G       +  +V  L   +          L 
Sbjct: 116 -SVLFYAITTLHNLLLHQEGAKMAVRLAG------GLQKMVALLNKTNVKFLAITTDCLQ 168

Query: 370 NIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE-VAYVLGNLCVSPTEGEGKPKLIQ 428
            +A G+ E K +I +S     L++++ T  ++      + VL  L V       KP +++
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVE 225

Query: 429 EHLVSLVGRGCLSGFIDLVRSADIEAAR 456
                    G +      +        +
Sbjct: 226 A--------GGMQALGLHLTDPSQRLVQ 245

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 98.3 bits (245), Expect = 5e-22
 Identities = 47/276 (17%), Positives = 87/276 (31%), Gaps = 38/276 (13%)

Query: 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSS 181
            G +  LVQ L     +     AA  L+N+     +    +     +  L+  +      
Sbjct: 265 EGLLGTLVQLLGSDDINVVT-CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323

Query: 182 P-VAEQCAWALGNVA---GEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI 237
             + E    AL ++     E E  +N +     LP + +++ P     +  A   L   +
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

Query: 238 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVY----------------LS 281
               P     L +  G +  +++ L RA ++     +                       
Sbjct: 384 AL-CPANHAPLRE-QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG 441

Query: 282 ALSNVATS-----LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 336
           AL  +A       ++     + L V+ L  S    +       L  L A D      +  
Sbjct: 442 ALHILARDVHNRIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEA 499

Query: 337 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372
            G        A L + L S +  +   AA VL  ++
Sbjct: 500 EG------ATAPLTELLHSRNEGVATYAAAVLFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  155 bits (393), Expect = 1e-40
 Identities = 57/356 (16%), Positives = 121/356 (33%), Gaps = 24/356 (6%)

Query: 99  RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 158
              A   + +L S+ E            +  +V+ +   +  E     +  L N++  ++
Sbjct: 167 VNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE 225

Query: 159 -EETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 217
                     +P L+  LG    S V       L N+    E  +  +   G L  +  +
Sbjct: 226 GLLAIFKSGGIPALVNMLGSPVDS-VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284

Query: 218 MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 277
           +       +      L  L  G        +I   G   A++  ++    E        V
Sbjct: 285 LNKTNVKFLAITTDCLQILAYGNQES--KLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342

Query: 278 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 337
           + + ++ +     +V++G +Q L     T  S +L+   L +L NL    +         
Sbjct: 343 LKVLSVCSSNKPAIVEAGGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAAT--------- 392

Query: 338 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-- 395
                + ++  LV+ L S+   +   AA +LSN+   + ++K ++     +  L+  +  
Sbjct: 393 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452

Query: 396 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD 451
           +    DI +     L +L     + E     ++ H         L   + L+    
Sbjct: 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH-------YGLPVVVKLLHPPS 501

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  150 bits (381), Expect = 4e-39
 Identities = 70/422 (16%), Positives = 143/422 (33%), Gaps = 40/422 (9%)

Query: 101 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160
           +A+  L  LL   E   +     AG +  +V  L   +  + L     CL  +A G QE 
Sbjct: 253 HAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQES 310

Query: 161 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM 218
              +L       L+  +   +   +    +  L  ++      +  ++  G +  L   +
Sbjct: 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL 369

Query: 219 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV 278
                  V+   W L NL         T+   ++GLL  +++ L   D  + T  A ++ 
Sbjct: 370 TDPSQRLVQNCLWTLRNLSDAA-----TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424

Query: 279 YLSALSNVATSLLVKSGVLQLLVERL-ATSNSLQLLIPVLRSLGNLVAG--DSSTISDVL 335
            L+  +     ++ + G ++ LV  +    +   +  P + +L +L +   D+    + +
Sbjct: 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484

Query: 336 VPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 395
              +G+      V+VK L         +A   L    A    +   +    A+  L+ LL
Sbjct: 485 RLHYGL-----PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 539

Query: 396 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS--------------LVGRGCLS 441
             +  D ++  +               + + I E                  + G   + 
Sbjct: 540 VRAHQDTQRRTSMGGTQQQFV---EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596

Query: 442 GFIDLVRSADIEAARLGLQFMELVLRGM-PNHEGTKLVEREDGIDAMERFQFHENEDLRN 500
            F+ L+ S      R+       VL  +  + E  + +E E     +       NE +  
Sbjct: 597 LFVQLLYSPIENIQRVAAG----VLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 652

Query: 501 MA 502
            A
Sbjct: 653 YA 654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  137 bits (346), Expect = 1e-34
 Identities = 68/388 (17%), Positives = 128/388 (32%), Gaps = 23/388 (5%)

Query: 53  SADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSR 112
           S  G+ + + D + ++     E   + +  + + A         + +          L  
Sbjct: 45  SLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDE 104

Query: 113 FEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLI 172
               P      A   P  VQ LA   P + L  A   L N     Q++ +    A+P L 
Sbjct: 105 GMQIPSTQFDSA--HPTNVQRLA--EPSQMLKHAVVNLIN----YQDDAELATRAIPELT 156

Query: 173 AHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAA 230
             L        V  + A  +  ++ +      ++ S   +  + R M   N   T R  +
Sbjct: 157 KLL--NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTS 214

Query: 231 WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL 290
             L NL    +       I   G + A++  L    + +       +  L      A   
Sbjct: 215 GTLHNLSHHREGL---LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271

Query: 291 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 350
           +  +G LQ +V  L    +++ L      L  L  G+  +   +L  G          LV
Sbjct: 272 VRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASG------GPQALV 324

Query: 351 KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 410
             +++            +  + +    +K  I  +  +  L   L+     + +   + L
Sbjct: 325 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384

Query: 411 GNLCVSPTEGEGKPKLIQEHLVSLVGRG 438
            NL  + T+ EG   L+   LV L+G  
Sbjct: 385 RNLSDAATKQEGMEGLLG-TLVQLLGSD 411

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  106 bits (266), Expect = 2e-24
 Identities = 48/300 (16%), Positives = 92/300 (30%), Gaps = 38/300 (12%)

Query: 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSS 181
            G +  LVQ L     +     AA  L+N+     +    +     +  L+  +      
Sbjct: 398 EGLLGTLVQLLGSDDINVVT-CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 456

Query: 182 P-VAEQCAWALGNVA---GEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI 237
             + E    AL ++     + E  +N +     LP + +++ P     +  A   L   +
Sbjct: 457 EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516

Query: 238 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS---------------- 281
               P     L +   +   +++ L RA ++     +                       
Sbjct: 517 AL-CPANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTG 574

Query: 282 ALSNVATS-----LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 336
           AL  +A       ++     + L V+ L  S    +       L  L A D      +  
Sbjct: 575 ALHILARDIHNRIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEA 632

Query: 337 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 396
            G        A L + L S +  +   AA VL  ++    +  +   S E  + L     
Sbjct: 633 EG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 686

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 87.8 bits (217), Expect = 2e-18
 Identities = 41/279 (14%), Positives = 86/279 (30%), Gaps = 24/279 (8%)

Query: 224 STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 283
              +    A+ NLI   D     +       +  + + L   D+ +  + A +V  LS  
Sbjct: 126 EPSQMLKHAVVNLINYQD-----DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK 180

Query: 284 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD 343
                +++    ++  +V  +  +N ++       +L NL       ++     G     
Sbjct: 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGG----- 235

Query: 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIK 403
             I  LV  L S    +   A   L N+       K  +  +  L  ++ LL+ +     
Sbjct: 236 --IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 293

Query: 404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME 463
                 L  L              QE  + ++  G     ++++R+   E        + 
Sbjct: 294 AITTDCLQILAYGN----------QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343

Query: 464 LVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 502
            VL           +    G+ A+       ++ L    
Sbjct: 344 KVLSV--CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 380

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  150 bits (380), Expect = 2e-39
 Identities = 65/419 (15%), Positives = 133/419 (31%), Gaps = 34/419 (8%)

Query: 101 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160
            A+  L  LL   E   +     AG +  +V  L   +          CL  +A G QE 
Sbjct: 117 YAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKTNVKFLA-ITTDCLQILAYGNQES 174

Query: 161 TKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM 218
              +L       L+  +   +   +    +  L  ++      +  ++  G +  L   +
Sbjct: 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL 233

Query: 219 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV 278
                  V+   W L NL         T+   ++GLL  +++ L   D  + T  A ++ 
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAA-----TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288

Query: 279 YLSALSNVATSLLVKSGVLQLLVERL-ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 337
            L+  +     ++ + G ++ LV  +    +   +  P + +L +L +            
Sbjct: 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA- 347

Query: 338 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST 397
                   + V+VK L         +A   L    A    +   +    A+  L+ LL  
Sbjct: 348 --VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405

Query: 398 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS--------------LVGRGCLSGF 443
           +  D ++  +               + + I E                  + G   +  F
Sbjct: 406 AHQDTQRRTSMGGTQQQFV---EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462

Query: 444 IDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 502
           + L+ S      R+      ++     + E  + +E E     +       NE +   A
Sbjct: 463 VQLLYSPIENIQRVAA---GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 518

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  144 bits (364), Expect = 3e-37
 Identities = 55/300 (18%), Positives = 108/300 (36%), Gaps = 16/300 (5%)

Query: 122 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKS 179
           L   AIP L + L          +AA  +  ++  +      +     +  ++  +   +
Sbjct: 11  LATRAIPELTKLLNDEDQVVV-NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69

Query: 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239
               A   A  L N++    E    +   G +P L +M+     S +  A   L NL+  
Sbjct: 70  DVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 128

Query: 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 299
            +   A   +++ G L  ++  L + + +        +  L+  +  +  +++ SG  Q 
Sbjct: 129 QE--GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 186

Query: 300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359
           LV  + T    +LL    R L  L    S+  + V   G       +  L   L    + 
Sbjct: 187 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-------MQALGLHLTDPSQR 239

Query: 360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTE 419
           L +   W L N++       +       L  L+ LL +   ++    A +L NL  +  +
Sbjct: 240 LVQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 296

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  143 bits (362), Expect = 8e-37
 Identities = 59/359 (16%), Positives = 121/359 (33%), Gaps = 24/359 (6%)

Query: 99  RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 158
              A   + +L S+ E            +  +V+ +   +  E     A  L N++  ++
Sbjct: 31  VNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89

Query: 159 EETK-ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 217
                     +P L+  LG    S V       L N+    E  +  +   G L  +  +
Sbjct: 90  GLLAIFKSGGIPALVKMLGSPVDS-VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148

Query: 218 MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 277
           +       +      L  L  G        +I   G   A++  ++    E        V
Sbjct: 149 LNKTNVKFLAITTDCLQILAYGNQESKL--IILASGGPQALVNIMRTYTYEKLLWTTSRV 206

Query: 278 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 337
           + + ++ +     +V++G +Q L     T  S +L+   L +L NL    +         
Sbjct: 207 LKVLSVCSSNKPAIVEAGGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAATKQEGM---- 261

Query: 338 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-- 395
                + ++  LV+ L S+   +   AA +LSN+   + ++K ++     +  L+  +  
Sbjct: 262 -----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316

Query: 396 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 454
           +    DI +     L +L     E E     ++ H         L   + L+       
Sbjct: 317 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-------YGLPVVVKLLHPPSHWP 368

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  116 bits (291), Expect = 1e-27
 Identities = 50/274 (18%), Positives = 94/274 (34%), Gaps = 15/274 (5%)

Query: 167 ALPLLIAHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGS 224
           A+P L   L        V  + A  +  ++ +      ++ S   +  + R M   N   
Sbjct: 15  AIPELTKLL--NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 72

Query: 225 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS 284
           T R  A  L NL    +       I   G + A+++ L    + +       +  L    
Sbjct: 73  TARCTAGTLHNLSHHREGL---LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129

Query: 285 NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 344
             A   +  +G LQ +V  L    +++ L      L  L  G+  +   +L  G      
Sbjct: 130 EGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASG------ 182

Query: 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 404
               LV  +++            +  + +    +K  I  +  +  L   L+     + +
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242

Query: 405 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 438
              + L NL  + T+ EG   L+   LV L+G  
Sbjct: 243 NCLWTLRNLSDAATKQEGMEGLLG-TLVQLLGSD 275

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  109 bits (274), Expect = 2e-25
 Identities = 53/328 (16%), Positives = 98/328 (29%), Gaps = 41/328 (12%)

Query: 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSS 181
            G +  LVQ L     +     AA  L+N+     +    +     +  L+  +      
Sbjct: 262 EGLLGTLVQLLGSDDINVVT-CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320

Query: 182 P-VAEQCAWALGNVA---GEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI 237
             + E    AL ++     E E  +N +     LP + +++ P     +  A   L   +
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380

Query: 238 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS---------------- 281
                      ++  G +  +++ L RA ++     +                       
Sbjct: 381 ALCPAN--HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG 438

Query: 282 ALSNVATS-----LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 336
           AL  +A       ++     + L V+ L  S    +       L  L A D      +  
Sbjct: 439 ALHILARDVHNRIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEA 496

Query: 337 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 396
            G        A L + L S +  +   AA VL  ++    +  +   S E   L   L  
Sbjct: 497 EG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE---LTSSLFR 547

Query: 397 TSPFDIKKEVAYVLGNLCVSPTEGEGKP 424
           T P    +     L         G  + 
Sbjct: 548 TEPMAWNETADLGLDIGAQGEPLGYRQD 575

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  101 bits (253), Expect = 5e-23
 Identities = 49/301 (16%), Positives = 109/301 (36%), Gaps = 26/301 (8%)

Query: 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL 262
           +  L+  A+P L +++       V  AA  +  L K    +    +++   ++ AI+R +
Sbjct: 8   DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTM 65

Query: 263 KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN 322
           +  ++  T       ++  +        + KSG +  LV+ L +     +L   + +L N
Sbjct: 66  QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLHN 124

Query: 323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI 382
           L+         V + G       +  +V  L   +          L  +A G+ E K +I
Sbjct: 125 LLLHQEGAKMAVRLAG------GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178

Query: 383 HSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 441
            +S     L++++ + +   +    + VL  L V       KP +++         G + 
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVEA--------GGMQ 227

Query: 442 GFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNM 501
                +        +  L      LR + +   TK    E  +  + +    ++ ++   
Sbjct: 228 ALGLHLTDPSQRLVQNCLW----TLRNL-SDAATKQEGMEGLLGTLVQLLGSDDINVVTC 282

Query: 502 A 502
           A
Sbjct: 283 A 283

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 24/175 (13%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGIT 342
           L N      + +  +  L + L       ++      +  L   ++S  + +  P     
Sbjct: 2   LINYQDDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ---- 56

Query: 343 DQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD 401
             +++ +V+ +++       +  A  L N++    E    I  S  +  L+ +L +    
Sbjct: 57  --MVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDS 113

Query: 402 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 456
           +       L NL +     EG    ++         G L   + L+   +++   
Sbjct: 114 VLFYAITTLHNLLLH---QEGAKMAVRLA-------GGLQKMVALLNKTNVKFLA 158

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  131 bits (331), Expect = 3e-34
 Identities = 56/340 (16%), Positives = 108/340 (31%), Gaps = 32/340 (9%)

Query: 97  QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG 156
               + L  L ++ +  E            +      +      +    A   L  ++  
Sbjct: 4   HHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQIC-PAVCVLMKLS-- 60

Query: 157 KQEETKAL---LPALPLLIAHL----------GEKSSSPVAEQCAWALGNVAGEGEEFRN 203
             EE +     L  L  +   L           +  S  +      AL N+       + 
Sbjct: 61  FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120

Query: 204 VLLSQ-GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL 262
            L S  G +  L   +        +  A  L NL    D      L +V  +  A++   
Sbjct: 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV-KALMECA 179

Query: 263 KRA-DEELTTEVAWVVVYLSALS-NVATSLLVKSGVLQLLVERLATSNS------LQLLI 314
                E     V   +  LSA        +    G L  LV  L   +       ++   
Sbjct: 180 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239

Query: 315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 374
            +LR++ +L+A +      +        +  +  L++ LKS    +   A   L N++A 
Sbjct: 240 GILRNVSSLIATNEDHRQIL------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 293

Query: 375 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414
           + + ++ +    A+++L +L+ +    I    A  L NL 
Sbjct: 294 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  115 bits (290), Expect = 1e-28
 Identities = 61/314 (19%), Positives = 112/314 (35%), Gaps = 29/314 (9%)

Query: 158 QEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 217
            E  +A  P +     +                L  ++ + EE R+ +   G L  +A +
Sbjct: 24  WEWQEAHEPGMDQDK-NPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAEL 81

Query: 218 M-----------LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRAD 266
           +                +  R A  AL+NL  G D      L  + G + A++  LK   
Sbjct: 82  LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG-DVANKATLCSMKGCMRALVAQLKSES 140

Query: 267 EELTTEVAWVVVYLSALSNVAT-SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325
           E+L   +A V+  LS  ++V +   L + G ++ L+E          L  VL +L NL +
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL-S 199

Query: 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI---AAGSVEHKQLI 382
              +     +    G    ++  L    ++    + +    +L N+    A + +H+Q++
Sbjct: 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 259

Query: 383 HSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG 442
             +  L  LL  L +    I       L NL       + +  L           G +S 
Sbjct: 260 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR--NPKDQEALWDM--------GAVSM 309

Query: 443 FIDLVRSADIEAAR 456
             +L+ S     A 
Sbjct: 310 LKNLIHSKHKMIAM 323

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  114 bits (288), Expect = 2e-28
 Identities = 56/292 (19%), Positives = 108/292 (36%), Gaps = 33/292 (11%)

Query: 123 KAGAIPVLVQCLAFGSPDEQLL----------EAAWCLTNIAAGKQEETKALL---PALP 169
           + G +  + + L        L            A   LTN+  G       L      + 
Sbjct: 71  ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 130

Query: 170 LLIAHLGEKSSSPVAEQCAWALGNVA-GEGEEFRNVLLSQGALPPLARMML-PNKGSTVR 227
            L+A L  +S   + +  A  L N++       +  L   G++  L    L   K ST++
Sbjct: 131 ALVAQLKSESED-LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 189

Query: 228 TAAWALSNL-IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEV----AWVVVYLS- 281
           +   AL NL     + K    +  VDG L  ++  L    +  T  +      ++  +S 
Sbjct: 190 SVLSALWNLSAHCTENKAD--ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247

Query: 282 --ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH 339
             A +     +L ++  LQ L++    S+SL ++     +L NL A +      +   G 
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQ-HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG- 305

Query: 340 GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 391
                 +++L   + S+H+++   +A  L N+ A      +  +     + L
Sbjct: 306 -----AVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 69.1 bits (169), Expect = 6e-13
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 9/147 (6%)

Query: 101 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD---EQLLEAAWCLTNI---A 154
           + L  L  L +       +     GA+  LV  L + S       +      L N+    
Sbjct: 190 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249

Query: 155 AGKQEETKAL--LPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALP 212
           A  ++  + L     L  L+ HL +  S  +       L N++    + +  L   GA+ 
Sbjct: 250 ATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 308

Query: 213 PLARMMLPNKGSTVRTAAWALSNLIKG 239
            L  ++          +A AL NL+  
Sbjct: 309 MLKNLIHSKHKMIAMGSAAALRNLMAN 335

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  118 bits (298), Expect = 5e-31
 Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 291 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 350
                 L  +V++L  S   Q L   LR L  + +G +  I  V+  G       +  LV
Sbjct: 8   HHHGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAG------ALPALV 60

Query: 351 KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 410
           + L S +  + +EA W LSNIA+G  E  Q +  + AL  L+ LLS+    I +E  + L
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 411 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 470
            N+               E + +++  G L   + L+ S + +  +  L  +  +  G  
Sbjct: 121 SNIASGG----------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-- 168

Query: 471 NHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
            +E  + V+    ++ +E+ Q HENE ++  A   ++K  
Sbjct: 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  114 bits (287), Expect = 2e-29
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 17/201 (8%)

Query: 253 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 312
             L  +++ L   D++        +  +++  N     ++ +G L  LV+ L +S + Q+
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ-LLSSPNEQI 70

Query: 313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372
           L   L +L N+ +G +  I  V      I    +  LV+ L S +  + +EA W LSNIA
Sbjct: 71  LQEALWALSNIASGGNEQIQAV------IDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 373 AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV 432
           +G  E  Q +  + AL  L+ LLS+    I +E  + L N+      G  + + ++E   
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQKQAVKEA-- 179

Query: 433 SLVGRGCLSGFIDLVRSADIE 453
                G L     L    + +
Sbjct: 180 -----GALEKLEQLQSHENEK 195

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  111 bits (280), Expect = 2e-28
 Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 9/187 (4%)

Query: 99  RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAAGK 157
             +ALR+L ++ S      I+  + AGA+P LVQ L   SP+EQ+L+ A W L+NIA+G 
Sbjct: 29  LQSALRKLSQIASGGN-EQIQAVIDAGALPALVQLL--SSPNEQILQEALWALSNIASGG 85

Query: 158 QEETKALLPA--LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA 215
            E+ +A++ A  LP L+  L   +   + ++  WAL N+A  G E    ++  GALP L 
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALV 144

Query: 216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAW 275
           +++       ++ A WALSN+  G + +   + +K  G L+ + +     +E++  E   
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQLQSHENEKIQKEAQE 202

Query: 276 VVVYLSA 282
            +  L +
Sbjct: 203 ALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  104 bits (261), Expect = 6e-26
 Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 122 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKS 179
                +P +VQ L      ++L  A   L+ IA+G  E+ +A++   ALP L+  L   +
Sbjct: 9   HHGSELPQMVQQLNSPDQ-QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239
              + ++  WAL N+A  G E    ++  GALP L +++       ++ A WALSN+  G
Sbjct: 68  EQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 299
            + +   + +   G L A+++ L   +E++  E  W +  +++  N     + ++G L+ 
Sbjct: 127 GNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK 184

Query: 300 LVERLATSNSLQLLIPVLRSLGNLVA 325
           L + L +  + ++      +L  L +
Sbjct: 185 LEQ-LQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  103 bits (260), Expect = 9e-26
 Identities = 58/248 (23%), Positives = 93/248 (37%), Gaps = 52/248 (20%)

Query: 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 226
            LP ++  L         +     L  +A  G E    ++  GALP L +++       +
Sbjct: 13  ELPQMVQQLNS-PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 227 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 286
           + A WALSN+  G + +   + +   G L A+++ L   +E++  E  W           
Sbjct: 72  QEALWALSNIASGGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWA---------- 119

Query: 287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 346
                                            L N+ +G +  I  V+  G       +
Sbjct: 120 ---------------------------------LSNIASGGNEQIQAVIDAG------AL 140

Query: 347 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 406
             LV+ L S +  + +EA W LSNIA+G  E KQ +  + AL  L  L S     I+KE 
Sbjct: 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200

Query: 407 AYVLGNLC 414
              L  L 
Sbjct: 201 QEALEKLQ 208

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  122 bits (307), Expect = 2e-30
 Identities = 61/379 (16%), Positives = 123/379 (32%), Gaps = 33/379 (8%)

Query: 59  SSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKR-VNALRELRRLLSRFEFPP 117
            +D D ++       +   + A   L + +         +R +  L  L ++ +  E   
Sbjct: 81  GNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140

Query: 118 IETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL---LPALPLLIAH 174
                    +      +     + Q+  A   L  ++    EE +     L  L  +   
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPV-EHQICPAVCVLMKLS--FDEEHRHAMNELGGLQAIAEL 197

Query: 175 L----------GEKSSSPVAEQCAWALGNVA-GEGEEFRNVLLSQGALPPLARMMLPNKG 223
           L           +  S  +      AL N+  G+      +   +G +  L   +     
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257

Query: 224 STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSA 282
              +  A  L NL    D      L +V  +  A++        E     V   +  LSA
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSV-KALMECALEVKKESTLKSVLSALWNLSA 316

Query: 283 LS-NVATSLLVKSGVLQLLVERLATSNS------LQLLIPVLRSLGNLVAGDSSTISDVL 335
                   +    G L  LV  L   +       ++    +LR++ +L+A +      + 
Sbjct: 317 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 376

Query: 336 VPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 395
                     +  L++ LKS    +   A   L N++A + + ++ +    A+++L +L+
Sbjct: 377 ENN------CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 430

Query: 396 STSPFDIKKEVAYVLGNLC 414
            +    I    A  L NL 
Sbjct: 431 HSKHKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  116 bits (293), Expect = 2e-28
 Identities = 75/414 (18%), Positives = 145/414 (35%), Gaps = 68/414 (16%)

Query: 95  AMQKRVNALRELRRLLSRFEFPPIETAL-KAGAIPVLVQCLAFGSPDEQLLE-------- 145
               + +  R L  + S  +      ++ ++G +P+L+Q L     D  LL         
Sbjct: 42  GTHDKDDMSRTLLAMSSSQD---SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA 98

Query: 146 ---AAWCLTNIAAGKQEETKA-----LLPALPLLIAHLGEK------------------- 178
              A+  L NI   + ++ +      +L  L  + A+                       
Sbjct: 99  RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMP 158

Query: 179 -SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM-----------LPNKGSTV 226
                        L  ++ + EE R+ +   G L  +A ++                +  
Sbjct: 159 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR 217

Query: 227 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 286
           R A  AL+NL  G     A  L  + G + A++  LK   E+L   +A V+  LS  ++V
Sbjct: 218 RYAGMALTNLTFGDVANKA-TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 276

Query: 287 AT-SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV 345
            +   L + G ++ L+E          L  VL +L NL +   +     +    G    +
Sbjct: 277 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL-SAHCTENKADICAVDGALAFL 335

Query: 346 IAVLVKCLKSEHRVLKKEAAWVLSNI---AAGSVEHKQLIHSSEALALLLHLLSTSPFDI 402
           +  L    ++    + +    +L N+    A + +H+Q++  +  L  LL  L +    I
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395

Query: 403 KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 456
                  L NL     + +   + + +        G +S   +L+ S     A 
Sbjct: 396 VSNACGTLWNLSARNPKDQ---EALWDM-------GAVSMLKNLIHSKHKMIAM 439

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  110 bits (275), Expect = 4e-26
 Identities = 58/276 (21%), Positives = 103/276 (37%), Gaps = 33/276 (11%)

Query: 123 KAGAIPVLVQCLAFGSPDEQLL----------EAAWCLTNIAAGKQEETKALLP---ALP 169
           + G +  + + L        L            A   LTN+  G       L      + 
Sbjct: 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246

Query: 170 LLIAHLGEKSSSP-VAEQCAWALGNVA-GEGEEFRNVLLSQGALPPLARMML-PNKGSTV 226
            L+A L  KS S  + +  A  L N++       +  L   G++  L    L   K ST+
Sbjct: 247 ALVAQL--KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 227 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA-------WVVVY 279
           ++   AL NL        A ++  VDG L  ++  L    +  T  +          V  
Sbjct: 305 KSVLSALWNLSAHCTENKA-DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363

Query: 280 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH 339
           L A +     +L ++  LQ L++    S+SL ++     +L NL A +      +   G 
Sbjct: 364 LIATNEDHRQILRENNCLQTLLQ-HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG- 421

Query: 340 GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS 375
                 +++L   + S+H+++   +A  L N+ A  
Sbjct: 422 -----AVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  103 bits (256), Expect = 3e-23
 Identities = 63/420 (15%), Positives = 138/420 (32%), Gaps = 60/420 (14%)

Query: 108 RLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET------ 161
             L+       +      +I  L+     G+             N+    +++       
Sbjct: 404 AYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLY-GVVTTFVNLCNAYEKQEMLPEMI 462

Query: 162 ------KALLP----------------------ALPLLIAHLGEKSSSPVAEQCAWALGN 193
                 K  +P                          L A    +S +   E  A  L  
Sbjct: 463 ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHN-SQELIARVLNA 521

Query: 194 VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG 253
           V G  +E R  ++ +G +  L RM L       R A  AL+ +    +P+ +    +   
Sbjct: 522 VCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLD 580

Query: 254 LLDAILRHLKRADEEL-TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 312
           ++  +L  L++    L   E    +  L++++      ++K   +  +       + L L
Sbjct: 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEY-YLMEDHLYL 639

Query: 313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372
                + L NLV  +       ++      +  +  L    + E        A  L+ I 
Sbjct: 640 TRAAAQCLCNLVMSED------VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693

Query: 373 AGSVEHKQ-LIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHL 431
           + SV+  + ++  +  L +L  L++     ++     ++ N+  +    E   KL +  +
Sbjct: 694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA--GEEIAKKLFETDI 751

Query: 432 VSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQ 491
           + L+          L +  D   A+      E+  + +   E  +++ER D  +  + F 
Sbjct: 752 MELL--------SGLGQLPDDTRAKA----REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 89.1 bits (220), Expect = 8e-19
 Identities = 51/444 (11%), Positives = 132/444 (29%), Gaps = 57/444 (12%)

Query: 95  AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIA 154
                +        L++         AL    + +L +     +   ++  A   L  + 
Sbjct: 300 TTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVR-ALVGLCKLG 358

Query: 155 AGKQEETK-------ALLPALPLLIAHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLL 206
           +   ++         A L         L +      +    A  L  +  + E    ++ 
Sbjct: 359 SYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIE 418

Query: 207 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA--------------------- 245
            + ++  L  +      S +        NL    + +                       
Sbjct: 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHEL 478

Query: 246 ---------TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 296
                      ++  +G+  A+    K         +A V+  +  L  +    +V+ G 
Sbjct: 479 DDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELR-GKVVQEGG 537

Query: 297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE 356
           ++ L+  +A   + +      ++L  +      TI+  +      +  VI  L+  L+ +
Sbjct: 538 VKALLR-MALEGTEKGKRHATQALARI----GITINPEVSFSGQRSLDVIRPLLNLLQQD 592

Query: 357 -HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415
              +   E+   L+N+A+ +   +Q I   + ++ + + L      + +  A  L NL +
Sbjct: 593 CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652

Query: 416 SPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGT 475
           S    +        +         +     L    D E A      + ++          
Sbjct: 653 SE---DVIKMFEGNN-------DRVKFLALLCEDEDEETATACAGALAIITSVSVKCC-E 701

Query: 476 KLVEREDGIDAMERFQFHENEDLR 499
           K++     +D +     + +  ++
Sbjct: 702 KILAIASWLDILHTLIANPSPAVQ 725

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 81.4 bits (200), Expect = 2e-16
 Identities = 56/443 (12%), Positives = 121/443 (27%), Gaps = 51/443 (11%)

Query: 99  RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 158
              A   L R+     +   +          +   L     + ++      +T +  G  
Sbjct: 221 STIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKV-RVTVAITALLNGPL 279

Query: 159 EETKALLP---ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA 215
           +    ++     L +++A +               L   A   ++    L  QG +  L 
Sbjct: 280 DVGNQVVAREGILQMILA-MATTDDELQQRVACECLIA-ASSKKDKAKALCEQG-VDILK 336

Query: 216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA------DEEL 269
           R+           A   L  L        A      DG    +    +R       D+++
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIR-PFGDGAALKLAEACRRFLIKPGKDKDI 395

Query: 270 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS 329
               A  + YL+  +     L+     +  L++ LA   +   L  V+ +  NL      
Sbjct: 396 RRWAADGLAYLTLDAECKEKLIEDKASIHALMD-LARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 330 -----------TISDVLVPGHG---------------ITDQVIAVLVKCLKSEHRVLKKE 363
                        +   +P                    + +   L    K+E    ++ 
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQEL 514

Query: 364 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGK 423
            A VL+ +  G  E +  +     +  LL +        K+     L  + ++       
Sbjct: 515 IARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573

Query: 424 PKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDG 483
                  ++  +          L     + A         L      N    + + +E G
Sbjct: 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMA---------LTNLASMNESVRQRIIKEQG 624

Query: 484 IDAMERFQFHENEDLRNMANGLV 506
           +  +E +   ++  L   A   +
Sbjct: 625 VSKIEYYLMEDHLYLTRAAAQCL 647

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 95.4 bits (236), Expect = 6e-21
 Identities = 64/400 (16%), Positives = 128/400 (32%), Gaps = 23/400 (5%)

Query: 81  VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD 140
           + E   +  Y+     Q    +L  L  L       P     +   +P ++  L F    
Sbjct: 7   IGEEVPSDQYYWAPLAQHERGSLASLDSLRKG---GPPPPNWRQPELPEVIAMLGFRLDA 63

Query: 141 EQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVA-GE 197
            +   AA  L ++     +    +     +P+L+  L +     V      AL N++ G 
Sbjct: 64  VK-SNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGR 121

Query: 198 GEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 256
            ++ +  + +   +P L R++               L NL      K       +  L D
Sbjct: 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTD 181

Query: 257 AILRHLKRADEELTTEV-AWVVVYLSALSNVATSLLVKSGVLQ-LLVERLATSNSLQLLI 314
            ++      + E   +     + + S L+N A  L   S        +       +  LI
Sbjct: 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241

Query: 315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 374
            ++++       DS  + + +     ++ Q     V     +    ++ A  V +N    
Sbjct: 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQ-----VHREIPQAERYQEAAPNVANNTGTS 296

Query: 375 SVEHKQLIHSSEALALLLHLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS 433
                +L+   E + + + LL  S    I +  A  + NLC          + I+  L  
Sbjct: 297 PARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT---YGRYIRSALRQ 353

Query: 434 LVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHE 473
                 LS   DL+ +      +     +  +     N E
Sbjct: 354 ---EKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE 390

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 68.4 bits (166), Expect = 2e-12
 Identities = 52/346 (15%), Positives = 101/346 (29%), Gaps = 41/346 (11%)

Query: 99  RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 158
            + A   L+ +    +            +P LV+ L      +        L N+++   
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166

Query: 159 EETKALLPALPLLIAHL-----------------GEKSSSPVAEQCAWALGNVAGEGEEF 201
            + + +  AL  L   +                        V    A  L NV+ E  E 
Sbjct: 167 IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226

Query: 202 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH 261
           R  L     L      ++  +                  D K     + +   L   +  
Sbjct: 227 RRKLRECDGLVDALIFIVQAEIGQKD------------SDSKLVENCVCLLRNLSYQVHR 274

Query: 262 LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 321
                E        V             LL +  V+++ +  L  S +  +L     ++ 
Sbjct: 275 EIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQ 334

Query: 322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL 381
           NL AG  +      +      ++ ++ +   L +EH  + K A+  L N+A  +  +K+L
Sbjct: 335 NLCAGRWTY--GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-RNKEL 391

Query: 382 IHSSEALALLLHLLSTSP--------FDIKKEVAYVLGNLCVSPTE 419
           I    A+  L+  L             D    +   +  +     E
Sbjct: 392 I-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE 436

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 58.0 bits (139), Expect = 4e-09
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 11/183 (6%)

Query: 138 SPDEQLLEAAWCLTNIAAGKQEETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNV 194
              E+  EAA  + N           LL     + + I+ L E  +  + E  A A+ N+
Sbjct: 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNL 336

Query: 195 A----GEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 250
                  G   R+ L  + AL  +A ++       V+ A+ AL NL      K       
Sbjct: 337 CAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHA 396

Query: 251 VDGLLDAIL----RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT 306
           +  L+  +            E+    +   +  + A +  A   L ++  ++ LV    +
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKS 456

Query: 307 SNS 309
            N 
Sbjct: 457 GNR 459

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 88.7 bits (219), Expect = 5e-19
 Identities = 59/420 (14%), Positives = 127/420 (30%), Gaps = 45/420 (10%)

Query: 99  RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 158
           +      ++    + E    +   + G I  LV  L   + + Q   AA  L N+     
Sbjct: 19  QAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQ-QAAAGALRNLVFRST 76

Query: 159 EETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR 216
                      +   ++ L    ++ + +Q    L N++   E      L   ALP LA 
Sbjct: 77  TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE--LKEELIADALPVLAD 134

Query: 217 MML----------------PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 260
            ++                         A   L NL      +    +    GL+D+++ 
Sbjct: 135 RVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT--MRNYSGLIDSLMA 192

Query: 261 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI---PVL 317
           +++        +   V   +  L N++  L  +       +E  A +   +         
Sbjct: 193 YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN 252

Query: 318 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL-----KSEHRVLKKEAAWVLSNIA 372
           +S   +       + +      G      +  ++       KS+     +  A  L N+ 
Sbjct: 253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312

Query: 373 AG-----SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI 427
           A      S   + +    + L  +  LL +   D+ +  A +L N+   P       +++
Sbjct: 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP----LLHRVM 368

Query: 428 QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM 487
              +   V R   S   +   S DI ++        +        +  K       ++ +
Sbjct: 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYT----VRNLMASQPQLAKQYFSSSMLNNI 424

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 84.1 bits (207), Expect = 2e-17
 Identities = 53/354 (14%), Positives = 108/354 (30%), Gaps = 32/354 (9%)

Query: 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL--LPALPLLIAHLGEKSSSPVA 184
           IP  VQ L+      Q    A+ + +     +   + +  L  +  L+  L    +  V 
Sbjct: 4   IPKAVQYLSSQDEKYQA-IGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQ 61

Query: 185 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV-RTAAWALSNLIKGPDPK 243
           +  A AL N+       +     Q  +     ++     + + +     L NL    + K
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 244 PATE-----------LIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLL 291
                          +I   G  D      +   D E+       +  LS+      ++ 
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 292 VKSGVLQLLVERLATSN--------SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD 343
             SG++  L+  +            S++  + VL +L   +  +  T    L        
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIK 403
              +          +++       L      + +    ++ S+A+   L+L+  S  D  
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEE-ETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 404 KE-VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 456
            E  A  L NL  S               +  +    L     L++S + +  R
Sbjct: 301 LEACAGALQNLTAS-----KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVR 349

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 69.5 bits (169), Expect = 9e-13
 Identities = 50/363 (13%), Positives = 115/363 (31%), Gaps = 33/363 (9%)

Query: 166 PALPLLIAHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS 224
             +P  + +L   S         A+ + +   + E  +  +   G +  L  ++     +
Sbjct: 2   LTIPKAVQYL--SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQN 59

Query: 225 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS--- 281
             + AA AL NL+         E  + +G+ +A+    +  + E+  ++  ++  LS   
Sbjct: 60  VQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 282 ---------ALSNVATSLLV-KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 331
                    AL  +A  +++  SG               ++       L NL + D+   
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 332 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 391
           +     G      +I  L+  +++     + +   V + +        +L          
Sbjct: 179 TMRNYSG------LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232

Query: 392 LHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ-----EHLVSLVGRGCLSGFIDL 446
           L   + +    +K       N             L +     +    L     +  +++L
Sbjct: 233 LEYNARNA-YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291

Query: 447 VRSAD----IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 502
           +  +     +EA    LQ +      M +     +  +E G+  + R     N D+    
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351

Query: 503 NGL 505
             L
Sbjct: 352 ASL 354

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 66.0 bits (160), Expect = 9e-12
 Identities = 56/390 (14%), Positives = 116/390 (29%), Gaps = 55/390 (14%)

Query: 66  VDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAG 125
                + LE +  + + E  S +   G   +QK       L  L S  E       L A 
Sbjct: 73  FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQK--QLTGLLWNLSSTDELKE---ELIAD 127

Query: 126 AIPVLVQCL--------------AFGSPDEQLLE-AAWCLTNIAAGKQE-----ETKALL 165
           A+PVL   +              +    D ++   A  CL N+++             L+
Sbjct: 128 ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLI 187

Query: 166 PALPLLIAH--LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG 223
            +L   + +     +      E C   L N++   +        Q            +  
Sbjct: 188 DSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSST 247

Query: 224 STVRTAAWALSN------LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 277
                 +  + N      L +       +  +     +   L  + ++ ++ T E     
Sbjct: 248 GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGA 307

Query: 278 VYLSALSN------VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 331
           +     S       ++  + +K   L  +   L  S +  ++      L N+        
Sbjct: 308 LQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPLLHR 366

Query: 332 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKK------EAAWVLSNIAAGSVEHKQLIHSS 385
                    + +QV   + + L S              A + + N+ A   +  +   SS
Sbjct: 367 V--------MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS 418

Query: 386 EALALLLHLLSTSPFDIKKEVA-YVLGNLC 414
             L  +++L  +S      E A  +L ++ 
Sbjct: 419 SMLNNIINLCRSSASPKAAEAARLLLSDMW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 39/282 (13%), Positives = 82/282 (29%), Gaps = 36/282 (12%)

Query: 124 AGAIPVLVQCLAFGSPDEQ-----LLEAAWCLTNIAAGKQEETKALLPALPLL------- 171
           +G I  L+  +       +     +      L N++     E       L          
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 172 ---IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRT 228
                    KS   +       L       +    +  S      L  M    K +T+  
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 229 AAWALSNLIKGPDPKPATE---LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 285
            A AL NL        +     +   +  L  I R L+  + ++    A ++  +S   +
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RH 361

Query: 286 VATSLLVKSGVLQLLVERLATSN-----SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG 340
                ++ + V   +   L +       S  +L     ++ NL+A               
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS-- 419

Query: 341 ITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNIAAGSVEHKQL 381
               ++  ++   +S       + A  +LS++ +     K+L
Sbjct: 420 ----MLNNIINLCRSSASPKAAEAARLLLSDMWS----SKEL 453

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 82.8 bits (204), Expect = 1e-17
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 190 ALGNVAGEGEEFRNVL--LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 247
            +    GE E+ ++ L  LSQ   P                A   L++L +  D   A +
Sbjct: 19  HMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN--AAD 76

Query: 248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS 307
             ++ G+   + R+L+     L    A ++   S         ++  G L+ L+  L   
Sbjct: 77  FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD 136

Query: 308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV 367
               + +  L ++  LV    + +   L           +VL++ ++ + + LK ++A++
Sbjct: 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLD------GFSVLMRAMQQQVQKLKVKSAFL 190

Query: 368 LSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414
           L N+  G  EHK  + S   +  L+ L+ T      + V   L +L 
Sbjct: 191 LQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 78.1 bits (192), Expect = 4e-16
 Identities = 38/251 (15%), Positives = 72/251 (28%), Gaps = 14/251 (5%)

Query: 67  DEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETA---LK 123
            E + +       +     +A         Q+R  AL  L  L        ++ A    +
Sbjct: 25  GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-----NMDNAADFCQ 79

Query: 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSS 181
              + +LV              AA  +   +       + +L   AL  L+  L   +  
Sbjct: 80  LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD 139

Query: 182 PVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241
            V  +  +A+  +  E E      L       L R M          +A+ L NL+ G  
Sbjct: 140 TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP 199

Query: 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV--LQL 299
               T  +   G++  ++  ++         V   +  L            +  +   +L
Sbjct: 200 EHKGT--LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEEL 257

Query: 300 LVERLATSNSL 310
           L  R       
Sbjct: 258 LRHRCQLLQQH 268

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 63.9 bits (155), Expect = 2e-11
 Identities = 34/229 (14%), Positives = 73/229 (31%), Gaps = 24/229 (10%)

Query: 291 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 350
             +   + LLV R   + +  L     + +G      ++    VL  G       +  L+
Sbjct: 77  FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG------ALRKLL 130

Query: 351 KCLKSEHRV-LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV 409
           + L  +    ++ +A + +S +              +  ++L+  +      +K + A++
Sbjct: 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFL 190

Query: 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469
           L NL V             EH  +L   G +   + LVR+         L  +  ++   
Sbjct: 191 LQNLLVGHP----------EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240

Query: 470 PN------HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 512
           P            L E       + +    E ++       L+   F  
Sbjct: 241 PQGVRECREPELGLEELLRHRCQLLQQH-EEYQEELEFCEKLLQTCFSS 288

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 70.0 bits (171), Expect = 9e-14
 Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 20/202 (9%)

Query: 124 AGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKAL--LPALPLLIAHLGEKSS 180
              +   V  L         +  AA  + +    K E  K +  L  +  L+  L  K  
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL--KVQ 64

Query: 181 SP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV-RTAAWALSNLIK 238
           +  V      AL N+  E  + +  +     +P L +++   +     +     L NL  
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 239 GPDPKPATELIKVDGLLDAIL------------RHLKRADEELTTEVAWVVVYLSALSNV 286
               K       +  L + I+            +     D ++   V   +  +S+    
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184

Query: 287 ATSLLVK-SGVLQLLVERLATS 307
               + +  G++  LV  +  +
Sbjct: 185 GRKAMRRCDGLIDSLVHYVRGT 206

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 28/231 (12%)

Query: 73  LEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQ 132
           +EM    AV  L++           +   A   ++      +    +   +   I  L+Q
Sbjct: 6   MEMTLERAVSMLEA-----DHMLPSRISAAATFIQ-HECFQKSEARKRVNQLRGILKLLQ 59

Query: 133 CLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWA 190
            L   + D Q       L N+     +    +     +P L+  L +       +Q    
Sbjct: 60  LLKVQNEDVQ-RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGL 118

Query: 191 LGNVAGEGEEFRNVLLSQGALPPLARMMLP----------------NKGSTVRTAAWALS 234
           L N++   +     L+   AL  L   ++                             L 
Sbjct: 119 LWNLSSNDK--LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLR 176

Query: 235 NLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 285
           N+           + + DGL+D+++ +++    +   +       +  L N
Sbjct: 177 NMSSAGADGR-KAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 11/141 (7%)

Query: 297 LQLLVERL-ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS 355
           L+  V  L A       +      + +     S     V         + I  L++ LK 
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRV------NQLRGILKLLQLLKV 63

Query: 356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP-FDIKKEVAYVLGNLC 414
           ++  +++     L N+     ++K  +     +  LL +L  +   + KK++  +L NL 
Sbjct: 64  QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123

Query: 415 VSPTEGEGKPKLIQEHLVSLV 435
            +    + K  +I E L++L 
Sbjct: 124 SND---KLKNLMITEALLTLT 141

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 28/252 (11%), Positives = 79/252 (31%), Gaps = 38/252 (15%)

Query: 166 PALPLLIAHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS 224
             L   ++ L      P      A  + +   +  E R  +     +  L +++      
Sbjct: 8   MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67

Query: 225 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS 284
             R    AL NL+   +       +     +  +L+ LK+  +  T +    +++  + +
Sbjct: 68  VQRAVCGALRNLVFEDNDN--KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 285 NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 344
           +   +L++   +L L                                 ++++P  G  + 
Sbjct: 126 DKLKNLMITEALLTL-------------------------------TENIIIPFSGWPE- 153

Query: 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSE-ALALLLHLLSTSPFDIK 403
                 K        +       L N+++   + ++ +   +  +  L+H +  +  D +
Sbjct: 154 --GDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211

Query: 404 KEVAYVLGNLCV 415
            +       +C+
Sbjct: 212 PDDKATENCVCI 223

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 22/137 (16%)

Query: 122 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHL------ 175
            +   +P L+Q L      E   +    L N+++  + +   +  AL  L  ++      
Sbjct: 91  AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSG 150

Query: 176 ---------GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS-QGALPPLARMMLPNKGS- 224
                           +       L N++  G + R  +    G +  L   +       
Sbjct: 151 WPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADY 210

Query: 225 -----TVRTAAWALSNL 236
                        L NL
Sbjct: 211 QPDDKATENCVCILHNL 227

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 81/489 (16%), Positives = 147/489 (30%), Gaps = 160/489 (32%)

Query: 105 ELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET--- 161
             + +LS+ E   I               +         L   W L +    KQEE    
Sbjct: 41  MPKSILSKEEIDHI---------------IMSKDAVSGTLRLFWTLLS----KQEEMVQK 81

Query: 162 ---KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM 218
              + L      L++ +  +   P      +          E R+ L +       A+  
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMY---------IEQRDRLYNDN--QVFAKYN 130

Query: 219 LP--NKGSTVRTAAWALSNLIKGPDPKPATELIKVDG--------LLDAILRHLKRADEE 268
           +        +R A   L  L      +PA  ++ +DG        +   +    K    +
Sbjct: 131 VSRLQPYLKLRQA---LLEL------RPAKNVL-IDGVLGSGKTWVALDVCLSYKV-QCK 179

Query: 269 LTTEVAWVVVYLSALSNVATSLLVKSGVLQLL--------VERLATSNSLQLLIPVLRS- 319
           +  ++ W+ +      N   ++L     LQ L          R   S++++L I  +++ 
Sbjct: 180 MDFKIFWLNL---KNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 320 LGNLVAGDSSTISDVLVPGHGITDQV-----I-AVLVKCLKSEHRVL----KKEAAWVLS 369
           L  L+   S    + L+    +   V       A  + C     ++L     K+   V  
Sbjct: 234 LRRLLK--SKPYENCLL----VLLNVQNAKAWNAFNLSC-----KILLTTRFKQ---VTD 279

Query: 370 NIAAGSVEHKQLIHSS------EALALLLHLLSTSPFDIKKEVAYVLGNLCVSP------ 417
            ++A +  H  L H S      E  +LLL  L   P D+ +EV      L  +P      
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV------LTTNPRRLSII 333

Query: 418 ----------------TEGEGKPKLIQ---EHLVSLVGRGCLSGFIDLV---RSADIEAA 455
                              +    +I+     L     R     F  L     SA I   
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---FDRLSVFPPSAHIPTI 390

Query: 456 RLGL-------QFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH--------ENEDLRN 500
            L L         + +V+  +  +    LVE++                    + E+   
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQ---PKESTISIPSIYLELKVKLENEYA 444

Query: 501 MANGLVDKY 509
           +   +VD Y
Sbjct: 445 LHRSIVDHY 453

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 7e-09
 Identities = 68/490 (13%), Positives = 145/490 (29%), Gaps = 140/490 (28%)

Query: 62  SDMMVDEEQSILEMQTSSAVEELKSA--VAYHGKGAMQKRVNALRELR--RLLSRFEFPP 117
           +   V   Q  L+++   A+ EL+ A  V   G     K   AL      ++  + +F  
Sbjct: 127 AKYNVSRLQPYLKLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK- 183

Query: 118 IETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGE 177
                             F           W    +        + +L  L  L+  +  
Sbjct: 184 -----------------IF-----------W----LNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 178 KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-------P------NKGS 224
             +S           N+       +  L       P    +L              N   
Sbjct: 212 NWTSRSDHSS-----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 225 T--VRTAAWALSNLIKGPDPKPATELIKVDGL-----LDAILRHLKRADEELTTEVAWVV 277
              + T    +++ +        +       L        +L++L    ++L  EV  + 
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LT 324

Query: 278 VYLSALSNVATSLLVKSGV------LQLLVERLAT--SNSLQLLIPV-LRSLGNLVAGDS 328
                LS +A S+  + G+        +  ++L T   +SL +L P   R + + ++   
Sbjct: 325 TNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--- 379

Query: 329 STI--SDVLVP--------GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 378
             +      +P           I   V+ V+ K  K    +++K+             E 
Sbjct: 380 --VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPK-----------ES 424

Query: 379 KQLIHSSEALALLLHLLSTSPFDIKKEV------AYVLGNLCVSPTEGEGKPKL------ 426
              I S       ++L      + +  +       Y +       ++    P L      
Sbjct: 425 TISIPS-------IYLELKVKLENEYALHRSIVDHYNI--PKTFDSDDLIPPYLDQYFYS 475

Query: 427 -IQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID 485
            I  HL ++     ++ F  +          L  +F+E  +R    H+ T        ++
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVF---------LDFRFLEQKIR----HDSTAWNASGSILN 522

Query: 486 AMERFQFHEN 495
            +++ +F++ 
Sbjct: 523 TLQQLKFYKP 532

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 38/271 (14%), Positives = 90/271 (33%), Gaps = 26/271 (9%)

Query: 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML---PNKG 223
            +  L   +   S +   +Q    + N+    + F   L  QGA+  +   +        
Sbjct: 458 LISFLKREMHNLSPN-CKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGE 515

Query: 224 STVRTAAWALSNLIKGPDPKPATE----------LIKVDGLLDAILRHLKRADEELTT-- 271
                   AL+ ++   +P    +          L ++      +  +    DE++    
Sbjct: 516 PIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD 575

Query: 272 --EVAWVVVYLSALSNVATSLLVKSGVLQL----LVERLATSNSLQLLIPVLRSLGNLVA 325
             E    +  L++        + K  V        +E L    ++ L    L  + N+++
Sbjct: 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635

Query: 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH-KQLIHS 384
              +  +      +  + +   +LVK L+      ++  A + +NIA       K+L+  
Sbjct: 636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695

Query: 385 SEALALLLHLLSTSPFDIKKE--VAYVLGNL 413
            E +   + + +    DI+    +  +   L
Sbjct: 696 KELIENAIQVFADQIDDIELRQRLLMLFFGL 726

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 49/350 (14%), Positives = 106/350 (30%), Gaps = 41/350 (11%)

Query: 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQ 186
           IP  +Q     SP  +   A  C+          T+AL+  +   I +L   +     E 
Sbjct: 176 IPKFLQFFKHSSPKIRSH-AVACVNQFI---ISRTQALMLHIDSFIENLFALAGDEEPEV 231

Query: 187 CAWALGNVAGEGEEFRNVLLSQGALPPLARMML---PNKGSTVRTAAWALSNLIKGPDPK 243
                  +    E   + LL    +  +   ML    ++   V   A      +      
Sbjct: 232 RKNVCRALVMLLEVRMDRLLPH--MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289

Query: 244 PATELIKVDGLLDAILRHLKRADEELTTEVAWVV--------VYLSALSNVATSLL---- 291
               +  +  L+  ++  +K +D ++      V         +    L   + + L    
Sbjct: 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349

Query: 292 --VKSGVLQLL---VERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 346
              +  +L  +   ++ L   +   +    +  LG +  G    +   L        ++I
Sbjct: 350 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-------PELI 402

Query: 347 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 406
             L++CL  +  +++    W LS  A   V      +    +  LL  +  S   +++  
Sbjct: 403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAA 462

Query: 407 AYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR--GCLSGFIDLVRSADIEA 454
                 L       E     +  +L  ++       S +         +A
Sbjct: 463 CSAFATLE------EEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 506

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 45/247 (18%), Positives = 79/247 (31%), Gaps = 65/247 (26%)

Query: 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 226
            + + I +L +  S  V    A+ALG +  E            A+ PL + +        
Sbjct: 20  KVEMYIKNLQD-DSYYVRRAAAYALGKIGDER-----------AVEPLIKALKDEDAWVR 67

Query: 227 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 286
           R AA AL               I  +  ++ +++ LK  D  +    A       AL  +
Sbjct: 68  RAAADALGQ-------------IGDERAVEPLIKALKDEDGWVRQSAAV------ALGQI 108

Query: 287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 346
                     ++ L++ L   +   + I    +LG +  GD               ++ +
Sbjct: 109 GDE-----RAVEPLIKALKDEDW-FVRIAAAFALGEI--GD---------------ERAV 145

Query: 347 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 406
             L+K LK E   +++ AA  L  I                 A +  L  T     +K  
Sbjct: 146 EPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVA 194

Query: 407 AYVLGNL 413
              L   
Sbjct: 195 VNYLETH 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 45/247 (18%), Positives = 79/247 (31%), Gaps = 65/247 (26%)

Query: 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 226
            + + I +L +  S  V    A+ALG +  E            A+ PL + +        
Sbjct: 15  KVEMYIKNLQD-DSYYVRRAAAYALGKIGDER-----------AVEPLIKALKDEDAWVR 62

Query: 227 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 286
           R AA AL               I  +  ++ +++ LK  D  +    A       AL  +
Sbjct: 63  RAAADALGQ-------------IGDERAVEPLIKALKDEDGWVRQSAAV------ALGQI 103

Query: 287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 346
                     ++ L++ L   +   + I    +LG +  GD               ++ +
Sbjct: 104 GDE-----RAVEPLIKALKDEDW-FVRIAAAFALGEI--GD---------------ERAV 140

Query: 347 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 406
             L+K LK E   +++ AA  L             I      A +  L  T     +K  
Sbjct: 141 EPLIKALKDEDGWVRQSAADALGE-----------IGGERVRAAMEKLAETGTGFARKVA 189

Query: 407 AYVLGNL 413
              L   
Sbjct: 190 VNYLETH 196

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 29/270 (10%), Positives = 67/270 (24%), Gaps = 60/270 (22%)

Query: 145 EAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV 204
           +A+         K+     L   L        +  +S      A  L    G+       
Sbjct: 9   KASKEYGLYNQCKKLNDDELFRLL--------DDHNSLKRISSARVLQLRGGQ------- 53

Query: 205 LLSQGALPPLARMMLPNKGSTVR-TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK 263
                A+         +K    R   A+ L  +      +        + L +  L    
Sbjct: 54  ----DAVRLAIE-FCSDKNYIRRDIGAFILGQIKICKKCEDNV----FNILNNMALND-- 102

Query: 264 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 323
                +            + +       + S  +    +  A   S  +      ++  +
Sbjct: 103 -KSACVRATAIE------STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155

Query: 324 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIH 383
              D                  I +L+  LK  +  ++  AA+ ++              
Sbjct: 156 --ND---------------KATIPLLINLLKDPNGDVRNWAAFAININKYD--------- 189

Query: 384 SSEALALLLHLLSTSPFDIKKEVAYVLGNL 413
           +S+     + +L     +++ E    L   
Sbjct: 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 38/271 (14%), Positives = 85/271 (31%), Gaps = 36/271 (13%)

Query: 103 LRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAW-CLTNIAAGKQEET 161
           +RE        E   I        +  L++ L        +++ A   +  IA   +   
Sbjct: 10  IREALANGEHLEKILIMAKYDESVLKKLIELL--DDDLWTVVKNAISIIMVIA---KTRE 64

Query: 162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN 221
               P L  L + L +  + P+ ++ A A G +A E  E     L +  +P L       
Sbjct: 65  DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE-----LVKSMIPVLFANYRIG 119

Query: 222 KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 281
              T    ++AL  + K            +  ++   +  L   + E           + 
Sbjct: 120 DEKTKINVSYALEEIAKANPM-------LMASIVRDFMSMLSSKNREDKLTALNF---IE 169

Query: 282 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGI 341
           A+   +   +  +  L  ++  L   +   +    + +L +L   +              
Sbjct: 170 AMGENSFKYV--NPFLPRIINLLHDGDE-IVRASAVEALVHLATLNDKLR---------- 216

Query: 342 TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372
             +V+   ++ L     ++ K     +S + 
Sbjct: 217 --KVVIKRLEELNDTSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 40.1 bits (93), Expect = 9e-04
 Identities = 30/247 (12%), Positives = 85/247 (34%), Gaps = 35/247 (14%)

Query: 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 226
            L  LI  L +   + V +     +  +A   E+     L +  L  L  ++  ++   +
Sbjct: 33  VLKKLIELLDDDLWT-VVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKSEAIPL 86

Query: 227 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 286
                     +    P+       V  ++  +  + +  DE+    V++ +  ++  + +
Sbjct: 87  TQEIAKAFGQMAKEKPE------LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 346
             + +V+          + +S + +  +  L  +  +       ++  L           
Sbjct: 141 LMASIVRD------FMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL----------- 183

Query: 347 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 406
             ++  L     +++  A   L ++A  + + ++++     +  L  L  TS   + K V
Sbjct: 184 PRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV-----IKRLEELNDTSSL-VNKTV 237

Query: 407 AYVLGNL 413
              +  L
Sbjct: 238 KEGISRL 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	518
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.87
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.85
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.73
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.72
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.7
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.69
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.68
3grl_A	651	General vesicular transport factor P115; vesicle t	99.68
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.67
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.67
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.66
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.58
3grl_A	651	General vesicular transport factor P115; vesicle t	99.56
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.54
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.5
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.49
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.49
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.48
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.47
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.46
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.46
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.44
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.41
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.41
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.39
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.26
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.18
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.11
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.11
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.91
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.91
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.79
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.74
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.72
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.59
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.54
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.51
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.49
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.49
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.38
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.37
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.33
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.33
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.29
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.18
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.13
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.06
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.06
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.02
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.96
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.87
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.84
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.82
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.74
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.72
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.62
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.62
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.58
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.52
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.5
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.36
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.01
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.91
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.89
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.88
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.82
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.73
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.48
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.37
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.28
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.17
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.45
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	95.41
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.3
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.16
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.03
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.96
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.74
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	93.83
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.42
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	93.04
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.0
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	92.89
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	92.88
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	92.45
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	90.55
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	90.35
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	89.83
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	89.61
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	89.59
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	87.67
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	87.62
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	87.49
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	87.0
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	85.52
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	80.1

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.6e-78  Score=643.12  Aligned_cols=485  Identities=28%  Similarity=0.484  Sum_probs=385.8

Q ss_pred             CccCcccccccccccCc-hH-HhhhHHHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHHhhhHHHH
Q 010080            4 DSLNHHKRDPIKSSVGN-VA-AQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAV   81 (518)
Q Consensus         4 ~~~~~~r~~~~k~~~~~-~~-~~rr~~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (518)
                      .+.|++|+++||++|.+ ++ ||||++++|+|||+||||+|.|||+.  ...+++..++..+.     . ......... 
T Consensus         7 ~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~--~~~~~~~~~~~~~~-----~-~~~~~~~~~-   77 (529)
T 3tpo_A            7 ANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNV--SSFPDDATSPLQEN-----R-NNQGTVNWS-   77 (529)
T ss_dssp             -------------------------------------CCSCSCCCCC--C---------------------CGGGSSCC-
T ss_pred             CCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCC--CCCcccccChhhhc-----c-chhhhHHHH-
Confidence            46789999999987754 34 55556799999999999999888853  22222222211110     0 001111222 


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                        +..++++++|+|++.++.|+..+|++||.+++||++.++++|+||.||++|...+++.+|++|+|+|+|||+++++++
T Consensus        78 --l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           78 --VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             --HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             --HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence              444555667999999999999999999999999999999999999999999877778899999999999999999999


Q ss_pred             HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC-----hhHHHHHHHHHH
Q 010080          162 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-----GSTVRTAAWALS  234 (518)
Q Consensus       162 ~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~  234 (518)
                      ..++  |+||.|+.+|.+ ++.+++++|+|+|+||+++++++|+.++..|++++|+.++..++     ..++++++|+|+
T Consensus       156 ~~vv~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~  234 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  234 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence            9988  799999999988 78999999999999999999999999999999999999998653     457899999999


Q ss_pred             HhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchh
Q 010080          235 NLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI  314 (518)
Q Consensus       235 nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~  314 (518)
                      |+|+++.+.....  ...+++|.|++++.+++++++.++||+|+|++.++++..+.+++.|+++.|+.+| .+++..++.
T Consensus       235 nl~~~~~~~~~~~--~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~  311 (529)
T 3tpo_A          235 NLCRNKNPAPPLD--AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVT  311 (529)
T ss_dssp             HHHCCCTTCCCHH--HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHH
T ss_pred             HHHhcccchhhHH--HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHH
Confidence            9999876554433  3569999999999999999999999999999998888899999999999999999 588899999


Q ss_pred             hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080          315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  394 (518)
Q Consensus       315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l  394 (518)
                      +++++|+|++++++.++..+++.      |+++.|+.+|.++++.++++|||+|+||+++++.+++.+++.|++|.|+.+
T Consensus       312 ~a~~aL~nl~~~~~~~~~~i~~~------g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~l  385 (529)
T 3tpo_A          312 PALRAIGNIVTGTDEQTQKVIDA------GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV  385 (529)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHT------TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHhhc------ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHH
Confidence            99999999999999888888865      599999999999999999999999999999999999999999999999999


Q ss_pred             hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC---
Q 010080          395 LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN---  471 (518)
Q Consensus       395 L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~---  471 (518)
                      |.+++++++++|+|+|+|++.+.     +    .+++.+|++.|+|++|+++|.++|++++..+|++|.+|++.++.   
T Consensus       386 L~~~~~~v~~~A~~aL~nl~~~~-----~----~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~  456 (529)
T 3tpo_A          386 LSKADFKTQKAAAWAITNYTSGG-----T----VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE  456 (529)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHS-----C----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCC-----C----HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccC
Confidence            99999999999999999998752     3    47889999999999999999999999999999999999976432   


Q ss_pred             -CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCCCC
Q 010080          472 -HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE  518 (518)
Q Consensus       472 -~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~~~  518 (518)
                       +.+..+|+++||+++|+.||+|+|++||++|..||++||++++++|+
T Consensus       457 ~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~  504 (529)
T 3tpo_A          457 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQ  504 (529)
T ss_dssp             HHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--------
T ss_pred             hHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccc
Confidence             24567899999999999999999999999999999999998776653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=4.4e-68  Score=560.14  Aligned_cols=419  Identities=30%  Similarity=0.544  Sum_probs=377.6

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010080           78 SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK  157 (518)
Q Consensus        78 ~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~  157 (518)
                      .+.++++++.   ++|+|++.|+.|+..+|++||.+++||++.++++|+||.||++|+..+++.+|++|+|+|+|||+++
T Consensus        56 ~~~i~~~v~~---l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~  132 (510)
T 3ul1_B           56 NWSVEDIVKG---INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT  132 (510)
T ss_dssp             SCCHHHHHHH---HTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred             hhhHHHHHHH---hcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence            3445666554   4699999999999999999999999999999999999999999987777889999999999999999


Q ss_pred             hHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC-----hhHHHHHH
Q 010080          158 QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-----GSTVRTAA  230 (518)
Q Consensus       158 ~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~  230 (518)
                      +++++.++  |+||.|+.+|.+ ++.+++++|+|+|+||+++++++|+.+.+.|++++|+.++..++     ..++++++
T Consensus       133 ~e~~~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~  211 (510)
T 3ul1_B          133 SEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  211 (510)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence            99999998  799999999988 78999999999999999999999999999999999999998653     45789999


Q ss_pred             HHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCc
Q 010080          231 WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL  310 (518)
Q Consensus       231 ~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~  310 (518)
                      |+++|+|+++.+....  ....+++|.|++++.+++++++..+||+|++|+.++++..+.+.+.|+++.|+.+| .+++.
T Consensus       212 ~~L~nl~~~~~~~~~~--~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~  288 (510)
T 3ul1_B          212 WTLSNLCRNKNPAPPL--DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATEL  288 (510)
T ss_dssp             HHHHHHHCCCSSCCCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCH
T ss_pred             HHHHHHhhcccchhHH--HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCCh
Confidence            9999999987655443  33569999999999999999999999999999998888889999999999999999 58889


Q ss_pred             cchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHH
Q 010080          311 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL  390 (518)
Q Consensus       311 ~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~  390 (518)
                      .++.+++++|+|++++++.++..+++.      |+++.|+.+|.++++.++++|+|+|+||+++++.+++.+++.|++|.
T Consensus       289 ~v~~~al~aL~nl~~~~~~~~~~i~~~------g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~  362 (510)
T 3ul1_B          289 PIVTPALRAIGNIVTGTDEQTQKVIDA------GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF  362 (510)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHT------TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred             hhhhHHHHHHHHhhcCCHHHHHHHhhc------cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHH
Confidence            999999999999999999998888865      59999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080          391 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       391 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~  470 (518)
                      |+.+|.++++++|++|+|+|+|++.+.     +    .+++.+|++.|++++|+++|.++|++++..+|++|.+|++.++
T Consensus       363 Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~-----~----~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~  433 (510)
T 3ul1_B          363 LVGVLSKADFKTQKEAAWAITNYTSGG-----T----VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE  433 (510)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHC-----C----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHccC-----C----HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999998752     3    4788999999999999999999999999999999999998653


Q ss_pred             C----CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCCCC
Q 010080          471 N----HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE  518 (518)
Q Consensus       471 ~----~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~~~  518 (518)
                      .    +.++.+|+++||+++|+.||+|+|++||++|..||++||++++++|+
T Consensus       434 ~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~  485 (510)
T 3ul1_B          434 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQ  485 (510)
T ss_dssp             TTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-------
T ss_pred             hccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccc
Confidence            2    24567899999999999999999999999999999999998877653

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1e-63  Score=530.25  Aligned_cols=480  Identities=32%  Similarity=0.525  Sum_probs=378.5

Q ss_pred             ccCcccccccccccCchH-HhhhHHHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHH
Q 010080            5 SLNHHKRDPIKSSVGNVA-AQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE   83 (518)
Q Consensus         5 ~~~~~r~~~~k~~~~~~~-~~rr~~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (518)
                      .++++|+++||++.+.++ ||||++..++|||+|||++|.|||+.  ....++..++  .    ..     .......+.
T Consensus         9 ~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~--~~~~~~~~~~--~----~~-----~~~~~~~~~   75 (528)
T 4b8j_A            9 ERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRRE--GLQAQAPVPA--S----AA-----TGVDKKLES   75 (528)
T ss_dssp             ------------------CCCCC-----------------CCCC-----------------------------------C
T ss_pred             CChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhcc--CCCccccccc--c----cc-----cchhhhHHH
Confidence            456899999999765555 56666799999999999999999963  2111110000  0    00     000112244


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  163 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~  163 (518)
                      ++.+++.++++|++.+..|+..|+++++...++++..+++.|++|.|+++|..++.+.++.+|+|+|+++++++++.+..
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  155 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV  155 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            55666666799999999999999999998887899999999999999999997765778889999999999998888888


Q ss_pred             hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh-CCCChhHHHHHHHHHHHhhcCC
Q 010080          164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM-LPNKGSTVRTAAWALSNLIKGP  240 (518)
Q Consensus       164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~  240 (518)
                      ++  |++|.|+.+|.+ +++.++++|+|+|+||+.+++.+++.+...|++++|+.++ .+.+..+++.++|+|++||.+.
T Consensus       156 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~  234 (528)
T 4b8j_A          156 VIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK  234 (528)
T ss_dssp             HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             HHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence            87  799999999988 7899999999999999999999999999999999999999 5678999999999999999875


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhh
Q 010080          241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL  320 (518)
Q Consensus       241 ~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L  320 (518)
                       +.....  ...+++|.|+.+|.+++++++..++|+|++|+.+.+...+.+++.|+++.|+.+| .+++..++.+|+++|
T Consensus       235 -~~~~~~--~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L  310 (528)
T 4b8j_A          235 -PQPSFE--QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALRTV  310 (528)
T ss_dssp             -SCCCHH--HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             -CCCcHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHHHH
Confidence             333332  3579999999999999999999999999999998888888999999999999999 477889999999999


Q ss_pred             hhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC
Q 010080          321 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP  399 (518)
Q Consensus       321 ~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~  399 (518)
                      +|++.+++..++.+++.      |+++.|+.+|.++ ++.++++|+|+|+||+.+++++++.+++.|++|.|+.+|.+++
T Consensus       311 ~nl~~~~~~~~~~~~~~------~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~  384 (528)
T 4b8j_A          311 GNIVTGDDAQTQCIIDH------QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE  384 (528)
T ss_dssp             HHHTTSCHHHHHHHHTT------THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHcCCHHHHHHHHHh------hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence            99999988888888865      5999999999998 8999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC---------
Q 010080          400 FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP---------  470 (518)
Q Consensus       400 ~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~---------  470 (518)
                      ++++++|+|+|+|++..     ++    .+++.++++.|++++|+.+|..+|++++..++++|.+|+...+         
T Consensus       385 ~~v~~~a~~aL~nl~~~-----~~----~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~  455 (528)
T 4b8j_A          385 FDIKKEAAWAISNATSG-----GS----HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGD  455 (528)
T ss_dssp             HHHHHHHHHHHHHHHHH-----SC----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHcC-----CC----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            99999999999999874     22    3678899999999999999999999999999999999997542         


Q ss_pred             CCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCCC
Q 010080          471 NHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLD  517 (518)
Q Consensus       471 ~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~~  517 (518)
                      .+.+..+++++||+++|+.|++|+|++++++|..|+++||+.++++|
T Consensus       456 ~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~  502 (528)
T 4b8j_A          456 VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDT  502 (528)
T ss_dssp             CCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred             ccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence            23567899999999999999999999999999999999999877653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.8e-62  Score=520.89  Aligned_cols=493  Identities=29%  Similarity=0.466  Sum_probs=403.0

Q ss_pred             CCCCccCccccccccccc-C-chH-HhhhHHHHHHHhhHhhHHHHHHhhhccCCCC-CCCCCCCCCcccchHHHHHHHhh
Q 010080            1 MADDSLNHHKRDPIKSSV-G-NVA-AQRRRQNAVTVGKERRESLVRAKRLCRVGTS-ADGEVSSDSDMMVDEEQSILEMQ   76 (518)
Q Consensus         1 ~~~~~~~~~r~~~~k~~~-~-~~~-~~rr~~~~~~~rk~~r~~~l~~kR~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   76 (518)
                      |++.++++.|++.||+++ . .++ ||||++.+++|||+|||++|.|||+..  .. ..++.+++.+. .....+.....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~   84 (530)
T 1wa5_B            8 STSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFI--PPTDGADSDEEDES-SVSADQQFYSQ   84 (530)
T ss_dssp             ----CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC-----------------------------
T ss_pred             CCCCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCC--ccccccccCCchhh-hhhhhhhhhhh
Confidence            667788899999999866 4 333 566667999999999999999888632  11 00111100000 00000011101


Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 010080           77 TSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG  156 (518)
Q Consensus        77 ~~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~  156 (518)
                      ..   +.+..+++.++++|++.+..|+..|+++++.+.++++..+++.|++|.|+++|.+++++.++.+|+|+|++++++
T Consensus        85 ~~---~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~  161 (530)
T 1wa5_B           85 LQ---QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG  161 (530)
T ss_dssp             -----CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred             hH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence            11   234445555678999999999999999999877788889999999999999999764577888999999999999


Q ss_pred             ChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHH
Q 010080          157 KQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS  234 (518)
Q Consensus       157 ~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  234 (518)
                      +++.+..++  |++|.|+.+|.+ +++.++++|+|+|+||+.+++.+++.+...|++++|+.++.+.+..+++.++|+|+
T Consensus       162 ~~~~~~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  240 (530)
T 1wa5_B          162 TSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS  240 (530)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHH
Confidence            988888886  799999999987 78999999999999999999999999999999999999999989999999999999


Q ss_pred             HhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchh
Q 010080          235 NLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI  314 (518)
Q Consensus       235 nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~  314 (518)
                      +||.+..+....  ....+++|.|+.++.+++++++..++|+|.+|+.+.++..+.+++.|+++.|+.+|. +++..++.
T Consensus       241 ~L~~~~~~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~  317 (530)
T 1wa5_B          241 NLCRGKKPQPDW--SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTLVQT  317 (530)
T ss_dssp             HHHCCSSSCCCH--HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHH
T ss_pred             HHhCCCCCCCcH--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC-CCChhhHH
Confidence            999875444332  335799999999999999999999999999999987788888999999999999994 78889999


Q ss_pred             hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080          315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  394 (518)
Q Consensus       315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l  394 (518)
                      +|+++|+|++.+++...+.+++.      |+++.|+.+|.++++.++++|+|+|+||+.+++++++.+++.|++|.|+.+
T Consensus       318 ~a~~~L~~l~~~~~~~~~~~~~~------~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l  391 (530)
T 1wa5_B          318 PALRAVGNIVTGNDLQTQVVINA------GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL  391 (530)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHc------chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            99999999999988877777754      699999999999999999999999999999999999999999999999999


Q ss_pred             hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC---
Q 010080          395 LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN---  471 (518)
Q Consensus       395 L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~---  471 (518)
                      |.+++++++++|+|+|+|++...     +|.  .+++.++++.|+++.|+.+|..++++++..++++|.+++..++.   
T Consensus       392 L~~~~~~v~~~a~~aL~~l~~~~-----~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~  464 (530)
T 1wa5_B          392 LEVAEYKTKKEACWAISNASSGG-----LQR--PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE  464 (530)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHT-----TTC--THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHhcC-----CCc--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999999998742     110  15678899999999999999999999999999999999975432   


Q ss_pred             ------CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCC
Q 010080          472 ------HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGL  516 (518)
Q Consensus       472 ------~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~  516 (518)
                            +++...++++||+++|+.|++|++++++++|..+|++||++++++
T Consensus       465 ~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          465 ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             cccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence                  346678999999999999999999999999999999999887664

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=7.7e-50  Score=414.58  Aligned_cols=416  Identities=31%  Similarity=0.503  Sum_probs=367.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKA-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK  162 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~-g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~  162 (518)
                      ++.+++.++++|+..+..|+..|+++++.+.++++..+++. |++|.|+++|++++++..+..|+|+|++++.++++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            34444445589999999999999999887667888888888 99999999999875577888999999999999888887


Q ss_pred             Hhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcC
Q 010080          163 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       163 ~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~  239 (518)
                      .++  |++|.|+.+|.+ +++.+++.|+|+|+|++.+++..++.++..|++++|+.++.+ .+..+++.++|+|++|+++
T Consensus       102 ~~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            776  799999999988 789999999999999999999999999999999999999995 6899999999999999987


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhh
Q 010080          240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS  319 (518)
Q Consensus       240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~  319 (518)
                      ..+......  ..+++|.|++++.++|++++..++|+|.+|+.+.++..+.+.+.|+++.|+.+| .+++..++..++++
T Consensus       181 ~~~~~~~~~--~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~  257 (450)
T 2jdq_A          181 KSPPPEFAK--VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRA  257 (450)
T ss_dssp             SSSCCCGGG--TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             CCCCCCHHH--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHH
Confidence            534443333  379999999999999999999999999999987777888888999999999999 47888999999999


Q ss_pred             hhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC
Q 010080          320 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP  399 (518)
Q Consensus       320 L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~  399 (518)
                      |++++.+++...+.+++.      |+++.|+.+|.++++.+++.|+|+|+|++.+++++.+.+++.|++|.|+++|.+++
T Consensus       258 L~~l~~~~~~~~~~~~~~------~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~  331 (450)
T 2jdq_A          258 VGNIVTGDDIQTQVILNC------SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE  331 (450)
T ss_dssp             HHHHTTSCHHHHHHHHTT------THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred             HHHHhhCChHHHHHHHHC------ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence            999999887777777754      59999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC--------
Q 010080          400 FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN--------  471 (518)
Q Consensus       400 ~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~--------  471 (518)
                      +++|++|+|+|+|++.+     ++    .++++++++.|+++.|+++|..++++++..++++|.+++..++.        
T Consensus       332 ~~v~~~a~~~L~~l~~~-----~~----~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~  402 (450)
T 2jdq_A          332 FRTRKEAAWAITNATSG-----GS----AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTG  402 (450)
T ss_dssp             HHHHHHHHHHHHHHHHH-----CC----HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred             HHHHHHHHHHHHHHHcC-----CC----HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccc
Confidence            99999999999999874     12    36778889999999999999999999999999999999975432        


Q ss_pred             -CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCCCC
Q 010080          472 -HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE  518 (518)
Q Consensus       472 -~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~~~  518 (518)
                       +++...++++||+++|+.|++|+|.+++++|..+|++||++++++++
T Consensus       403 ~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~  450 (450)
T 2jdq_A          403 INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSS  450 (450)
T ss_dssp             CCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             hhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccccCC
Confidence             24567899999999999999999999999999999999998887664

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1e-46  Score=386.01  Aligned_cols=366  Identities=21%  Similarity=0.216  Sum_probs=295.7

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCHHHHHHHhcCCCC-----------hHHHHHH
Q 010080           79 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPI-ETALKAGAIPVLVQCLAFGSP-----------DEQLLEA  146 (518)
Q Consensus        79 ~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~-~~~i~~g~ip~Lv~~L~~~~~-----------~~~~~eA  146 (518)
                      ..++.+.+++.++.+.|++.      .+|++++.+.++++ ..++++|++|.||++|+..+.           ++++++|
T Consensus        29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a  102 (458)
T 3nmz_A           29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA  102 (458)
T ss_dssp             ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence            34566777777778888873      78888888888888 778899999999999996433           6888999


Q ss_pred             HHHHHHHhcCChHHHHHhc--CCh----------HHHHHhhcCCC-CHH-----HHH-------HHHHHHHhhhCCChhh
Q 010080          147 AWCLTNIAAGKQEETKALL--PAL----------PLLIAHLGEKS-SSP-----VAE-------QCAWALGNVAGEGEEF  201 (518)
Q Consensus       147 ~~~L~nia~~~~~~~~~v~--~~v----------~~Lv~lL~~~~-~~~-----v~~-------~a~~~L~nla~d~~~~  201 (518)
                      +|+|+||++++++.++...  +++          +.+++++.++. +.+     +++       +|+|+|+||+.+ +++
T Consensus       103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~  181 (458)
T 3nmz_A          103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH  181 (458)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence            9999999999998888765  355          66777787632 122     555       999999999885 899


Q ss_pred             HHHHHhcCChhHHHhhhCC-----------CChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchHHHHHHHhccCChhH
Q 010080          202 RNVLLSQGALPPLARMMLP-----------NKGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLLDAILRHLKRADEEL  269 (518)
Q Consensus       202 r~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~-~~~~l~~L~~lL~~~d~~v  269 (518)
                      |+.+.+.|++++|+.+|..           .++.++++|+|+|.|||.+++  ..+..+. ..|++|.|+++|.++++++
T Consensus       182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~--~~k~~i~~~~GaIp~LV~LL~s~~~~v  259 (458)
T 3nmz_A          182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKATLCSMKGCMRALVAQLKSESEDL  259 (458)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHCHHHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCc--ccHHHHHHcCCcHHHHHHHHhCCCHHH
Confidence            9999999999999999942           247789999999999998753  2343442 4577999999999999999


Q ss_pred             HHHHHHHHHHhhcC-CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC-CcccceeeccCCCchhhhHH
Q 010080          270 TTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD-SSTISDVLVPGHGITDQVIA  347 (518)
Q Consensus       270 ~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~-~~~~~~~i~~G~~~~~~~l~  347 (518)
                      +..++|+|.||+.+ +++..+.+.+.|+++.|+++|..+.+..++.+++++|+|++.+. +.+...+...      |++|
T Consensus       260 ~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~------Gal~  333 (458)
T 3nmz_A          260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD------GALA  333 (458)
T ss_dssp             HHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHST------THHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhc------CcHH
Confidence            99999999999985 45678889999999999998755667889999999999999844 3343333243      6999


Q ss_pred             HHHHHhccChh----hhHHHHHHHHHHhcc---CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC
Q 010080          348 VLVKCLKSEHR----VLKKEAAWVLSNIAA---GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG  420 (518)
Q Consensus       348 ~L~~lL~~~~~----~i~~~a~~~Lsnl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~  420 (518)
                      .|+.+|.+.+.    .++++|+|+|+||+.   +++++++.++++|++|.|+.+|.+++.+++++|+|+|+|++..    
T Consensus       334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~----  409 (458)
T 3nmz_A          334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR----  409 (458)
T ss_dssp             HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS----
T ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC----
Confidence            99999987754    489999999999997   7889999999999999999999999999999999999999863    


Q ss_pred             CCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          421 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       421 ~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                        +    .++...+++.|++++|+++|.++++.++..++.+|.+|+..-
T Consensus       410 --~----~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          410 --N----PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             --C----HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             --C----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence              2    477889999999999999999999999999999999999754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=5.9e-43  Score=363.10  Aligned_cols=362  Identities=14%  Similarity=0.113  Sum_probs=304.8

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHH
Q 010080          126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  203 (518)
Q Consensus       126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  203 (518)
                      .+|.|+.+|++++ +..+..|+|+|.+++.+++..+..++  |++|.|+.+|.+ +++++++.|+|+|+||+.++++++.
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999876 56788999999999988777776776  899999999997 7899999999999999998899999


Q ss_pred             HHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--------c--------CC
Q 010080          204 VLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--------R--------AD  266 (518)
Q Consensus       204 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~--------~--------~d  266 (518)
                      .+.+.|++|+|+.+|. +++..+++.++|+|+||+.+  +. .+..+.. |++|.|+++|.        +        .+
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~-~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~  156 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DE-LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD  156 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SS-THHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HH-hHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence            9999999999999999 77999999999999999976  23 3444545 99999999993        2        35


Q ss_pred             hhHHHHHHHHHHHhhcCCchhhhHHHhc-CchHHHHHHHcc-----CCCccchhhhhhhhhhhhcC--------------
Q 010080          267 EELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAG--------------  326 (518)
Q Consensus       267 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~--------------  326 (518)
                      ++++..++|+|+||+.+ ++..+.+.+. |+++.|+.+|..     ..+..++..++.+|.|++..              
T Consensus       157 ~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~  235 (457)
T 1xm9_A          157 PEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY  235 (457)
T ss_dssp             HHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence            67888999999999986 7788889987 999999999952     14567788888888888631              


Q ss_pred             ------------------------------------CCcccceeeccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHH
Q 010080          327 ------------------------------------DSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLS  369 (518)
Q Consensus       327 ------------------------------------~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Ls  369 (518)
                                                          .+..++.++      +.++++.|+.+|.++ ++.+++.|+|+|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~l~~L~~lL~~~~~~~~~e~a~~aL~  309 (457)
T 1xm9_A          236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY------HSDAIRTYLNLMGKSKKDATLEACAGALQ  309 (457)
T ss_dssp             TC----------------------------CCCCCSSCCGGGGGG------SHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh------CcchHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence                                                112333344      357899999999765 5789999999999


Q ss_pred             HhccCCHH---HH-HHHH-hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHH
Q 010080          370 NIAAGSVE---HK-QLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI  444 (518)
Q Consensus       370 nl~~~~~~---~~-~~li-~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~  444 (518)
                      ||++++..   ++ +.++ +.|++|.|+++|.+++.+++++|+|+|+|++.+            .+.+.++..|++++|+
T Consensus       310 nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~------------~~~~~~i~~~~i~~Lv  377 (457)
T 1xm9_A          310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH------------PLLHRVMGNQVFPEVT  377 (457)
T ss_dssp             HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS------------GGGHHHHHHHTHHHHH
T ss_pred             HhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC------------HHHHHHHHHhhhHHHH
Confidence            99997533   23 4455 689999999999999999999999999999874            2346677789999999


Q ss_pred             HhhccCCH------HHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC-CHHHHHHHHHHHHhhcCccC
Q 010080          445 DLVRSADI------EAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-NEDLRNMANGLVDKYFGEDY  514 (518)
Q Consensus       445 ~lL~~~d~------~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~-~~~i~~~a~~il~~~f~~~~  514 (518)
                      ++|..+++      +++..++.+|.+|+...  ......+.++||+++|.+|+.|+ ++++|+.|..+|.+||.+.+
T Consensus       378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~--~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQ--PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC--THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HhccCCCCCCCCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            99998753      68889999999998654  34678889999999999999999 99999999999999998764

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.7e-43  Score=381.47  Aligned_cols=365  Identities=17%  Similarity=0.103  Sum_probs=309.3

Q ss_pred             HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010080           81 VEELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ  158 (518)
Q Consensus        81 ~~~l~~~l~~~~s~--~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~  158 (518)
                      ++.+.++|.   ++  |.+.+..|+..|.. |+...+.....+.+.|++|.|+++|++++ ..+++.|+|+|+||+.+++
T Consensus       379 v~~l~~lL~---~~~~d~~v~~~AveaLay-LS~~~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d  453 (810)
T 3now_A          379 AEACRRFLI---KPGKDKDIRRWAADGLAY-LTLDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE  453 (810)
T ss_dssp             HHHHHHHHH---CSSCCSSHHHHHHHHHHH-HTTSHHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHhc---CCCCCHHHHHHHHHHHHH-HhCCcHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence            455555554   55  78899999999999 56654333333445899999999999765 5688999999999998652


Q ss_pred             -----------------------------HHH---HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH
Q 010080          159 -----------------------------EET---KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV  204 (518)
Q Consensus       159 -----------------------------~~~---~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~  204 (518)
                                                   ..+   +.++  |++|.|+.+|.+ +++.++++|+|+|+||+++ +++|..
T Consensus       454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d-~~~r~~  531 (810)
T 3now_A          454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCGL-KELRGK  531 (810)
T ss_dssp             CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHHH
Confidence                                         112   5555  799999999988 7899999999999999985 679999


Q ss_pred             HHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh-hHHHHHHHHHHHhhcC
Q 010080          205 LLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSAL  283 (518)
Q Consensus       205 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~  283 (518)
                      ++++|++|+|+.++.+.+...+++|+|+|+|||.+.+|...+......+++|.|+.+|.+++. ....+++|+|.||+.+
T Consensus       532 Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~  611 (810)
T 3now_A          532 VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM  611 (810)
T ss_dssp             HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999875543322111124799999999986544 4457899999999998


Q ss_pred             CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHH
Q 010080          284 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE  363 (518)
Q Consensus       284 ~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~  363 (518)
                      +++..+.+++.|+++.|+.+|. ++++.++.+|+++|+|++.+++.+++.+..      .|.++.|+.++.+.+..++++
T Consensus       612 ~d~~~~~Ii~aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~------~g~l~~Lv~LL~s~d~~vq~~  684 (810)
T 3now_A          612 NESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFEGN------NDRVKFLALLCEDEDEETATA  684 (810)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTSHHHHHHHHSS------SSHHHHHHHGGGCSSHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCChHHHHHHHhc------cCcHHHHHHHhcCCCHHHHHH
Confidence            8888899999999999999995 788999999999999999988766655422      369999999999999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHh-CCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHH
Q 010080          364 AAWVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG  442 (518)
Q Consensus       364 a~~~Lsnl~~~~~~~~~~li~-~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~  442 (518)
                      |+|+|+||+++++.+++.+++ .|++|+|+++|.+++.+++++|+|+|+|++.+.          .++..++++.|++++
T Consensus       685 Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s----------~e~~~~l~e~G~i~~  754 (810)
T 3now_A          685 CAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG----------EEIAKKLFETDIMEL  754 (810)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC----------HHHHHHHHTSTHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC----------HHHHHHHHHCCCHHH
Confidence            999999999988899999999 899999999999999999999999999998731          477899999999999


Q ss_pred             HHHhhccC---CHHHHHHHHHHHHHHHccC
Q 010080          443 FIDLVRSA---DIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       443 L~~lL~~~---d~~~~~~~l~~l~~il~~~  469 (518)
                      |+++|..+   +++++..++++|+++++.+
T Consensus       755 L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          755 LSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             HTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            99999765   6899999999999999754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.7e-39  Score=337.04  Aligned_cols=361  Identities=17%  Similarity=0.180  Sum_probs=299.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  160 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~  160 (518)
                      ++.++.++.   ++|++.+..|+..|+++ +....+....+++.|++|.|+++|++++ +..++.|+|+|+|++.+++++
T Consensus         4 l~~lv~~L~---s~~~~~q~~A~~~L~~l-~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~   78 (457)
T 1xm9_A            4 IPKAVQYLS---SQDEKYQAIGAYYIQHT-CFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             HHHHHHHHH---SSCTHHHHHHHHHHHHH-TSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHHC---CCCHHHHHHHHHHHHHH-HcCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHH
Confidence            345566554   88999999999999995 4433333447889999999999999755 678889999999999998889


Q ss_pred             HHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC--------C--------CC
Q 010080          161 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--------P--------NK  222 (518)
Q Consensus       161 ~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~--------~--------~~  222 (518)
                      +..++  |++|.|+.+|..+++++++++|+|+|+||+.+ ++.|..+++ |++|+|+.++.        +        .+
T Consensus        79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~  156 (457)
T 1xm9_A           79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD  156 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred             HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence            99887  89999999998447899999999999999996 789999999 99999999993        2        24


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCchhhHHHhh-chHHHHHHHhcc------CChhHHHHHHHHHHHhhcC------------
Q 010080          223 GSTVRTAAWALSNLIKGPDPKPATELIKVD-GLLDAILRHLKR------ADEELTTEVAWVVVYLSAL------------  283 (518)
Q Consensus       223 ~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~-~~l~~L~~lL~~------~d~~v~~~a~~~L~~L~~~------------  283 (518)
                      ..++++++|+|+|||.+  + ..++.+... |++|.|+.+|.+      .+..+...++++|.+|+..            
T Consensus       157 ~~v~~~a~~aL~nLs~~--~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~  233 (457)
T 1xm9_A          157 PEVFFNATGCLRNLSSA--D-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL  233 (457)
T ss_dssp             HHHHHHHHHHHHHHTTS--H-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHccC--H-HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence            67888999999999975  3 355566565 999999999986      4667889999999998621            


Q ss_pred             --------------------------------------CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          284 --------------------------------------SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       284 --------------------------------------~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                                                            .+...+.+++.|+++.|+.+|..+.++.++.+|+++|+|++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~  313 (457)
T 1xm9_A          234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA  313 (457)
T ss_dssp             HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence                                                  122445677788999999999766778899999999999999


Q ss_pred             CCCccc----ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCCh-
Q 010080          326 GDSSTI----SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF-  400 (518)
Q Consensus       326 ~~~~~~----~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~-  400 (518)
                      ++....    +.++.     +.|++|.|+.+|.+++..++++|+|+|+|++.+.  +.+.++..|++|+|+++|.++++ 
T Consensus       314 ~~~~~~~~~~~~~v~-----~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~  386 (457)
T 1xm9_A          314 SKGLMSSGMSQLIGL-----KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGN  386 (457)
T ss_dssp             CSSSHHHHHHHHHHT-----TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSC
T ss_pred             CcCcchHHHHHHHHH-----HcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCC
Confidence            876532    33342     2368999999999999999999999999998753  55667777899999999988653 


Q ss_pred             -----hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC-CHHHHHHHHHHHHHHHcc
Q 010080          401 -----DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRG  468 (518)
Q Consensus       401 -----~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~~~~~~l~~l~~il~~  468 (518)
                           ++...++++|.|++.+.          .++.+.+.+.|++++|++++.++ ++++.+.|..+|++++..
T Consensus       387 ~~~~~~v~~~~l~~l~ni~~~~----------~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          387 TSNSEDILSSACYTVRNLMASQ----------PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             STTHHHHHHHHHHHHHHHHTTC----------THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             CCCcHHHHHHHHHHHHHHHhcC----------HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence                 68889999999998642          26778899999999999999999 899999999999998753

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=344.92  Aligned_cols=407  Identities=17%  Similarity=0.201  Sum_probs=330.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  163 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~  163 (518)
                      +..+++.++++++..+..|+..|+++.+.. ......+++.|++|.|+.+|++++ ...+..++.+|++++.++++.+..
T Consensus       100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~~  177 (644)
T 2z6h_A          100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI  177 (644)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHHHH
Confidence            444555667899999999999999976654 345567778999999999999765 444445677999999988888888


Q ss_pred             hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                      ++  |+++.|+.+|.+.....+++.++.+|.|++. ++..|..+++.|+++.|+.++.+.+..+++.++|+|.|||+...
T Consensus       178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  256 (644)
T 2z6h_A          178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  256 (644)
T ss_dssp             HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred             HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence            77  7999999999986678899999999999997 77899999999999999999999999999999999999998642


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC-ccchhhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS-LQLLIPVLRSL  320 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~-~~v~~~al~~L  320 (518)
                      .   .+.  ..+++|.|++++.+++++++..++|+|.+|+.++++..+.+.+.|+++.|+.+|...++ ..++.+++++|
T Consensus       257 ~---~~~--~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          257 K---QEG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             T---CCS--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             h---hhh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            2   122  35899999999999999999999999999999877888999999999999999964333 68999999999


Q ss_pred             hhhhcCCCc--ccce-eeccCCCchhhhHHHHHHHhccCh-hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc
Q 010080          321 GNLVAGDSS--TISD-VLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS  396 (518)
Q Consensus       321 ~nl~~~~~~--~~~~-~i~~G~~~~~~~l~~L~~lL~~~~-~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~  396 (518)
                      +|++..+..  +.+. +++      .++++.|+.+|.+++ +.++++|+|+|+||+.+... .+.+++.|++|.|+++|.
T Consensus       332 ~nL~~~~~~~~~~q~~v~~------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~  404 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLV  404 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHH------TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHH------ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHh
Confidence            999875432  3333 443      469999999999875 69999999999999987644 488999999999999999


Q ss_pred             CCChhHHHHHHHHHHH--hcCCCCCCCCCchhHH--------------HHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080          397 TSPFDIKKEVAYVLGN--LCVSPTEGEGKPKLIQ--------------EHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ  460 (518)
Q Consensus       397 ~~~~~v~~eA~~aL~n--l~~~~~~~~~~~~~~~--------------~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~  460 (518)
                      +.++++|++|+|+++|  ++.+     ++++++.              +....+.+.|++++|+.+|.+.++.++..++.
T Consensus       405 ~~~~~vr~~a~~al~n~~~~~~-----~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~  479 (644)
T 2z6h_A          405 RAHQDTQRRTSMGGTQQQFVEG-----VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG  479 (644)
T ss_dssp             HHHHHHTTC----------CCS-----SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred             ccchhhhhHhhhccccchhccc-----ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHH
Confidence            9888888888888887  4321     2221110              12246779999999999999999999999999


Q ss_pred             HHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHH------------------HHH--HHHHHHhhcCcc
Q 010080          461 FMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDL------------------RNM--ANGLVDKYFGED  513 (518)
Q Consensus       461 ~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i------------------~~~--a~~il~~~f~~~  513 (518)
                      +|.++...   .+.+..++++||++.|..|++++|+++                  |++  +.+|+++||..+
T Consensus       480 aL~~l~~~---~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~  549 (644)
T 2z6h_A          480 VLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE  549 (644)
T ss_dssp             HHHHHHTS---HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHcC---HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence            99998742   346788999999999999999999999                  544  677888888765

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.4e-38  Score=336.89  Aligned_cols=405  Identities=17%  Similarity=0.200  Sum_probs=329.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  163 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~  163 (518)
                      ++.+++.++++++..+..|+..|+++.+... .....+++.|++|.|+.+|.+++ ...+..++.+|.+++.++++....
T Consensus       103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~  180 (529)
T 1jdh_A          103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4445556678999999999999999766543 34566778999999999998754 455556888999999988888888


Q ss_pred             hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                      +.  |++|.|+.+|.++.....++.+..+|.|++. ++..+..+.+.|++++|+.++.+++..+++.++|+|.||++...
T Consensus       181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  259 (529)
T 1jdh_A          181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence            77  7999999999886677888999999999997 67899999999999999999999999999999999999998742


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccC-CCccchhhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-NSLQLLIPVLRSL  320 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~-~~~~v~~~al~~L  320 (518)
                      +   .+.  ..+++|.|++++.+++++++..++|+|++|+.++++..+.+.+.|+++.|+.+|..+ .+..++.+++++|
T Consensus       260 ~---~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          260 K---QEG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             T---CSC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             h---hHH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            2   122  358999999999999999999999999999998778899999999999999999642 3468899999999


Q ss_pred             hhhhcCCCcc---cceeeccCCCchhhhHHHHHHHhccCh-hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc
Q 010080          321 GNLVAGDSST---ISDVLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS  396 (518)
Q Consensus       321 ~nl~~~~~~~---~~~~i~~G~~~~~~~l~~L~~lL~~~~-~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~  396 (518)
                      +|++.+++..   ...+++      .|++|.|+.+|.+++ +.++++++|+|+|++.+.. ..+.+++.|++|.|+++|.
T Consensus       335 ~nl~~~~~~~~~~~~~i~~------~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~  407 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLV  407 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHH------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHH------cCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHH
Confidence            9998765431   234554      368999999999876 5999999999999998754 4578899999999999999


Q ss_pred             CCChhHHHHHHHHHHHhcCCCCCCCCCchhH--------------HHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHH
Q 010080          397 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI--------------QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFM  462 (518)
Q Consensus       397 ~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~--------------~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l  462 (518)
                      ++++++|++|+|+++|.+..   .++++.++              .+....+.+.|+++.|+.++.+++++++..+..+|
T Consensus       408 ~~~~~v~~~a~~~l~n~~~~---~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l  484 (529)
T 1jdh_A          408 RAHQDTQRRTSMGGTQQQFV---EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL  484 (529)
T ss_dssp             HHHHHHC-----------CB---TTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhcccCchhhh---ccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHH
Confidence            99999999999999993221   12333221              12335578899999999999999999999999999


Q ss_pred             HHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080          463 ELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  509 (518)
Q Consensus       463 ~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~  509 (518)
                      .++..   +..++..+++.||++.|+.|++|+|++|+++|..+|.++
T Consensus       485 ~~l~~---~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          485 CELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHTT---SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHhc---CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            99863   234678899999999999999999999999999999864

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.6e-38  Score=334.73  Aligned_cols=365  Identities=20%  Similarity=0.312  Sum_probs=317.9

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080          126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  202 (518)
Q Consensus       126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  202 (518)
                      .++.+|+.|.+++ ...|++|+..+..+.+... ...+.++  |+||.|+.+|.++++++++..|+|+|+|||.++++.+
T Consensus        58 ~i~~~v~~l~s~d-~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           58 SVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            4677888998876 6678999999998765432 2366777  8999999999876779999999999999999899999


Q ss_pred             HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh-----hHHHHHHHHH
Q 010080          203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-----ELTTEVAWVV  277 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-----~v~~~a~~~L  277 (518)
                      ..+++.|++|.|+.+|.+++..+++.|+|+|+||+...  ...++.+...|+++.|+.++...+.     .++..++|+|
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L  214 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL  214 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999642  3456677788999999999986653     4678999999


Q ss_pred             HHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh
Q 010080          278 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH  357 (518)
Q Consensus       278 ~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~  357 (518)
                      ++++.+...........|+++.|+.+| .+++.+++..++++|++++.++++..+.+++.      |+++.|+.+|.+.+
T Consensus       215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~------g~i~~Lv~lL~~~~  287 (510)
T 3ul1_B          215 SNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKK------GVVPQLVKLLGATE  287 (510)
T ss_dssp             HHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT------TCHHHHHHHHTCSC
T ss_pred             HHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc------ccchhhhhhhcCCC
Confidence            999987665555555678999999998 58889999999999999998887777777754      59999999999999


Q ss_pred             hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 010080          358 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR  437 (518)
Q Consensus       358 ~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~  437 (518)
                      ..++..|+++|+||+.+++.+.+.+++.|+++.|+.+|++++..++++|+|+|+|++.+.          .++...+++.
T Consensus       288 ~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~----------~~~~~~v~~~  357 (510)
T 3ul1_B          288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------QDQIQQVVNH  357 (510)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC----------HHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc----------HHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999998742          4778899999


Q ss_pred             CchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 010080          438 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       438 g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~  511 (518)
                      |+++.|+.+|.+++.+++..+.++|.++...+.. .....+.+.|+++.|.+|..++++++...+...|.+++.
T Consensus       358 g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~-~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  430 (510)
T 3ul1_B          358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  430 (510)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999876432 334567789999999999999999999999888877653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=8.6e-39  Score=344.87  Aligned_cols=397  Identities=15%  Similarity=0.081  Sum_probs=320.5

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHc----CCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChHHHH
Q 010080           89 AYHGKGAMQKRVNALRELRRLLSRFE-FPPIETALKA----GAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQEETK  162 (518)
Q Consensus        89 ~~~~s~~~~~~~~a~~~lr~lls~~~-~~~~~~~i~~----g~ip~Lv~~L~~~~-~~~~~~eA~~~L~nia~~~~~~~~  162 (518)
                      ..+++++...+..|+..|+++-+... +++. ..++.    .++|.|+++|.++. +++.+..|+|+|.+++.+......
T Consensus       337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~-~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~  415 (810)
T 3now_A          337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAI-RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEK  415 (810)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSC-CSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHhccccccCccc-cchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence            34457888889999999999754322 2221 12223    34778889998761 345667799999999977654444


Q ss_pred             Hhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-----------------------------hhH---HHHHhc
Q 010080          163 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-----------------------------EFR---NVLLSQ  208 (518)
Q Consensus       163 ~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-----------------------------~~r---~~~~~~  208 (518)
                      .+.  |++|.|+.+|.+ ++..++..|+|+|+||+.+.+                             ..+   +.+++.
T Consensus       416 lv~d~g~Ip~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea  494 (810)
T 3now_A          416 LIEDKASIHALMDLARG-GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE  494 (810)
T ss_dssp             HHHCHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHccchHHHHHHHhCC-CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC
Confidence            443  699999999987 788999999999999997542                             123   688999


Q ss_pred             CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080          209 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT  288 (518)
Q Consensus       209 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~  288 (518)
                      |++|+|+.++.++++.+++.|+|+|+||+..   ..++..+...|++|.|+.+|.++++..+..|+|+|++|+.+.+...
T Consensus       495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d---~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~  571 (810)
T 3now_A          495 GITTALCALAKTESHNSQELIARVLNAVCGL---KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV  571 (810)
T ss_dssp             THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence            9999999999999999999999999999953   2366777789999999999999999999999999999997433221


Q ss_pred             h--HHHhcCchHHHHHHHccCCCc-cchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHH
Q 010080          289 S--LLVKSGVLQLLVERLATSNSL-QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA  365 (518)
Q Consensus       289 ~--~~~~~g~~~~Lv~lL~~~~~~-~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~  365 (518)
                      .  .....|+++.|+.+|. ++.. .....|+++|+|++.+++...+.+++.      |+++.|+.+|.++++.+++.|+
T Consensus       572 ~~~~~~~~~aIppLv~LL~-~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a------G~l~~Lv~LL~s~~~~Vq~~A~  644 (810)
T 3now_A          572 SFSGQRSLDVIRPLLNLLQ-QDCTALENFESLMALTNLASMNESVRQRIIKE------QGVSKIEYYLMEDHLYLTRAAA  644 (810)
T ss_dssp             HTTTHHHHHTHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHHHSCCTTHHHHHH
T ss_pred             hhcchhhhcHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc------CCHHHHHHHHcCCCHHHHHHHH
Confidence            1  0012468999999984 4322 334589999999999987777778865      5999999999999999999999


Q ss_pred             HHHHHhccCCHHHHHHHHh-CCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-cCchHHH
Q 010080          366 WVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-RGCLSGF  443 (518)
Q Consensus       366 ~~Lsnl~~~~~~~~~~li~-~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-~g~i~~L  443 (518)
                      |+|+||+.+. +....+++ .|.++.|+.++.+.+..+|++|+|+|+|++.+      +    ..+++.+++ .|++++|
T Consensus       645 ~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~------s----~~~~~~ii~~~g~I~~L  713 (810)
T 3now_A          645 QCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV------S----VKCCEKILAIASWLDIL  713 (810)
T ss_dssp             HHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------C----HHHHHHHHTSTTHHHHH
T ss_pred             HHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC------C----HHHHHHHHHHcCCHHHH
Confidence            9999999865 45555665 79999999999999999999999999999873      2    367899998 8999999


Q ss_pred             HHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC---CCHHHHHHHHHHHHhhc
Q 010080          444 IDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH---ENEDLRNMANGLVDKYF  510 (518)
Q Consensus       444 ~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~---~~~~i~~~a~~il~~~f  510 (518)
                      +.+|.++|.+++..++++|.|+..+.  ......+.++||++.|.+|...   .+.++++.|.+.|+..-
T Consensus       714 v~LL~s~d~~vq~~A~~aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          714 HTLIANPSPAVQHRGIVIILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999998743  2346788899999999998643   48999999988887643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.6e-37  Score=329.04  Aligned_cols=366  Identities=18%  Similarity=0.296  Sum_probs=318.7

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080          124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  200 (518)
Q Consensus       124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~  200 (518)
                      .-.+|.|++.|.+++ +..+..|+|+|.+++++.. .....++  |++|.|+.+|.+++++.++..|+|+|+||+.++++
T Consensus        73 ~~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           73 LESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             --CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            346999999998765 6678899999999987654 4556665  79999999998844499999999999999998899


Q ss_pred             hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHHHHHHH
Q 010080          201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVY  279 (518)
Q Consensus       201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~  279 (518)
                      .+..++..|++|+|+.++.+++..++..|+|+|+||+...  ...+..+...|++|.|+.+| .+.++.++..++|+|++
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~  229 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS--PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN  229 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC--HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999653  23455666789999999999 57789999999999999


Q ss_pred             hhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080          280 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV  359 (518)
Q Consensus       280 L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~  359 (518)
                      |+.+.+ ........|+++.|+.+| .+++..++..++++|++++.+.+...+.+++.      |+++.|+.+|.++++.
T Consensus       230 L~~~~~-~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~------g~v~~Lv~lL~~~~~~  301 (528)
T 4b8j_A          230 FCRGKP-QPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEA------GVCPRLVELLLHPSPS  301 (528)
T ss_dssp             HHCSSS-CCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHT------TCHHHHHHHTTCSCHH
T ss_pred             HHcCCC-CCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc------CHHHHHHHHHcCCChh
Confidence            998653 333445589999999999 57889999999999999998887777777754      5999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC-ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC
Q 010080          360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS-PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG  438 (518)
Q Consensus       360 i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g  438 (518)
                      ++..|+|+|+||+.+++...+.+++.|++|.|+.+|.++ +..++++|+|+|+|++.+      +    .+++..+++.|
T Consensus       302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~------~----~~~~~~~~~~~  371 (528)
T 4b8j_A          302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG------N----KDQIQAVINAG  371 (528)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS------C----HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC------C----HHHHHHHHHCC
Confidence            999999999999999999999999999999999999998 999999999999999873      2    46778999999


Q ss_pred             chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 010080          439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~  511 (518)
                      +++.|+.+|.+++++++..++.+|.++...+.. .....+.+.|+++.|..+..++++++...|...|.+++.
T Consensus       372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (528)
T 4b8j_A          372 IIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH-DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK  443 (528)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999876421 234566688999999999999999999999888887764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.6e-37  Score=328.79  Aligned_cols=365  Identities=21%  Similarity=0.313  Sum_probs=318.2

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhh
Q 010080          125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF  201 (518)
Q Consensus       125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~-~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~  201 (518)
                      ..+|.+++.+.+++ ...|++|+..+..+.+.. ....+.++  |+||.|+.+|..++++.++..|+|+|+||+.++++.
T Consensus        76 ~~l~~lv~~l~s~d-~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~  154 (529)
T 3tpo_A           76 WSVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ  154 (529)
T ss_dssp             CCHHHHHHHHTSSC-HHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            35788888998766 567789999999876433 33456666  899999999987678999999999999999989999


Q ss_pred             HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh-----hHHHHHHHH
Q 010080          202 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-----ELTTEVAWV  276 (518)
Q Consensus       202 r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-----~v~~~a~~~  276 (518)
                      +..+++.|++|+|+.++.+++..+++.|+|+|+||+...  ...++.+...|+++.|+.+|...+.     .++..++|+
T Consensus       155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~--~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~  232 (529)
T 3tpo_A          155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT  232 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999642  3456677788999999999986553     468899999


Q ss_pred             HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC
Q 010080          277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE  356 (518)
Q Consensus       277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~  356 (518)
                      |++++.+...........|+++.|+.+| .+++++++..++++|++++.+++...+.+++.      |+++.|+.+|.++
T Consensus       233 L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~------g~i~~Lv~lL~~~  305 (529)
T 3tpo_A          233 LSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKK------GVVPQLVKLLGAT  305 (529)
T ss_dssp             HHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTT------TCHHHHHHHHTCS
T ss_pred             HHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhc------cchHHHHHHhcCC
Confidence            9999987665555566678999999998 58899999999999999999887777777764      5999999999999


Q ss_pred             hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 010080          357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG  436 (518)
Q Consensus       357 ~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~  436 (518)
                      +..++..|+++|+||+.+++.+.+.+++.|+++.|+.+|.+++..++++|+|+|+|++.+.          .++...+++
T Consensus       306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~----------~~~~~~v~~  375 (529)
T 3tpo_A          306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------QDQIQQVVN  375 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC----------HHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc----------HHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999998742          477888999


Q ss_pred             cCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          437 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       437 ~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                      .|+++.|+.+|.+++.+++..+.++|.++...+.. .....+.+.|+++.|.+|..++++++...+...|.+++
T Consensus       376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~-~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil  448 (529)
T 3tpo_A          376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF  448 (529)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876432 23456778999999999999999999999888887765

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.1e-37  Score=325.98  Aligned_cols=362  Identities=20%  Similarity=0.224  Sum_probs=293.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC-ChHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG-KQEETK  162 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~-~~~~~~  162 (518)
                      ++.+++.+.+++++.+.+|+..|+++ +.........+++.|+||.||++|.+++ ..++..|+|+|.||+.+ +++++.
T Consensus        50 i~~LV~~L~s~~~~~q~~Aa~~L~~L-a~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk~  127 (584)
T 3l6x_A           50 LPEVIAMLGFRLDAVKSNAAAYLQHL-CYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKI  127 (584)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHH-HTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHH-HcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHHH
Confidence            34444455689999999999999995 5444566678889999999999999865 67888999999999986 578888


Q ss_pred             Hhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC------------------CCC
Q 010080          163 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML------------------PNK  222 (518)
Q Consensus       163 ~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~------------------~~~  222 (518)
                      .++  |+||.|+.+|.++.+.+++++|+|+|.|++. +++++..++. +++|+|++++.                  .++
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d  205 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW  205 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence            887  8999999999875678999999999999998 6788888885 57999999871                  235


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc------CChhHHHHHHHHHHHhhcCC------------
Q 010080          223 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR------ADEELTTEVAWVVVYLSALS------------  284 (518)
Q Consensus       223 ~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~L~~~~------------  284 (518)
                      ..++++++|+|.||+... +.....++...|+++.|+.++.+      .+...+.+|+|+|.||+...            
T Consensus       206 ~~V~~nAa~~L~NLs~~~-~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~  284 (584)
T 3l6x_A          206 ESVLTNTAGCLRNVSSER-SEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE  284 (584)
T ss_dssp             HHHHHHHHHHHHHHTSSC-HHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred             HHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            799999999999999653 12223344345778899999975      46689999999999999641            


Q ss_pred             -------------chhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc---ceeeccCCCchhhhHHH
Q 010080          285 -------------NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI---SDVLVPGHGITDQVIAV  348 (518)
Q Consensus       285 -------------~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~---~~~i~~G~~~~~~~l~~  348 (518)
                                   ...++.+...++++.|+.+|..+.++.++++|+++|.|++.+.....   +.++.     ..+++|.
T Consensus       285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~-----~~~glp~  359 (584)
T 3l6x_A          285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR-----QEKALSA  359 (584)
T ss_dssp             -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT-----SHHHHHH
T ss_pred             hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH-----HcCcHHH
Confidence                         11233344556778889999666788999999999999998864322   22332     3578999


Q ss_pred             HHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC--------ChhHHHHHHHHHHHhcCCCCCC
Q 010080          349 LVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--------PFDIKKEVAYVLGNLCVSPTEG  420 (518)
Q Consensus       349 L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~--------~~~v~~eA~~aL~nl~~~~~~~  420 (518)
                      |+.+|.+++..+++.|+|+|+||+.+..  .+.+++.|++|.|+++|.++        ..++...|+|+|.|++..    
T Consensus       360 Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~----  433 (584)
T 3l6x_A          360 IADLLTNEHERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE----  433 (584)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC----
Confidence            9999999999999999999999998753  34566889999999999876        357899999999999864    


Q ss_pred             CCCchhHHHHHHHHHhcCchHHHHHhhccC--CHHHHHHHHHHHHHHHc
Q 010080          421 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--DIEAARLGLQFMELVLR  467 (518)
Q Consensus       421 ~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--d~~~~~~~l~~l~~il~  467 (518)
                        +    .++.+.+++.|+|+.|+++|.+.  .+.+++.|..+|.++..
T Consensus       434 --~----~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          434 --N----LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             --C----HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             --C----HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence              2    47788999999999999999986  78999999999999974

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.4e-37  Score=323.42  Aligned_cols=371  Identities=18%  Similarity=0.196  Sum_probs=301.1

Q ss_pred             HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC-Ch
Q 010080          123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GE  199 (518)
Q Consensus       123 ~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d-~~  199 (518)
                      +.+.+|.||++|.+++ +..|++|+|+|++++.++.+.+..++  |+||.|+.+|.+ ++.+++++|+|+|+||+.. ++
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~  123 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQ  123 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCH
Confidence            5889999999999765 67889999999999999999998887  799999999998 7899999999999999984 78


Q ss_pred             hhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc---------------
Q 010080          200 EFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK---------------  263 (518)
Q Consensus       200 ~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~---------------  263 (518)
                      ++|..+.+.|+||+|+.+|.+ .+..++++++|+|+||+..+  .....++  .+++|.|++++.               
T Consensus       124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~--~~alp~Lv~LL~~p~sg~~~~~~~~~k  199 (584)
T 3l6x_A          124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIV--DHALHALTDEVIIPHSGWEREPNEDCK  199 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHH--HHTHHHHHHHTHHHHHCCC--------
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHH--hccHHHHHHHHhccccccccccccccc
Confidence            999999999999999999996 57899999999999999743  3333343  468999999872               


Q ss_pred             ---cCChhHHHHHHHHHHHhhcCCchhhhHHHh-cCchHHHHHHHcc-----CCCccchhhhhhhhhhhhcCCCccc---
Q 010080          264 ---RADEELTTEVAWVVVYLSALSNVATSLLVK-SGVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAGDSSTI---  331 (518)
Q Consensus       264 ---~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~~~~~~---  331 (518)
                         ..|++++..++|+|.||+..+++..+.+.+ .|+++.|+.+|..     ..+...+..|+++|.|++...+...   
T Consensus       200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~  279 (584)
T 3l6x_A          200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA  279 (584)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTC
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccch
Confidence               236799999999999999877666888887 4667899999853     2456788999999999996621110   


Q ss_pred             ---ce----------eeccCC-C--chhhhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCH---HHHHHHH-hCCCHHH
Q 010080          332 ---SD----------VLVPGH-G--ITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSV---EHKQLIH-SSEALAL  390 (518)
Q Consensus       332 ---~~----------~i~~G~-~--~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~---~~~~~li-~~~~i~~  390 (518)
                         ..          +.+.++ .  +..++++.|+.+|. +.++.+++.|+|+|+||+++..   ..++.++ +.+++|.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~  359 (584)
T 3l6x_A          280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSA  359 (584)
T ss_dssp             CC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHH
T ss_pred             hhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHH
Confidence               00          011111 0  23467899999996 4578999999999999998762   2334444 4688999


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC--------CHHHHHHHHHHH
Q 010080          391 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--------DIEAARLGLQFM  462 (518)
Q Consensus       391 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--------d~~~~~~~l~~l  462 (518)
                      |+.+|.+++..+++.|+|+|.||+.++.            .+..+..|+++.|+.+|.++        ..+++..++.+|
T Consensus       360 Lv~LL~s~~~~v~~~A~~aL~nLs~~~~------------~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL  427 (584)
T 3l6x_A          360 IADLLTNEHERVVKAASGALRNLAVDAR------------NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI  427 (584)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHTTCS------------CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCChh------------HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence            9999999999999999999999998631            13445789999999999986        367888999999


Q ss_pred             HHHHccCCCCcchhHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHhhcCcc
Q 010080          463 ELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDKYFGED  513 (518)
Q Consensus       463 ~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~--~~~i~~~a~~il~~~f~~~  513 (518)
                      .||+...  ......+.++||++.|..|..+.  .+.+.+.|..+|..+|...
T Consensus       428 ~NL~a~~--~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          428 NEVIAEN--LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             HHHHTTC--HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             HHHhcCC--HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence            9998542  23567888999999999998775  8899999999999988754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2e-36  Score=320.84  Aligned_cols=369  Identities=17%  Similarity=0.252  Sum_probs=320.3

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080          124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  200 (518)
Q Consensus       124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~-~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~  200 (518)
                      .+.+|.|++.|.+++ +..+..|+++|.++++.. ......++  |++|.|+.+|.+++++.++..|+|+|++++.++++
T Consensus        86 ~~~i~~lv~~L~s~~-~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           86 QQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             -CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            567999999998765 667789999999997653 33344455  79999999998844899999999999999998889


Q ss_pred             hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080          201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  280 (518)
Q Consensus       201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  280 (518)
                      .+..++..|++|+|+.++.+++..++..|+|+|.+|+...  ...++.+...+++|.|+.++.+.+++++..++|+|++|
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L  242 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL  242 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--ccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999653  23455555689999999999999999999999999999


Q ss_pred             hcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhh
Q 010080          281 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL  360 (518)
Q Consensus       281 ~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i  360 (518)
                      +.+...........|+++.|+.+| .+++..++..++++|++++.+.+...+.+++.      |+++.|+.+|.++++.+
T Consensus       243 ~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~------~~v~~Lv~lL~~~~~~v  315 (530)
T 1wa5_B          243 CRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDV------RIPKRLVELLSHESTLV  315 (530)
T ss_dssp             HCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT------TCHHHHHHGGGCSCHHH
T ss_pred             hCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc------CcHHHHHHHHCCCChhh
Confidence            986644555666789999999999 47788999999999999998877666666653      69999999999999999


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080          361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  440 (518)
Q Consensus       361 ~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  440 (518)
                      +..|+|+|+|++.+++...+.+++.|++|.|+.+|.+++..++++|+|+|+|++.+      +    .++++.+++.|++
T Consensus       316 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~------~----~~~~~~~~~~~~l  385 (530)
T 1wa5_B          316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG------N----TEQIQAVIDANLI  385 (530)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------C----HHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC------C----HHHHHHHHHCCCH
Confidence            99999999999999989999999999999999999999999999999999999863      2    3677888999999


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHccCCC-CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080          441 SGFIDLVRSADIEAARLGLQFMELVLRGMPN-HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE  512 (518)
Q Consensus       441 ~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~-~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~  512 (518)
                      +.|+.+|..++++++..++++|.++...+.. ......+.+.|+++.|..+..+++++++..|...|.+++..
T Consensus       386 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~  458 (530)
T 1wa5_B          386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM  458 (530)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999986432 02345566889999999999999999999999999888753

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.8e-35  Score=326.02  Aligned_cols=403  Identities=17%  Similarity=0.214  Sum_probs=323.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  163 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~  163 (518)
                      ++.++..++++++..+..|+..|.++.+... .....+.+.|++|.|+.+|.+++ ...+..|+.+|.+++.++++.+..
T Consensus       236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~  313 (780)
T 2z6g_A          236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI  313 (780)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHH
Confidence            3445556678899999999999999665533 33455668999999999998754 455556889999999888888877


Q ss_pred             hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                      ++  ++++.|+.+|.+.+....++.++.+|.+++. ++..+..++..|+++.|+.++.+.+..+++.++|+|.+|+....
T Consensus       314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~  392 (780)
T 2z6g_A          314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  392 (780)
T ss_dssp             HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence            76  6999999999986667788899999999997 67889999999999999999999999999999999999998753


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCc-cchhhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL-QLLIPVLRSL  320 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~-~v~~~al~~L  320 (518)
                      +.   .  ...+++|.|+++|.+.+++++..++|+|++|+.++++..+.+++.|+++.|+.+|..+.+. .++.+|+++|
T Consensus       393 ~~---~--~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          393 KQ---E--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TC---S--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hh---h--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            21   1  1358999999999999999999999999999998888889999999999999999643443 8999999999


Q ss_pred             hhhhcCCCcc---cceeeccCCCchhhhHHHHHHHhccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc
Q 010080          321 GNLVAGDSST---ISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS  396 (518)
Q Consensus       321 ~nl~~~~~~~---~~~~i~~G~~~~~~~l~~L~~lL~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~  396 (518)
                      +||+..+...   ...++.      .++++.|+.+|.+++. .++++|+|+|+||+.+. .....+++.|++|.|+++|.
T Consensus       468 ~nL~~~~~~~~~~~~~v~~------~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~  540 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLV  540 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHH------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHH------cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHH
Confidence            9998755431   123443      4689999999998775 99999999999999865 44578889999999999998


Q ss_pred             CCChhHHHHHHHHHHH--hcCCCCCCCCCchhH--------------HHHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080          397 TSPFDIKKEVAYVLGN--LCVSPTEGEGKPKLI--------------QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ  460 (518)
Q Consensus       397 ~~~~~v~~eA~~aL~n--l~~~~~~~~~~~~~~--------------~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~  460 (518)
                      +++++++++|+|+++|  ++.+     ++++++              .+....+.+.|++++|+.+|.++++.++..++.
T Consensus       541 ~~~~~~~~~aa~al~nq~~~~~-----~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~  615 (780)
T 2z6g_A          541 RAHQDTQRRTSMGGTQQQFVEG-----VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG  615 (780)
T ss_dssp             HHHHHHHHTTC------CCSTT-----CCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHH
T ss_pred             hcchhHHHHHhhccccchhhcc-----cChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHH
Confidence            8777777777776666  3221     121111              122345778999999999999999999999999


Q ss_pred             HHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080          461 FMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  509 (518)
Q Consensus       461 ~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~  509 (518)
                      +|.++..   +...+..+.++||++.|..|++++|+++++.|...|.++
T Consensus       616 aL~~L~~---~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l  661 (780)
T 2z6g_A          616 VLCELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  661 (780)
T ss_dssp             HHHHHHT---SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhc---CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999973   234678899999999999999999999966554444433

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.5e-35  Score=307.09  Aligned_cols=370  Identities=19%  Similarity=0.257  Sum_probs=310.4

Q ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH
Q 010080           81 VEELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  159 (518)
Q Consensus        81 ~~~l~~~l~~~~s~-~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~  159 (518)
                      ++.+.+++   +++ ++..+..|+..|.++.+... .....+++.|++|.|+++|++++ +.++..|+|+|.+++.+.+.
T Consensus        66 i~~L~~~L---~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~  140 (450)
T 2jdq_A           66 VARFVEFL---KRKENCTLQFESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTM  140 (450)
T ss_dssp             HHHHHHHH---TCTTCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHH---CCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHH
Confidence            34445444   466 89999999999999766432 34456778999999999998754 66777899999999998888


Q ss_pred             HHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC-hhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHh
Q 010080          160 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL  236 (518)
Q Consensus       160 ~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL  236 (518)
                      .+..++  |++|.|+.+|.+.++..++..|+|+|+|++.+. +..+..+ ..+++|.|+.++.+++..++..++|+|.+|
T Consensus       141 ~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            888776  799999999986568999999999999999755 3333222 378999999999999999999999999999


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhh
Q 010080          237 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  316 (518)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~a  316 (518)
                      +.+..  .....+...+++|.|+.++.+++++++..++|+|++++.+.+...+.+++.|+++.|+.+|. ++++.++..|
T Consensus       220 ~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~vr~~a  296 (450)
T 2jdq_A          220 SDGPN--DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS-SPKESIKKEA  296 (450)
T ss_dssp             TSSSH--HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT-CSSHHHHHHH
T ss_pred             HCCCc--HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc-CCCHHHHHHH
Confidence            97632  23334456799999999999999999999999999999988777888889999999999994 7788999999


Q ss_pred             hhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHh
Q 010080          317 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLL  395 (518)
Q Consensus       317 l~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL  395 (518)
                      +++|+|++.+++...+.+++.      +++|.|+.+|.++++.+++.|+|+|+|++.+ ++++++.+++.|++|.|+++|
T Consensus       297 ~~~L~~l~~~~~~~~~~~~~~------~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll  370 (450)
T 2jdq_A          297 CWTISNITAGNRAQIQTVIDA------NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL  370 (450)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHT------THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGG
T ss_pred             HHHHHHHHcCCHHHHHHHHHC------CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHh
Confidence            999999999887777777754      6999999999999999999999999999975 778899999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHhcCCCCCC----CCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080          396 STSPFDIKKEVAYVLGNLCVSPTEG----EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       396 ~~~~~~v~~eA~~aL~nl~~~~~~~----~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~  468 (518)
                      .+.+++++..|+|+|.|++......    .+.   +..++..+.+.|+++.|..++.+++.++...++.+|.+++..
T Consensus       371 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~---~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  444 (450)
T 2jdq_A          371 TVMDSKIVQVALNGLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT  444 (450)
T ss_dssp             GSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---CCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHhchhhhhccccc---hhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            9999999999999999998642100    000   013456788889999999999999999999999999999853

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=296.87  Aligned_cols=326  Identities=18%  Similarity=0.149  Sum_probs=268.6

Q ss_pred             HHHHHHHHHhcCC---------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCH----------HHHHHHhcCCC--C
Q 010080           81 VEELKSAVAYHGK---------GAMQKRVNALRELRRLLSRFEFPPIETALKAGAI----------PVLVQCLAFGS--P  139 (518)
Q Consensus        81 ~~~l~~~l~~~~s---------~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~i----------p~Lv~~L~~~~--~  139 (518)
                      ++-|+++++.-..         ++++.+++|..+|.++.+..+ .......+.|++          +.+++++.+.+  .
T Consensus        72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  150 (458)
T 3nmz_A           72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQP-DDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM  150 (458)
T ss_dssp             HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred             HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCc-chhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence            4556666652212         558999999999999888765 445667778888          77888887542  1


Q ss_pred             h-----------HHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcC----------CCCHHHHHHHHHHHHhhhC
Q 010080          140 D-----------EQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGE----------KSSSPVAEQCAWALGNVAG  196 (518)
Q Consensus       140 ~-----------~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~----------~~~~~v~~~a~~~L~nla~  196 (518)
                      +           ..+..|+|+|.|++.+ ++.++.++  |+++.|+.+|..          +.++.+++.|+|+|.||+.
T Consensus       151 ~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~  229 (458)
T 3nmz_A          151 DQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF  229 (458)
T ss_dssp             CCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence            1           1234799999999765 78888888  899999999942          1347799999999999999


Q ss_pred             CChhhHHHHHh-cCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHH
Q 010080          197 EGEEFRNVLLS-QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVA  274 (518)
Q Consensus       197 d~~~~r~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~  274 (518)
                      +++..+..+.. .|+||+|+.+|.+++.+++..++|+|+||+.+.+ ...+..+...|++|.|+++| .+.+++++..++
T Consensus       230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~  308 (458)
T 3nmz_A          230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVKALMECALEVKKESTLKSVL  308 (458)
T ss_dssp             TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC-HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence            88778877765 5669999999999999999999999999997532 23456666789999999975 567889999999


Q ss_pred             HHHHHhhcCCchhhhHHH-hcCchHHHHHHHccCCCc----cchhhhhhhhhhhhc---CCCcccceeeccCCCchhhhH
Q 010080          275 WVVVYLSALSNVATSLLV-KSGVLQLLVERLATSNSL----QLLIPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVI  346 (518)
Q Consensus       275 ~~L~~L~~~~~~~~~~~~-~~g~~~~Lv~lL~~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~i~~G~~~~~~~l  346 (518)
                      ++|.+|+.+.++....+. ..|+++.|+.+|. +.+.    +++..|+++|.|++.   +++++.+.++++      |++
T Consensus       309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~------G~i  381 (458)
T 3nmz_A          309 SALWNLSAHCTENKADICAVDGALAFLVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN------NCL  381 (458)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT-CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT------THH
T ss_pred             HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc------ccH
Confidence            999999984444555555 7999999999995 4433    378899999999996   677778888765      599


Q ss_pred             HHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          347 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       347 ~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      |.|+.+|.+++..++++|+|+|+|++.+++++++.+++.|++|+|+++|.+++.++++.|+|+|.|++.+
T Consensus       382 ~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          382 QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999975

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=1.8e-34  Score=286.99  Aligned_cols=273  Identities=22%  Similarity=0.254  Sum_probs=234.4

Q ss_pred             CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-----------CChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080          179 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-----------NKGSTVRTAAWALSNLIKGPDPKPATE  247 (518)
Q Consensus       179 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~~~  247 (518)
                      +....+.+|+|+|+||++| +++|+.+.+.|++++|+.+|..           .++.++++|+|+|.|||.+++  ..+.
T Consensus        44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~--~~k~  120 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKA  120 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH--HHHH
T ss_pred             cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH--HHHH
Confidence            3456677999999999996 7999999999999999999952           247899999999999998742  2344


Q ss_pred             HH-HhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC-CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          248 LI-KVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       248 ~i-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                      .+ ...|++|.|+++|.+++++++..++|+|.||+.+ +++....+.+.|+++.|+++|..+.+..++.+++++|+|++.
T Consensus       121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~  200 (354)
T 3nmw_A          121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA  200 (354)
T ss_dssp             HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            44 3456799999999999999999999999999985 456788889999999999986556778899999999999998


Q ss_pred             CCCcccceee-ccCCCchhhhHHHHHHHhccChh----hhHHHHHHHHHHhcc---CCHHHHHHHHhCCCHHHHHHHhcC
Q 010080          326 GDSSTISDVL-VPGHGITDQVIAVLVKCLKSEHR----VLKKEAAWVLSNIAA---GSVEHKQLIHSSEALALLLHLLST  397 (518)
Q Consensus       326 ~~~~~~~~~i-~~G~~~~~~~l~~L~~lL~~~~~----~i~~~a~~~Lsnl~~---~~~~~~~~li~~~~i~~Li~lL~~  397 (518)
                      +.+.....+. .      .|++|.|+.+|.+.+.    .+++.|+|+|+||+.   +++++++.++++|++|.|+++|.+
T Consensus       201 ~~~~nk~~i~~~------~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~  274 (354)
T 3nmw_A          201 HCTENKADICAV------DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS  274 (354)
T ss_dssp             TCHHHHHHHHHS------TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred             cChhhhHHHHHh------cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence            5543333333 3      3699999999987654    489999999999997   788999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080          398 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       398 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~  470 (518)
                      ++..++++|+|+|+|++..      +    .++.+.+++.|++++|+++|.+++++++..+..+|.+|+...+
T Consensus       275 ~~~~v~~~A~~aL~nLa~~------~----~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          275 HSLTIVSNACGTLWNLSAR------N----PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             SCHHHHHHHHHHHHHHTSS------C----HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             CChHHHHHHHHHHHHHhCC------C----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999863      2    4778899999999999999999999999999999999997643

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.1e-33  Score=297.09  Aligned_cols=398  Identities=18%  Similarity=0.228  Sum_probs=324.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  160 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~  160 (518)
                      ++.+.+++.  .++|++.+..|+..|++ ++.... ....+++.|++|.|+++|++++ +..+..|+|+|.|++.++++.
T Consensus        61 i~~Lv~~L~--~~~~~~~~~~a~~~L~~-ls~~~~-~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           61 VSAIVRTMQ--NTNDVETARCTAGTLHN-LSHHRE-GLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHH--HCCCHHHHHHHHHHHHH-HTTSHH-HHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             HHHHHHHHh--cCCCHHHHHHHHHHHHH-HHcCch-hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            344555553  24589999999999999 455433 5677889999999999998765 678888999999999887667


Q ss_pred             HHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhh
Q 010080          161 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLI  237 (518)
Q Consensus       161 ~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~  237 (518)
                      +..+.  |++|.|+.+|.+ ++.+++..++.+|+|++.++++.+..+.+.|+++.|+.++.+. .......++.+|.||+
T Consensus       136 ~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  214 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  214 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence            77775  799999999998 7899999999999999998899999999999999999999865 4567778899999999


Q ss_pred             cCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhh
Q 010080          238 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL  317 (518)
Q Consensus       238 ~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al  317 (518)
                      ..+  . .+..+...|++|.|+.++.+++++++..++|+|.+|+.+.+...   ...|+++.|+.+| .+.+++++..++
T Consensus       215 ~~~--~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll-~~~~~~v~~~a~  287 (529)
T 1jdh_A          215 VCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLL-GSDDINVVTCAA  287 (529)
T ss_dssp             TST--T-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHT-TCSCHHHHHHHH
T ss_pred             cCc--c-cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHH-cCCCHHHHHHHH
Confidence            653  3 34455568999999999999999999999999999998643221   2347899999999 578899999999


Q ss_pred             hhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHH---HHHHHHhCCCHHHHH
Q 010080          318 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVE---HKQLIHSSEALALLL  392 (518)
Q Consensus       318 ~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~---~~~~li~~~~i~~Li  392 (518)
                      ++|+|++.+++.....+.+.      |+++.|+.+|.+.  ++.++..|+++|+|++.++++   ....+++.|++|.|+
T Consensus       288 ~~L~~L~~~~~~~~~~~~~~------~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~  361 (529)
T 1jdh_A          288 GILSNLTCNNYKNKMMVCQV------GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV  361 (529)
T ss_dssp             HHHHHHTTTCHHHHHHHHHT------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHc------CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH
Confidence            99999998876666777654      5999999999763  378999999999999886432   456788999999999


Q ss_pred             HHhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHH--------------
Q 010080          393 HLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARL--------------  457 (518)
Q Consensus       393 ~lL~~~~-~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~--------------  457 (518)
                      .+|++++ ..++++|+|+|+|++.++           +....+.+.|+++.|+.+|.+++++++..              
T Consensus       362 ~lL~~~~~~~v~~~a~~~l~nl~~~~-----------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~  430 (529)
T 1jdh_A          362 KLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV  430 (529)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHHHTTSG-----------GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTB
T ss_pred             HHhccccchHHHHHHHHHHHHHhcCh-----------hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc
Confidence            9999876 599999999999998742           12367889999999999999877666554              


Q ss_pred             --------HHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 010080          458 --------GLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       458 --------~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~  511 (518)
                              ++.+|.++...   ...+..+.+.|+++.|..+..+++++++..|...+.++..
T Consensus       431 ~~~~i~~~~~~al~~L~~~---~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          431 RMEEIVEGCTGALHILARD---VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHhcC---chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence                    44455555432   1234567889999999999999999999999988877653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.3e-32  Score=295.01  Aligned_cols=399  Identities=18%  Similarity=0.223  Sum_probs=326.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  160 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~  160 (518)
                      ++.+.+.+.  .+.+++.+..|+..|+. ++.... ....+++.|++|.|+++|++++ +..+..|+|+|.|++.+.+..
T Consensus        58 i~~Lv~~L~--~~~~~~~~~~A~~~L~~-Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           58 VSAIVRTMQ--NTNDVETARCTAGTLHN-LSHHRE-GLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHH--SCCCHHHHHHHHHHHHH-HTTSHH-HHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHh--cCCCHHHHHHHHHHHHH-HhcChh-hHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            345555554  23489999999999998 555543 5677888999999999998765 677889999999999887667


Q ss_pred             HHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhh
Q 010080          161 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLI  237 (518)
Q Consensus       161 ~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~  237 (518)
                      +..++  |++|.|+.+|.+ ++.+++..++.+|+|++..+++.+..+.+.|+++.|+.++.+. ...++..++.+|.||+
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs  211 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  211 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCChHHHHHHHCc-CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence            77775  799999999998 6788888888899999987899999999999999999999866 4677899999999999


Q ss_pred             cCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhh
Q 010080          238 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL  317 (518)
Q Consensus       238 ~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al  317 (518)
                      ...  . .+..+...|++|.|+.++.+++.+++..++|+|.+|+......   ....++++.|+.+| .+.+.+++..++
T Consensus       212 ~~~--~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL-~~~d~~v~~~a~  284 (644)
T 2z6h_A          212 VCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL-GSDDINVVTCAA  284 (644)
T ss_dssp             TCT--T-HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHT-TCSCHHHHHHHH
T ss_pred             cCc--c-cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHH-cCCCHHHHHHHH
Confidence            653  2 3455557899999999999999999999999999999754321   12247899999999 478889999999


Q ss_pred             hhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh--hhhHHHHHHHHHHhccCCH--HHHH-HHHhCCCHHHHH
Q 010080          318 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH--RVLKKEAAWVLSNIAAGSV--EHKQ-LIHSSEALALLL  392 (518)
Q Consensus       318 ~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~--~~i~~~a~~~Lsnl~~~~~--~~~~-~li~~~~i~~Li  392 (518)
                      ++|+|++.+++...+.+++.      |+++.|+.+|.+.+  +.++..|+++|+||+.+.+  ++.+ .+++.|++|.|+
T Consensus       285 ~aL~~L~~~~~~~~~~v~~~------g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~  358 (644)
T 2z6h_A          285 GILSNLTCNNYKNKMMVCQV------GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV  358 (644)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHc------CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHH
Confidence            99999998876666667654      59999999998643  6999999999999997543  3344 478899999999


Q ss_pred             HHhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC--------------------
Q 010080          393 HLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD--------------------  451 (518)
Q Consensus       393 ~lL~~~~-~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d--------------------  451 (518)
                      ++|.+.+ ..++++|+|+|+|++.++           +....+++.|+++.|+.+|...+                    
T Consensus       359 ~lL~~~~~~~v~~~a~~~L~nLa~~~-----------~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~  427 (644)
T 2z6h_A          359 KLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV  427 (644)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHHHTTSG-----------GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSS
T ss_pred             HHhCccCchHHHHHHHHHHHHHccCH-----------HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccc
Confidence            9998875 699999999999998742           12277889999999999998743                    


Q ss_pred             --HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080          452 --IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE  512 (518)
Q Consensus       452 --~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~  512 (518)
                        .+++..++.+|.++....   ..+..+.+.|+++.|..+..+++++++..|...|.++..+
T Consensus       428 ~~~~v~~~a~~aL~~La~~~---~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          428 RMEEIVEGCTGALHILARDV---HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             CHHHHHHHHHHHHHHHTTSH---HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHHhcCH---HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence              345667788888886532   3456788899999999999999999999999888776543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.1e-31  Score=295.90  Aligned_cols=397  Identities=18%  Similarity=0.223  Sum_probs=324.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  160 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~  160 (518)
                      ++.|.+.+.  .+.+++.+..|+..|++ ++.... ....+.+.|++|.|+++|++++ +.++.+|+|+|.|++.+.++.
T Consensus       194 i~~Lv~~L~--~~~d~~vr~~Aa~aL~~-Ls~~~~-~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          194 VSAIVRTMQ--NTNDVETARCTSGTLHN-LSHHRE-GLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHH--HCCCHHHHHHHHHHHHH-HHTSHH-HHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHc--CCCCHHHHHHHHHHHHH-HhCCch-hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            334444443  23489999999999999 555432 3667888999999999998765 678889999999999887777


Q ss_pred             HHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC-hhHHHHHHHHHHHhh
Q 010080          161 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-GSTVRTAAWALSNLI  237 (518)
Q Consensus       161 ~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nL~  237 (518)
                      +..+.  |++|.|+.+|.+ ++..+++.++.+|.+++..+++.+..+...|+++.|+.++.+.+ ......++.+|.+|+
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls  347 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  347 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence            77776  799999999988 78999999999999999888999999999999999999999764 556678899999999


Q ss_pred             cCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhh
Q 010080          238 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL  317 (518)
Q Consensus       238 ~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al  317 (518)
                      ...  . .+..+...|++|.|+.++.+.+++++..++|+|.+|+......   ....++++.|+.+| .+.+..++..|+
T Consensus       348 ~~~--~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL-~~~d~~vr~~A~  420 (780)
T 2z6g_A          348 VCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL-GSDDINVVTCAA  420 (780)
T ss_dssp             TST--T-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHT-TCSCHHHHHHHH
T ss_pred             cCh--H-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHH-cCCCHHHHHHHH
Confidence            653  2 3445556899999999999999999999999999999755321   12357899999998 578899999999


Q ss_pred             hhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-h-hhhHHHHHHHHHHhccCCHH---HHHHHHhCCCHHHHH
Q 010080          318 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-H-RVLKKEAAWVLSNIAAGSVE---HKQLIHSSEALALLL  392 (518)
Q Consensus       318 ~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~-~~i~~~a~~~Lsnl~~~~~~---~~~~li~~~~i~~Li  392 (518)
                      ++|++++.+++...+.+++.      |+++.|+.+|.+. + ..++..|+|+|+||+.+.++   ....+++.|++|.|+
T Consensus       421 ~aL~~L~~~~~~~~~~i~~~------g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~  494 (780)
T 2z6g_A          421 GILSNLTCNNYKNKMMVCQV------GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV  494 (780)
T ss_dssp             HHHHHHTSSCHHHHHHHHTT------THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHC------CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHH
Confidence            99999998877777777754      5999999999763 3 38999999999999875433   234678899999999


Q ss_pred             HHhcCCCh-hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC--------------------
Q 010080          393 HLLSTSPF-DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD--------------------  451 (518)
Q Consensus       393 ~lL~~~~~-~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d--------------------  451 (518)
                      .+|.+.+. .++++|+|+|+|++.++           +....+.+.|+++.|+.+|.+.+                    
T Consensus       495 ~lL~~~~~~~v~~~A~~aL~nLa~~~-----------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~  563 (780)
T 2z6g_A          495 KLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV  563 (780)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHHHHSSH-----------HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTC
T ss_pred             HHhcCCChHHHHHHHHHHHHHHhcCH-----------HHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhccc
Confidence            99988775 99999999999998742           33377889999999999998654                    


Q ss_pred             --HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          452 --IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       452 --~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                        .+++..++.+|.++...   ...+..+.+.|+++.|..|..+++++++..|...|.++.
T Consensus       564 ~~~~v~~~a~~aL~~La~~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          564 RMEEIVEACTGALHILARD---IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTTS---HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcC---hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence              34556677888877532   234566888999999999999999999999988877654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=1.8e-32  Score=272.74  Aligned_cols=266  Identities=19%  Similarity=0.171  Sum_probs=228.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcC----------CCCHHHHHHHHHHHHhhhCCChhhHHHHHh-c
Q 010080          142 QLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGE----------KSSSPVAEQCAWALGNVAGEGEEFRNVLLS-Q  208 (518)
Q Consensus       142 ~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~----------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~  208 (518)
                      .+..|+|+|.|++.+ ++.++.++  |++|.|+.+|..          +.++.+++.|+|+|.||+.+++..+..+.. .
T Consensus        48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            345799999999976 68888887  899999999952          124789999999999999988778888765 4


Q ss_pred             CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHHHHHHHhhcCCchh
Q 010080          209 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVYLSALSNVA  287 (518)
Q Consensus       209 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~  287 (518)
                      |+||+|+.+|.+++..+++.++|+|+||+.+.+ ...+..+...|++|.|+++| .+.+++++..++++|.+|+.+.++.
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC-HHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence            569999999999999999999999999997532 23455666789999999975 5678899999999999999855555


Q ss_pred             hhHHH-hcCchHHHHHHHccCCCc----cchhhhhhhhhhhhc---CCCcccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080          288 TSLLV-KSGVLQLLVERLATSNSL----QLLIPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV  359 (518)
Q Consensus       288 ~~~~~-~~g~~~~Lv~lL~~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~  359 (518)
                      ...+. ..|+++.|+.+|. +.+.    +++..++++|.|++.   ++++..+.++++      |++|.|+.+|.+++..
T Consensus       206 k~~i~~~~Gai~~Lv~lL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~------g~i~~Lv~lL~~~~~~  278 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN------NCLQTLLQHLKSHSLT  278 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTT-CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT------THHHHHHHHTTCSCHH
T ss_pred             hHHHHHhcCcHHHHHHHhc-cCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc------CCHHHHHHHHcCCChH
Confidence            55555 7899999999995 4433    478899999999986   677777888865      5999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080          360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       360 i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      ++++|+|+|+||+.+++++++.+++.|++|+|+++|.+++.+++++|+|+|.|++.+
T Consensus       279 v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          279 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            999999999999988999999999999999999999999999999999999999985

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1.1e-28  Score=234.62  Aligned_cols=242  Identities=24%  Similarity=0.355  Sum_probs=221.8

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      +.+|.|+.+|.+ ++++++..|+|+|++++.++++.+..+.+.|+++.|+.++.+++..++..++|+|.+|+...  ...
T Consensus         2 ~~i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~   78 (252)
T 4hxt_A            2 NDVEKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEA   78 (252)
T ss_dssp             CHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHH
T ss_pred             CcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHH
Confidence            568999999988 67999999999999999988889999999999999999999999999999999999999753  234


Q ss_pred             hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                      ...+...+++|.|+.++.+++++++..++|+|.+|+...++....+.+.|+++.|+.+| .++++.++..++++|+|++.
T Consensus        79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence            55566789999999999999999999999999999987888889999999999999999 47888999999999999998


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  405 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e  405 (518)
                      +++...+.+++.      |+++.|+.++.++++.++..|+|+|+|++.++++..+.+.+.|+++.|+++++++++++++.
T Consensus       158 ~~~~~~~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  231 (252)
T 4hxt_A          158 GPDEAIKAIVDA------GGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKE  231 (252)
T ss_dssp             SCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHH
T ss_pred             CCHHHHHHHHHC------cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHH
Confidence            877766677754      69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q 010080          406 VAYVLGNLCVSP  417 (518)
Q Consensus       406 A~~aL~nl~~~~  417 (518)
                      |+|+|+|++...
T Consensus       232 a~~~L~~l~~~~  243 (252)
T 4hxt_A          232 AQRALENIKSGG  243 (252)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999998754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=7e-28  Score=229.19  Aligned_cols=240  Identities=27%  Similarity=0.382  Sum_probs=216.5

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080          125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  202 (518)
Q Consensus       125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  202 (518)
                      |.+|.|+++|++++ +..+..|+|+|.+++.+.++....++  |++|.|+.+|.+ ++.++++.|+|+|+|++.++++.+
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHH
Confidence            67999999999876 77788999999999999887887777  799999999988 689999999999999999889999


Q ss_pred             HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      ..+.+.|+++.|+.++.+++..++..++|+|.+|+...  ......+...|++|.|++++.+++++++..++|+|++|+.
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999643  2334455568999999999999999999999999999999


Q ss_pred             CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080          283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  362 (518)
Q Consensus       283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~  362 (518)
                      +++...+.+.+.|+++.|+.+|. ++++.++..++++|+|++.+++...+.+++.      |+++.|+.++.++++.+++
T Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~------~~i~~L~~ll~~~~~~v~~  230 (252)
T 4hxt_A          158 GPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDA------GGVEVLQKLLTSTDSEVQK  230 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHT------THHHHHHHGGGCSCHHHHH
T ss_pred             CCHHHHHHHHHCcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------CCHHHHHHHHCCCcHHHHH
Confidence            87778889999999999999994 7888999999999999998877777777754      6999999999999999999


Q ss_pred             HHHHHHHHhccCC
Q 010080          363 EAAWVLSNIAAGS  375 (518)
Q Consensus       363 ~a~~~Lsnl~~~~  375 (518)
                      .|+|+|+|++...
T Consensus       231 ~a~~~L~~l~~~~  243 (252)
T 4hxt_A          231 EAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999998754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=2.3e-28  Score=233.00  Aligned_cols=239  Identities=27%  Similarity=0.422  Sum_probs=215.5

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      ..+.++..|.+ ++++++..|+|+|.++...+++.+..+.+.|++|.|+.++.+++..++..++|+|.+++.+.  ....
T Consensus        13 ~~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~   89 (252)
T 4db8_A           13 ELPQMTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQI   89 (252)
T ss_dssp             SHHHHHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHH
T ss_pred             hHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--HHHH
Confidence            58899999988 78999999999998877657788899999999999999999999999999999999999753  2344


Q ss_pred             hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080          247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  326 (518)
Q Consensus       247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  326 (518)
                      ..+...|++|.|+.+|.+++++++..++|+|.+|+.+.+.....+.+.|+++.|+.+| .+++..++..++++|+|++.+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            5556789999999999999999999999999999987666658889999999999999 477889999999999999988


Q ss_pred             CCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHH
Q 010080          327 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV  406 (518)
Q Consensus       327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA  406 (518)
                      ++.....+++.      |+++.|+.+|.++++.++..|+|+|+|++.++++..+.+++.|+++.|++++.+++++++++|
T Consensus       169 ~~~~~~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A  242 (252)
T 4db8_A          169 GNEQIQAVIDA------GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA  242 (252)
T ss_dssp             CHHHHHHHHHT------TCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred             ChHHHHHHHHC------CCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence            87777766654      699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 010080          407 AYVLGNLCV  415 (518)
Q Consensus       407 ~~aL~nl~~  415 (518)
                      +|+|+|++.
T Consensus       243 ~~~L~~l~~  251 (252)
T 4db8_A          243 QEALEKLQS  251 (252)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHHHhc
Confidence            999999974

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.96  E-value=5.3e-28  Score=234.26  Aligned_cols=226  Identities=15%  Similarity=0.175  Sum_probs=191.5

Q ss_pred             hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHH-HHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhh
Q 010080          267 EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE-RLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV  345 (518)
Q Consensus       267 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~-lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~  345 (518)
                      .+-+..|+..|.+++.+ .++...+.+.|+++.|+. +| .++++.++..|+++|||++.+++...+.+++.      |+
T Consensus        54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL-~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~------g~  125 (296)
T 1xqr_A           54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYL-EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL------GA  125 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT------TH
T ss_pred             HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC------CC
Confidence            35678899999999984 456677788999999999 88 58899999999999999999988888888865      59


Q ss_pred             HHHHHHHhcc-ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCc
Q 010080          346 IAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKP  424 (518)
Q Consensus       346 l~~L~~lL~~-~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~  424 (518)
                      +|.|+.+|.+ ++..+++.|+|+|+||+.+++...+.+++.|++|.|+.+|++++++++++|+|+|+|++.+.       
T Consensus       126 l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-------  198 (296)
T 1xqr_A          126 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-------  198 (296)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-------
Confidence            9999999986 47899999999999999999999999999999999999999999999999999999998742       


Q ss_pred             hhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCC---------cchhHHHhhchHHHHHHHhcCC-
Q 010080          425 KLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNH---------EGTKLVEREDGIDAMERFQFHE-  494 (518)
Q Consensus       425 ~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~---------~~~~~ie~~ggl~~l~~L~~~~-  494 (518)
                         .++++.+++.|++++|+.+|.++|++++..++.+|.+|+...+..         ....++++     .++.||.++ 
T Consensus       199 ---~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~  270 (296)
T 1xqr_A          199 ---PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEE  270 (296)
T ss_dssp             ---GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGG
T ss_pred             ---hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHH
Confidence               256789999999999999999999999999999999999763210         01122222     477788776 


Q ss_pred             CHHHHHHHHHHHHhhcCccCC
Q 010080          495 NEDLRNMANGLVDKYFGEDYG  515 (518)
Q Consensus       495 ~~~i~~~a~~il~~~f~~~~~  515 (518)
                      +.++|++|..|+++||+++++
T Consensus       271 ~~e~~~~~~~il~~~f~~~~~  291 (296)
T 1xqr_A          271 YQEELEFCEKLLQTCFSSPAD  291 (296)
T ss_dssp             GHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHcCCCCC
Confidence            899999999999999976543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1.1e-27  Score=228.22  Aligned_cols=238  Identities=25%  Similarity=0.412  Sum_probs=211.5

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080          125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  202 (518)
Q Consensus       125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  202 (518)
                      ...|.++..|++++ +..+..|+|+|.++.+..++....++  |++|.|+.+|.+ ++++++..|+|+|+|++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHH
Confidence            45888999999876 45778999999988876666677776  799999999998 679999999999999999899999


Q ss_pred             HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      ..+.+.|++|.|+.++.+++..++..++|+|.||+.+.  ......+...|++|.|+++|.+++++++..++|+|.+|+.
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC--chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999763  2222455678999999999999999999999999999999


Q ss_pred             CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080          283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  362 (518)
Q Consensus       283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~  362 (518)
                      ++++..+.+++.|+++.|+.+|. ++++.++..++++|+|++.+++.....+++.      |+++.|+.++.+.++.+++
T Consensus       168 ~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------g~i~~L~~ll~~~~~~v~~  240 (252)
T 4db8_A          168 GGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEA------GALEKLEQLQSHENEKIQK  240 (252)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHTTTTCSSSHHHH
T ss_pred             CChHHHHHHHHCCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC------CcHHHHHHHhCCCCHHHHH
Confidence            88888888999999999999994 7788999999999999998887777777754      6999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 010080          363 EAAWVLSNIAA  373 (518)
Q Consensus       363 ~a~~~Lsnl~~  373 (518)
                      .|+|+|+||+.
T Consensus       241 ~A~~~L~~l~~  251 (252)
T 4db8_A          241 EAQEALEKLQS  251 (252)
T ss_dssp             THHHHHHTTC-
T ss_pred             HHHHHHHHHhc
Confidence            99999999975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.2e-25  Score=233.20  Aligned_cols=322  Identities=12%  Similarity=0.123  Sum_probs=249.6

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCCCCCcHH-HHH-HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH-------
Q 010080           89 AYHGKGAMQKRVNALRELRRLLSRFEFPPIE-TAL-KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE-------  159 (518)
Q Consensus        89 ~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~-~~i-~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~-------  159 (518)
                      +.+.+++.+.+..|+..|.. ++..+  .+. .+. +.|.++.|+.+++........+.++.+|.|++...+.       
T Consensus       341 ~~L~~~~~~~~~~AvEgLaY-LSl~~--~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~  417 (778)
T 3opb_A          341 NAISRRIVPKVEMSVEALAY-LSLKA--SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXX  417 (778)
T ss_dssp             HHTTTCCHHHHHHHHHHHHH-HTTSS--HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-
T ss_pred             HHHhcCCccHHHHHHHHHHH-HhCCH--HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhh
Confidence            34456677778999999999 66643  333 333 4778999999998533345779999999999963321       


Q ss_pred             -------------------------------HHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH
Q 010080          160 -------------------------------ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL  206 (518)
Q Consensus       160 -------------------------------~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~  206 (518)
                                                     .+..++  |++|.|+.++.+ +++.++++|+|+|+||+.+ +++|..++
T Consensus       418 l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S-~s~~~re~A~~aL~nLS~d-~~~R~~lv  495 (778)
T 3opb_A          418 XXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN-LSPNCKQQVVRIIYNITRS-KNFIPQLA  495 (778)
T ss_dssp             -----------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG-SCHHHHHHHHHHHHHHHTS-GGGHHHHH
T ss_pred             hhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence                                           233444  799999999988 7899999999999999985 89999999


Q ss_pred             hcCChhHHHhhhCCCChh---HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-CChh------------H-
Q 010080          207 SQGALPPLARMMLPNKGS---TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-ADEE------------L-  269 (518)
Q Consensus       207 ~~g~i~~L~~ll~~~~~~---~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~-~d~~------------v-  269 (518)
                      ++|++++|+.++.+....   .+.+|+++|.+|+...+|...+..-...+++|.|+.+|.. ++..            + 
T Consensus       496 qqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~  575 (778)
T 3opb_A          496 QQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD  575 (778)
T ss_dssp             HTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHH
T ss_pred             HCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHH
Confidence            999999999999876433   8899999999999765433211000113899999999983 2211            2 


Q ss_pred             HHHHHHHHHHhhcCCc----hhhhHHHhc-CchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhh
Q 010080          270 TTEVAWVVVYLSALSN----VATSLLVKS-GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ  344 (518)
Q Consensus       270 ~~~a~~~L~~L~~~~~----~~~~~~~~~-g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~  344 (518)
                      ..+|+.||.||+..++    +..+.++.. |+++.|.++|. +++..++..|+.+++|++...+...+.+.+.+.....+
T Consensus       576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~-s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~  654 (778)
T 3opb_A          576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML-DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR  654 (778)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence            6699999999998753    335667774 99999999985 67888999999999999986643223444332111123


Q ss_pred             hHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHHHHHHhcC--CChhHHHHHHHHHHHhcCC
Q 010080          345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLST--SPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       345 ~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~Li~lL~~--~~~~v~~eA~~aL~nl~~~  416 (518)
                      -++.|+.++..++..+|+.|+|+|+|++.+.+..++.+++. ++++.++.++++  .+.+++..++.++.|++..
T Consensus       655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999999998888888999987 799999999988  8999999999999999853

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=5.3e-24  Score=196.93  Aligned_cols=199  Identities=24%  Similarity=0.334  Sum_probs=181.7

Q ss_pred             hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcc
Q 010080          251 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST  330 (518)
Q Consensus       251 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~  330 (518)
                      ..+..|.|..+|.++|++++..++|+|.+++.++++..+.+++.|+++.|+.+| .++++.++..|+++|+|++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            358899999999999999999999999999988888889999999999999999 4778899999999999999888777


Q ss_pred             cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHH
Q 010080          331 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  410 (518)
Q Consensus       331 ~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL  410 (518)
                      .+.+++.      |+++.|+.+|.++++.++..|+|+|+|++.++++..+.+++.|++|.|+++|.+++..++..|+|+|
T Consensus        89 ~~~i~~~------g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL  162 (210)
T 4db6_A           89 IQAVIDA------GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL  162 (210)
T ss_dssp             HHHHHHT------TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHC------CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence            7777754      6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHH
Q 010080          411 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL  466 (518)
Q Consensus       411 ~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il  466 (518)
                      .|++...          .+....+.+.|+++.|+.++.+++++++..++.+|.++.
T Consensus       163 ~~l~~~~----------~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          163 SNIASGG----------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHTSC----------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHcCC----------cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            9999742          356678889999999999999999999999999999885

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=5.1e-24  Score=197.07  Aligned_cols=200  Identities=27%  Similarity=0.392  Sum_probs=179.9

Q ss_pred             hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCch
Q 010080          207 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV  286 (518)
Q Consensus       207 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~  286 (518)
                      ..|..++|..++++++..++..++|+|.+++.+.  ......+...|++|.|+++|.+++++++..++|+|.+|+.++++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            4578899999999999999999999999999653  23344556789999999999999999999999999999987888


Q ss_pred             hhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHH
Q 010080          287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW  366 (518)
Q Consensus       287 ~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~  366 (518)
                      ..+.+++.|+++.|+.+| .++++.++..|+++|+|++.+++...+.+++.      |+++.|+.++.++++.++..|+|
T Consensus        88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~  160 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDA------GALPALVQLLSSPNEQILQEALW  160 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc------CcHHHHHHHHcCCCHHHHHHHHH
Confidence            889999999999999999 57788999999999999998887777777754      69999999999999999999999


Q ss_pred             HHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          367 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       367 ~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      +|+|++.++++..+.+.+.|+++.|++++.+++.++++.|+|+|.+++.
T Consensus       161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            9999999988999999999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.91  E-value=1.9e-23  Score=202.23  Aligned_cols=181  Identities=17%  Similarity=0.191  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHhc--CChHHHHH-hhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh
Q 010080          142 QLLEAAWCLTNIAAGKQEETKALL--PALPLLIA-HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM  218 (518)
Q Consensus       142 ~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~-lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll  218 (518)
                      .+..|+..|.+++...+ ....+.  |++|.|+. +|.+ +++.++++|+|+|+|++.+++.+++.+++.|++|+|+.+|
T Consensus        56 ~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           56 EREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            44569999999997544 444443  89999999 9987 7899999999999999999999999999999999999999


Q ss_pred             CC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCch
Q 010080          219 LP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVL  297 (518)
Q Consensus       219 ~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~  297 (518)
                      .+ ++..+++.|+|+|+|||++..  +..+.+...+++|.|+.+|.+++..++..++|+|+||+.++++.++.+++.|++
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~--~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQE--AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCc--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence            95 488999999999999998742  333444567999999999999999999999999999999888899999999999


Q ss_pred             HHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080          298 QLLVERLATSNSLQLLIPVLRSLGNLVAGD  327 (518)
Q Consensus       298 ~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  327 (518)
                      +.|+.+| .+++..++.+++++|+||+.+.
T Consensus       212 ~~Lv~LL-~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          212 QQLVALV-RTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             HHHHHHH-TSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHH-cCCChhHHHHHHHHHHHHHhCC
Confidence            9999999 5789999999999999999884

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.8e-22  Score=213.85  Aligned_cols=392  Identities=16%  Similarity=0.176  Sum_probs=290.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHh
Q 010080           95 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAH  174 (518)
Q Consensus        95 ~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~l  174 (518)
                      +......++..|.. .+.++  +....|..+.+|.|.+.++.   +..+..|+-+|..+.+........+....+.+..+
T Consensus       269 ~~~~~~a~L~lLsa-ACi~~--~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~  342 (778)
T 3opb_A          269 DLQFTKELLRLLSS-ACIDE--TMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA  342 (778)
T ss_dssp             CHHHHHHHHHHHHH-HCCSH--HHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH-HhCCc--HHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence            33333444444433 55543  23566678899999999975   34555688888887754332222223477889999


Q ss_pred             hcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc-CChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCC---------
Q 010080          175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-GALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPK---------  243 (518)
Q Consensus       175 L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~---------  243 (518)
                      |.+ ++.+-+..|++.|+.++.+ ++.|..+... |.++.|+.++.. .+..+...++.+|.||+......         
T Consensus       343 L~~-~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~  420 (778)
T 3opb_A          343 ISR-RIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXX  420 (778)
T ss_dssp             TTT-CCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC----
T ss_pred             Hhc-CCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhh
Confidence            987 5666699999999999984 5677766654 669999999995 68899999999999999854310         


Q ss_pred             ---------c------------------hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCc
Q 010080          244 ---------P------------------ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV  296 (518)
Q Consensus       244 ---------~------------------~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~  296 (518)
                               |                  ....+...|++|.|+.++.++++.++..++|+|.+|+. +++.+..+++.|+
T Consensus       421 Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGa  499 (778)
T 3opb_A          421 XXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGA  499 (778)
T ss_dssp             --------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTH
T ss_pred             hhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCC
Confidence                     0                  13455678999999999999999999999999999996 5778899999999


Q ss_pred             hHHHHHHHccCCCcc--chhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-Chhh------------h-
Q 010080          297 LQLLVERLATSNSLQ--LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRV------------L-  360 (518)
Q Consensus       297 ~~~Lv~lL~~~~~~~--v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-~~~~------------i-  360 (518)
                      ++.|+.+|.......  .+..|+++|.+++...+...  ++. |.. ..+++++|+.+|.. +...            + 
T Consensus       500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~-~~~-~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~  575 (778)
T 3opb_A          500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFK-KYS-ALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD  575 (778)
T ss_dssp             HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSS-SSC-STTHHHHHHHTSCCSSSCSSCC---CCCCCHHH
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcC-CCc-cccchHHHHHHcCCCCCcccccccccccccHHH
Confidence            999999995332222  68899999999995543222  110 100 12699999999983 2111            2 


Q ss_pred             HHHHHHHHHHhccCC----HHHHHHHHhC-CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHH-HHH
Q 010080          361 KKEAAWVLSNIAAGS----VEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHL-VSL  434 (518)
Q Consensus       361 ~~~a~~~Lsnl~~~~----~~~~~~li~~-~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~-~~l  434 (518)
                      +.+|+.+|.||+...    ++..+.++.. |++|.|.++|.+.+..+|++|+|+|+|++.+++           .+ +.+
T Consensus       576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-----------~i~~k~  644 (778)
T 3opb_A          576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-----------TIAAKF  644 (778)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-----------GTGGGT
T ss_pred             HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-----------HHHHHH
Confidence            789999999999875    3456778886 999999999999999999999999999997532           11 122


Q ss_pred             Hh------cCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC--CCHHHHHHHHHHH
Q 010080          435 VG------RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH--ENEDLRNMANGLV  506 (518)
Q Consensus       435 ~~------~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~--~~~~i~~~a~~il  506 (518)
                      .+      .+.++.|+.++...|.+++..|.++|.++....+. ....+++..+|++.+..+...  ++++++.++..++
T Consensus       645 ~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~-ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l  723 (778)
T 3opb_A          645 FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL-IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLF  723 (778)
T ss_dssp             SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH-HHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            22      12488999999999999999999999999643221 123455556899988777666  8999999999999


Q ss_pred             HhhcC
Q 010080          507 DKYFG  511 (518)
Q Consensus       507 ~~~f~  511 (518)
                      ...+.
T Consensus       724 ~NL~~  728 (778)
T 3opb_A          724 FGLFE  728 (778)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            98886

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.87  E-value=2.1e-21  Score=180.07  Aligned_cols=196  Identities=16%  Similarity=0.108  Sum_probs=165.8

Q ss_pred             CHHHHHHHhcCCCC-hHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080          126 AIPVLVQCLAFGSP-DEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  202 (518)
Q Consensus       126 ~ip~Lv~~L~~~~~-~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  202 (518)
                      .+|.||++|.++++ ...|..|+|+|.+++.++++.+..++  |+||.|+.+|.+ +++++++.|+|+|.||+.+++++|
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence            68999999998764 25678899999999998888888887  799999999988 789999999999999999889999


Q ss_pred             HHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc----------------cC
Q 010080          203 NVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK----------------RA  265 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~----------------~~  265 (518)
                      ..+.+.|+||+|+.+|. +.+.+++++++.+|+||+..+  .. +..+. .+++|.|+.++.                ..
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~--~~-k~~i~-~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND--KL-KNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG--GG-HHHHH-HHHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh--hh-HHHHH-hccHHHHHHHHhccccCCcccccccccccc
Confidence            99999999999999998 568999999999999998653  22 33333 468999988763                12


Q ss_pred             ChhHHHHHHHHHHHhhcCCchhhhHHHhc-CchHHHHHHHcc-----CCCccchhhhhhhhhhhhcC
Q 010080          266 DEELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAG  326 (518)
Q Consensus       266 d~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~  326 (518)
                      +++++.++.++|.||+..+++..+.+.+. |+++.|+.++..     ..+.+.++.++.+|.|++..
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            56899999999999998777888888875 778999999862     13556788999999999854

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.85  E-value=9.9e-21  Score=175.53  Aligned_cols=192  Identities=16%  Similarity=0.188  Sum_probs=156.1

Q ss_pred             HHHHhcCCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080           86 SAVAYHGKGAM--QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  163 (518)
Q Consensus        86 ~~l~~~~s~~~--~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~  163 (518)
                      .+++.++++|+  +.+..|+..++. ++....+....+++.|+||.||++|++++ +.+|.+|+|+|+|++.++++++..
T Consensus        12 ~lV~lL~s~~~~~~~q~~Aa~~l~~-L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           12 RAVSMLEADHMLPSRISAAATFIQH-ECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHTCCSSCCCHHHHHHHHHHHHH-HHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHH-HHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence            34445568888  888999999988 55444456678889999999999999865 778899999999999998999998


Q ss_pred             hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC----------------CCChhH
Q 010080          164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML----------------PNKGST  225 (518)
Q Consensus       164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~----------------~~~~~~  225 (518)
                      ++  |+||.|+.+|.++.+.+++++|+.+|.|++. .+.+|..+.+. ++|+|+.++.                ..+..+
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence            88  8999999999854689999999999999998 56778888774 6999998763                125689


Q ss_pred             HHHHHHHHHHhhcCCCCCchhhHHHh-hchHHHHHHHhcc------CChhHHHHHHHHHHHhhcC
Q 010080          226 VRTAAWALSNLIKGPDPKPATELIKV-DGLLDAILRHLKR------ADEELTTEVAWVVVYLSAL  283 (518)
Q Consensus       226 ~~~a~~~L~nL~~~~~~~~~~~~i~~-~~~l~~L~~lL~~------~d~~v~~~a~~~L~~L~~~  283 (518)
                      +++++++|.||+... + ..+..+.. .|+++.|+.+++.      .|...++++..+|.||+..
T Consensus       168 ~~na~~~L~nLss~~-~-~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAG-A-DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHTTSC-H-HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhcCC-H-HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            999999999999653 2 23444543 4788999999984      2568899999999999863

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.73  E-value=1.1e-16  Score=178.74  Aligned_cols=350  Identities=13%  Similarity=0.107  Sum_probs=250.3

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH---
Q 010080           87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA---  163 (518)
Q Consensus        87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~---  163 (518)
                      +++.+.+.++..+..+...+..+.+.+....+     .+++|.|++.+.+++ ...+..|+++|..++...+.....   
T Consensus        95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~  168 (852)
T 4fdd_A           95 CLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVL  168 (852)
T ss_dssp             HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSS
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhh
Confidence            34456778888899999999997776522211     467899999998654 445556999999998654433221   


Q ss_pred             ---hcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 010080          164 ---LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP  240 (518)
Q Consensus       164 ---v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~  240 (518)
                         +-..+|.|+.++.+ ++..++..|+++|+++....+..-. -.-...++.|..++.+++..+++.++++|..++...
T Consensus       169 ~~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~-~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~  246 (852)
T 4fdd_A          169 DRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALM-LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR  246 (852)
T ss_dssp             SSCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHH-TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence               11368888888886 7899999999999998864332110 011246788888888889999999999999999753


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh---cCchHHHHHHHc----------cC
Q 010080          241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK---SGVLQLLVERLA----------TS  307 (518)
Q Consensus       241 ~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~---~g~~~~Lv~lL~----------~~  307 (518)
                       +......  ..++++.++.++.+.+++++..+++++..++.... ..+ .+.   ..+++.++..+.          .+
T Consensus       247 -~~~~~~~--l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d  321 (852)
T 4fdd_A          247 -MDRLLPH--MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGD  321 (852)
T ss_dssp             -HHHHGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred             -HHHHHHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence             2211112  23688888999999999999999999999986431 111 111   234555655551          12


Q ss_pred             -----------CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080          308 -----------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV  376 (518)
Q Consensus       308 -----------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~  376 (518)
                                 .+..++..+..+|+.++...+.   .++       ..+++.+..++.++++.+|..|+|++++++.+..
T Consensus       322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-------~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~  391 (852)
T 4fdd_A          322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-------PHILPLLKELLFHHEWVVKESGILVLGAIAEGCM  391 (852)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHGG---GGH-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHhccH---HHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch
Confidence                       2335677888899988865432   222       2588899999999999999999999999999887


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHH
Q 010080          377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR  456 (518)
Q Consensus       377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~  456 (518)
                      +.....+ .+++|.++..+++.++.||..|+|+|++++........          .-.-.++++.|+..|.++++.++.
T Consensus       392 ~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----------~~~~~~ll~~L~~~L~d~~~~vr~  460 (852)
T 4fdd_A          392 QGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP----------DTYLKPLMTELLKRILDSNKRVQE  460 (852)
T ss_dssp             HHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT----------TTTHHHHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH----------HHHHHHHHHHHHHHHhCCCHHHHH
Confidence            6555433 35899999999999999999999999999753100000          001124688899999889999999


Q ss_pred             HHHHHHHHHHccCC
Q 010080          457 LGLQFMELVLRGMP  470 (518)
Q Consensus       457 ~~l~~l~~il~~~~  470 (518)
                      .++.+|.++++.+.
T Consensus       461 ~a~~aL~~l~~~~~  474 (852)
T 4fdd_A          461 AACSAFATLEEEAC  474 (852)
T ss_dssp             HHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.72  E-value=3.9e-16  Score=150.72  Aligned_cols=259  Identities=14%  Similarity=0.082  Sum_probs=201.1

Q ss_pred             HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080          121 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  200 (518)
Q Consensus       121 ~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~  200 (518)
                      ....+.++.|+..|..++ +..+..|+++|.++..  +       ++++.|+.+|.+ +++.++..|+|+|+++......
T Consensus        19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~-------~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q-------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H-------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c-------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhcccccc
Confidence            345778999999998654 5677789999999873  1       257889999987 7899999999999999753322


Q ss_pred             hHHHHHhcCChhHHH-hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHH
Q 010080          201 FRNVLLSQGALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVY  279 (518)
Q Consensus       201 ~r~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~  279 (518)
                      ...      .++.|. .++.+++..++..++|+|.+++... +.      ....++|.|..++.++++.++..++++|.+
T Consensus        88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-~~------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~  154 (280)
T 1oyz_A           88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKN-PI------YSPKIVEQSQITAFDKSTNVRRATAFAISV  154 (280)
T ss_dssp             HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-GG------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-Cc------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence            111      233343 2456778999999999999998542 11      124678999999999999999999999998


Q ss_pred             hhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080          280 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV  359 (518)
Q Consensus       280 L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~  359 (518)
                      +..           .+.++.|+.+| .++++.++..++++|+.+...+               ..+++.|..++.++++.
T Consensus       155 ~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~---------------~~~~~~L~~~l~d~~~~  207 (280)
T 1oyz_A          155 IND-----------KATIPLLINLL-KDPNGDVRNWAAFAININKYDN---------------SDIRDCFVEMLQDKNEE  207 (280)
T ss_dssp             C--------------CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCC---------------HHHHHHHHHHTTCSCHH
T ss_pred             cCC-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHhhccCc---------------HHHHHHHHHHhcCCCHH
Confidence            764           24789999988 5788899999999999984222               25889999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc
Q 010080          360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC  439 (518)
Q Consensus       360 i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~  439 (518)
                      +|..|+++|+++.           +...+|.|+..+++++  ++..|+++|..+..                     ..+
T Consensus       208 vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------------~~~  253 (280)
T 1oyz_A          208 VRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------------KTL  253 (280)
T ss_dssp             HHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------------GGG
T ss_pred             HHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------------hhh
Confidence            9999999999985           2347899999998755  89999999999832                     136


Q ss_pred             hHHHHHhhcc-CCHHHHHHHHHHHHH
Q 010080          440 LSGFIDLVRS-ADIEAARLGLQFMEL  464 (518)
Q Consensus       440 i~~L~~lL~~-~d~~~~~~~l~~l~~  464 (518)
                      ++.|..++.. ++++++..+++++.+
T Consensus       254 ~~~L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          254 LPVLDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             hHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence            7888888864 677888777776653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.70  E-value=5.7e-16  Score=172.99  Aligned_cols=396  Identities=13%  Similarity=0.085  Sum_probs=273.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080           83 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK  162 (518)
Q Consensus        83 ~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~  162 (518)
                      -+..++..+.+.++..+..|...|++.+...- ..+..-.+..+-+.+++.|..+ ++.++..++.+++.|+.....  .
T Consensus        49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w-~~~~~~~~~~ik~~ll~~l~~~-~~~vr~~~a~~i~~ia~~~~~--~  124 (852)
T 4fdd_A           49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF-QNFPNGVTDFIKSECLNNIGDS-SPLIRATVGILITTIASKGEL--Q  124 (852)
T ss_dssp             HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG-GGCCHHHHHHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHHHTTT--T
T ss_pred             HHHHHHhccCCCChHHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCc--c
Confidence            34445555467889999999999999886531 1122223445666777777644 356667799999999964321  1


Q ss_pred             HhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH----hcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080          163 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL----SQGALPPLARMMLPNKGSTVRTAAWALSNLIK  238 (518)
Q Consensus       163 ~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  238 (518)
                      ..-+.+|.|+..+.+ ++..+++.++++|+.++.+.+..-..-.    -..++|.++.++++++..++..|+++|.+++.
T Consensus       125 ~wp~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~  203 (852)
T 4fdd_A          125 NWPDLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII  203 (852)
T ss_dssp             TCTTHHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred             ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            222578999999987 7899999999999999975433211100    12467888888888899999999999999886


Q ss_pred             CCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhh
Q 010080          239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR  318 (518)
Q Consensus       239 ~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~  318 (518)
                      .. +......  ...+++.+..++.+++++++..++++|..++...++.....+. ++++.++..+ .+.+..++..|+.
T Consensus       204 ~~-~~~~~~~--~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e  278 (852)
T 4fdd_A          204 SR-TQALMLH--IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACE  278 (852)
T ss_dssp             TT-CHHHHTS--HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHH
T ss_pred             cc-cHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHH
Confidence            53 2111111  2368889999999999999999999999999855544333222 4677777777 4678889999999


Q ss_pred             hhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-----------c-----------ChhhhHHHHHHHHHHhccCCH
Q 010080          319 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-----------S-----------EHRVLKKEAAWVLSNIAAGSV  376 (518)
Q Consensus       319 ~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-----------~-----------~~~~i~~~a~~~Lsnl~~~~~  376 (518)
                      ++..++.....  ...+..   .-..++|.++..+.           .           ....+|+.|+.+++.++...+
T Consensus       279 ~l~~l~~~~~~--~~~~~~---~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~  353 (852)
T 4fdd_A          279 FWLTLAEQPIC--KDVLVR---HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR  353 (852)
T ss_dssp             HHHHHTTSTTH--HHHHTT---THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHhcchhH--HHHHHH---HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc
Confidence            99998754311  111110   12357888888772           2           234678999999999876432


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHH
Q 010080          377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR  456 (518)
Q Consensus       377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~  456 (518)
                      +.   ++. .++|.+.+.+.+.+..+|..|+++|++++.+.      +    +.+.. .-.++++.++.+|.++++.+..
T Consensus       354 ~~---~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~------~----~~~~~-~l~~~l~~l~~~l~d~~~~Vr~  418 (852)
T 4fdd_A          354 DE---LLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGC------M----QGMIP-YLPELIPHLIQCLSDKKALVRS  418 (852)
T ss_dssp             GG---GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT------H----HHHGG-GHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HH---HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc------h----HHHHH-HHHHHHHHHHHHcCCCCHHHHH
Confidence            21   222 36788888889999999999999999998742      1    22221 1235789999999999999999


Q ss_pred             HHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          457 LGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       457 ~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                      .+++++.++....+.......  -.+.++.|.....++++.++..|...+..+.
T Consensus       419 ~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~  470 (852)
T 4fdd_A          419 ITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLE  470 (852)
T ss_dssp             HHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            999999988764321111111  1234566666667789999999988887654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.69  E-value=4.2e-16  Score=166.61  Aligned_cols=363  Identities=16%  Similarity=0.143  Sum_probs=250.3

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC
Q 010080           87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP  166 (518)
Q Consensus        87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~  166 (518)
                      +.+.++++|+..+-.|+..+.++-    .+.+    ...++|.+.++|.++ ++.++..|++++.+++...++.... -+
T Consensus        91 l~kdL~~~n~~ir~~AL~~L~~i~----~~~~----~~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~~~~~-~~  160 (591)
T 2vgl_B           91 FVKDCEDPNPLIRALAVRTMGCIR----VDKI----TEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQMVED-QG  160 (591)
T ss_dssp             HGGGSSSSSHHHHHHHHHHHHTCC----SGGG----HHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCCCHHH-HH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHcCC----hHHH----HHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChhhccc-cc
Confidence            334567888888887877666531    2322    134678899999854 4677788999999999766543221 14


Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      .+|.|..+|.+ +++.|+..|+++|+.++.++++.+...+..+.++.|+..+...++-.+...+.++..++..    ...
T Consensus       161 ~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~----~~~  235 (591)
T 2vgl_B          161 FLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK----DDR  235 (591)
T ss_dssp             HHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC----SHH
T ss_pred             HHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC----ChH
Confidence            78999999986 7899999999999999987654321111223466677777666777777777888777632    112


Q ss_pred             hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC---CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhh
Q 010080          247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL---SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL  323 (518)
Q Consensus       247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl  323 (518)
                      +   ...+++.+..++++.++.|+..|+|++.++...   +++..+.+. ..+.+.|+.++  +++++++..++++|+.+
T Consensus       236 ~---~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~--~~d~~vr~~aL~~l~~i  309 (591)
T 2vgl_B          236 E---AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL--SGEPEVQYVALRNINLI  309 (591)
T ss_dssp             H---HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT--TSCHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence            1   357888999999999999999999999999852   233444332 34567777654  47889999999999999


Q ss_pred             hcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHH
Q 010080          324 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIK  403 (518)
Q Consensus       324 ~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~  403 (518)
                      +...+......+           ..+. .+.+.+..||.+|++++.+++...  +++.     +++.|...+.+.+.+++
T Consensus       310 ~~~~p~~~~~~~-----------~~~~-~~~~d~~~Ir~~al~~L~~l~~~~--nv~~-----iv~~L~~~l~~~d~~~r  370 (591)
T 2vgl_B          310 VQKRPEILKQEI-----------KVFF-VKYNDPIYVKLEKLDIMIRLASQA--NIAQ-----VLAELKEYATEVDVDFV  370 (591)
T ss_dssp             HHHCCSTTTTCT-----------TTTS-CCTTSCHHHHHHHHHHHHHTCCSS--THHH-----HHHHHHHHTTSSCHHHH
T ss_pred             HHhChHHHHHHH-----------Hhhe-eccCChHHHHHHHHHHHHHHCChh--hHHH-----HHHHHHHHHhcCCHHHH
Confidence            976554332221           1111 122334799999999999997543  3332     56678888999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhch
Q 010080          404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDG  483 (518)
Q Consensus       404 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~gg  483 (518)
                      ++++++|++++...      |    ..     ...+++.|+++|...+..+...++.++..|++..++.       ...+
T Consensus       371 ~~~v~aI~~la~~~------~----~~-----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-------~~~~  428 (591)
T 2vgl_B          371 RKAVRAIGRCAIKV------E----QS-----AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-------YESI  428 (591)
T ss_dssp             HHHHHHHHHHHTTC------H----HH-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-------CCTT
T ss_pred             HHHHHHHHHHHHhC------h----hH-----HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-------HHHH
Confidence            99999999998742      1    11     1346889999999988888888888899988765431       1223


Q ss_pred             HHHHHH-HhcCCCHHHHHHHHHHHHhhcC
Q 010080          484 IDAMER-FQFHENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       484 l~~l~~-L~~~~~~~i~~~a~~il~~~f~  511 (518)
                      +..|.. +.....+++...+.++|-+|-.
T Consensus       429 v~~L~~~l~~~~~~~~~~~~~wilGey~~  457 (591)
T 2vgl_B          429 IATLCENLDSLDEPDARAAMIWIVGEYAE  457 (591)
T ss_dssp             HHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence            333422 3334566677777777776643

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.68  E-value=5e-15  Score=157.90  Aligned_cols=342  Identities=10%  Similarity=0.096  Sum_probs=247.1

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hh
Q 010080          124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF  201 (518)
Q Consensus       124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~  201 (518)
                      ..++|.+..+++.++ ...+..|+.+|..++.....  .... ..+|.++.++.+ ++++++..|+++|+.++.... ..
T Consensus       241 ~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~  316 (588)
T 1b3u_A          241 ALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhChhh
Confidence            346666666665433 44555577777777642111  1112 468888899887 789999999999999986432 22


Q ss_pred             HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080          202 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS  281 (518)
Q Consensus       202 r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~  281 (518)
                      +.......++|.+..++++++..++..++|+|..++..-.    .+.. ...++|.+..++.+++++++..++.+|..+.
T Consensus       317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~----~~~~-~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~  391 (588)
T 1b3u_A          317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG----KDNT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVN  391 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC----HHHH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh----HhHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence            2223344567888899999999999999999999985421    1111 2468899999999999999999999999888


Q ss_pred             cCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhH
Q 010080          282 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK  361 (518)
Q Consensus       282 ~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~  361 (518)
                      ......   .....+++.+..++ .+.+..++..++.+++.++..-...   ..      ...++|.+..++.++++.+|
T Consensus       392 ~~~~~~---~~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~---~~------~~~l~~~l~~~l~d~~~~Vr  458 (588)
T 1b3u_A          392 EVIGIR---QLSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLGVE---FF------DEKLNSLCMAWLVDHVYAIR  458 (588)
T ss_dssp             HHSCHH---HHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCGG---GC------CHHHHHHHHHGGGCSSHHHH
T ss_pred             HhcCHH---HHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHcCHH---HH------HHHHHHHHHHHhcCCcHHHH
Confidence            632211   12245678888877 4778889999999999987532211   11      13588999999999999999


Q ss_pred             HHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080          362 KEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  440 (518)
Q Consensus       362 ~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  440 (518)
                      ..|+.+++.++.. .++.    .-..++|.|..++.+.++.+|..++++++.++...           .  ....-..++
T Consensus       459 ~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~-----------~--~~~~~~~~~  521 (588)
T 1b3u_A          459 EAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-----------G--QDITTKHML  521 (588)
T ss_dssp             HHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHTH
T ss_pred             HHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc-----------C--HHHHHHHHH
Confidence            9999999999764 2221    12348899999889999999999999999997521           0  111234588


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080          441 SGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  509 (518)
Q Consensus       441 ~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~  509 (518)
                      +.|..++.++++.+...+++++..+......    .. .....+..|..+..+++++++..|...+...
T Consensus       522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----~~-~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l  585 (588)
T 1b3u_A          522 PTVLRMAGDPVANVRFNVAKSLQKIGPILDN----ST-LQSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH----HH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHhhCCCCCchHHHHHHHHHHHHHHHhch----hh-hHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence            9999999999999999999999999865421    11 1234456677888999999999999988765

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.68  E-value=4.6e-14  Score=146.08  Aligned_cols=321  Identities=15%  Similarity=0.195  Sum_probs=243.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCC
Q 010080           79 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-SPDEQLLEAAWCLTNIAAGK  157 (518)
Q Consensus        79 ~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~-~~~~~~~eA~~~L~nia~~~  157 (518)
                      .+++.|..-++  ++.-.+.+..|+..|+.+ ++. .+   ..+.++++|.|+..|+.+ ++.+....++..|.++.+..
T Consensus        21 etI~~L~~Rl~--~~tl~eDRR~Av~~Lk~~-sk~-y~---~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~   93 (651)
T 3grl_A           21 ETIQKLCDRVA--SSTLLDDRRNAVRALKSL-SKK-YR---LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND   93 (651)
T ss_dssp             HHHHHHHHHHH--HCCSHHHHHHHHHHHHHT-TTT-TT---THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHh--hccchhHHHHHHHHHHHH-HHH-hH---HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence            45667777666  466789999999999995 542 22   245688999999999875 34455566888888876543


Q ss_pred             hH-----------------HHHHhc---CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh-hHHHHHhc-CChhHHH
Q 010080          158 QE-----------------ETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQ-GALPPLA  215 (518)
Q Consensus       158 ~~-----------------~~~~v~---~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~-g~i~~L~  215 (518)
                      .+                 .++.++   +.++.|+.+|.+ ++..++..++.+|..|+...++ .++.++.. ++|+.|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             --------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            22                 223443   489999999987 7899999999999999987766 88888855 9999999


Q ss_pred             hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh----hHHHHHHHHHHHhhcCCchhhhHH
Q 010080          216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE----ELTTEVAWVVVYLSALSNVATSLL  291 (518)
Q Consensus       216 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~----~v~~~a~~~L~~L~~~~~~~~~~~  291 (518)
                      .+|.++...++-.++..|.+|+++.  ....+++.-.|+++.|++++..+..    .+..+|+-+|.+|.+++..+...+
T Consensus       173 ~lL~d~rE~iRneallLL~~Lt~~n--~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~F  250 (651)
T 3grl_A          173 DLLADSREVIRNDGVLLLQALTRSN--GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFF  250 (651)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhcCC--HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999999999999999999874  3455677667999999999986544    789999999999999888788889


Q ss_pred             HhcCchHHHHHHHccCCCcc------chh---hhhhhhhhhhcCCCc------ccceeeccCCCchhhhHHHHHHHhccC
Q 010080          292 VKSGVLQLLVERLATSNSLQ------LLI---PVLRSLGNLVAGDSS------TISDVLVPGHGITDQVIAVLVKCLKSE  356 (518)
Q Consensus       292 ~~~g~~~~Lv~lL~~~~~~~------v~~---~al~~L~nl~~~~~~------~~~~~i~~G~~~~~~~l~~L~~lL~~~  356 (518)
                      .+.|.++.|..+|. .+...      ...   .++.++.-++.....      ....+.      +.|+++.|++++...
T Consensus       251 rEt~~i~~L~~LL~-~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~------~~g~l~~Ll~ll~~~  323 (651)
T 3grl_A          251 KEGSYIQRMKPWFE-VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF------QCGLLQQLCTILMAT  323 (651)
T ss_dssp             HHTTCGGGGGGGGC-CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH------HTTHHHHHHHHHTCS
T ss_pred             HHcCCHHHHHHHhC-CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH------HCCCHHHHHHHHccC
Confidence            99999999999884 33221      112   256666666655332      112233      347999999998765


Q ss_pred             --hhhhHHHHHHHHHHhccCCHHHHHHHHhCC-----CHHHHHHH----hc-CCChhHHHHHHHHHHHhcCC
Q 010080          357 --HRVLKKEAAWVLSNIAAGSVEHKQLIHSSE-----ALALLLHL----LS-TSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       357 --~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~-----~i~~Li~l----L~-~~~~~v~~eA~~aL~nl~~~  416 (518)
                        ...++.+|+.+++.+..+++.....+....     -.|.++.+    +. ...+++|.+|++++..+..+
T Consensus       324 ~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~  395 (651)
T 3grl_A          324 GVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK  395 (651)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence              458999999999999999987776666533     23444443    43 35689999999999998874

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.67  E-value=1.9e-14  Score=153.78  Aligned_cols=375  Identities=13%  Similarity=0.133  Sum_probs=257.1

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      .++.+.+   .++|...+.+++..+-.+...+.+.       +.+.+.+++++.+++ ...+.-+..++.+++...++. 
T Consensus        16 ~~i~~~L---~~~~~~~k~~~~~kli~~~~~G~d~-------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~e~-   83 (591)
T 2vgl_B           16 FELKAEL---NNEKKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCMQTDN-LELKKLVYLYLMNYAKSQPDM-   83 (591)
T ss_dssp             HHHHHHT---TSSCHHHHHHHHHHHHHHHHTTCCC-------GGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHSHHH-
T ss_pred             HHHHHHH---cCCCHHHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCchH-
Confidence            4565555   5888999999998888876665432       335777888887655 455555777888887654443 


Q ss_pred             HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                        ++-+++.|.+-|.+ +++.++..|+.+|+++..  ++....     .++.+.+++.++++.+++.|++++..+++.. 
T Consensus        84 --~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~~--~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-  152 (591)
T 2vgl_B           84 --AIMAVNSFVKDCED-PNPLIRALAVRTMGCIRV--DKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-  152 (591)
T ss_dssp             --HHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCCS--GGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-
T ss_pred             --HHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCh--HHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-
Confidence              34567888888887 899999999999999973  444333     3578999999999999999999999999743 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  321 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~  321 (518)
                      |.    .+...+++|.+..+|.++|+.|+..|+++|..++..+++........+.+..|+..+. ..++-.+...+++++
T Consensus       153 p~----~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~-~~~~~~q~~il~~l~  227 (591)
T 2vgl_B          153 AQ----MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN-ECTEWGQIFILDCLS  227 (591)
T ss_dssp             CC----CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHH
T ss_pred             hh----hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC-CCCchHHHHHHHHHH
Confidence            33    2233578999999999999999999999999999755432111122345677777774 456667778889998


Q ss_pred             hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC---CHHHHHHHHhCCCHHHHHHHhcCC
Q 010080          322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTS  398 (518)
Q Consensus       322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~---~~~~~~~li~~~~i~~Li~lL~~~  398 (518)
                      ++...++..           ...+++.+..++.+.++.|+.+|++++.++...   +++..+.+.. .+.+.|+.++. +
T Consensus       228 ~l~~~~~~~-----------~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~  294 (591)
T 2vgl_B          228 NYNPKDDRE-----------AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-G  294 (591)
T ss_dssp             TSCCCSHHH-----------HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-S
T ss_pred             HhCCCChHH-----------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-C
Confidence            887543321           135888999999999999999999999999742   3344444433 36777887664 7


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCC-C----------CCchhHHHH-HH---HHHhc----CchHHHHHhhccCCHHHHHHHH
Q 010080          399 PFDIKKEVAYVLGNLCVSPTEG-E----------GKPKLIQEH-LV---SLVGR----GCLSGFIDLVRSADIEAARLGL  459 (518)
Q Consensus       399 ~~~v~~eA~~aL~nl~~~~~~~-~----------~~~~~~~~~-~~---~l~~~----g~i~~L~~lL~~~d~~~~~~~l  459 (518)
                      +..+|..|+.+|..++...... .          ..|..|+.. +.   .+.+.    .+++.|..++...|.+++..+.
T Consensus       295 d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v  374 (591)
T 2vgl_B          295 EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAV  374 (591)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            7889999998888886531100 0          111111100 01   11122    2455666777778888888888


Q ss_pred             HHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHH
Q 010080          460 QFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANG  504 (518)
Q Consensus       460 ~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~  504 (518)
                      ++|..+....+     ..  ....++.|-++..+.+..+...+..
T Consensus       375 ~aI~~la~~~~-----~~--~~~~v~~Ll~ll~~~~~~v~~e~i~  412 (591)
T 2vgl_B          375 RAIGRCAIKVE-----QS--AERCVSTLLDLIQTKVNYVVQEAIV  412 (591)
T ss_dssp             HHHHHHHTTCH-----HH--HHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHhCh-----hH--HHHHHHHHHHHHcccchHHHHHHHH
Confidence            88888875432     11  1234566666667777766665543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.67  E-value=9.7e-15  Score=155.66  Aligned_cols=375  Identities=13%  Similarity=0.125  Sum_probs=270.9

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CCh
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PAL  168 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v  168 (518)
                      .++.+++..+..|+..|.++......    ......++|.|..+++.++ +..+..|+.+|..++...+..  ... ..+
T Consensus       172 l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~~~  244 (588)
T 1b3u_A          172 LCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--DLEALVM  244 (588)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--HHHHHTH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence            34677888999999999887654321    1334678999999887554 555556899999988543321  222 378


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080          169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL  248 (518)
Q Consensus       169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  248 (518)
                      |.+..++.+ ++..+|..++.+|+.++....   ........+|.+..++++++..++..++++|..++....+.. ...
T Consensus       245 ~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~  319 (588)
T 1b3u_A          245 PTLRQAAED-KSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC-REN  319 (588)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT-HHH
T ss_pred             HHHHHHccC-CCHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh-hhh
Confidence            888888876 789999999999999985211   112334568999999999999999999999999997643221 100


Q ss_pred             HHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC
Q 010080          249 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  328 (518)
Q Consensus       249 i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  328 (518)
                      .....++|.+..++.+.+..++..++|+|..++..-...   .....+++.+..++ .+.++.++..++.+++.++....
T Consensus       320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~  395 (588)
T 1b3u_A          320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhcC
Confidence            123578999999999999999999999999998521111   11234678888888 46778899999999998875432


Q ss_pred             cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHH
Q 010080          329 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  407 (518)
Q Consensus       329 ~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~  407 (518)
                      ..  ..       ...++|.|..++.+.++.+|..++.+++.++.. +.+    .....++|.+...|++.+..||..|+
T Consensus       396 ~~--~~-------~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~  462 (588)
T 1b3u_A          396 IR--QL-------SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAAT  462 (588)
T ss_dssp             HH--HH-------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred             HH--HH-------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            11  11       135889999999999999999999999998742 111    11123678899999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHH
Q 010080          408 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM  487 (518)
Q Consensus       408 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l  487 (518)
                      .++..++...    |     .+    .....+++.|..++.+++..+...+++++..+....+.    . ......++.|
T Consensus       463 ~~l~~l~~~~----~-----~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~----~-~~~~~~~~~l  524 (588)
T 1b3u_A          463 SNLKKLVEKF----G-----KE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ----D-ITTKHMLPTV  524 (588)
T ss_dssp             HHHHHHHHHH----C-----HH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH----H-HHHHHTHHHH
T ss_pred             HHHHHHHHHh----C-----ch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH----H-HHHHHHHHHH
Confidence            9999997631    1     11    11245788888888888999999999999988754321    1 1122355667


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhhcC
Q 010080          488 ERFQFHENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       488 ~~L~~~~~~~i~~~a~~il~~~f~  511 (518)
                      ..+..+++++++..+...+..++.
T Consensus       525 ~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          525 LRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HhhCCCCCchHHHHHHHHHHHHHH
Confidence            777888999999988888877653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.66  E-value=1.4e-14  Score=139.77  Aligned_cols=254  Identities=11%  Similarity=0.033  Sum_probs=194.9

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      .+++.|+..|.+ +++.++..|+|+|+++..           .+.++.|+.++.+++..++..++|+|..+....  .. 
T Consensus        23 ~~i~~L~~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~~-   87 (280)
T 1oyz_A           23 LNDDELFRLLDD-HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KC-   87 (280)
T ss_dssp             SCHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TT-
T ss_pred             hhHHHHHHHHHc-CCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--cc-
Confidence            478999999987 789999999999999863           235888999999999999999999999986321  11 


Q ss_pred             hhHHHhhchHHHHHH-HhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080          246 TELIKVDGLLDAILR-HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~  324 (518)
                           ...+++.|.. ++.++++.++..++|+|+++....+..     ...+++.|+.+| .++++.++..++++|+++.
T Consensus        88 -----~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           88 -----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             -----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred             -----chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence                 1245566653 567889999999999999998533222     224578888888 5888999999999999874


Q ss_pred             cCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHH
Q 010080          325 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK  404 (518)
Q Consensus       325 ~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~  404 (518)
                      ..                 .+++.|..++.++++.+|..|+|+|+++....+.         +++.|+.+|++.++.+|.
T Consensus       157 ~~-----------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~  210 (280)
T 1oyz_A          157 DK-----------------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRI  210 (280)
T ss_dssp             -------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHH
T ss_pred             CH-----------------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHH
Confidence            21                 3789999999999999999999999999544432         568899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchH
Q 010080          405 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGI  484 (518)
Q Consensus       405 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl  484 (518)
                      .|+++|+++..                     ..+++.|+.+|.+++  +...+.++|..+-   .          ...+
T Consensus       211 ~A~~aL~~~~~---------------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~---~----------~~~~  254 (280)
T 1oyz_A          211 EAIIGLSYRKD---------------------KRVLSVLCDELKKNT--VYDDIIEAAGELG---D----------KTLL  254 (280)
T ss_dssp             HHHHHHHHTTC---------------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC---C----------GGGH
T ss_pred             HHHHHHHHhCC---------------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC---c----------hhhh
Confidence            99999999842                     136788888887765  6667777777661   1          1345


Q ss_pred             HHHHHH-hcCCCHHHHHHHHHHHH
Q 010080          485 DAMERF-QFHENEDLRNMANGLVD  507 (518)
Q Consensus       485 ~~l~~L-~~~~~~~i~~~a~~il~  507 (518)
                      +.|..+ ..++++++...+...+.
T Consensus       255 ~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          255 PVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHhh
Confidence            566554 45677787777766654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.58  E-value=5.4e-14  Score=156.91  Aligned_cols=385  Identities=14%  Similarity=0.179  Sum_probs=254.0

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCCC---------------CCc-HHHHHHcCCHHHHHHHhcCC------CChHHHHHH
Q 010080           89 AYHGKGAMQKRVNALRELRRLLSRFE---------------FPP-IETALKAGAIPVLVQCLAFG------SPDEQLLEA  146 (518)
Q Consensus        89 ~~~~s~~~~~~~~a~~~lr~lls~~~---------------~~~-~~~~i~~g~ip~Lv~~L~~~------~~~~~~~eA  146 (518)
                      ..+.+.+...+..|+..+..+.....               .+. ....+ ..++|.++..|...      +.......|
T Consensus       273 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a  351 (861)
T 2bpt_A          273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSA  351 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHH
Confidence            35567788889999988877655321               111 11122 56889999988742      123455668


Q ss_pred             HHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-h-hHHHHHhcCChhHHHhhhCCCCh
Q 010080          147 AWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-E-FRNVLLSQGALPPLARMMLPNKG  223 (518)
Q Consensus       147 ~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~-~r~~~~~~g~i~~L~~ll~~~~~  223 (518)
                      +.+|..++....   ..++ ..+|.+...+.+ .+..+++.|+++|+.++.... . .... +. .+++.|+..+.++++
T Consensus       352 ~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~-l~-~il~~l~~~l~d~~~  425 (861)
T 2bpt_A          352 GACLQLFAQNCG---NHILEPVLEFVEQNITA-DNWRNREAAVMAFGSIMDGPDKVQRTYY-VH-QALPSILNLMNDQSL  425 (861)
T ss_dssp             HHHHHHHHHHHG---GGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHH-HH-HHHHHHHHGGGCSCH
T ss_pred             HHHHHHHHHHcc---HhHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHcCCCHHHHHHH-HH-HHHHHHHHHcCCCcH
Confidence            999999885322   2233 367777778876 689999999999999997532 2 2222 22 468888888888899


Q ss_pred             hHHHHHHHHHHHhhcCCCCCc-hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc----hhhhHHHhcCchH
Q 010080          224 STVRTAAWALSNLIKGPDPKP-ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN----VATSLLVKSGVLQ  298 (518)
Q Consensus       224 ~~~~~a~~~L~nL~~~~~~~~-~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~----~~~~~~~~~g~~~  298 (518)
                      .++..++|++..++....+.. ....  ...++|.++..+.++ +.++..+||+|.+++.+..    ......+ ..+++
T Consensus       426 ~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~  501 (861)
T 2bpt_A          426 QVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVD  501 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHH
Confidence            999999999999986421110 0112  247889999988765 8999999999999986421    1221111 34577


Q ss_pred             HHHHHHcc-CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC---------------hhhhHH
Q 010080          299 LLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE---------------HRVLKK  362 (518)
Q Consensus       299 ~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~---------------~~~i~~  362 (518)
                      .|+..+.. ..+..++..++.+++.++..........+       ..++|.++..+...               ...++.
T Consensus       502 ~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-------~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~  574 (861)
T 2bpt_A          502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-------ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS  574 (861)
T ss_dssp             HHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-------HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-------HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence            78887742 22367888999999999976654433333       24777777776531               346888


Q ss_pred             HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCCh-hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchH
Q 010080          363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF-DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS  441 (518)
Q Consensus       363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~-~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~  441 (518)
                      .+++++++++......+....+ .+++.++.++++.+. .++..+++++++++...    |.     +...++-  .+++
T Consensus       575 ~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~----~~-----~~~~~l~--~i~~  642 (861)
T 2bpt_A          575 NILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASL----GK-----GFEKYLE--TFSP  642 (861)
T ss_dssp             HHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH----GG-----GGHHHHH--HHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH----hh-----hHHHHHH--HHHH
Confidence            9999999998754433333333 478888899988777 89999999999997632    10     1112222  2788


Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCC--HHHHHHHHHHH
Q 010080          442 GFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHEN--EDLRNMANGLV  506 (518)
Q Consensus       442 ~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~--~~i~~~a~~il  506 (518)
                      .|...|..+++++...++.++..+.+..+. .....+  ...++.+.....+++  ++++..+...+
T Consensus       643 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l  706 (861)
T 2bpt_A          643 YLLKALNQVDSPVSITAVGFIADISNSLEE-DFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVF  706 (861)
T ss_dssp             HHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHhch-hccchH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence            899999888888999999999999876542 111111  122344444444443  66766664444

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.56  E-value=5.3e-12  Score=130.73  Aligned_cols=356  Identities=14%  Similarity=0.125  Sum_probs=240.9

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALK-AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  159 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~-~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~  159 (518)
                      .+.+.-++..+.+.|...++.+++.|..++...+....+.++. .+++|.|+.+|+.+. +.++-+|+..|++++.++++
T Consensus       121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~  199 (651)
T 3grl_A          121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSNGA  199 (651)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCCHH
Confidence            3556667777789999999999999999877654323345665 499999999998654 66777899999999999876


Q ss_pred             HHHHhc--CChHHHHHhhcCCC---CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCCh------hHHHH
Q 010080          160 ETKALL--PALPLLIAHLGEKS---SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG------STVRT  228 (518)
Q Consensus       160 ~~~~v~--~~v~~Lv~lL~~~~---~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~------~~~~~  228 (518)
                      .-+.+.  |+++.|+.++....   ...+.+-|+.+|.|+...++.++..+.+.|++|.|..+++.+..      ....+
T Consensus       200 iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N  279 (651)
T 3grl_A          200 IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTN  279 (651)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHH
Confidence            555554  89999999997621   34789999999999999999999999999999999999985421      23344


Q ss_pred             ---HHHHHHHhhcCCCC----CchhhHHHhhchHHHHHHHhccC--ChhHHHHHHHHHHHhhcCCchhhhHHHhcC----
Q 010080          229 ---AAWALSNLIKGPDP----KPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSNVATSLLVKSG----  295 (518)
Q Consensus       229 ---a~~~L~nL~~~~~~----~~~~~~i~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g----  295 (518)
                         +.-++.-|+...++    ..+...+...|+++.|++++...  ...++..++.+++.+.++++...+.+.+..    
T Consensus       280 ~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~  359 (651)
T 3grl_A          280 LHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSN  359 (651)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSS
T ss_pred             HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCC
Confidence               44555556654322    12334556789999999998865  568999999999999998876666665432    


Q ss_pred             -chHHHHHH----HccCCCccchhhhhhhhhhhhcCCCcccceee----cc-----CCCchhhhHHHHHHHhccChhhhH
Q 010080          296 -VLQLLVER----LATSNSLQLLIPVLRSLGNLVAGDSSTISDVL----VP-----GHGITDQVIAVLVKCLKSEHRVLK  361 (518)
Q Consensus       296 -~~~~Lv~l----L~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i----~~-----G~~~~~~~l~~L~~lL~~~~~~i~  361 (518)
                       ..+.++.+    +.......++..|+.++..++.+++.....++    ..     +.....|.  .|..-+.+.++.--
T Consensus       360 ~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~--ll~~~l~s~d~~~~  437 (651)
T 3grl_A          360 PPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQ--LLCGGLFSTDSLSN  437 (651)
T ss_dssp             SCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHH--HHHHHHTSSCHHHH
T ss_pred             CCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcch--hhhhhhccCchHHH
Confidence             12334443    43344566788999999999888753211111    10     00111222  23444445566444


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHh------C-----CCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHH
Q 010080          362 KEAAWVLSNIAAGSVEHKQLIHS------S-----EALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE  429 (518)
Q Consensus       362 ~~a~~~Lsnl~~~~~~~~~~li~------~-----~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~  429 (518)
                      -.|+.++..+..++++....+..      .     -.++.+..+|.. .++.++---+..|+--..      +.|    .
T Consensus       438 wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~------e~p----~  507 (651)
T 3grl_A          438 WCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLS------NCP----I  507 (651)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHT------TCH----H
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHh------CCh----H
Confidence            56899999999998777665543      1     136666777754 344444333334444343      234    3


Q ss_pred             HHHHHH-hcCchHHHHHhhcc
Q 010080          430 HLVSLV-GRGCLSGFIDLVRS  449 (518)
Q Consensus       430 ~~~~l~-~~g~i~~L~~lL~~  449 (518)
                      -++.++ +...++.|+..+..
T Consensus       508 AV~dFL~~~s~l~~L~~~i~~  528 (651)
T 3grl_A          508 AVTHFLHNSANVPFLTGQIAE  528 (651)
T ss_dssp             HHHHHHHSTTHHHHHHHHHHS
T ss_pred             HHHHHHcCCchHHHHHHHHHh
Confidence            334445 44569999988753

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.54  E-value=2.3e-13  Score=151.88  Aligned_cols=345  Identities=13%  Similarity=0.183  Sum_probs=231.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc-CChHHHHH
Q 010080           96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL-PALPLLIA  173 (518)
Q Consensus        96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~-~~v~~Lv~  173 (518)
                      ...+..|...|..+.......    ++ ..++|.+.+.|.+.+ ...+..|+++|+.++.+.. +.....+ ..+|.++.
T Consensus       345 ~~~r~~a~~~L~~l~~~~~~~----~~-~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~  418 (861)
T 2bpt_A          345 WNVSMSAGACLQLFAQNCGNH----IL-EPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN  418 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGG----GH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHccHh----HH-HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            356666777776654322111    11 235566666666544 4455569999999997753 4444444 58899999


Q ss_pred             hhcCCCCHHHHHHHHHHHHhhhCCChhh-HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC---CCchhhHH
Q 010080          174 HLGEKSSSPVAEQCAWALGNVAGEGEEF-RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD---PKPATELI  249 (518)
Q Consensus       174 lL~~~~~~~v~~~a~~~L~nla~d~~~~-r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~---~~~~~~~i  249 (518)
                      .+.+ +++.++..++|+|++++...... ...-.-..++|.|+..+.++ +.++..++|+|.+++....   +...... 
T Consensus       419 ~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~-  495 (861)
T 2bpt_A          419 LMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF-  495 (861)
T ss_dssp             GGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG-
T ss_pred             HcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH-
Confidence            9987 78999999999999998532110 00001123467777777765 8899999999999987532   1111122 


Q ss_pred             HhhchHHHHHHHhccCC--hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccC--------------CCccch
Q 010080          250 KVDGLLDAILRHLKRAD--EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS--------------NSLQLL  313 (518)
Q Consensus       250 ~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~--------------~~~~v~  313 (518)
                       ...+++.|++++.+.|  +.++..+++++..++..........+. .+++.++..|...              ....++
T Consensus       496 -~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~  573 (861)
T 2bpt_A          496 -YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ  573 (861)
T ss_dssp             -HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence             2467888888888544  689999999999999754443332222 4566677766421              123456


Q ss_pred             hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHH
Q 010080          314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL  392 (518)
Q Consensus       314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li  392 (518)
                      ..++.+|++++...+......+       ..+++.+..++.+.+. .++..+++++++++....+.....+. .++|.|.
T Consensus       574 ~~~~~~l~~l~~~~~~~~~~~~-------~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~  645 (861)
T 2bpt_A          574 SNILTVLAAVIRKSPSSVEPVA-------DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLL  645 (861)
T ss_dssp             HHHHHHHHHHHHHCGGGTGGGH-------HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHH
Confidence            6889999999876554333333       3588889999988777 89999999999998643333333333 2889999


Q ss_pred             HHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC--HHHHHHHHHHHHHHHccCC
Q 010080          393 HLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD--IEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       393 ~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d--~~~~~~~l~~l~~il~~~~  470 (518)
                      ..+.+.++.++..|++++..++...   +.   .+..++     ..+++.++..|.+.+  +++...++.++..+....+
T Consensus       646 ~~l~~~~~~vr~~a~~~l~~l~~~~---~~---~~~~~~-----~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~  714 (861)
T 2bpt_A          646 KALNQVDSPVSITAVGFIADISNSL---EE---DFRRYS-----DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG  714 (861)
T ss_dssp             HHHHCTTSHHHHHHHHHHHHHHHHT---GG---GGHHHH-----HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHh---ch---hccchH-----HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence            9998888899999999999997642   11   111122     245777888887754  7888889999988887543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.50  E-value=1e-12  Score=146.95  Aligned_cols=379  Identities=16%  Similarity=0.148  Sum_probs=230.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc-CChHHHHH
Q 010080           96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL-PALPLLIA  173 (518)
Q Consensus        96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~-~~v~~Lv~  173 (518)
                      ...+..|...+..+.......    ++ ..++|.+...|.+.+ ...+..|+++|+.++.+.. +.....+ ..+|.++.
T Consensus       342 ~~~r~~a~~~l~~l~~~~~~~----~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~  415 (876)
T 1qgr_A          342 WNPCKAAGVCLMLLATCCEDD----IV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE  415 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHHGGG----GH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcHh----hH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            445666666666644322111    12 245666777776543 5555669999999998764 4443444 58999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHhhhCCChhh---HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC---------
Q 010080          174 HLGEKSSSPVAEQCAWALGNVAGEGEEF---RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD---------  241 (518)
Q Consensus       174 lL~~~~~~~v~~~a~~~L~nla~d~~~~---r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~---------  241 (518)
                      .|.+ +++.|+..|+|+|++++...+..   ...  -..+++.|+..+.++ +.++..++|+|.+++....         
T Consensus       416 ~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~  491 (876)
T 1qgr_A          416 LMKD-PSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQ  491 (876)
T ss_dssp             HHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred             HhCC-CCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            9987 78999999999999998753321   111  123567777777764 8899999999999986411         


Q ss_pred             ----CCchhhHHHhhchHHHHHHHhccCC---hh----------------------------------------------
Q 010080          242 ----PKPATELIKVDGLLDAILRHLKRAD---EE----------------------------------------------  268 (518)
Q Consensus       242 ----~~~~~~~i~~~~~l~~L~~lL~~~d---~~----------------------------------------------  268 (518)
                          .......  ...++|.|..++...+   ..                                              
T Consensus       492 ~~~~~~~l~~~--~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~  569 (876)
T 1qgr_A          492 EEPATYCLSSS--FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQ  569 (876)
T ss_dssp             CCCCCCSSTTT--HHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred             ccccchhhhHh--HHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                0001111  1356666666655321   12                                              


Q ss_pred             ----------HHHHHHHHHHHhhcCCc-hhhhHHHhcCchHHHHHHHccCCC--ccchhhhhhhhhhhhcCCCcccceee
Q 010080          269 ----------LTTEVAWVVVYLSALSN-VATSLLVKSGVLQLLVERLATSNS--LQLLIPVLRSLGNLVAGDSSTISDVL  335 (518)
Q Consensus       269 ----------v~~~a~~~L~~L~~~~~-~~~~~~~~~g~~~~Lv~lL~~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i  335 (518)
                                ++..+++++..++..-. ....... ..+++.++..+. +.+  ..++..++.+++.++..........+
T Consensus       570 ~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~l~~~l~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  647 (876)
T 1qgr_A          570 STSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQ-STAGSGGVQEDALMAVSTLVEVLGGEFLKYM  647 (876)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-HHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-HHHHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence                      33444555555554322 1211111 235666677664 332  36788999999999875443333333


Q ss_pred             ccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CChhHHHHHHHHHHH
Q 010080          336 VPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGN  412 (518)
Q Consensus       336 ~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~eA~~aL~n  412 (518)
                             ..+++.+...+.+. ++.++..|+++++.|+....+.+...+. .+++.|+..|.+  .+.+++..+++++++
T Consensus       648 -------~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~  719 (876)
T 1qgr_A          648 -------EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGD  719 (876)
T ss_dssp             -------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHH
Confidence                   25889999999876 7899999999999998643333444333 478889999977  467899999999999


Q ss_pred             hcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC----CH-------HHHHHHHHHHHHHHccCCCC---------
Q 010080          413 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA----DI-------EAARLGLQFMELVLRGMPNH---------  472 (518)
Q Consensus       413 l~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~----d~-------~~~~~~l~~l~~il~~~~~~---------  472 (518)
                      ++...   |+..      ..++  ..+++.|...+...    |+       .+...+++++..++......         
T Consensus       720 i~~~~---g~~~------~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~  788 (876)
T 1qgr_A          720 IALAI---GGEF------KKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVM  788 (876)
T ss_dssp             HHHHH---GGGG------GGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGG
T ss_pred             HHHHh---chhH------HHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHH
Confidence            97631   1110      0111  23566667666543    22       56677788888777643221         


Q ss_pred             cchhHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHhh
Q 010080          473 EGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDKY  509 (518)
Q Consensus       473 ~~~~~ie~~ggl~~l~~L~~~~--~~~i~~~a~~il~~~  509 (518)
                      .....+..  .+..+..+..++  +..++..|...+..+
T Consensus       789 ~~~~~~~~--i~~~l~~~~~~~~~~~~vr~~a~~~l~~l  825 (876)
T 1qgr_A          789 LVQPRVEF--ILSFIDHIAGDEDHTDGVVACAAGLIGDL  825 (876)
T ss_dssp             GSGGGHHH--HHHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            01111111  123344444555  788988887766653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.49  E-value=1.1e-12  Score=135.39  Aligned_cols=387  Identities=12%  Similarity=0.101  Sum_probs=259.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQEETK  162 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~-~~~~~~eA~~~L~nia~~~~~~~~  162 (518)
                      |.+++....++|.+.+.+|...|.++-. ..        ..+.++.|+++|...+ +...+.-|+-.|.|+.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~-~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAV-EN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHh-hC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            4556667778999999999999988432 10        1345677888887643 445555588899998754311100


Q ss_pred             -------Hhc------CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC-hhhHHHHHhcCChhHHHhhhCCC--ChhHH
Q 010080          163 -------ALL------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPN--KGSTV  226 (518)
Q Consensus       163 -------~v~------~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~ll~~~--~~~~~  226 (518)
                             ..+      ..-..++..|.+ ++..+ .+++.+++.|+... +..    .-.+.+|.|+..+.++  +..++
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r  147 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMK  147 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHH
Confidence                   001      133456777776 56678 89999999998631 110    1135788888888887  88999


Q ss_pred             HHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC--ChhHHHHHHHHHHHhhcCCchhhh-HHHhcCchHHHHHH
Q 010080          227 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSNVATS-LLVKSGVLQLLVER  303 (518)
Q Consensus       227 ~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~~~~Lv~l  303 (518)
                      ..++++|..++....+......  ...+++.+..++.++  +++++..+++++.++...-.+... .....-+++.+...
T Consensus       148 ~~al~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  225 (462)
T 1ibr_B          148 ESTLEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA  225 (462)
T ss_dssp             HHHHHHHHHHHHHSCGGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence            9999999999964212111112  246888899999887  789999999999987643221111 01111135555555


Q ss_pred             HccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHH------
Q 010080          304 LATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE------  377 (518)
Q Consensus       304 L~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~------  377 (518)
                      + .+.+..++..++++++.++..........+.      .++++.+...+.+.++.++..|++.+++++.....      
T Consensus       226 ~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~  298 (462)
T 1ibr_B          226 T-QCPDTRVRVAALQNLVKIMSLYYQYMETYMG------PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS  298 (462)
T ss_dssp             T-TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT------TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5 4678889999999999998765443333331      15888888888888899999999999998753210      


Q ss_pred             ---------------HHHHHHhCCCHHHHHHHhcCC-------ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 010080          378 ---------------HKQLIHSSEALALLLHLLSTS-------PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV  435 (518)
Q Consensus       378 ---------------~~~~li~~~~i~~Li~lL~~~-------~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~  435 (518)
                                     ..+..+ ..++|.++..|...       +..+|+.|+.+|..++...    +.     ...    
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~----~~-----~~~----  364 (462)
T 1ibr_B          299 EAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC----ED-----DIV----  364 (462)
T ss_dssp             CTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT----TT-----THH----
T ss_pred             cccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc----cH-----HHH----
Confidence                           111111 23677788888542       3578999999999997642    11     111    


Q ss_pred             hcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 010080          436 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       436 ~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~  511 (518)
                       ..+++.+...|.++++.++..++.++..+..++........+  ...++.|..+..++++.++..|...+.+|..
T Consensus       365 -~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence             135677788888999999999999999998754311111111  3467778888889999999999998888754

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.49  E-value=7e-13  Score=122.06  Aligned_cols=186  Identities=21%  Similarity=0.250  Sum_probs=157.7

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      +.++.|+.+|.+ ++..++..|+++|+.+..           ..+++.|+.++.+++..++..++++|..+..       
T Consensus        19 ~~~~~L~~~L~~-~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQD-DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             hHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            378999999987 799999999999998754           2568999999999999999999999999851       


Q ss_pred             hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                            ...++.|..+|.++++.++..++++|..+..           .+.++.|+.+| .++++.++..++++|+++..
T Consensus        80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~  141 (211)
T 3ltm_A           80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD  141 (211)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC
Confidence                  2567899999999999999999999999863           24678889988 58889999999999999831


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  405 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e  405 (518)
                                       ...++.|..++.++++.+|..|+++|+.+..  +         .+++.|..+++++++.||..
T Consensus       142 -----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~  193 (211)
T 3ltm_A          142 -----------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKV  193 (211)
T ss_dssp             -----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHH
T ss_pred             -----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHH
Confidence                             1478999999999999999999999999942  2         26778999999999999999


Q ss_pred             HHHHHHHhcCC
Q 010080          406 VAYVLGNLCVS  416 (518)
Q Consensus       406 A~~aL~nl~~~  416 (518)
                      |.++|.++...
T Consensus       194 A~~aL~~~~~~  204 (211)
T 3ltm_A          194 AVNYLETHKSF  204 (211)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHhcCCC
Confidence            99999999764

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.48  E-value=1.2e-12  Score=119.53  Aligned_cols=183  Identities=22%  Similarity=0.272  Sum_probs=157.3

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      ..+.++.+|.+ +++.++..|+++|+.+..           .+.++.|+.++.+++..++..++++|..+..        
T Consensus        15 ~~~~~i~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           15 KVEMYIKNLQD-DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             chHHHHHHhcC-CCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            67899999988 799999999999998764           2468999999999999999999999998841        


Q ss_pred             hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080          247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  326 (518)
Q Consensus       247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  326 (518)
                           ...++.|..+|.++++.++..++|+|..+..           ...++.|+.+| .++++.++..++++|+++.. 
T Consensus        75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence                 2567899999999999999999999999863           24678888888 57888999999999999842 


Q ss_pred             CCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHH
Q 010080          327 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV  406 (518)
Q Consensus       327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA  406 (518)
                                      ...++.|..++.++++.+|..|+++|+++  +.++         .++.|..++.++++.||..|
T Consensus       137 ----------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~--~~~~---------~~~~L~~~l~d~~~~vr~~A  189 (201)
T 3ltj_A          137 ----------------ERAVEPLIKALKDEDGWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVA  189 (201)
T ss_dssp             ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH--CSHH---------HHHHHHHHHHHCCHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--Cchh---------HHHHHHHHHhCCCHHHHHHH
Confidence                            14889999999999999999999999999  3322         67788899999999999999


Q ss_pred             HHHHHHhc
Q 010080          407 AYVLGNLC  414 (518)
Q Consensus       407 ~~aL~nl~  414 (518)
                      .++|.++-
T Consensus       190 ~~aL~~l~  197 (201)
T 3ltj_A          190 VNYLETHK  197 (201)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHH
Confidence            99999874

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.47  E-value=5.7e-13  Score=137.48  Aligned_cols=353  Identities=13%  Similarity=0.131  Sum_probs=235.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCC----------cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080           94 GAMQKRVNALRELRRLLSRFEFP----------PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  163 (518)
Q Consensus        94 ~~~~~~~~a~~~lr~lls~~~~~----------~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~  163 (518)
                      .++..+..|...|++++.....+          .+..-....+-..|+..|..++ +.. ..++.++..|+...... ..
T Consensus        49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~~ia~~~~~~-~~  125 (462)
T 1ibr_B           49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVAGIACAEIPV-NQ  125 (462)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHHHHHHHHGGG-TC
T ss_pred             CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHHHHHHHhccc-cc
Confidence            36888999999999988653100          0111122345556777787654 335 66899999998542110 11


Q ss_pred             hcCChHHHHHhhcCCC-CHHHHHHHHHHHHhhhCCC-hhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcC
Q 010080          164 LLPALPLLIAHLGEKS-SSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       164 v~~~v~~Lv~lL~~~~-~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~  239 (518)
                      .-+.+|.|+..+.+.+ ++.+++.|+++|+.++.+. +..-.... ..+++.++.++.++  +..++..+++++.++...
T Consensus       126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~  204 (462)
T 1ibr_B          126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (462)
T ss_dssp             CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            2258999999998732 8899999999999998643 22111111 23677788888877  789999999999997643


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhh
Q 010080          240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS  319 (518)
Q Consensus       240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~  319 (518)
                      .......... ..-+++.+...+.+.+++++..++++|..++..........+..++++.++..+ .+.+..++..++.+
T Consensus       205 ~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~  282 (462)
T 1ibr_B          205 TKANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEF  282 (462)
T ss_dssp             THHHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHH
T ss_pred             HHHhhhhhHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHH
Confidence            1100000011 122477777788888999999999999999975443332222226677777777 46778889999999


Q ss_pred             hhhhhcCC--------C---------cccceeeccCCCchhhhHHHHHHHhccC-------hhhhHHHHHHHHHHhccCC
Q 010080          320 LGNLVAGD--------S---------STISDVLVPGHGITDQVIAVLVKCLKSE-------HRVLKKEAAWVLSNIAAGS  375 (518)
Q Consensus       320 L~nl~~~~--------~---------~~~~~~i~~G~~~~~~~l~~L~~lL~~~-------~~~i~~~a~~~Lsnl~~~~  375 (518)
                      ++.++...        +         .....++..   .-..++|.++..+...       ++.+|..|+.+|+.++...
T Consensus       283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~  359 (462)
T 1ibr_B          283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG---ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC  359 (462)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHH---HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcccccccCCCccchhHHHHHH---HhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc
Confidence            88887542        0         000001100   0134677777777532       3589999999999998654


Q ss_pred             HHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHH
Q 010080          376 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA  455 (518)
Q Consensus       376 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~  455 (518)
                      ++   .++. .++|.+...+++.+..+|..|+++|+.++.+..     ++.    +... -..+++.++.+|.++++.+.
T Consensus       360 ~~---~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-----~~~----~~~~-l~~~~~~l~~~l~d~~~~Vr  425 (462)
T 1ibr_B          360 ED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-----PSQ----LKPL-VIQAMPTLIELMKDPSVVVR  425 (462)
T ss_dssp             TT---THHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-----TTT----TCTT-TTTHHHHHHHGGGCSCHHHH
T ss_pred             cH---HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-----HHH----HHHH-HHHHHHHHHHHhcCCCHHHH
Confidence            32   2222 367888888999999999999999999987532     110    1111 14689999999999999999


Q ss_pred             HHHHHHHHHHHccC
Q 010080          456 RLGLQFMELVLRGM  469 (518)
Q Consensus       456 ~~~l~~l~~il~~~  469 (518)
                      ..++++|.++....
T Consensus       426 ~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          426 DTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.46  E-value=2.1e-12  Score=144.33  Aligned_cols=367  Identities=11%  Similarity=0.138  Sum_probs=239.7

Q ss_pred             HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCC
Q 010080           81 VEELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGK  157 (518)
Q Consensus        81 ~~~l~~~l~~~~s~--~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~-~~~~~~eA~~~L~nia~~~  157 (518)
                      ++.+.+.+   .++  ++..+..|+..|..+...-. +..-.-.-..+++.+...+..++ +...+..|+++|.+++..-
T Consensus       130 l~~l~~~l---~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (876)
T 1qgr_A          130 IPQLVANV---TNPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (876)
T ss_dssp             HHHHHHHH---HCTTCCHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHhcC-HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            34444444   466  88889999999998765421 11100111456777888887653 4566677999999988543


Q ss_pred             hHHHH--Hhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHH
Q 010080          158 QEETK--ALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS  234 (518)
Q Consensus       158 ~~~~~--~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  234 (518)
                      .....  ... ..++.+..++.+ ++.+++..++++|+.++...+..-...+...+++.++..+.+.+..++..+++++.
T Consensus       206 ~~~~~~~~~~~~il~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~  284 (876)
T 1qgr_A          206 KANFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS  284 (876)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            32211  011 146667777765 68999999999999998754433222333467888888888888999999999999


Q ss_pred             HhhcCC---------------CC-CchhhHH--HhhchHHHHHHHhcc-------CChhHHHHHHHHHHHhhcCCchhhh
Q 010080          235 NLIKGP---------------DP-KPATELI--KVDGLLDAILRHLKR-------ADEELTTEVAWVVVYLSALSNVATS  289 (518)
Q Consensus       235 nL~~~~---------------~~-~~~~~~i--~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~L~~~~~~~~~  289 (518)
                      ++++..               .| .......  ....++|.++..+..       ++..++..+..+|..++....+   
T Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---  361 (876)
T 1qgr_A          285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---
T ss_pred             HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---
Confidence            988531               00 1111111  124677888888753       2346888999999988863221   


Q ss_pred             HHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC-cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHH
Q 010080          290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL  368 (518)
Q Consensus       290 ~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~L  368 (518)
                      .++ ..+++.+...+ .+.++.++..+++++|.++.+.. ......+       ..++|.++..+.++++.+|..|+|++
T Consensus       362 ~~~-~~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-------~~~l~~l~~~l~d~~~~vr~~a~~~l  432 (876)
T 1qgr_A          362 DIV-PHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-------IQAMPTLIELMKDPSVVVRDTAAWTV  432 (876)
T ss_dssp             GGH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             hhH-HHHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-------HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            122 24566666766 46788899999999999997754 2222222       35899999999999999999999999


Q ss_pred             HHhccCCHHHH--HHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC-----CC---CchhHHHHHHHHHhcC
Q 010080          369 SNIAAGSVEHK--QLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG-----EG---KPKLIQEHLVSLVGRG  438 (518)
Q Consensus       369 snl~~~~~~~~--~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~-----~~---~~~~~~~~~~~l~~~g  438 (518)
                      ++++...+...  ...+ ..+++.|+..|.+. ..++..|+|+|.+++......     .+   .++.+..+.     ..
T Consensus       433 ~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~  505 (876)
T 1qgr_A          433 GRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF-----EL  505 (876)
T ss_dssp             HHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH-----HH
T ss_pred             HHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH-----HH
Confidence            99987543211  0111 13677888888775 889999999999998531000     00   000000111     23


Q ss_pred             chHHHHHhhccC---CHHHHHHHHHHHHHHHccCCC
Q 010080          439 CLSGFIDLVRSA---DIEAARLGLQFMELVLRGMPN  471 (518)
Q Consensus       439 ~i~~L~~lL~~~---d~~~~~~~l~~l~~il~~~~~  471 (518)
                      +++.|..++...   +..+...+++++..+....+.
T Consensus       506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~  541 (876)
T 1qgr_A          506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK  541 (876)
T ss_dssp             HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence            677888888764   346777888999988876543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.46  E-value=2.4e-11  Score=130.22  Aligned_cols=353  Identities=13%  Similarity=0.105  Sum_probs=244.1

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      .++.+.++   +++...+.+++..+-.+...+.+-       +.+.+-.++++.+++ ....+-+..++.+++..+++..
T Consensus        37 ~~ir~~l~---~~~~~~k~~~l~kli~~~~~G~d~-------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~~  105 (618)
T 1w63_A           37 AAIRSSFR---EEDNTYRCRNVAKLLYMHMLGYPA-------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDVH  105 (618)
T ss_dssp             HHHHHHHT---TTCTTTHHHHHHHHHHHHHTTCCC-------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHHH
T ss_pred             HHHHHHhh---CCCHHHHHHHHHHHHHHHHcCCCC-------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHHH
Confidence            45555554   566677888887777765554322       335566667777654 4444556678888887665422


Q ss_pred             HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                         +-++..|.+-|.+ +++.++..|+++|++|..  ++.     ....++.+.+++.++++.+++.|++++.++++.. 
T Consensus       106 ---~l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~--~~~-----~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-  173 (618)
T 1w63_A          106 ---LLMTNCIKNDLNH-STQFVQGLALCTLGCMGS--SEM-----CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-  173 (618)
T ss_dssp             ---HHHHHHHHHHHSC-SSSHHHHHHHHHHHHHCC--HHH-----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-
T ss_pred             ---HHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCC--HHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-
Confidence               2457788888887 789999999999999984  332     1346788899999999999999999999999753 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc--------------C
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT--------------S  307 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~--------------~  307 (518)
                      |    +.+  .++++.+..+|.+.|+.|+..|+++|..++..+++....+  ...++.++.+|.+              .
T Consensus       174 p----~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~  245 (618)
T 1w63_A          174 P----ELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGI  245 (618)
T ss_dssp             G----GGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSS
T ss_pred             h----HHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCC
Confidence            2    232  3788899999999999999999999999997544322222  2567878877642              2


Q ss_pred             CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc------cChhhhHHHHHHHHHHhccCCHHHHHH
Q 010080          308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK------SEHRVLKKEAAWVLSNIAAGSVEHKQL  381 (518)
Q Consensus       308 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~------~~~~~i~~~a~~~Lsnl~~~~~~~~~~  381 (518)
                      .++-.+..++++|+.++..++....           .+++.|..++.      +.+..+..+|++++.++.. .+.... 
T Consensus       246 ~~~~~q~~il~~L~~l~~~~~~~~~-----------~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~-  312 (618)
T 1w63_A          246 SDPFLQVRILRLLRILGRNDDDSSE-----------AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV-  312 (618)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCHHHHH-----------TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH-
T ss_pred             CCChHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH-
Confidence            3555667788999999876543222           24455555542      3456899999999999854 332222 


Q ss_pred             HHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHH
Q 010080          382 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQF  461 (518)
Q Consensus       382 li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~  461 (518)
                          .+++.|..+|.+.++.+|.-|+.+|..++..      .        ..++ ......++..|.++|..+...+++.
T Consensus       313 ----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~------~--------p~~~-~~~~~~i~~~l~d~d~~Ir~~alel  373 (618)
T 1w63_A          313 ----LAINILGRFLLNNDKNIRYVALTSLLKTVQT------D--------HNAV-QRHRSTIVDCLKDLDVSIKRRAMEL  373 (618)
T ss_dssp             ----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH------H--------HHHH-GGGHHHHHHGGGSSCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh------C--------HHHH-HHHHHHHHHHccCCChhHHHHHHHH
Confidence                2567888899999999999999999999752      1        1222 2356788899999999999999999


Q ss_pred             HHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHH
Q 010080          462 MELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLV  506 (518)
Q Consensus       462 l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il  506 (518)
                      |..+...  .+ ....+      +.|.....+.+.+++..+...|
T Consensus       374 L~~l~~~--~n-v~~iv------~eL~~~l~~~d~e~r~~~v~~I  409 (618)
T 1w63_A          374 SFALVNG--NN-IRGMM------KELLYFLDSCEPEFKADCASGI  409 (618)
T ss_dssp             HHHHCCS--SS-THHHH------HHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHccc--cc-HHHHH------HHHHHHHHhCCHHHHHHHHHHH
Confidence            9988642  11 12222      3333333446667776654444

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.44  E-value=1.6e-11  Score=142.32  Aligned_cols=396  Identities=10%  Similarity=0.122  Sum_probs=263.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080           83 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK  162 (518)
Q Consensus        83 ~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~  162 (518)
                      .+.++++.+.+.|.+.+..|+..|.+.+...... .+.-....+++.|++.|.+. ++..+..|+.+|.+++.+.+.  .
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~-~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~--~   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE--Y   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS-CCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH--H
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccC-CChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH--H
Confidence            4667788888999999999999999977654211 11112245788899999743 466667799999999976544  2


Q ss_pred             HhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH-----HHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHh
Q 010080          163 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR-----NVLLSQGALPPLARMML-PNKGSTVRTAAWALSNL  236 (518)
Q Consensus       163 ~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r-----~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL  236 (518)
                      .+-..++.++..|.+ ++..+|..|+.+|+.++.......     ..-.-..++|.|+..+. +++..++..++.+|..+
T Consensus        83 ~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           83 QVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             HHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            222467888888877 677899999999999985432210     01112346889999998 57889999999999999


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhh
Q 010080          237 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  316 (518)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~a  316 (518)
                      +........ ..  ...+++.+...+.++++.++..++.+|..++...++..    -..+++.++..|....+..++..+
T Consensus       162 ~~~~~~~l~-~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a  234 (1230)
T 1u6g_C          162 LSRQGGLLV-NF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTY  234 (1230)
T ss_dssp             HHHTCSSCT-TT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HHHhHhHHH-HH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHH
Confidence            853211111 11  24678888888988899999999999999997543221    234678888888654445788889


Q ss_pred             hhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc
Q 010080          317 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS  396 (518)
Q Consensus       317 l~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~  396 (518)
                      +.+++.++..........+       ..++|.+...+.+.++.+|..++++++.++...++.....+. .++|.++..+.
T Consensus       235 ~~~l~~l~~~~~~~~~~~l-------~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~  306 (1230)
T 1u6g_C          235 IQCIAAISRQAGHRIGEYL-------EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLT  306 (1230)
T ss_dssp             HHHHHHHHHHSSGGGTTSC-------TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCC
T ss_pred             HHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhC
Confidence            9999999876544333333       369999999999888999999999999998754332222221 24444444442


Q ss_pred             C-------------------------------------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc
Q 010080          397 T-------------------------------------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC  439 (518)
Q Consensus       397 ~-------------------------------------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~  439 (518)
                      .                                     ...++|+.|+.++..++...      |+.    ....+ ..+
T Consensus       307 ~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~------~~~----~~~~~-~~l  375 (1230)
T 1u6g_C          307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR------HEM----LPEFY-KTV  375 (1230)
T ss_dssp             CC------------------------------------CTTHHHHHHHHHHHHHHTTC------CTT----HHHHH-TTT
T ss_pred             CCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc------hhH----HHHHH-HHH
Confidence            1                                     12357889999999988631      111    11111 346


Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCc-------------ch-hHHHh--hchHHHHHHHhcCCCHHHHHHHH
Q 010080          440 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHE-------------GT-KLVER--EDGIDAMERFQFHENEDLRNMAN  503 (518)
Q Consensus       440 i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~-------------~~-~~ie~--~ggl~~l~~L~~~~~~~i~~~a~  503 (518)
                      ++.|...+.+.+..+...++.++..++.......             .+ ..+..  ...++.+.....++++.++..+.
T Consensus       376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~  455 (1230)
T 1u6g_C          376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF  455 (1230)
T ss_dssp             HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence            7888888888888899889998888876422100             00 11111  11234444556778888877776


Q ss_pred             HHHHhh
Q 010080          504 GLVDKY  509 (518)
Q Consensus       504 ~il~~~  509 (518)
                      ..+..+
T Consensus       456 ~~L~~l  461 (1230)
T 1u6g_C          456 NMLTEL  461 (1230)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666544

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.41  E-value=6.7e-12  Score=115.43  Aligned_cols=188  Identities=20%  Similarity=0.214  Sum_probs=155.7

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHH
Q 010080          124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  203 (518)
Q Consensus       124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  203 (518)
                      .+.++.|+.+|.+++ ...+..|+++|..+...         +++|.|+.+|.+ +++.++..|+++|+++..       
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~~---------~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGDE---------RAVEPLIKALKD-EDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCCG---------GGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCc---------cHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-------
Confidence            457899999998654 66777899999987641         468999999987 789999999999999863       


Q ss_pred             HHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC
Q 010080          204 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL  283 (518)
Q Consensus       204 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  283 (518)
                          .+.++.|+.++.++++.++..++|+|..+..             ...+|.|..++.++++.++..++++|..+.. 
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence                2468899999999999999999999999842             2567899999999999999999999999853 


Q ss_pred             CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHH
Q 010080          284 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE  363 (518)
Q Consensus       284 ~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~  363 (518)
                                ...++.|..++ .++++.++..++.+|+.+..                 ..+++.|..++.++++.+|..
T Consensus       142 ----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-----------------~~~~~~L~~~l~d~~~~vr~~  193 (211)
T 3ltm_A          142 ----------ERAVEPLIKAL-KDEDGWVRQSAADALGEIGG-----------------ERVRAAMEKLAETGTGFARKV  193 (211)
T ss_dssp             ----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS-----------------HHHHHHHHHHHHHCCHHHHHH
T ss_pred             ----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc-----------------hhHHHHHHHHHhCCCHHHHHH
Confidence                      24678888888 57888999999999999831                 258899999999999999999


Q ss_pred             HHHHHHHhccCC
Q 010080          364 AAWVLSNIAAGS  375 (518)
Q Consensus       364 a~~~Lsnl~~~~  375 (518)
                      |.++|.++....
T Consensus       194 A~~aL~~~~~~~  205 (211)
T 3ltm_A          194 AVNYLETHKSFN  205 (211)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHHhcCCCC
Confidence            999999997654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.41  E-value=5.3e-11  Score=127.59  Aligned_cols=366  Identities=12%  Similarity=0.055  Sum_probs=197.6

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChH
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP  169 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~  169 (518)
                      .+.+.++..+..|+.++.++....  |.   .+ .+.++.+..+|... ++.++..|+++|..++..+++....+...+|
T Consensus       150 ~L~~~~~~VRk~A~~al~~l~~~~--p~---~v-~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~  222 (618)
T 1w63_A          150 LLKTSNSYLRKKAALCAVHVIRKV--PE---LM-EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHFRKLVP  222 (618)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHHC--GG---GG-GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHHHTTHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHC--hH---HH-HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            334667777777777777765543  21   12 25677777777643 3567777999999998766554344446788


Q ss_pred             HHHHhhcC--------------CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC------CCChhHHHHH
Q 010080          170 LLIAHLGE--------------KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML------PNKGSTVRTA  229 (518)
Q Consensus       170 ~Lv~lL~~--------------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~------~~~~~~~~~a  229 (518)
                      .|+.+|.+              ..++-.+...+.+|+.++..++...+     ..++.|..++.      +.+..+...+
T Consensus       223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea  297 (618)
T 1w63_A          223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYET  297 (618)
T ss_dssp             HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHH
Confidence            88877652              13677788888888888876554322     23333334332      1234555666


Q ss_pred             HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC
Q 010080          230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS  309 (518)
Q Consensus       230 ~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~  309 (518)
                      ++++..+...    +  ...  ..+++.|..++.+.|++++..++++|..++...+.    ++ ......++..+ .+++
T Consensus       298 ~~~i~~l~~~----~--~l~--~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~-~~~~~~i~~~l-~d~d  363 (618)
T 1w63_A          298 VLTIMDIKSE----S--GLR--VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AV-QRHRSTIVDCL-KDLD  363 (618)
T ss_dssp             HHHHHHSCCC----H--HHH--HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HH-GGGHHHHHHGG-GSSC
T ss_pred             HHHHHhcCCC----H--HHH--HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HH-HHHHHHHHHHc-cCCC
Confidence            6666655311    1  111  24455555566656666666666666666542221    11 11233444444 2445


Q ss_pred             ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC---H-HHHHHH---
Q 010080          310 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS---V-EHKQLI---  382 (518)
Q Consensus       310 ~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~---~-~~~~~l---  382 (518)
                      ..++..++.+|..++...+.  .           .+++.|...+.+.+..++..++.+|+.++...   . ..+..+   
T Consensus       364 ~~Ir~~alelL~~l~~~~nv--~-----------~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~l  430 (618)
T 1w63_A          364 VSIKRRAMELSFALVNGNNI--R-----------GMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRV  430 (618)
T ss_dssp             HHHHHHHHHHHHHHCCSSST--H-----------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHcccccH--H-----------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            55555555555555543320  0           24444444554455555555555555555421   0 011111   


Q ss_pred             -------------------Hh------CCCHHHHHHHhcC--CChhHHHHHHHHHHHhcCCCCCC---CCCchhHHHHHH
Q 010080          383 -------------------HS------SEALALLLHLLST--SPFDIKKEVAYVLGNLCVSPTEG---EGKPKLIQEHLV  432 (518)
Q Consensus       383 -------------------i~------~~~i~~Li~lL~~--~~~~v~~eA~~aL~nl~~~~~~~---~~~~~~~~~~~~  432 (518)
                                         +.      ..+++.|+..+.+  ....+.+.++|+|+..+.....+   +..|..      
T Consensus       431 L~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~------  504 (618)
T 1w63_A          431 LTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQ------  504 (618)
T ss_dssp             HHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCC------
T ss_pred             HHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccC------
Confidence                               00      0134556666653  23345556889988875311000   000000      


Q ss_pred             HHHhcCchHHHHHhhc--cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080          433 SLVGRGCLSGFIDLVR--SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK  508 (518)
Q Consensus       433 ~l~~~g~i~~L~~lL~--~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~  508 (518)
                       .-...+++.|..++.  ..++.++..++.++..+....+.  ....+     ...|.....+.|.|++++|...+.-
T Consensus       505 -~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l-----~~~L~~~~~~~d~evrdRA~~y~~l  574 (618)
T 1w63_A          505 -VTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRI-----KKVVSIYGSSIDVELQQRAVEYNAL  574 (618)
T ss_dssp             -CCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHH-----HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHH-----HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence             000113455566665  46788999999999888765443  12222     2235666788999999999876654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.39  E-value=1.6e-11  Score=112.00  Aligned_cols=183  Identities=17%  Similarity=0.226  Sum_probs=155.7

Q ss_pred             CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080          209 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT  288 (518)
Q Consensus       209 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~  288 (518)
                      +..+.++.+|.+++..++..++++|..+..             ...++.|+.+|.++++.++..++++|..+..      
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457889999999999999999999998742             2567889999999999999999999998863      


Q ss_pred             hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHH
Q 010080          289 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL  368 (518)
Q Consensus       289 ~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~L  368 (518)
                           .+.++.|+.+| .++++.++..++++|+++..                 ...++.|..++.++++.+|..|+|+|
T Consensus        75 -----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-----------------~~~~~~L~~~l~d~~~~vr~~a~~aL  131 (201)
T 3ltj_A           75 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD-----------------ERAVEPLIKALKDEDWFVRIAAAFAL  131 (201)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-----------------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc-----------------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                 25678888888 57888999999999999742                 14789999999999999999999999


Q ss_pred             HHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc
Q 010080          369 SNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR  448 (518)
Q Consensus       369 snl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~  448 (518)
                      +++..           ...++.|..++.+.++.+|..|+++|..+..        +             .+++.|..++.
T Consensus       132 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~-------------~~~~~L~~~l~  179 (201)
T 3ltj_A          132 GEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------E-------------RVRAAMEKLAE  179 (201)
T ss_dssp             HHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------H-------------HHHHHHHHHHH
T ss_pred             HHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------h-------------hHHHHHHHHHh
Confidence            99843           2478899999999999999999999999832        1             15778888999


Q ss_pred             cCCHHHHHHHHHHHHHH
Q 010080          449 SADIEAARLGLQFMELV  465 (518)
Q Consensus       449 ~~d~~~~~~~l~~l~~i  465 (518)
                      ++++.+...+.++|..+
T Consensus       180 d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          180 TGTGFARKVAVNYLETH  196 (201)
T ss_dssp             HCCHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999888776

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.26  E-value=2.5e-10  Score=132.36  Aligned_cols=397  Identities=11%  Similarity=0.069  Sum_probs=254.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH----
Q 010080           85 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE----  160 (518)
Q Consensus        85 ~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~----  160 (518)
                      ..+++.+.+.++..+..|+.++..+...-..+    .+ ..+++.|+..|..++ +..+..|+.+|..++..-...    
T Consensus        51 ~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~----~~-~~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~~~~~  124 (1230)
T 1u6g_C           51 KMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY----QV-ETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPASSGS  124 (1230)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH----HH-HHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC-----C
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH----HH-HHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCccccc
Confidence            33455566889999999999999977643221    11 346788888887655 345555889999988433221    


Q ss_pred             --HHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh-hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHh
Q 010080          161 --TKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL  236 (518)
Q Consensus       161 --~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL  236 (518)
                        ..... ..+|.|+..+.++++..+++.|+.+|+.++...+. ...+  ....++.|+..+.+++..++..++.+|..+
T Consensus       125 ~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l  202 (1230)
T 1u6g_C          125 ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHL  202 (1230)
T ss_dssp             CTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence              11222 57899999997436889999999999999842211 1111  123567788888888899999999999999


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCC-hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhh
Q 010080          237 IKGPDPKPATELIKVDGLLDAILRHLKRAD-EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP  315 (518)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~  315 (518)
                      +......    .  ....+|.++..|...+ ..++..++.++..++...+...... -..+++.++..+. +.+++++..
T Consensus       203 ~~~~~~~----~--~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~-d~~~~vR~~  274 (1230)
T 1u6g_C          203 VMSCGNI----V--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCN-VDDDELREY  274 (1230)
T ss_dssp             TTTC----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHS-SCCTTTHHH
T ss_pred             HHhcCHH----H--HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhc-CCCHHHHHH
Confidence            9753221    2  2467888888887543 4677778888888886433322211 1467888888884 678889999


Q ss_pred             hhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-------------------------------------Chh
Q 010080          316 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-------------------------------------EHR  358 (518)
Q Consensus       316 al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-------------------------------------~~~  358 (518)
                      ++.+++.++..........+       ..++|.++..+..                                     ..+
T Consensus       275 a~~~l~~l~~~~~~~~~~~l-------~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  347 (1230)
T 1u6g_C          275 CIQAFESFVRRCPKEVYPHV-------STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSW  347 (1230)
T ss_dssp             HHHHHHHHHHCTTCCCHHHH-------HHHHHHHTTCCCCC------------------------------------CTT
T ss_pred             HHHHHHHHHHHChHHHHHhH-------HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCH
Confidence            99999998865443322222       2355555544421                                     123


Q ss_pred             hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC----CCCc------hhHH
Q 010080          359 VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG----EGKP------KLIQ  428 (518)
Q Consensus       359 ~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~----~~~~------~~~~  428 (518)
                      .+|+.|+.++..++...++....++. .++|.++..+.+.+..+|..|+.++..++......    ++.+      .+ .
T Consensus       348 ~vR~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~  425 (1230)
T 1u6g_C          348 KVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP-L  425 (1230)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH-H
T ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch-H
Confidence            57899999999998754443444443 47899999898888999999999888776421000    0000      00 0


Q ss_pred             HHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCC--HHHHHHHHHHH
Q 010080          429 EHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHEN--EDLRNMANGLV  506 (518)
Q Consensus       429 ~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~--~~i~~~a~~il  506 (518)
                      ..+..++ ..+++.+...|.+.++.++..++.++..++..++... ...+.  ..++.|..+..+++  .+++..+...+
T Consensus       426 ~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l-~~~l~--~ll~~l~~~L~d~~~~~~v~~~a~~~l  501 (1230)
T 1u6g_C          426 TMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL-TQHIP--VLVPGIIFSLNDKSSSSNLKIDALSCL  501 (1230)
T ss_dssp             HHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTT-GGGHH--HHHHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             HHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhh-HHHHH--HHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            1111111 2356677777999999999889999999988754321 11111  22444555555554  47777776666


Q ss_pred             Hhhc
Q 010080          507 DKYF  510 (518)
Q Consensus       507 ~~~f  510 (518)
                      ..++
T Consensus       502 ~~~~  505 (1230)
T 1u6g_C          502 YVIL  505 (1230)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.18  E-value=6.5e-11  Score=128.25  Aligned_cols=199  Identities=15%  Similarity=0.116  Sum_probs=152.0

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHH-hhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      .+.+++..|++ ++++.|..|+|+|+||+. ++..|..++..|++++++ .+|.+++.+++..|+|+|.|||....+..+
T Consensus        35 ~i~Pll~~L~S-~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILPVLKDLKS-PDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHHHHHHHSS-SCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHHHHHHcCC-CCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            34556777887 789999999999999997 789999999999998865 578888999999999999999976444444


Q ss_pred             hhHHHhhchHHHHHHHhccCC---------------------hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHH
Q 010080          246 TELIKVDGLLDAILRHLKRAD---------------------EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL  304 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~~~d---------------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL  304 (518)
                      ..+ ...++++.|..++....                     .++...++++|.+|+.++++..+.+...+.++.|+..|
T Consensus       113 ~~l-~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          113 VHL-YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHH-HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHH-HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            433 46789999998885311                     13456788899999988888888888899999999988


Q ss_pred             ccCC--CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhc
Q 010080          305 ATSN--SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA  372 (518)
Q Consensus       305 ~~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~  372 (518)
                      ....  ..++...|+.+|.+++..++...+.+.+.|   ....+..+..+..+.+ ..+..+|++|.|+.
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~---~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~  257 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQ---ETHVYDVLLKLATGTD-PRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCC---SSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcc---hHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence            5322  346888999999999988877777666543   1223444554444443 45788999999984

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.11  E-value=3.4e-10  Score=122.59  Aligned_cols=196  Identities=14%  Similarity=0.085  Sum_probs=141.0

Q ss_pred             HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHH-hhcCCCCHHHHHHHHHHHHhhhCC-C
Q 010080          123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIA-HLGEKSSSPVAEQCAWALGNVAGE-G  198 (518)
Q Consensus       123 ~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~-lL~~~~~~~v~~~a~~~L~nla~d-~  198 (518)
                      +..++| +++.|+++++ ..+..|+++|+||+.+ +..+..+.  ++|+.++. +|.. ++.+|++.|+|+|+||+.+ +
T Consensus        33 ~~~i~P-ll~~L~S~~~-~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           33 EDKILP-VLKDLKSPDA-KSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             HHTTHH-HHHHHSSSCC-SHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSC
T ss_pred             hhhHHH-HHHHcCCCCH-HHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcC
Confidence            345566 4567887764 4567799999999974 45555555  67776554 5665 7899999999999999965 5


Q ss_pred             hhhHHHHHhcCChhHHHhhhCCC--------------C-------hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH
Q 010080          199 EEFRNVLLSQGALPPLARMMLPN--------------K-------GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA  257 (518)
Q Consensus       199 ~~~r~~~~~~g~i~~L~~ll~~~--------------~-------~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~  257 (518)
                      .+.++.+...|++++|..++...              .       ..+..+++++|++||.+.+  ...+.+...+.+|.
T Consensus       109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~--~~~~~v~~~~~l~~  186 (684)
T 4gmo_A          109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD--EIHEAVATKQTILR  186 (684)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHTCHHHHH
T ss_pred             chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHhcccHHH
Confidence            78999999999999999988521              0       2356678899999997642  23344556788999


Q ss_pred             HHHHhccC---ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc-cCCCccchhhhhhhhhhhh
Q 010080          258 ILRHLKRA---DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA-TSNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       258 L~~lL~~~---d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~-~~~~~~v~~~al~~L~nl~  324 (518)
                      |+.+|.+.   ..++...++.+|..+++.+.+..+.+.+.|....+.-++. ...+...+..++.+|.|+.
T Consensus       187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            99888643   3589999999999999988888888887764432222221 1223334566777888774

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.11  E-value=1.1e-07  Score=101.55  Aligned_cols=330  Identities=10%  Similarity=0.068  Sum_probs=226.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  160 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~  160 (518)
                      +.++.+.+++-.+.+...+.+++..+-.+...+.+-       +.+.+-.++++.+++ ...++-+..++.+++.++++.
T Consensus        37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~-------s~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e~  108 (621)
T 2vgl_A           37 LANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDI-------DFGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSEL  108 (621)
T ss_dssp             HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCC-------CSCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCC-------chhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcHH
Confidence            356666665322357888888888777765544322       346777888888765 445455778888888777654


Q ss_pred             HHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh--CCCChhHHHHHHHHHHHhhc
Q 010080          161 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM--LPNKGSTVRTAAWALSNLIK  238 (518)
Q Consensus       161 ~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~nL~~  238 (518)
                      .   +-++..|.+=|.+ +++-++..|+.+|++|..  ++.-     ...++++.+++  .+.++.+++.|+.++..+++
T Consensus       109 ~---~L~iN~l~kDl~~-~n~~ir~lALr~L~~i~~--~e~~-----~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~  177 (621)
T 2vgl_A          109 I---RLINNAIKNDLAS-RNPTFMGLALHCIANVGS--REMA-----EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR  177 (621)
T ss_dssp             H---HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHCC--HHHH-----HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHhcCC-CCHHHHHHHHHHhhccCC--HHHH-----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            3   2346677777776 799999999999999964  3432     24578899999  78899999999999999997


Q ss_pred             CCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHH----HHccC--C----
Q 010080          239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE----RLATS--N----  308 (518)
Q Consensus       239 ~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~----lL~~~--~----  308 (518)
                      .. |.    .+...++++.+..+|.+.|+.|+..++.+|..++..++....     ..++.++.    ++...  +    
T Consensus       178 ~~-p~----~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~  247 (621)
T 2vgl_A          178 TS-PD----LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSRIVTSASTDLQDY  247 (621)
T ss_dssp             HC-GG----GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHHHHHCCSSSCSTT
T ss_pred             hC-hh----hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHhCCCCCccch
Confidence            42 22    322248999999999999999999999999999975443221     23444443    33211  1    


Q ss_pred             ------CccchhhhhhhhhhhhcCCC-cccceeeccCCCchhhhHHHHHHHh---------ccCh--hhhHHHHHHHHHH
Q 010080          309 ------SLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCL---------KSEH--RVLKKEAAWVLSN  370 (518)
Q Consensus       309 ------~~~v~~~al~~L~nl~~~~~-~~~~~~i~~G~~~~~~~l~~L~~lL---------~~~~--~~i~~~a~~~Lsn  370 (518)
                            ++-.+...++.++.++..++ .....+.        .+++.++..+         .+.+  ..|..+|+.++..
T Consensus       248 ~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--------~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~  319 (621)
T 2vgl_A          248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--------ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIH  319 (621)
T ss_dssp             EETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--------HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--------HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHh
Confidence                  33456677888888775432 2111121        2333333322         2223  3899999999999


Q ss_pred             hccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc-c
Q 010080          371 IAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-S  449 (518)
Q Consensus       371 l~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-~  449 (518)
                      +. ..++..+.     ++..|..+|.+.++.+|.-|+.+|..++...    ..+       ..+  ......++..|. +
T Consensus       320 l~-~~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~----~~~-------~~~--~~~~~~i~~~L~~d  380 (621)
T 2vgl_A          320 HD-SEPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSE----FSH-------EAV--KTHIETVINALKTE  380 (621)
T ss_dssp             HC-CCHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT----TTH-------HHH--HTTHHHHHHHHTTC
T ss_pred             cC-CcHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhcc----CcH-------HHH--HHHHHHHHHHhccC
Confidence            86 34444433     4567888899999999999999999998642    111       112  235677888888 8


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 010080          450 ADIEAARLGLQFMELVL  466 (518)
Q Consensus       450 ~d~~~~~~~l~~l~~il  466 (518)
                      +|+.+...+|+.+..+.
T Consensus       381 ~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          381 RDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             CCHHHHHHHHHHHHHHC
T ss_pred             CCHhHHHHHHHHHHHHc
Confidence            99999999999988885

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.91  E-value=7.1e-08  Score=86.39  Aligned_cols=226  Identities=17%  Similarity=0.098  Sum_probs=170.5

Q ss_pred             hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc
Q 010080          252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI  331 (518)
Q Consensus       252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~  331 (518)
                      .+.+..|..+|+..|+.++..++.+|..+...-+.......-..+++.++.++ .+.+..+...|++||+.+..+.+-.-
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL-SQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCCCCH
Confidence            35788899999999999999999999999976545555555567789999988 68899999999999999998876433


Q ss_pred             ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHH
Q 010080          332 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLG  411 (518)
Q Consensus       332 ~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~  411 (518)
                      ..+.        .+...|..++.+++.-++.+|+-.++-+---++  .     .+++..+..++++.+..+|..|..++.
T Consensus       111 ~~y~--------Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~-----~~V~~~l~sLl~Skd~~vK~agl~~L~  175 (265)
T 3b2a_A          111 KTFL--------KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED--S-----KLVRTYINELVVSPDLYTKVAGFCLFL  175 (265)
T ss_dssp             HHHH--------HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--C-----HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHH--------HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--h-----HHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            3332        367788888998899999999999998832221  1     125667888889999999999999999


Q ss_pred             HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHh
Q 010080          412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQ  491 (518)
Q Consensus       412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~  491 (518)
                      |++..+.    .|+.         -.+++.-+-++|++.|+.++..+|.++..|+...--+  ....+-.+.+.....|.
T Consensus       176 eia~~S~----D~~i---------~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~--~~~~~~~~~~~~v~~l~  240 (265)
T 3b2a_A          176 NMLNSSA----DSGH---------LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE--NVKIELLKISRIVDGLV  240 (265)
T ss_dssp             HHGGGCS----SCCC---------GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS--CCHHHHHHHHHHHHHGG
T ss_pred             HhhcccC----CHHH---------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH--hHHHHHHHHHHHHHHHH
Confidence            9988642    2221         2356778889999999999999999999999753211  11112223344455666


Q ss_pred             -cCCCHHHHHHHHHHHHh
Q 010080          492 -FHENEDLRNMANGLVDK  508 (518)
Q Consensus       492 -~~~~~~i~~~a~~il~~  508 (518)
                       -...|.++.+|..+-+.
T Consensus       241 ~~~~~~~~~~ka~~v~~~  258 (265)
T 3b2a_A          241 YREGAPIIRLKAKKVSDL  258 (265)
T ss_dssp             GCSSCHHHHHHHHHHHHH
T ss_pred             HhcCChhHHHHHHHHHHH
Confidence             66889999999776654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.91  E-value=3e-07  Score=98.19  Aligned_cols=323  Identities=11%  Similarity=0.120  Sum_probs=210.9

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCC
Q 010080           88 VAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPA  167 (518)
Q Consensus        88 l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~  167 (518)
                      ++.++++|.+.+.-+--.+..+...  ++.  .++-  ++..+..=|++++ +..+--|+.+|+++..  ++...   ..
T Consensus        80 vkl~~s~~~~~Krl~YL~l~~~~~~--~~e--~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~---~l  147 (621)
T 2vgl_A           80 VNLLSSNRYTEKQIGYLFISVLVNS--NSE--LIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE---AF  147 (621)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHSCCC--CHH--HHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH---HH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHccC--CcH--HHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH---HH
Confidence            3344688888877777777664332  232  1211  3555666666544 4444458888888864  33222   35


Q ss_pred             hHHHHHhh--cCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          168 LPLLIAHL--GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       168 v~~Lv~lL--~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      +|.+.++|  .+ .++-|+..|+.++.++...+++.   +...+.++.|..+|.++++.++.+|+.++..++... +.  
T Consensus       148 ~~~v~~~l~~~d-~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~-~~--  220 (621)
T 2vgl_A          148 AGEIPKILVAGD-TMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN-PE--  220 (621)
T ss_dssp             TTHHHHHHHCSS-SCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-HH--
T ss_pred             HHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC-hH--
Confidence            67778888  55 78999999999999998755543   222478999999999889999999999999999642 21  


Q ss_pred             hhHHHhhchHHHHH----HHhccC-------------ChhHHHHHHHHHHHhhcCC-chhhhHHHhcCchHHHHHHHccC
Q 010080          246 TELIKVDGLLDAIL----RHLKRA-------------DEELTTEVAWVVVYLSALS-NVATSLLVKSGVLQLLVERLATS  307 (518)
Q Consensus       246 ~~~i~~~~~l~~L~----~lL~~~-------------d~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~~~~Lv~lL~~~  307 (518)
                        .  -...+|.++    +++..+             ++..+...+..|..++..+ ++..+.+.  +++..++..+...
T Consensus       221 --~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~  294 (621)
T 2vgl_A          221 --E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEP  294 (621)
T ss_dssp             --H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSC
T ss_pred             --H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccC
Confidence              1  124445444    444321             5778888888888887532 22233232  2344444333111


Q ss_pred             C--------C--ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHH
Q 010080          308 N--------S--LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE  377 (518)
Q Consensus       308 ~--------~--~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~  377 (518)
                      +        +  ..+.-.+.+++..+....     .++       ..++..|..+|.++++.+|.-|+.+|..++...+.
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~-----~~~-------~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~  362 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHDSEP-----NLL-------VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS  362 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHCCCH-----HHH-------HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCCcH-----HHH-------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc
Confidence            1        2  256666777777764211     112       24778889999989999999999999999876532


Q ss_pred             HHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHH
Q 010080          378 HKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR  456 (518)
Q Consensus       378 ~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~  456 (518)
                       ...+ . ...+.++..|. +.|..++..|+..|..++..            ..+..+     +..|...+...|.+++.
T Consensus       363 -~~~~-~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~------------~Nv~~I-----v~eL~~yl~~~d~~~~~  422 (621)
T 2vgl_A          363 -HEAV-K-THIETVINALKTERDVSVRQRAVDLLYAMCDR------------SNAQQI-----VAEMLSYLETADYSIRE  422 (621)
T ss_dssp             -HHHH-H-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH------------HHHHHH-----HHHHHHHHHHCCHHHHH
T ss_pred             -HHHH-H-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh------------hhHHHH-----HHHHHHHHHhcCHHHHH
Confidence             1122 2 35678888888 99999999999999999762            334443     55667777777887777


Q ss_pred             HHHHHHHHHHc
Q 010080          457 LGLQFMELVLR  467 (518)
Q Consensus       457 ~~l~~l~~il~  467 (518)
                      .+...+..+..
T Consensus       423 ~~v~~I~~la~  433 (621)
T 2vgl_A          423 EIVLKVAILAE  433 (621)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666665553

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.79  E-value=1.1e-07  Score=93.32  Aligned_cols=304  Identities=11%  Similarity=0.134  Sum_probs=176.9

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHh
Q 010080           95 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAH  174 (518)
Q Consensus        95 ~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~l  174 (518)
                      |+....+++..+-.++..+..-+-.+  -+.+.+..+.++.+++ ..+++-....+.+++....    .++=++..|.+=
T Consensus        40 ~~~kc~~~l~kll~l~~~G~~f~~~e--~t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~----e~iLv~Nsl~kD  112 (355)
T 3tjz_B           40 NPRKCAHILTKILYLINQGEHLGTTE--ATEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAE----DVIIVTSSLTKD  112 (355)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCCCHHH--HHHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSS----CGGGGHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCchhH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHH----HHHHHHHHHHhh
Confidence            66666677777777666554322211  1346677778888765 4454546667777775522    233567888888


Q ss_pred             hcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhch
Q 010080          175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGL  254 (518)
Q Consensus       175 L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~  254 (518)
                      +++ +++-++-.|+.+|++|...  +.-+     .+.+++-+.|.+.++.+++.|+.+...|+...     ++.+  .++
T Consensus       113 l~~-~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-----pe~v--~~~  177 (355)
T 3tjz_B          113 MTG-KEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-----FDVV--KRW  177 (355)
T ss_dssp             HHS-SCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-----HHHH--HTT
T ss_pred             cCC-CcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-----HHHH--HHH
Confidence            887 7899999999999999863  2222     24566778888999999999999999998542     3444  489


Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC--CccchhhhhhhhhhhhcCC-Cccc
Q 010080          255 LDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN--SLQLLIPVLRSLGNLVAGD-SSTI  331 (518)
Q Consensus       255 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~--~~~v~~~al~~L~nl~~~~-~~~~  331 (518)
                      ++.+-.++.+.++.++..|+.+|..+...+.         ..+..++..+....  ++-.....++.++.+..++ +...
T Consensus       178 ~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~  248 (355)
T 3tjz_B          178 VNEAQEAASSDNIMVQYHALGLLYHVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD  248 (355)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH
Confidence            9999999999999999999999999986432         13455566554221  2333445667776766655 2221


Q ss_pred             ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHH
Q 010080          332 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLG  411 (518)
Q Consensus       332 ~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~  411 (518)
                                 ..+++.+..+|+|.++.|..||+++|..+......    +. ..++..|..+|.++++.+|-.|+..|.
T Consensus       249 -----------~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~  312 (355)
T 3tjz_B          249 -----------SPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLN  312 (355)
T ss_dssp             -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred             -----------HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence                       24677888889999999999999999988552221    22 235667778888999999999999998


Q ss_pred             HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080          412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ  460 (518)
Q Consensus       412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~  460 (518)
                      .++..      .|+-+         ..+-.-+.+++.++|..+...|+.
T Consensus       313 ~l~~~------~P~~v---------~~~n~~ie~li~d~n~sI~t~Ait  346 (355)
T 3tjz_B          313 KVAMK------HPSAV---------TACNLDLENLVTDANRSIATLAIT  346 (355)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHH------CcHHH---------HHHHHHHHHHccCCcHhHHHHHHH
Confidence            88763      23211         124556778888888877665533

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.74  E-value=9.8e-07  Score=95.95  Aligned_cols=274  Identities=13%  Similarity=0.124  Sum_probs=188.6

Q ss_pred             HHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCC-------CHHHHHHHHHHHHhhhCC
Q 010080          127 IPVLVQCLAF--GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKS-------SSPVAEQCAWALGNVAGE  197 (518)
Q Consensus       127 ip~Lv~~L~~--~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~-------~~~v~~~a~~~L~nla~d  197 (518)
                      +..|-.+|..  .+.+..+..|+.+|+.+..|..+      .++..|...|.+.+       ++.++..|+-.||-+...
T Consensus       394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G  467 (963)
T 4ady_A          394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG  467 (963)
T ss_dssp             HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence            4555555542  23344556699999999887653      13566777776522       267888999999987543


Q ss_pred             ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHH
Q 010080          198 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWV  276 (518)
Q Consensus       198 ~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~  276 (518)
                      +.  +.     .+++.|..++..++..+...++++|.-+.-|..+         ..++..|++.+. ..++.++..++.+
T Consensus       468 S~--~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn---------~~ai~~LL~~~~e~~~e~vrR~aalg  531 (963)
T 4ady_A          468 SA--NI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK---------PEAIHDMFTYSQETQHGNITRGLAVG  531 (963)
T ss_dssp             CC--CH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC---------HHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             CC--CH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC---------HHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            31  11     1356677777766666667899999877555421         234455555543 4567899999999


Q ss_pred             HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHh-cc
Q 010080          277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL-KS  355 (518)
Q Consensus       277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL-~~  355 (518)
                      |+.+.-+.++         .++.+++.|..+.++.++..+..++|--..|+..             ..++..|+..+ .+
T Consensus       532 LGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------------~~aIq~LL~~~~~d  589 (963)
T 4ady_A          532 LALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------------NSAVKRLLHVAVSD  589 (963)
T ss_dssp             HHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------------HHHHHHHHHHHHHC
T ss_pred             HHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------------HHHHHHHHHHhccC
Confidence            9988876553         3556666676567777777777777755444432             23566454444 56


Q ss_pred             ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH
Q 010080          356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL  434 (518)
Q Consensus       356 ~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l  434 (518)
                      .+..+|..|..+|+.|..+.++         .++.++.+| ++.++.+|..|+++|+.++.+      +|.         
T Consensus       590 ~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aG------n~~---------  645 (963)
T 4ady_A          590 SNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAG------KGL---------  645 (963)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS------SCC---------
T ss_pred             CcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccC------CCc---------
Confidence            6678999999999999887742         566677655 678999999999999999863      221         


Q ss_pred             HhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080          435 VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       435 ~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~  470 (518)
                        ..++..|..++.++|..+...|+.+|..|.....
T Consensus       646 --~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          646 --QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             --HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence              1246678888899999999999999999976543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.72  E-value=4.5e-07  Score=98.61  Aligned_cols=237  Identities=17%  Similarity=0.157  Sum_probs=163.7

Q ss_pred             CHHHHHHHhcCCC-------ChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC
Q 010080          126 AIPVLVQCLAFGS-------PDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG  198 (518)
Q Consensus       126 ~ip~Lv~~L~~~~-------~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~  198 (518)
                      ++..|...|..++       .+.++..|+..|+-+..|+.+.     .+++.|...|.. ++..+++.|+.+||-+-..+
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-----ev~e~L~~~L~d-d~~~~~~~AalALGli~vGT  503 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-----EVYEALKEVLYN-DSATSGEAAALGMGLCMLGT  503 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-----HHHHHHHHHHHT-CCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHhc-CCHHHHHHHHHHHhhhhccc
Confidence            3566777776443       2445556888888877554311     135566777766 55677889999999873322


Q ss_pred             hhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHH
Q 010080          199 EEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWV  276 (518)
Q Consensus       199 ~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~  276 (518)
                      .. .      .++..|+..+. ..+..+++.++.+|..+..+.           ...++.+++.|. +.++-++..++.+
T Consensus       504 gn-~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~-----------~e~~~~li~~L~~~~dp~vRygaa~a  565 (963)
T 4ady_A          504 GK-P------EAIHDMFTYSQETQHGNITRGLAVGLALINYGR-----------QELADDLITKMLASDESLLRYGGAFT  565 (963)
T ss_dssp             CC-H------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-----------GGGGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             CC-H------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC-----------hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            11 1      12455555443 457889999999999987663           134456666665 5677888888777


Q ss_pred             HH--HhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHH-Hh
Q 010080          277 VV--YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVK-CL  353 (518)
Q Consensus       277 L~--~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~-lL  353 (518)
                      ++  |...++.         .+++.|++.+..+.+..++..|.-+||.|..++++               .++.++. ++
T Consensus       566 lglAyaGTGn~---------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------------~v~rlv~~L~  621 (963)
T 4ady_A          566 IALAYAGTGNN---------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------------TVPRIVQLLS  621 (963)
T ss_dssp             HHHHTTTSCCH---------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------------SHHHHTTTGG
T ss_pred             HHHHhcCCCCH---------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------------HHHHHHHHHH
Confidence            65  4444443         23455555555567778999999999999877652               3344555 44


Q ss_pred             ccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080          354 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       354 ~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  417 (518)
                      .+.++.+|..|+++++.+++|++..       .++..|..++++.+..|+..|+.+|+.+..+.
T Consensus       622 ~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt  678 (963)
T 4ady_A          622 KSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ  678 (963)
T ss_dssp             GCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred             hcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence            6788999999999999999987521       15667888889999999999999999997753

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.59  E-value=8e-06  Score=70.18  Aligned_cols=213  Identities=14%  Similarity=0.196  Sum_probs=166.6

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      .+..++.+|.. +-..|+..|+..+.+++..-++....+     +..|+.++. +....+......++..+++-+     
T Consensus        33 ~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-----  101 (253)
T 2db0_A           33 VLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-----  101 (253)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC-----
Confidence            78889999987 667899999999999999877765543     345666655 667888888999999999642     


Q ss_pred             hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                      ++.+  .+.+|.+..-..-+|+.+..+..++|..++..++...     .+++..+..++. +++..-+..|+..|+.+..
T Consensus       102 Pe~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smlt-skd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          102 PELV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLS-SKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HHHH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTS-CSSHHHHHHHHHHHHTCCT
T ss_pred             HHHH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhc-CCChHHHHHHHHHHHHHhc
Confidence            3343  5899999999999999999999999999998666443     355677888884 6776556677777776643


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  405 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e  405 (518)
                         .+...+.        -++|.|..+|...+.-+|..|.-+|.+++.-++..+..+++      -++-+.+.+..+++.
T Consensus       174 ---n~~~yv~--------PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~  236 (253)
T 2db0_A          174 ---NSFKYVN--------PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKT  236 (253)
T ss_dssp             ---TTHHHHG--------GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHH
T ss_pred             ---cCccccC--------cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHH
Confidence               3334333        48999999999999999999999999999999886554433      456678888889999


Q ss_pred             HHHHHHHhcC
Q 010080          406 VAYVLGNLCV  415 (518)
Q Consensus       406 A~~aL~nl~~  415 (518)
                      +..+|+.++.
T Consensus       237 V~egL~rl~l  246 (253)
T 2db0_A          237 VKEGISRLLL  246 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888888765

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.54  E-value=6.5e-09  Score=87.60  Aligned_cols=121  Identities=17%  Similarity=0.182  Sum_probs=93.2

Q ss_pred             hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc
Q 010080          252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI  331 (518)
Q Consensus       252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~  331 (518)
                      .+.++.+..+|.++++.++..++|+|..+..  .          .++.|+.+| .++++.++..++++|+++..      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------
Confidence            4678889999999999999999999987643  1          257888888 47889999999999999742      


Q ss_pred             ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHH
Q 010080          332 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLG  411 (518)
Q Consensus       332 ~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~  411 (518)
                                 ...++.|..+|.++++.+|..|+|+|+++.  .+         ..++.|+.++++.+..|+..|+++|.
T Consensus        72 -----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           72 -----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             -----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                       247899999999999999999999999985  22         25788999999999999999999987


Q ss_pred             Hh
Q 010080          412 NL  413 (518)
Q Consensus       412 nl  413 (518)
                      ++
T Consensus       130 ~i  131 (131)
T 1te4_A          130 TH  131 (131)
T ss_dssp             GC
T ss_pred             hC
Confidence            54

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.51  E-value=5.5e-08  Score=81.84  Aligned_cols=120  Identities=18%  Similarity=0.222  Sum_probs=90.9

Q ss_pred             cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080          294 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  373 (518)
Q Consensus       294 ~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~  373 (518)
                      ...++.++.+| +++++.++..|+++|+++.  +                ..++.|..+|.++++.+|..|+|+|+++..
T Consensus        11 ~~~~~~l~~~L-~~~~~~vR~~A~~~L~~~~--~----------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~   71 (131)
T 1te4_A           11 SSGLVPRGSHM-ADENKWVRRDVSTALSRMG--D----------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD   71 (131)
T ss_dssp             ----------C-CSSCCCSSSSCCSSTTSCS--S----------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS
T ss_pred             cccHHHHHHHh-cCCCHHHHHHHHHHHHHhC--c----------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence            45677888888 5788999999999999763  1                135889999999999999999999999852


Q ss_pred             CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHH
Q 010080          374 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE  453 (518)
Q Consensus       374 ~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~  453 (518)
                        +         ..++.|+..|.+.++.||..|+|+|.++..        +             .+++.|..+|.++|+.
T Consensus        72 --~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~-------------~a~~~L~~~l~d~~~~  119 (131)
T 1te4_A           72 --E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------E-------------RVRAAMEKLAETGTGF  119 (131)
T ss_dssp             --H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------H-------------HHHHHHHHHTTSCCTH
T ss_pred             --H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------H-------------HHHHHHHHHHhCCCHH
Confidence              2         247889999999999999999999999842        1             2478899999999999


Q ss_pred             HHHHHHHHHHH
Q 010080          454 AARLGLQFMEL  464 (518)
Q Consensus       454 ~~~~~l~~l~~  464 (518)
                      +...+..+|..
T Consensus       120 vr~~A~~aL~~  130 (131)
T 1te4_A          120 ARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHGGG
T ss_pred             HHHHHHHHHHh
Confidence            99888887754

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.49  E-value=7.1e-07  Score=87.46  Aligned_cols=274  Identities=11%  Similarity=0.060  Sum_probs=156.8

Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  247 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  247 (518)
                      .+..++++.+ ++..++.-+--.+.+++...++.   +   =++..|.+=++++++-++-.|..+|+++...   .    
T Consensus        70 f~~v~kl~~s-~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~----  135 (355)
T 3tjz_B           70 FFAMTKLFQS-NDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---T----  135 (355)
T ss_dssp             HHHHHGGGGC-CCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---T----
T ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---H----
Confidence            3445567776 78899998888888888753221   1   2456677778889999999999999999743   1    


Q ss_pred             HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080          248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD  327 (518)
Q Consensus       248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  327 (518)
                      +  ...+.+.+-+.|.+.++-|+..|+.+...|....++..+     +.+..+-+++ .+.++.++..|+.++..+...+
T Consensus       136 m--~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          136 M--LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             T--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             H--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence            2  246778899999999999999999999999976654432     5788888888 4678888888999998887543


Q ss_pred             CcccceeeccCCCchhhhHHHHHHHhccC---hhhhHHHHHHHHHHhccCC-HHHHHHHHhCCCHHHHHHHhcCCChhHH
Q 010080          328 SSTISDVLVPGHGITDQVIAVLVKCLKSE---HRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTSPFDIK  403 (518)
Q Consensus       328 ~~~~~~~i~~G~~~~~~~l~~L~~lL~~~---~~~i~~~a~~~Lsnl~~~~-~~~~~~li~~~~i~~Li~lL~~~~~~v~  403 (518)
                      .               ..+..|+.-+...   ++..+-.....++.++.++ ++     ....+++.|...|++.+..|.
T Consensus       208 ~---------------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVv  267 (355)
T 3tjz_B          208 R---------------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVV  267 (355)
T ss_dssp             H---------------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHH
T ss_pred             h---------------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHH
Confidence            1               2444555544432   2333333333333333332 12     123467788888999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhch
Q 010080          404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDG  483 (518)
Q Consensus       404 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~gg  483 (518)
                      .||+.+|..+...+              ..+. ..++..|-.+|.++|+.++-.+|+.|..+....+     ..+..+. 
T Consensus       268 yEa~k~I~~l~~~~--------------~~~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-----~~v~~~n-  326 (355)
T 3tjz_B          268 YEAASAIVNLPGCS--------------AKEL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-----SAVTACN-  326 (355)
T ss_dssp             HHHHHHHTC--------------------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------
T ss_pred             HHHHHHHHhccCCC--------------HHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-----HHHHHHH-
Confidence            99999999985421              0111 2356677788889999999999999988876543     3344332 


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHH
Q 010080          484 IDAMERFQFHENEDLRNMANGL  505 (518)
Q Consensus       484 l~~l~~L~~~~~~~i~~~a~~i  505 (518)
                       .-|+.|..++|..|...|.--
T Consensus       327 -~~ie~li~d~n~sI~t~Aitt  347 (355)
T 3tjz_B          327 -LDLENLVTDANRSIATLAITT  347 (355)
T ss_dssp             ----------------------
T ss_pred             -HHHHHHccCCcHhHHHHHHHH
Confidence             357888999999999888543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.49  E-value=1e-06  Score=82.44  Aligned_cols=184  Identities=15%  Similarity=0.161  Sum_probs=139.1

Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHH
Q 010080          213 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLL  291 (518)
Q Consensus       213 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~  291 (518)
                      .+...+.+.+...++.++..|..++.+. +......  ...+++.|..++. +.+..++..++.++..|+..-...+...
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~--~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGE--YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCC--CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCC--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4667778889999999999999998762 1111111  1367888999995 8899999999999999996422222221


Q ss_pred             HhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHh
Q 010080          292 VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI  371 (518)
Q Consensus       292 ~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl  371 (518)
                       -..+++.++..+. +.+..++..+..+|.+++....      +       ..+++.+...+.+.++.+|.+++..|+.+
T Consensus        96 -~~~ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~~~~------~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~  160 (242)
T 2qk2_A           96 -ASACVPSLLEKFK-EKKPNVVTALREAIDAIYASTS------L-------EAQQESIVESLSNKNPSVKSETALFIARA  160 (242)
T ss_dssp             -HHHHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTSC------H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCC------H-------HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             2346888888884 6788899999999999986432      1       24889999999999999999999999996


Q ss_pred             ccC-CHHH-HHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          372 AAG-SVEH-KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       372 ~~~-~~~~-~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      ... .++. ....+. .++|.|..+|.+.+.+||..|..+++.++.
T Consensus       161 l~~~~~~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          161 LTRTQPTALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HTTCCGGGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            543 3332 122223 489999999999999999999999999864

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.38  E-value=6.6e-06  Score=77.19  Aligned_cols=192  Identities=11%  Similarity=0.054  Sum_probs=137.7

Q ss_pred             HhhhCCCChhHHHHHHHHHHH-hhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHHHHHHHhhcCCc-hhhhHH
Q 010080          215 ARMMLPNKGSTVRTAAWALSN-LIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVYLSALSN-VATSLL  291 (518)
Q Consensus       215 ~~ll~~~~~~~~~~a~~~L~n-L~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~-~~~~~~  291 (518)
                      ...+.+.+..-+..++-.|.. ++.+. ++.......-..++..|.+.+ .+.+..++..++.+|+.|+.+-. ..+..-
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            445678889999999999999 88552 222100000135677888888 68888999999999999996432 222201


Q ss_pred             HhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccce-eeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHH
Q 010080          292 VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD-VLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN  370 (518)
Q Consensus       292 ~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~-~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsn  370 (518)
                      .-.-+++.+++.+. +....++..+..++-.++...+..... .+       ..+++.|...|.+.++.+|.+++.+|+.
T Consensus       101 y~~~llp~ll~~l~-dkk~~V~~aa~~al~~i~~~~~~~~~~~~l-------~~ll~~l~~~l~~k~~~vk~~al~~l~~  172 (249)
T 2qk1_A          101 YVSLVFTPLLDRTK-EKKPSVIEAIRKALLTICKYYDPLASSGRN-------EDMLKDILEHMKHKTPQIRMECTQLFNA  172 (249)
T ss_dssp             HHHHHHHHHHHGGG-CCCHHHHHHHHHHHHHHHHHSCTTCTTCTT-------HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHccccccCCcH-------HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            11236888898884 667778888888888888654321111 02       2488999999999999999999999998


Q ss_pred             hccCCH---HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          371 IAAGSV---EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       371 l~~~~~---~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      ++....   ......+...++|.|..+|.+.+..||..|..+++.++.
T Consensus       173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            875433   444445534699999999999999999999999988853

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.37  E-value=2.7e-06  Score=79.46  Aligned_cols=181  Identities=14%  Similarity=0.155  Sum_probs=131.1

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CCh
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PAL  168 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v  168 (518)
                      .+.+.+...+..|+..|..++.....-....+  ..+++.|...|..+.+..++..|+.++..++.+-.......+ ..+
T Consensus        23 ~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~il  100 (242)
T 2qk2_A           23 KLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACV  100 (242)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             hhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            33588999999999999998876221100001  245777888885234455666799999999953222222333 589


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCc-hhh
Q 010080          169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP-ATE  247 (518)
Q Consensus       169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~  247 (518)
                      |.++..+.+ .+..+++.|..+|.+++...+ ..      .++|.|...+++.++.++..++..|..+.....|.. ...
T Consensus       101 p~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~  172 (242)
T 2qk2_A          101 PSLLEKFKE-KKPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK  172 (242)
T ss_dssp             HHHHHGGGC-CCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence            999999987 789999999999999987432 21      257788888888899999999999999654432221 112


Q ss_pred             HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      .  ...++|.|+.++.+.+.+++..+.-++..++.
T Consensus       173 ~--l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          173 L--LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             H--HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            2  24789999999999999999999999988885

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.33  E-value=6.9e-06  Score=73.66  Aligned_cols=185  Identities=16%  Similarity=0.173  Sum_probs=142.4

Q ss_pred             cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080          294 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  373 (518)
Q Consensus       294 ~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~  373 (518)
                      .+.+..|..+| +..++.++..++.+|+.+...-+......+      -..+++.++.++.+.+..+.-.|+.++.-|..
T Consensus        32 e~~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~------~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe  104 (265)
T 3b2a_A           32 KRALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMV------LERHLDVFINALSQENEKVTIKALRALGYLVK  104 (265)
T ss_dssp             HHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHH------HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHH------HHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence            35678888888 578889999999999999987544333222      13689999999999999999999999999998


Q ss_pred             CC---HHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC
Q 010080          374 GS---VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA  450 (518)
Q Consensus       374 ~~---~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~  450 (518)
                      +.   ++....     +...|.+++++++.-++.+|+..++-+-..      ++           ..+++..+.+++.+.
T Consensus       105 ~vpL~~~~y~K-----l~~aL~dlik~~~~il~~eaae~Lgklkv~------~~-----------~~~V~~~l~sLl~Sk  162 (265)
T 3b2a_A          105 DVPMGSKTFLK-----AAKTLVSLLESPDDMMRIETIDVLSKLQPL------ED-----------SKLVRTYINELVVSP  162 (265)
T ss_dssp             TCCBCHHHHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS------CC-----------CHHHHHHHHHHHTCS
T ss_pred             CCCCCHHHHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcCCcc------cc-----------hHHHHHHHHHHHhCC
Confidence            74   343333     455789999999999999999999998221      11           113567788899999


Q ss_pred             CHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080          451 DIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE  512 (518)
Q Consensus       451 d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~  512 (518)
                      |++++..++.++.+|...-.+...   ++  +.++-+-.+..++|+.+.++|..+++..++.
T Consensus       163 d~~vK~agl~~L~eia~~S~D~~i---~~--~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          163 DLYTKVAGFCLFLNMLNSSADSGH---LT--LILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             SHHHHHHHHHHHHHHGGGCSSCCC---GG--GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             ChhHHHHHHHHHHHhhcccCCHHH---HH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            999999999999999865443211   11  2234477778999999999999999998765

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.33  E-value=0.00013  Score=73.15  Aligned_cols=320  Identities=14%  Similarity=0.106  Sum_probs=188.1

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCC-cHHHH-HHcCCHHH-HHHHhcCCCChHHHHH-HHHHHHHHhcCC
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFP-PIETA-LKAGAIPV-LVQCLAFGSPDEQLLE-AAWCLTNIAAGK  157 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~-~~~~~-i~~g~ip~-Lv~~L~~~~~~~~~~e-A~~~L~nia~~~  157 (518)
                      ..+..++.  ...+.+..-..+.-+..++...+.. ..-.+ .+..-.+. +...+...+ +..... |..+++.++...
T Consensus        80 ~~~l~lL~--~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~d-d~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           80 IPLIHLLS--TSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGD-FQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             HHHHHHHH--SCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSS-HHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHh--hcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhccc-chHHHHHHHHHHHHHhccC
Confidence            34555555  3455666777778888888764311 22222 33322221 222222222 223233 555555555333


Q ss_pred             hHHHHHhcCChH--HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcC--ChhHHHhhhCC-------------
Q 010080          158 QEETKALLPALP--LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLARMMLP-------------  220 (518)
Q Consensus       158 ~~~~~~v~~~v~--~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~ll~~-------------  220 (518)
                      ....+.+-..+.  .++..|.+.++.+.+..|+.+|..+.. .+++|..+.+.+  .+|+++.++..             
T Consensus       157 ~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~  235 (480)
T 1ho8_A          157 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  235 (480)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             CccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence            322222212223  466666653345667789999999988 789999887654  36777554331             


Q ss_pred             -C---ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchH--HHHHHHhc-cCChhHHHHHHHHHHHhhcCCc----hhhh
Q 010080          221 -N---KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL--DAILRHLK-RADEELTTEVAWVVVYLSALSN----VATS  289 (518)
Q Consensus       221 -~---~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l--~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~----~~~~  289 (518)
                       +   ...++..++.|++-|+..+  ....++ ...++.  +.|+.+++ +..+.|..-++.+|.|+....+    ....
T Consensus       236 ~~~~~~~Ql~Y~~ll~iWlLSF~~--~~~~~l-~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          236 NSNHLGIQLQYHSLLLIWLLTFNP--VFANEL-VQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTSH--HHHHHH-HTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHcCH--HHHHHH-HhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence             1   2566788899999998652  233333 233332  55666666 4557899999999999997542    1222


Q ss_pred             -HHHhcCchHHHHHHHcc--CCCccchhhhhhhhhhhh--------cC--------------CCccc---------ceee
Q 010080          290 -LLVKSGVLQLLVERLAT--SNSLQLLIPVLRSLGNLV--------AG--------------DSSTI---------SDVL  335 (518)
Q Consensus       290 -~~~~~g~~~~Lv~lL~~--~~~~~v~~~al~~L~nl~--------~~--------------~~~~~---------~~~i  335 (518)
                       .++..++ .+++..|..  -.++++.. -+..|....        +.              ++..+         ..+-
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~e-dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQ-DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence             2333344 445555542  12333322 122221111        00              01110         1111


Q ss_pred             ccCCCchhhhHHHHHHHhcc----------ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080          336 VPGHGITDQVIAVLVKCLKS----------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  405 (518)
Q Consensus       336 ~~G~~~~~~~l~~L~~lL~~----------~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e  405 (518)
                      +.    +..++..|+.+|.+          .++.+..-||.=|+.++...|.-+..+-+.|+=..++++|.+.|++||++
T Consensus       391 e~----~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~  466 (480)
T 1ho8_A          391 KD----NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYE  466 (480)
T ss_dssp             SG----GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHH
T ss_pred             hc----chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence            11    34678899999973          46788999999999999988877777777899999999999999999999


Q ss_pred             HHHHHHHhc
Q 010080          406 VAYVLGNLC  414 (518)
Q Consensus       406 A~~aL~nl~  414 (518)
                      |+.|+.-+.
T Consensus       467 AL~avQklm  475 (480)
T 1ho8_A          467 ALKATQAII  475 (480)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987664

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.29  E-value=2.6e-06  Score=80.01  Aligned_cols=200  Identities=11%  Similarity=0.053  Sum_probs=139.9

Q ss_pred             HHHHHhccCChhHHHHHHHHHHH-hhcCCchhhhHHHh-cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC-cccc-
Q 010080          257 AILRHLKRADEELTTEVAWVVVY-LSALSNVATSLLVK-SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STIS-  332 (518)
Q Consensus       257 ~L~~lL~~~d~~v~~~a~~~L~~-L~~~~~~~~~~~~~-~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~-  332 (518)
                      .+...+.+.+-.-+..++-.|.. ++.+.+.....-.+ ..++..|...+....+..++..|+.+|+.++.+-. .... 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35566778888888999999998 87543322100001 24466777777446778889999999999996543 2222 


Q ss_pred             eeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHH-HhCCCHHHHHHHhcCCChhHHHHHHHHHH
Q 010080          333 DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI-HSSEALALLLHLLSTSPFDIKKEVAYVLG  411 (518)
Q Consensus       333 ~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~l-i~~~~i~~Li~lL~~~~~~v~~eA~~aL~  411 (518)
                      ...       ..++|.++..+.+.++.++..+..++-+++...+.....- ++ .+++.|+..|++.++.+|.+++.+|.
T Consensus       100 ~y~-------~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~  171 (249)
T 2qk1_A          100 DYV-------SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFN  171 (249)
T ss_dssp             HHH-------HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            222       2489999999999889999999999988876331110000 00 26778899999999999999999999


Q ss_pred             HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC
Q 010080          412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN  471 (518)
Q Consensus       412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~  471 (518)
                      .++....   ..|    ++....+...+++.|..++...++++...+.+++..+.+..++
T Consensus       172 ~~~~~~~---~~~----~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~  224 (249)
T 2qk1_A          172 ASMKEEK---DGY----STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM  224 (249)
T ss_dssp             HHHHHCC---SCS----HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHcC---Ccc----hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence            9986421   112    2222333357899999999999999999999999999876544

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.18  E-value=3.9e-05  Score=76.96  Aligned_cols=235  Identities=15%  Similarity=0.098  Sum_probs=151.2

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC----ChHHHHHhhc----------------CCCCHHHHHHHH
Q 010080          129 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP----ALPLLIAHLG----------------EKSSSPVAEQCA  188 (518)
Q Consensus       129 ~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~----~v~~Lv~lL~----------------~~~~~~v~~~a~  188 (518)
                      .++..|...+....+.-++.+|..+... ++.+..+..    .+|.++..+.                +....+++.+++
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            4555565432233345588888888764 345555542    3666654332                112478899999


Q ss_pred             HHHHhhhCCChhhHHHHHhcCCh--hHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCch----hhHHHhhchHHHHHHH
Q 010080          189 WALGNVAGEGEEFRNVLLSQGAL--PPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPA----TELIKVDGLLDAILRH  261 (518)
Q Consensus       189 ~~L~nla~d~~~~r~~~~~~g~i--~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~----~~~i~~~~~l~~L~~l  261 (518)
                      .|++-++. +++..+.+...++.  +.|+.+++ +....+.|.++.+|.|+.... ++..    .+++...++++ ++..
T Consensus       250 l~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~-~~~~~~~~~~~~~~~~~l~-~l~~  326 (480)
T 1ho8_A          250 LLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR-VKQHKKVIKQLLLLGNALP-TVQS  326 (480)
T ss_dssp             HHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSS-STTHHHHHHHHHHHHCHHH-HHHH
T ss_pred             HHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhccc-chhhhhHHHHHHHHccchH-HHHH
Confidence            99999998 45566667666643  55666666 458999999999999999643 2111    22333345555 4444


Q ss_pred             hc---cCChhHHHHHHHHHHHhhc---------------------CCchhhh---------HHH--hcCchHHHHHHHcc
Q 010080          262 LK---RADEELTTEVAWVVVYLSA---------------------LSNVATS---------LLV--KSGVLQLLVERLAT  306 (518)
Q Consensus       262 L~---~~d~~v~~~a~~~L~~L~~---------------------~~~~~~~---------~~~--~~g~~~~Lv~lL~~  306 (518)
                      |.   ..|+++..+.-+....|..                     .++.+..         .+.  +..+++.|+++|.+
T Consensus       327 L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~  406 (480)
T 1ho8_A          327 LSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQA  406 (480)
T ss_dssp             HHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHH
T ss_pred             HhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhh
Confidence            44   5677777665544332221                     1222221         111  12467889999952


Q ss_pred             ---------CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080          307 ---------SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  373 (518)
Q Consensus       307 ---------~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~  373 (518)
                               +.++.++.-||.=||.++...+.....+-      +.|+-..++.+|.|+++.||++|..++.-+..
T Consensus       407 ~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~------~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          407 KVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD------KTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH------HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             hccccccccCCCcceEEeecccHHHHHHHCcchhHHHH------HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                     23677888899999999988876655443      34688999999999999999999999987643

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.13  E-value=0.00058  Score=76.92  Aligned_cols=338  Identities=13%  Similarity=0.078  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhc---------------CCCChHHHHHHHHHHHHHhcCCh--H
Q 010080           97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA---------------FGSPDEQLLEAAWCLTNIAAGKQ--E  159 (518)
Q Consensus        97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~---------------~~~~~~~~~eA~~~L~nia~~~~--~  159 (518)
                      +....++.++..++.... -|..  ....++|.+.. |.               ..+.+.....|+.+|..+.....  +
T Consensus       204 ~~~~~al~~l~~~~~~~~-ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  279 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIG-YTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN  279 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred             hHHHHHHHHHHHHHhhCC-cCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence            567778888887766311 1222  34566777776 41               01223443458999999986432  1


Q ss_pred             HHHHhcCChHHHHHhh-------cCCCC---HHHHHHHHHHHHhhhCCChh-hH-----------HHHHhcCChhHHHhh
Q 010080          160 ETKALLPALPLLIAHL-------GEKSS---SPVAEQCAWALGNVAGEGEE-FR-----------NVLLSQGALPPLARM  217 (518)
Q Consensus       160 ~~~~v~~~v~~Lv~lL-------~~~~~---~~v~~~a~~~L~nla~d~~~-~r-----------~~~~~~g~i~~L~~l  217 (518)
                      ....+...+|.++.+.       .. .+   .+.....+..+..++..... +.           ..+  ...++.|+.+
T Consensus       280 ~~~~~~~l~~~~~~~~~~~~~~~~~-~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~  356 (971)
T 2x1g_F          280 YPKTAFVLIKMFLDSLSEITKTEWK-RENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHC  356 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSS-SSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHH
Confidence            1122223444444422       22 23   25555556666555532111 11           111  1345555555


Q ss_pred             hCC-----CChhHHHHHHHHHHHhhcCC-------CCCchhhHHH--hhchHHHHHHHhccCCh---------------h
Q 010080          218 MLP-----NKGSTVRTAAWALSNLIKGP-------DPKPATELIK--VDGLLDAILRHLKRADE---------------E  268 (518)
Q Consensus       218 l~~-----~~~~~~~~a~~~L~nL~~~~-------~~~~~~~~i~--~~~~l~~L~~lL~~~d~---------------~  268 (518)
                      ...     .+..+...+++.++.+++..       ........+.  -...++.++..+..+++               +
T Consensus       357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~  436 (971)
T 2x1g_F          357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC  436 (971)
T ss_dssp             HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred             HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence            433     36788999999988887510       1111111111  12444555544432211               2


Q ss_pred             HHHHHHHHHHHhhcCCc-hhhhHHHhcCchHHHHHHHcc----CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchh
Q 010080          269 LTTEVAWVVVYLSALSN-VATSLLVKSGVLQLLVERLAT----SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD  343 (518)
Q Consensus       269 v~~~a~~~L~~L~~~~~-~~~~~~~~~g~~~~Lv~lL~~----~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~  343 (518)
                      .+..+.-+|..++.... .....+     ++.+-..+..    ..+...+..++.++|.++.+-.......+       .
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l-------~  504 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI-------P  504 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH-------H
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH-------H
Confidence            34455556655554222 111111     2222233321    24667788999999999877543322222       1


Q ss_pred             hhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 010080          344 QVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG  422 (518)
Q Consensus       344 ~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~  422 (518)
                      .+++.+..+.. ..++.+|..+||+++.++..-..+.+.+-  .+++.|+..| +  +.|+..|++++.++|...     
T Consensus       505 ~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~-----  574 (971)
T 2x1g_F          505 RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGL-N--SSMSAQATLGLKELCRDC-----  574 (971)
T ss_dssp             HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH-----
Confidence            34443333332 24789999999999988742111111111  2456677777 2  789999999999998642     


Q ss_pred             CchhHHHHHHHHHhcCchHHHHHhhcc--CCHHHHHHHHHHHHHHHccC
Q 010080          423 KPKLIQEHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       423 ~~~~~~~~~~~l~~~g~i~~L~~lL~~--~d~~~~~~~l~~l~~il~~~  469 (518)
                       +    ..+...+ ..++..|..++..  -+.+....+++++..++...
T Consensus       575 -~----~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          575 -Q----LQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             -H----HHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             -H----HhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence             1    1111111 2356667777776  35778888888888887654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.06  E-value=0.0029  Score=71.11  Aligned_cols=309  Identities=12%  Similarity=0.105  Sum_probs=161.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCCCC--------CcHHHHHHcCCHHHHHHH-------hcCCCCh--------H
Q 010080           85 KSAVAYHGKGAMQKRVNALRELRRLLSRFEF--------PPIETALKAGAIPVLVQC-------LAFGSPD--------E  141 (518)
Q Consensus        85 ~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~--------~~~~~~i~~g~ip~Lv~~-------L~~~~~~--------~  141 (518)
                      ..+++.++++|+..+..++..+..+....+.        +.+..++ ....|.++++       +..+..+        .
T Consensus       126 ~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l-~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~  204 (960)
T 1wa5_C          126 SDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVL-DVFTAPFLNLLKTVDEQITANENNKASLNILFD  204 (960)
T ss_dssp             HHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            4445566778888888899999887654321        1122223 2235544443       3332211        1


Q ss_pred             HHHHHHHHHHHHhc-CChHHHHHhc-CChHHHHHhhcCC-----CC---------HHHHHHHHHHHHhhhCCCh-hhHHH
Q 010080          142 QLLEAAWCLTNIAA-GKQEETKALL-PALPLLIAHLGEK-----SS---------SPVAEQCAWALGNVAGEGE-EFRNV  204 (518)
Q Consensus       142 ~~~eA~~~L~nia~-~~~~~~~~v~-~~v~~Lv~lL~~~-----~~---------~~v~~~a~~~L~nla~d~~-~~r~~  204 (518)
                      ....++.++.++.. +.++.....+ ..++.+..+|...     .+         ..++..++.+|..++...+ .++..
T Consensus       205 ~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~  284 (960)
T 1wa5_C          205 VLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPM  284 (960)
T ss_dssp             HHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11224555555542 2233222222 3556666666431     01         2466666777777664222 22221


Q ss_pred             HHhcCChhHHHhhhC-----CCChhHHHHHHHHHHHhhcCCCCCchhhHHH----hhchH-HHHHHHhcc---------C
Q 010080          205 LLSQGALPPLARMML-----PNKGSTVRTAAWALSNLIKGPDPKPATELIK----VDGLL-DAILRHLKR---------A  265 (518)
Q Consensus       205 ~~~~g~i~~L~~ll~-----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~----~~~~l-~~L~~lL~~---------~  265 (518)
                      +  ...++....++.     .....+...++-.+..+++.+   .....+.    ...++ +.++..+..         +
T Consensus       285 ~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~---~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~  359 (960)
T 1wa5_C          285 I--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP---KYFEIFNNESAMNNITEQIILPNVTLREEDVELFED  359 (960)
T ss_dssp             H--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH---HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTT
T ss_pred             H--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH---hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhc
Confidence            1  123444455443     235677888888888887542   1111211    12333 333344321         1


Q ss_pred             Ch--------------hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-----CCCccchhhhhhhhhhhhcC
Q 010080          266 DE--------------ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAG  326 (518)
Q Consensus       266 d~--------------~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~  326 (518)
                      |+              ..+..+.-+|..++....   +.++ ..+++.+...+..     +.+...+..|+.++|.++.+
T Consensus       360 dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~  435 (960)
T 1wa5_C          360 DPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN  435 (960)
T ss_dssp             CHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBS
T ss_pred             CHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH
Confidence            11              234455555655554221   1111 1122333333421     34556778999999999754


Q ss_pred             C---Ccccc---eeeccCCCchhhhHH----HHHHHhccC---hhhhHHHHHHHHHHhccCC-HHHHHHHHhCCCHHHHH
Q 010080          327 D---SSTIS---DVLVPGHGITDQVIA----VLVKCLKSE---HRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLL  392 (518)
Q Consensus       327 ~---~~~~~---~~i~~G~~~~~~~l~----~L~~lL~~~---~~~i~~~a~~~Lsnl~~~~-~~~~~~li~~~~i~~Li  392 (518)
                      .   +....   ..+        .+.+    .+...+.++   ++.+|..|||+++.++..- +++.     ..+++.++
T Consensus       436 ~~~~~~~~~~~~~~~--------~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l-----~~~l~~l~  502 (960)
T 1wa5_C          436 GNITNAGVSSTNNLL--------NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL-----IELMPILA  502 (960)
T ss_dssp             SCCBTTBCCCBCTTC--------CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH-----HHHHHHHH
T ss_pred             hccccCCcccccccc--------cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH-----HHHHHHHH
Confidence            2   10110   111        1323    344445655   8899999999999997642 2222     12678888


Q ss_pred             HHhcCCChhHHHHHHHHHHHhcCC
Q 010080          393 HLLSTSPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       393 ~lL~~~~~~v~~eA~~aL~nl~~~  416 (518)
                      +.|.+.+..|+..|++||.+++..
T Consensus       503 ~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          503 TFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCCChhHHHHHHHHHHHHHhc
Confidence            899888899999999999999863

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.06  E-value=0.00076  Score=74.37  Aligned_cols=296  Identities=11%  Similarity=0.122  Sum_probs=197.4

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC---hHHHHH
Q 010080           87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK---QEETKA  163 (518)
Q Consensus        87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~---~~~~~~  163 (518)
                      +++.+...+......|...+..++.......   .+..+++..|...+....+.   ..|+.++..+|...   +..--.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~   92 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPY   92 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccc
Confidence            4444445445666788888888776442111   12236777788887643222   34888888888332   222233


Q ss_pred             hcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhhcCCCC
Q 010080          164 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDP  242 (518)
Q Consensus       164 v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~  242 (518)
                      +++.+|.++..+.. ....|+..|..++..|+...+...-    ..++|.|+..|.+. .......|+.++..|+... |
T Consensus        93 ~~~~~~~~~~~~~d-k~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~  166 (986)
T 2iw3_A           93 IVQLVPAICTNAGN-KDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-K  166 (986)
T ss_dssp             HHTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-H
T ss_pred             hHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-H
Confidence            34889999999877 6788999988888877653333221    34588888888755 6888999999999999642 2


Q ss_pred             CchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc-CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080          243 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA-LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  321 (518)
Q Consensus       243 ~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~-~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~  321 (518)
                      .  .-......++|.+...+.+..++|...+.-++..+|. -++..+     ...+|.|++.+. ++  +-...++..|+
T Consensus       167 ~--~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~-~p--~~~~~~~~~l~  236 (986)
T 2iw3_A          167 D--QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIA-DP--TEVPETVHLLG  236 (986)
T ss_dssp             H--HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHH-CT--THHHHHHHHHT
T ss_pred             H--HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhc-Ch--hhhHHHHHHhh
Confidence            1  1112345789999999999999999999999888885 122222     255788898885 44  33455566666


Q ss_pred             hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc--CCHHHHHHHHhCCCHHHHHHHhc-CC
Q 010080          322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLS-TS  398 (518)
Q Consensus       322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~--~~~~~~~~li~~~~i~~Li~lL~-~~  398 (518)
                      ..+.-.. .+...+       .=.+|.|..-|......+++.++-++.|+|.  .++.....++. .++|-|-.... ..
T Consensus       237 ~~tfv~~-v~~~~l-------~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~  307 (986)
T 2iw3_A          237 ATTFVAE-VTPATL-------SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIA  307 (986)
T ss_dssp             TCCCCSC-CCHHHH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCC
T ss_pred             cCeeEee-ecchhH-------HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccC
Confidence            5432221 111111       1245666666677788899999999999997  46766666665 48888888884 47


Q ss_pred             ChhHHHHHHHHHHHh
Q 010080          399 PFDIKKEVAYVLGNL  413 (518)
Q Consensus       399 ~~~v~~eA~~aL~nl  413 (518)
                      ++++|.-|..|+..+
T Consensus       308 ~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          308 DPEAREVTLRALKTL  322 (986)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            899998887777766

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.02  E-value=0.0015  Score=73.39  Aligned_cols=340  Identities=12%  Similarity=0.128  Sum_probs=178.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHH-HHhcCCCChHHHHHHHHHHHHHhcCC---h--HHHHHhcC
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV-QCLAFGSPDEQLLEAAWCLTNIAAGK---Q--EETKALLP  166 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv-~~L~~~~~~~~~~eA~~~L~nia~~~---~--~~~~~v~~  166 (518)
                      +++++....++.++..+++.   -|+..+++.++++.+. .+|..   +.....|+.||+.+.+..   +  .....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            45566777788999998874   4567788999999999 99863   445556999999998732   2  11212221


Q ss_pred             ChHHHHH---------------hh--cCCCCHHHHHHHHHHHHhhhC-------CChhhHHHHHhcCChhHHHhhhCCCC
Q 010080          167 ALPLLIA---------------HL--GEKSSSPVAEQCAWALGNVAG-------EGEEFRNVLLSQGALPPLARMMLPNK  222 (518)
Q Consensus       167 ~v~~Lv~---------------lL--~~~~~~~v~~~a~~~L~nla~-------d~~~~r~~~~~~g~i~~L~~ll~~~~  222 (518)
                      .++.++.               .+  ....+.+..+.-+..+..+..       ..+..+..+.  .++..|+.+-..++
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~~~~d  357 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLSKIEE  357 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhhCCCc
Confidence            1111111               11  111245555555555544332       1122222211  11223444334456


Q ss_pred             hhHHHHHHHHHHHhhcC--CCCCchhhHHH--hhchHHHHHHHhccCC--------------------hhH--HHHHHHH
Q 010080          223 GSTVRTAAWALSNLIKG--PDPKPATELIK--VDGLLDAILRHLKRAD--------------------EEL--TTEVAWV  276 (518)
Q Consensus       223 ~~~~~~a~~~L~nL~~~--~~~~~~~~~i~--~~~~l~~L~~lL~~~d--------------------~~v--~~~a~~~  276 (518)
                      .++...+.-.=+.|+..  .++ .......  -...++.+++-+..++                    ++.  -...=-+
T Consensus       358 ~ei~~~tl~FW~~L~~~l~~e~-~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          358 RELFKTTLDYWHNLVADLFYEP-LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTST-TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            66655544322223221  111 1111110  1234444444443321                    000  0000122


Q ss_pred             HHHhhcC-CchhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCcc-cceeeccCCCchhhhHHHHHHHh
Q 010080          277 VVYLSAL-SNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSST-ISDVLVPGHGITDQVIAVLVKCL  353 (518)
Q Consensus       277 L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~-~~~~i~~G~~~~~~~l~~L~~lL  353 (518)
                      |.+++.- .++..+.     .++.+...+.. ..+...+..+++++|.|+.+.+.. ...++       ..+++.|+.++
T Consensus       437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-------~~vi~~Ll~l~  504 (1023)
T 4hat_C          437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-------VTVIKDLLDLC  504 (1023)
T ss_dssp             HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-------HHHHHHHHHhh
Confidence            3333321 1111111     23334444422 246778899999999999776542 22233       25888888888


Q ss_pred             cc-----ChhhhHHHHHHHHHHhccC---CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCch
Q 010080          354 KS-----EHRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPK  425 (518)
Q Consensus       354 ~~-----~~~~i~~~a~~~Lsnl~~~---~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~  425 (518)
                      .+     ++..++..+||++|..+.-   .++....     ++..|+..|....+.++..|||++.++|..+.       
T Consensus       505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~-------  572 (1023)
T 4hat_C          505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCK-------  572 (1023)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT-------
T ss_pred             hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-------
Confidence            64     3445677899999977642   3333222     34456666666778899999999999987421       


Q ss_pred             hHHHHHHHHHh------cCchH----HHHHhhccCCHHHHHHHHHHHHHHHccCCC
Q 010080          426 LIQEHLVSLVG------RGCLS----GFIDLVRSADIEAARLGLQFMELVLRGMPN  471 (518)
Q Consensus       426 ~~~~~~~~l~~------~g~i~----~L~~lL~~~d~~~~~~~l~~l~~il~~~~~  471 (518)
                            ..+..      ...++    .+...+..-+++-...+.+++..++...++
T Consensus       573 ------~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~  622 (1023)
T 4hat_C          573 ------YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS  622 (1023)
T ss_dssp             ------HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred             ------HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence                  22221      01222    333333345667777888888888877654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.96  E-value=0.00078  Score=58.03  Aligned_cols=217  Identities=16%  Similarity=0.176  Sum_probs=152.7

Q ss_pred             HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080          123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  202 (518)
Q Consensus       123 ~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  202 (518)
                      +..++..++.+|+.+- ..+|..|+..+.+++..-++...   ..+..|+.++..++...+....+.++|-++...|+..
T Consensus        30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~e---pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYE---PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHH---HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHH---HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            3456777888887543 45778899999999976665433   3566777777766778888888999999998666654


Q ss_pred             HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      +.     .+|.|..-..-.++.++.+..++|-.+++.. |    +.  ..++..-+..++.++|..=...++..++-+..
T Consensus       106 ~~-----vVp~lfanyrigd~kikIn~~yaLeeIaran-P----~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          106 KS-----MIPVLFANYRIGDEKTKINVSYALEEIAKAN-P----ML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-H----HH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             Hh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhC-h----HH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            32     4566666666679999999999999999763 2    22  34777888899998886555555555555554


Q ss_pred             CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080          283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  362 (518)
Q Consensus       283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~  362 (518)
                      +.   ...+  ...+|+|..+| ...+.-++..+.-+|+++++-++...            .++...+.=+...+.-+++
T Consensus       174 n~---~~yv--~PfLprL~aLL-~D~deiVRaSaVEtL~~lA~~npklR------------kii~~kl~e~~D~S~lv~~  235 (253)
T 2db0_A          174 NS---FKYV--NPFLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLR------------KVVIKRLEELNDTSSLVNK  235 (253)
T ss_dssp             TT---HHHH--GGGHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCHHHH------------HHHHHHHHHCCCSCHHHHH
T ss_pred             cC---cccc--CcchHHHHHHH-cCcchhhhHHHHHHHHHHHHcCHHHH------------HHHHHHHHHhcCcHHHHHH
Confidence            33   3333  36689999988 57787888999999999998775421            1333334445566666666


Q ss_pred             HHHHHHHHhcc
Q 010080          363 EAAWVLSNIAA  373 (518)
Q Consensus       363 ~a~~~Lsnl~~  373 (518)
                      ..--.|+-|+.
T Consensus       236 ~V~egL~rl~l  246 (253)
T 2db0_A          236 TVKEGISRLLL  246 (253)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666766653

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.87  E-value=0.0039  Score=70.80  Aligned_cols=341  Identities=13%  Similarity=0.151  Sum_probs=175.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHH-HHhcCCCChHHHHHHHHHHHHHhcCC--hH---HHHHhcCC
Q 010080           94 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV-QCLAFGSPDEQLLEAAWCLTNIAAGK--QE---ETKALLPA  167 (518)
Q Consensus        94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv-~~L~~~~~~~~~~eA~~~L~nia~~~--~~---~~~~v~~~  167 (518)
                      ++.+.+..++.++..+++.-   +...+++..+++.+. .++.   .+..+..|+.||..+.+..  +.   ....+...
T Consensus       207 ~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            45677888999998877743   234566778888888 4443   3556566999999998642  11   11111111


Q ss_pred             hHHHHHhh-----------------cCCCCHHHHHHHHHHHHhhhC-------CChhhHHHHHhcCChhHHHhhhCCCCh
Q 010080          168 LPLLIAHL-----------------GEKSSSPVAEQCAWALGNVAG-------EGEEFRNVLLSQGALPPLARMMLPNKG  223 (518)
Q Consensus       168 v~~Lv~lL-----------------~~~~~~~v~~~a~~~L~nla~-------d~~~~r~~~~~~g~i~~L~~ll~~~~~  223 (518)
                      ++.++..+                 .+..+.+.....+..+..+..       ..+..+..+  ..+++.++.+...++.
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~  358 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEER  358 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCH
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcH
Confidence            12222211                 111233444444444433321       111222222  2346666666666777


Q ss_pred             hHHHHHHHHHHHhhc----CCCCCc-hhhHHHhhchHHHHHHHhccCC-------------------h---hHHHHHHHH
Q 010080          224 STVRTAAWALSNLIK----GPDPKP-ATELIKVDGLLDAILRHLKRAD-------------------E---ELTTEVAWV  276 (518)
Q Consensus       224 ~~~~~a~~~L~nL~~----~~~~~~-~~~~i~~~~~l~~L~~lL~~~d-------------------~---~v~~~a~~~  276 (518)
                      .+...+.-....+++    .+.... ...+  ...+++.++..+..++                   .   .....+.-+
T Consensus       359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~--l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~  436 (1049)
T 3m1i_C          359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEI--CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCGGGGHHH--HHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHH--HHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHH
Confidence            777777766666665    211111 1111  1244555555443211                   0   112233445


Q ss_pred             HHHhhcCCchhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCcc-cceeeccCCCchhhhHHHHHHHhc
Q 010080          277 VVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSST-ISDVLVPGHGITDQVIAVLVKCLK  354 (518)
Q Consensus       277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~-~~~~i~~G~~~~~~~l~~L~~lL~  354 (518)
                      |.+++.-....   ++ .-+.+.+-..+.. +.+...+..+++++|.++.+-... ...++       ..+++.|..+..
T Consensus       437 L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-------~~v~~~l~~l~~  505 (1049)
T 3m1i_C          437 LVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-------VTVIKDLLDLTV  505 (1049)
T ss_dssp             HHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-------HHHHHHHHHHTT
T ss_pred             HHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-------HHHHHHHHHHHh
Confidence            55555311111   10 1122333344421 345567889999999987543221 11111       134555555433


Q ss_pred             c-----ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHH
Q 010080          355 S-----EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE  429 (518)
Q Consensus       355 ~-----~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~  429 (518)
                      .     +++.++..+||+++..+.--..+-+.+.  .+++.|+..|.+.++.|+..|++++.++|....           
T Consensus       506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~-----------  572 (1049)
T 3m1i_C          506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK-----------  572 (1049)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT-----------
T ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-----------
Confidence            2     3455666799999977642111111121  256678888888889999999999999986421           


Q ss_pred             HHHHHH--h--------cCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080          430 HLVSLV--G--------RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       430 ~~~~l~--~--------~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~  470 (518)
                        ..+.  .        ..++..|..++..-+.+-.....+++..++...+
T Consensus       573 --~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          573 --YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             --HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             --HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence              1111  0        1123334444444555555666777777776544

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.84  E-value=0.0024  Score=71.91  Aligned_cols=298  Identities=8%  Similarity=0.015  Sum_probs=165.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHh-------cCCCC--hHHHHHHHHHHHHHhcCChHH-----
Q 010080           95 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL-------AFGSP--DEQLLEAAWCLTNIAAGKQEE-----  160 (518)
Q Consensus        95 ~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L-------~~~~~--~~~~~eA~~~L~nia~~~~~~-----  160 (518)
                      +++.+..|+.+|..+++..........+ ..++|.++.+.       ..++.  +......+..+..++......     
T Consensus       257 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  335 (971)
T 2x1g_F          257 ENELAESCLKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGI  335 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566778889999988764311111122 22345444432       22221  233344556666555322221     


Q ss_pred             -------HHHhcCChHHHHHhhcC----CCCHHHHHHHHHHHHhhhCC---------ChhhHHHHHh--cCChhHHHhhh
Q 010080          161 -------TKALLPALPLLIAHLGE----KSSSPVAEQCAWALGNVAGE---------GEEFRNVLLS--QGALPPLARMM  218 (518)
Q Consensus       161 -------~~~v~~~v~~Lv~lL~~----~~~~~v~~~a~~~L~nla~d---------~~~~r~~~~~--~g~i~~L~~ll  218 (518)
                             ...+...++.++.+...    ..+.++...+++.+..++.+         .+..+..+..  ...++.++..+
T Consensus       336 ~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~  415 (971)
T 2x1g_F          336 TSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKS  415 (971)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence                   12222466666766533    24678999999998887641         1111111111  13344444444


Q ss_pred             CCC-C--------------hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-----CChhHHHHHHHHHH
Q 010080          219 LPN-K--------------GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-----ADEELTTEVAWVVV  278 (518)
Q Consensus       219 ~~~-~--------------~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~-----~d~~v~~~a~~~L~  278 (518)
                      .-+ +              ...++.+.-+|..++... +..   ++  ..+++.+...+.+     .+-..+..++++++
T Consensus       416 ~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~-~~~---~l--~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          416 EQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVL-NDY---IL--EILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             SCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTC-TTH---HH--HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             cCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHH-hHH---HH--HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            321 1              134556666777777532 211   11  2344444444443     34467889999999


Q ss_pred             HhhcCCchhhhHHHhcCchHHHHHHHc--c--CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc
Q 010080          279 YLSALSNVATSLLVKSGVLQLLVERLA--T--SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK  354 (518)
Q Consensus       279 ~L~~~~~~~~~~~~~~g~~~~Lv~lL~--~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~  354 (518)
                      .++.+......     ..++.++.++.  .  ..++.++..+++++|.++..-....+ .+       ..+++.|+..| 
T Consensus       490 ~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-------~~vl~~l~~~l-  555 (971)
T 2x1g_F          490 SVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-------PPAINLLVRGL-  555 (971)
T ss_dssp             HTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-------HHHHHHHHHHH-
T ss_pred             HHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-------HHHHHHHHHHh-
Confidence            99986543321     23344444332  1  23667888999999998853222112 22       25788888888 


Q ss_pred             cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CChhHHHHHHHHHHHhcCC
Q 010080          355 SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       355 ~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~eA~~aL~nl~~~  416 (518)
                      +  +.++..||+++.+++..........++ .++..|.+++..  -+.+.+..+..+++.++..
T Consensus       556 ~--~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          556 N--SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             H--SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             C--hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            2  789999999999999766555444443 367777788876  3567888888888888763

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.82  E-value=0.00091  Score=75.18  Aligned_cols=145  Identities=9%  Similarity=0.097  Sum_probs=88.9

Q ss_pred             hcCCCChHHHHH-HHHHHHHHhcCChHH-HHHhc-CChHHHHHhhcC----CCCHHHHHHHHHHHHhhhCCChhhHHHHH
Q 010080          134 LAFGSPDEQLLE-AAWCLTNIAAGKQEE-TKALL-PALPLLIAHLGE----KSSSPVAEQCAWALGNVAGEGEEFRNVLL  206 (518)
Q Consensus       134 L~~~~~~~~~~e-A~~~L~nia~~~~~~-~~~v~-~~v~~Lv~lL~~----~~~~~v~~~a~~~L~nla~d~~~~r~~~~  206 (518)
                      +...+.+...+| ++|+++.|+.+-.+. -...+ .++|.|+.++..    .+...++..++|++|.++.--....+.  
T Consensus       460 l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~--  537 (1023)
T 4hat_C          460 IDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--  537 (1023)
T ss_dssp             HSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH--
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH--
Confidence            333334556677 799999999775433 33444 689999998852    123556778889999987521111111  


Q ss_pred             hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHH---------HhhchHHHHHHHhccCChhHHHHHHHHH
Q 010080          207 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI---------KVDGLLDAILRHLKRADEELTTEVAWVV  277 (518)
Q Consensus       207 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i---------~~~~~l~~L~~lL~~~d~~v~~~a~~~L  277 (518)
                      =...++.|+..+..+++.++.+|+|+|.+||....    ..++         ....++..+...+..-+++-...+.-++
T Consensus       538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~----~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai  613 (1023)
T 4hat_C          538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK----YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC  613 (1023)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT----HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH----HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            11234445555556678999999999999997421    1111         0123333344444445666677888888


Q ss_pred             HHhhcCC
Q 010080          278 VYLSALS  284 (518)
Q Consensus       278 ~~L~~~~  284 (518)
                      +.+....
T Consensus       614 ~~vi~~~  620 (1023)
T 4hat_C          614 GIIISEE  620 (1023)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHhC
Confidence            8888753

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.74  E-value=0.00086  Score=75.45  Aligned_cols=339  Identities=12%  Similarity=0.088  Sum_probs=179.7

Q ss_pred             HHHH-HHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC
Q 010080          142 QLLE-AAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML  219 (518)
Q Consensus       142 ~~~e-A~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~  219 (518)
                      ...| |+++++.++.+-.......+ ..++.+..+ .+ +++.|+..++|++|.++..-.... . .-..+++.|+..|.
T Consensus       464 ~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~-~~~~vr~~~~~~l~~~~~~l~~~~-~-~l~~vl~~l~~~l~  539 (963)
T 2x19_B          464 QHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SI-SNVQLADTVMFTIGALSEWLADHP-V-MINSVLPLVLHALG  539 (963)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CC-CSHHHHHHHHHHHHHTHHHHHHCH-H-HHTTTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CC-CcHHHHHHHHHHHHHHHHHHHhCH-H-HHHHHHHHHHHHhC
Confidence            4455 89999999976432111111 233322222 22 478899999999999885211111 1 22367888888775


Q ss_pred             CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC--ChhHHHHHHHHHHHhhcCCc-hhhhHHHhcCc
Q 010080          220 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSN-VATSLLVKSGV  296 (518)
Q Consensus       220 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~-~~~~~~~~~g~  296 (518)
                      +  +.++..|+++|.++|+...... ...  ..++++.|..++...  +.+.+..++-+++.++...+ +.....+ ..+
T Consensus       540 ~--~~V~~~A~~al~~l~~~~~~~l-~p~--~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~~l  613 (963)
T 2x19_B          540 N--PELSVSSVSTLKKICRECKYDL-PPY--AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-HSL  613 (963)
T ss_dssp             C--GGGHHHHHHHHHHHHHHTGGGC-TTT--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HHH
T ss_pred             C--chHHHHHHHHHHHHHHHHHHHH-Hhh--HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-HHH
Confidence            4  7899999999999996421110 011  134555556666642  46788888888988886432 2322222 234


Q ss_pred             hHHHHHHHc---cC-CCccch---hhhhhhhhhhhcCCCcc-------------------cceeeccCCCchhhhHHHHH
Q 010080          297 LQLLVERLA---TS-NSLQLL---IPVLRSLGNLVAGDSST-------------------ISDVLVPGHGITDQVIAVLV  350 (518)
Q Consensus       297 ~~~Lv~lL~---~~-~~~~v~---~~al~~L~nl~~~~~~~-------------------~~~~i~~G~~~~~~~l~~L~  350 (518)
                      ++.+...+.   .. .+++..   ...+.+|+.+...-...                   ...+..    +...+++.+.
T Consensus       614 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  689 (963)
T 2x19_B          614 ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV----VLQQVFQLIQ  689 (963)
T ss_dssp             HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH----HHHHHHHHHH
Confidence            444444432   11 122222   24555565555331110                   000100    1234566666


Q ss_pred             HHhcc--ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh----cC-CChhHHHHHHHHHHHhcC--CCCCCC
Q 010080          351 KCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL----ST-SPFDIKKEVAYVLGNLCV--SPTEGE  421 (518)
Q Consensus       351 ~lL~~--~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL----~~-~~~~v~~eA~~aL~nl~~--~~~~~~  421 (518)
                      .++..  .+..+.+.+|.+++.++..-.+...     ..+|.++..+    .. ...    ..++.++.++.  +..  .
T Consensus       690 ~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~--~  758 (963)
T 2x19_B          690 KVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE--P  758 (963)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC--T
T ss_pred             HHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC--c
Confidence            66643  3567889999999987642111111     1344444433    22 222    34455555544  211  0


Q ss_pred             CCchhHHHHHHHHHhcCchHHHHHhhc---cCCHHHHHHHHHHHHHHHccCCCCcc-hhH-HHhhchHHHHHHHhcCCCH
Q 010080          422 GKPKLIQEHLVSLVGRGCLSGFIDLVR---SADIEAARLGLQFMELVLRGMPNHEG-TKL-VEREDGIDAMERFQFHENE  496 (518)
Q Consensus       422 ~~~~~~~~~~~~l~~~g~i~~L~~lL~---~~d~~~~~~~l~~l~~il~~~~~~~~-~~~-ie~~ggl~~l~~L~~~~~~  496 (518)
                      ...    ..+..++ ..++..++.++.   ..++++.......+..+++.++.... ... ++  ..++.+.....+++.
T Consensus       759 ~~~----~~~~~~l-~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~--~i~~~~~~~l~~~~~  831 (963)
T 2x19_B          759 AHF----PPIEALF-LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVK--AVFQCAVLALKFPEA  831 (963)
T ss_dssp             TTC----HHHHHHH-HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHH--HHHHHHHHHTTCSCH
T ss_pred             chH----HHHHHHH-HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH--HHHHHHHHHcCCCCH
Confidence            011    1122211 112334444443   24699999999999999987653211 000 11  122333344568999


Q ss_pred             HHHHHHHHHHHhhcCc
Q 010080          497 DLRNMANGLVDKYFGE  512 (518)
Q Consensus       497 ~i~~~a~~il~~~f~~  512 (518)
                      ++.+.|..++..++..
T Consensus       832 ~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          832 PTVKASCGFFTELLPR  847 (963)
T ss_dssp             HHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999888876643

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.72  E-value=0.00044  Score=77.81  Aligned_cols=252  Identities=10%  Similarity=0.063  Sum_probs=147.3

Q ss_pred             HHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcC-----CCCHHHHHHHHHHHHhhhCCChhhHHHHHhc-----CChhH
Q 010080          145 EAAWCLTNIAAGKQEETKALL-PALPLLIAHLGE-----KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-----GALPP  213 (518)
Q Consensus       145 eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~-----~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-----g~i~~  213 (518)
                      .|..+|..++....   +.++ ..++.+...+..     +++...++.|+.++|.++......... ...     ...+.
T Consensus       380 aa~~~L~~l~~~~~---~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~~l~~~  455 (960)
T 1wa5_C          380 ACTDFLKELKEKNE---VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLLNVVDF  455 (960)
T ss_dssp             HHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTCCHHHH
T ss_pred             HHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-cccccccccHHHH
Confidence            46666666664433   2222 133344344431     256789999999999998532111000 000     11111


Q ss_pred             ----HHhhhCCC---ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc-
Q 010080          214 ----LARMMLPN---KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-  285 (518)
Q Consensus       214 ----L~~ll~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-  285 (518)
                          ++..+.++   ++-++..++|+++.++..-.    .+.  ...+++.+++.|.+++..|+..||++|.+++...+ 
T Consensus       456 l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~----~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~  529 (960)
T 1wa5_C          456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRES  529 (960)
T ss_dssp             HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred             HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC----HHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence                22233444   78899999999999997531    223  35788999999988888999999999999986321 


Q ss_pred             ------hh-hhHHH--hcCchHHHHHHHccCC----CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHH
Q 010080          286 ------VA-TSLLV--KSGVLQLLVERLATSN----SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC  352 (518)
Q Consensus       286 ------~~-~~~~~--~~g~~~~Lv~lL~~~~----~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~l  352 (518)
                            +. ...+.  -..+++.|..++....    .......++.+|+.++....+.....+       ..+++.|...
T Consensus       530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-------~~l~~~L~~~  602 (960)
T 1wa5_C          530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-------PQLLAQFIEI  602 (960)
T ss_dssp             SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-------HHHHHHHHHH
T ss_pred             cccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHH
Confidence                  11 11111  1245566666664321    111345677778777644333332232       2366666665


Q ss_pred             hcc-----ChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          353 LKS-----EHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       353 L~~-----~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                      +..     .++..+..++-+|+.++.. .++....+. ..++|.+..+|.....+....+...+..+.
T Consensus       603 l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence            532     3456677788888888765 444444443 347899999997766666666666666554

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.62  E-value=0.02  Score=54.30  Aligned_cols=135  Identities=14%  Similarity=0.199  Sum_probs=100.4

Q ss_pred             HHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-
Q 010080          185 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-  263 (518)
Q Consensus       185 ~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-  263 (518)
                      ..+...|+-+.. .....+-++...++..+...++-++.++.+..+..|...+..+.  .+.  ......+|.+++.+. 
T Consensus       261 tR~FDLL~LLmH-dSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks--L~~--t~L~e~LPFi~~~i~~  335 (619)
T 3c2g_A          261 IRTFDLLGLLLH-DSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA--LAK--TPLENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHHHCC-SHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG--GGT--SCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-ccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH--Hhh--ccccccchHHHHHhcc
Confidence            334444444444 55777888899999999999999999999999999998875531  121  123578999998887 


Q ss_pred             cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCc-------------cchhhhhhhhhhhh
Q 010080          264 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL-------------QLLIPVLRSLGNLV  324 (518)
Q Consensus       264 ~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~-------------~v~~~al~~L~nl~  324 (518)
                      ++++++.-.....|+|.........+..+..|+++.|...+..++-.             .+...++|++.|+.
T Consensus       336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL  409 (619)
T 3c2g_A          336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL  409 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence            78889999999999999987766677778899999998887644321             12345666777665

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.62  E-value=0.0035  Score=69.15  Aligned_cols=265  Identities=12%  Similarity=0.164  Sum_probs=176.8

Q ss_pred             CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080          209 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT  288 (518)
Q Consensus       209 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~  288 (518)
                      +++..|...+.+.+..  +.|+-++..||+.....+..+... -+.+|.++....+.+..|+..|-.++..+...-+...
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a  130 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA  130 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence            5667777777765444  999999999996543333334322 3688888888888888888888877777775322221


Q ss_pred             hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHH
Q 010080          289 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL  368 (518)
Q Consensus       289 ~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~L  368 (518)
                        +  ..++|.|+..|......+....|+.+++.++...+.+...-+       ..++|.+...+.+.++.+++.|.-++
T Consensus       131 --~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~d~k~~v~~~~~~~~  199 (986)
T 2iw3_A          131 --I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-------PELIPVLSETMWDTKKEVKAAATAAM  199 (986)
T ss_dssp             --H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-------HHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             --H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-------cchhcchHhhcccCcHHHHHHHHHHH
Confidence              1  456899999996555788899999999999976555544333       36899999999999999999999999


Q ss_pred             HHhccC--CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHh
Q 010080          369 SNIAAG--SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL  446 (518)
Q Consensus       369 snl~~~--~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~l  446 (518)
                      -.+|..  +.+ +     ...+|.|+..+.+++.  --++...|+.-+.-.+ . ..|      .-.+    .+|.|..-
T Consensus       200 ~~~~~~~~n~d-~-----~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~-v-~~~------~l~~----~~p~l~r~  259 (986)
T 2iw3_A          200 TKATETVDNKD-I-----ERFIPSLIQCIADPTE--VPETVHLLGATTFVAE-V-TPA------TLSI----MVPLLSRG  259 (986)
T ss_dssp             HHHGGGCCCTT-T-----GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC-C-CHH------HHHH----HHHHHHHH
T ss_pred             HHHHhcCCCcc-h-----hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee-e-cch------hHHH----HHHHHHhh
Confidence            888762  321 1     2468999999998853  2344444443332211 0 001      0111    35666667


Q ss_pred             hccCCHHHHHHHHHHHHHHHccCCCCcc-hhHHHhhchHHHHHH-HhcCCCHHHHHHHHHHHHhh
Q 010080          447 VRSADIEAARLGLQFMELVLRGMPNHEG-TKLVEREDGIDAMER-FQFHENEDLRNMANGLVDKY  509 (518)
Q Consensus       447 L~~~d~~~~~~~l~~l~~il~~~~~~~~-~~~ie~~ggl~~l~~-L~~~~~~~i~~~a~~il~~~  509 (518)
                      |....+.+.+++.-.+.|+++-..+... ..++.  .-++.++. .....+||+++.|.+-+++.
T Consensus       260 l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          260 LNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--KLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--TTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             hccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--hhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            7778899999999999999987655211 11221  22333433 25668999888776666655

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.58  E-value=0.0043  Score=69.56  Aligned_cols=309  Identities=17%  Similarity=0.129  Sum_probs=165.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC--hHHHHHhcCCh--
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK--QEETKALLPAL--  168 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~--~~~~~~v~~~v--  168 (518)
                      +.++.....++.++..+++.   .++..++..+.++.+..+|..   +..+..|+.||+.|.+..  ++....++..+  
T Consensus       204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            46778888999999998884   456778888999999999974   456566999999998544  33333333211  


Q ss_pred             HHHHHhhcC-CCCHHHHHHHHHHHHhhh-------CCC----hhhHHHH--HhcCChhHHHhhhCCCChhHHHHHHHHHH
Q 010080          169 PLLIAHLGE-KSSSPVAEQCAWALGNVA-------GEG----EEFRNVL--LSQGALPPLARMMLPNKGSTVRTAAWALS  234 (518)
Q Consensus       169 ~~Lv~lL~~-~~~~~v~~~a~~~L~nla-------~d~----~~~r~~~--~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  234 (518)
                      ...+.-+.. ..+.++.+..+..+..++       .+.    ++.+...  .-.+.++.++.++.+++.++...+.-.+.
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~  357 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS  357 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            112222221 356666554444333221       111    1111111  11357888889988887777665555544


Q ss_pred             HhhcC----CCCCchhhHHH--hhchHHHHHHHhccCC----------h------hHHHHHHHHHHHhhc--CCchhhhH
Q 010080          235 NLIKG----PDPKPATELIK--VDGLLDAILRHLKRAD----------E------ELTTEVAWVVVYLSA--LSNVATSL  290 (518)
Q Consensus       235 nL~~~----~~~~~~~~~i~--~~~~l~~L~~lL~~~d----------~------~v~~~a~~~L~~L~~--~~~~~~~~  290 (518)
                      .+...    .......+...  ...+++.+++-+..++          +      +.+.+.. .+...+.  +.+.....
T Consensus       358 ~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          358 DLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHH
Confidence            44421    10000111100  1234444444443211          1      2333333 3332221  11111111


Q ss_pred             HHhcCchHHH-HHHHc--cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-----cChhhhHH
Q 010080          291 LVKSGVLQLL-VERLA--TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-----SEHRVLKK  362 (518)
Q Consensus       291 ~~~~g~~~~L-v~lL~--~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-----~~~~~i~~  362 (518)
                      +.+  .+..+ ...+.  .+.+...++.++.+|+.++.+-......+ .........+++.+..++.     ++++.|+.
T Consensus       437 ~~~--~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~  513 (980)
T 3ibv_A          437 MYS--AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSPTVLSQILALVTTSQVCRHPHPLVQL  513 (980)
T ss_dssp             HHH--HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHH
T ss_pred             HHH--HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-CcccchhHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence            110  12222 22221  12345667889999999887643211111 0000011247777777776     67889999


Q ss_pred             HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh------cCCChhHHHHHHHHHHHhcCCC
Q 010080          363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL------STSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL------~~~~~~v~~eA~~aL~nl~~~~  417 (518)
                      .+||+++..+.--..      ....+|++++.+      .+++.+|+..|++++.++|...
T Consensus       514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~  568 (980)
T 3ibv_A          514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI  568 (980)
T ss_dssp             HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence            999999988753211      124555655555      3466789999999999998753

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.52  E-value=0.0007  Score=64.64  Aligned_cols=189  Identities=15%  Similarity=0.091  Sum_probs=130.9

Q ss_pred             HHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeecc
Q 010080          258 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP  337 (518)
Q Consensus       258 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~  337 (518)
                      ++.-|.+.+.+.+..++.-|..+...+.+....++..+++..|+... ...+.+++..+|++++++....+- ...++. 
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~LM~~v~G-m~gvvs-  199 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQLMLFVDG-MLGVVA-  199 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHHTTSHHH-HHHHHH-
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHHHhcccc-ccchhC-
Confidence            34555567778899999999985545778899999999999999988 467888999999999999765321 112222 


Q ss_pred             CCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHh----------CCCHHHHHHHhc---CCChhHHH
Q 010080          338 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHS----------SEALALLLHLLS---TSPFDIKK  404 (518)
Q Consensus       338 G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~----------~~~i~~Li~lL~---~~~~~v~~  404 (518)
                          ...++..+..++.+....|.+.|..+|-+++..++.....+..          ...++.|+.+|+   ++|.+++.
T Consensus       200 ----~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~  275 (339)
T 3dad_A          200 ----HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV  275 (339)
T ss_dssp             ----CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred             ----CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence                1357888999999888899999999999998765433333322          124789999997   78889998


Q ss_pred             HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC--CHHHHHH
Q 010080          405 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--DIEAARL  457 (518)
Q Consensus       405 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--d~~~~~~  457 (518)
                      .|...|..+..+..   + .....+....+-+.|.=..+...+...  |++++.+
T Consensus       276 ~amtLIN~lL~~ap---d-~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          276 YTVTLINKTLAALP---D-QDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHHHCS---S-HHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHHHhcCC---C-hhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            88777666554321   1 100123444555666656666666654  5555543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.50  E-value=0.0028  Score=60.54  Aligned_cols=153  Identities=13%  Similarity=0.160  Sum_probs=117.3

Q ss_pred             HHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhH
Q 010080          348 VLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI  427 (518)
Q Consensus       348 ~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~  427 (518)
                      .++.-|.+++...++.+.+-|..+.......+..+++.+++..|+.+...++..++.-++.|+.++..+.          
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v----------  191 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV----------  191 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH----------
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc----------
Confidence            3445555666677889999999976666789999999999999999999999999999999999997641          


Q ss_pred             HHHHHHHH-hcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhc------h---HHHHHHHhc---CC
Q 010080          428 QEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVERED------G---IDAMERFQF---HE  494 (518)
Q Consensus       428 ~~~~~~l~-~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~g------g---l~~l~~L~~---~~  494 (518)
                       .-..-++ ....|.-+..++.+.++.+++.+|+.|..+..+.+.+ +.....+..      |   ++.|..+..   ..
T Consensus       192 -~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~-~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~  269 (339)
T 3dad_A          192 -DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENN-APLFIRAVNSVASTTGAPPWANLVSILEEKNGA  269 (339)
T ss_dssp             -HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred             -ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCccc-chHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence             1223344 4568899999999999999999999999998876432 222222222      2   666666554   78


Q ss_pred             CHHHHHHHHHHHHhhcCc
Q 010080          495 NEDLRNMANGLVDKYFGE  512 (518)
Q Consensus       495 ~~~i~~~a~~il~~~f~~  512 (518)
                      +.+++..|..+|...|..
T Consensus       270 D~elq~~amtLIN~lL~~  287 (339)
T 3dad_A          270 DPELLVYTVTLINKTLAA  287 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999887754

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.36  E-value=0.03  Score=62.77  Aligned_cols=337  Identities=12%  Similarity=0.112  Sum_probs=179.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhc-C-CCChHHHHHHHHHHHHHhcCChHHHHHhcCChH
Q 010080           92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA-F-GSPDEQLLEAAWCLTNIAAGKQEETKALLPALP  169 (518)
Q Consensus        92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~-~-~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~  169 (518)
                      .+.+...+-.++..+..+...-... .     ...++.++..|. - .+.+.++..++|+++.++.--..+.+.+-..++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~-~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN-Y-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS-C-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch-h-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            3445556666667776644332211 0     223444444442 1 134556567999999998532223333446899


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHH----hhhCCC--ChhHHHHHHHHHHHhhcCCCCC
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA----RMMLPN--KGSTVRTAAWALSNLIKGPDPK  243 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~----~ll~~~--~~~~~~~a~~~L~nL~~~~~~~  243 (518)
                      .++..|.+   +.|+..|+++|.+++.+.   +..+.  ..++.++    .++...  +...+..+.-+++.++....+.
T Consensus       533 ~l~~~l~~---~~V~~~A~~al~~l~~~~---~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~  604 (963)
T 2x19_B          533 LVLHALGN---PELSVSSVSTLKKICREC---KYDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE  604 (963)
T ss_dssp             HHHHHTTC---GGGHHHHHHHHHHHHHHT---GGGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHhCC---chHHHHHHHHHHHHHHHH---HHHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence            99999853   789999999999999643   22222  2344443    444432  4677888888888888542111


Q ss_pred             chhhHHHhhchHHHHHHHhc----cC-ChhHHH---HHHHHHHHhhcC----Cc------------------hhhhHHHh
Q 010080          244 PATELIKVDGLLDAILRHLK----RA-DEELTT---EVAWVVVYLSAL----SN------------------VATSLLVK  293 (518)
Q Consensus       244 ~~~~~i~~~~~l~~L~~lL~----~~-d~~v~~---~a~~~L~~L~~~----~~------------------~~~~~~~~  293 (518)
                      .....  ...+++.+...+.    .. +++...   ..+-+|+.+...    .+                  ..... +.
T Consensus       605 ~~~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  681 (963)
T 2x19_B          605 EILKN--LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VL  681 (963)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HH
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HH
Confidence            11111  1244444444332    22 333322   344444444321    00                  00111 12


Q ss_pred             cCchHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhh-hHHHHHHHHHHh
Q 010080          294 SGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNI  371 (518)
Q Consensus       294 ~g~~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~-i~~~a~~~Lsnl  371 (518)
                      ..+.+.+..++.. ..+..+...++++++.++..-.....           ..+|.++..+...-.. -....+++++.+
T Consensus       682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----------~~l~~~~~~l~~~~~~~~~~~~l~l~~~l  750 (963)
T 2x19_B          682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----------PMVPQLCEMLGRMYSTIPQASALDLTRQL  750 (963)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----------GGHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----------ccHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence            2344444444432 23557888899999988754322221           2444444433111100 012466777777


Q ss_pred             cc--CCH----HHHHHHHhCCCHHHHHHHhc---CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC----
Q 010080          372 AA--GSV----EHKQLIHSSEALALLLHLLS---TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG----  438 (518)
Q Consensus       372 ~~--~~~----~~~~~li~~~~i~~Li~lL~---~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g----  438 (518)
                      +.  +..    ..+..+++. ++..++.++.   ...++++......+..++...      |       ..+....    
T Consensus       751 i~~f~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~------~-------~~~~~~~~~~~  816 (963)
T 2x19_B          751 VHIFAHEPAHFPPIEALFLL-VTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRK------P-------DLFLCERLDVK  816 (963)
T ss_dssp             HHHHTTCTTTCHHHHHHHHH-HHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHC------G-------GGGGCTTSCHH
T ss_pred             HHHhCCCcchHHHHHHHHHH-HHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhC------c-------HHHcCCcccHH
Confidence            65  322    223223222 3444555554   235889999988888876532      1       1111112    


Q ss_pred             -chHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080          439 -CLSGFIDLVRSADIEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       439 -~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~  470 (518)
                       +++.++..|+..++.+...++.++..++....
T Consensus       817 ~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~  849 (963)
T 2x19_B          817 AVFQCAVLALKFPEAPTVKASCGFFTELLPRCG  849 (963)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence             34455666778999999999999999987643

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.01  E-value=0.059  Score=51.37  Aligned_cols=208  Identities=15%  Similarity=0.177  Sum_probs=145.8

Q ss_pred             HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC--CchhhHHH-hhchHHHHHHHhccCChhHHHHHHHHHHH
Q 010080          203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPATELIK-VDGLLDAILRHLKRADEELTTEVAWVVVY  279 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~i~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~  279 (518)
                      ..+...+.+..|+..|..=+-+.++.++-.++++.+....  .+..+.+. ...++..|+..  .+++++...+=-.|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Ye~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKG--YESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHG--GGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHh--hccchhHhHHHHHHHH
Confidence            3445667788888888877888899999999999876321  12222322 11223333322  3445665555555666


Q ss_pred             hhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080          280 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV  359 (518)
Q Consensus       280 L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~  359 (518)
                      +.. .+.....++..+.+..+.+++ ..++-++...|..++.-+.+.....+...+...   -..+...+..+|.+++.-
T Consensus       150 cir-~e~la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n---yd~Ff~~y~~Ll~S~NYV  224 (341)
T 1upk_A          150 CIR-HEPLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH---YDRFFSEYEKLLHSENYV  224 (341)
T ss_dssp             HHT-SHHHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHHHHHHHHHHTTCSSHH
T ss_pred             HHH-hHHHHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh---HHHHHHHHHHHhcCCcch
Confidence            555 455677788888888999988 578888999999999888877654443333221   124677788899999999


Q ss_pred             hHHHHHHHHHHhccC--CHHHHHHHH-hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080          360 LKKEAAWVLSNIAAG--SVEHKQLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       360 i~~~a~~~Lsnl~~~--~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  417 (518)
                      +|+.+...|+.|.-.  +.......+ +..-+..++.+|++.+..+|-||..+.--.+.++
T Consensus       225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            999999999999865  333333333 3356889999999999999999999998888765

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.91  E-value=0.33  Score=54.54  Aligned_cols=336  Identities=12%  Similarity=0.119  Sum_probs=171.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHH-HHHhcCCCChHHHHHHHHHHHHHhcCC-hHHHHHh---c-C
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVL-VQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKAL---L-P  166 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~L-v~~L~~~~~~~~~~eA~~~L~nia~~~-~~~~~~v---~-~  166 (518)
                      +++++....++..++.+++.-   ++..+++.++++.+ ..+|.   .+..+..|+.||+.|.+.. ++....+   + .
T Consensus       218 ~~~~~lv~~~L~~L~~~~sWI---~i~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNWI---PLGYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhc---CHHHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            456777777889999987763   45778899999988 47775   2455556999999998643 2211222   1 1


Q ss_pred             ChHHHHHhhc------------CCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc-C-------ChhHHHhhhCCCChhHH
Q 010080          167 ALPLLIAHLG------------EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-G-------ALPPLARMMLPNKGSTV  226 (518)
Q Consensus       167 ~v~~Lv~lL~------------~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g-------~i~~L~~ll~~~~~~~~  226 (518)
                      .+..+-.++.            ...+.+....-+..+..+..   .....+... +       ++..|+.+-..++.++.
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e---~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~  368 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLK---EHGQLLEKRLNLREALMEALHYMLLVSEVEETEIF  368 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHH---HHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHH---HHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHH
Confidence            2222212221            11223444444444444432   222222222 1       12223334445677777


Q ss_pred             HHHHHH----HHHhhcCCC----CC-----------chhhHHHhhchHHHHHHHh----ccCCh----------------
Q 010080          227 RTAAWA----LSNLIKGPD----PK-----------PATELIKVDGLLDAILRHL----KRADE----------------  267 (518)
Q Consensus       227 ~~a~~~----L~nL~~~~~----~~-----------~~~~~i~~~~~l~~L~~lL----~~~d~----------------  267 (518)
                      +.+.-.    ...|.+...    ..           +.+..+ -.+++..|..++    ..+++                
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~-y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~  447 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQL-YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM  447 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHT-THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHH-HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence            665422    223332110    00           011110 013333333322    21110                


Q ss_pred             ---------hHHHHHHHHHHHhhcC-CchhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCc-ccceee
Q 010080          268 ---------ELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSS-TISDVL  335 (518)
Q Consensus       268 ---------~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~-~~~~~i  335 (518)
                               .+..+++   .+++.- ..+..+.     ..+.+.+.+.. ..+...+..+|+++|.|+..-.. ....++
T Consensus       448 ~d~~~~~ly~~mrd~L---~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L  519 (1073)
T 3gjx_A          448 KDTDSINLYKNMRETL---VYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL  519 (1073)
T ss_dssp             SSCHHHHHHHHHHHHH---HHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHH---HHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH
Confidence                     1222333   444421 1112221     23444444422 23466788999999999743322 111222


Q ss_pred             ccCCCchhhhHHHHHHHhccC-----hhhhHHHHHHHHHHhccC---CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHH
Q 010080          336 VPGHGITDQVIAVLVKCLKSE-----HRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  407 (518)
Q Consensus       336 ~~G~~~~~~~l~~L~~lL~~~-----~~~i~~~a~~~Lsnl~~~---~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~  407 (518)
                             ..+++.|+.+..+.     +..++...||++|..+.-   .++....     ++..|++.+...++.|+..|+
T Consensus       520 -------p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~  587 (1073)
T 3gjx_A          520 -------VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMAC  587 (1073)
T ss_dssp             -------HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHH
T ss_pred             -------HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHH
Confidence                   24677777776554     335667788999876542   3343333     345677778888889999999


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHh--cC----chHHHHHhh----ccCCHHHHHHHHHHHHHHHccCCC
Q 010080          408 YVLGNLCVSPTEGEGKPKLIQEHLVSLVG--RG----CLSGFIDLV----RSADIEAARLGLQFMELVLRGMPN  471 (518)
Q Consensus       408 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~--~g----~i~~L~~lL----~~~d~~~~~~~l~~l~~il~~~~~  471 (518)
                      -|+..+|..+.             +.++.  .|    .+..++..+    ..-+++-+....+++..++...++
T Consensus       588 ~af~~i~~~C~-------------~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~  648 (1073)
T 3gjx_A          588 DTFIKIAQKCR-------------RHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTD  648 (1073)
T ss_dssp             HHHHHHHHHTG-------------GGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHH-------------HHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Confidence            99999987532             11111  01    222233222    223566667777888888877654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.89  E-value=0.011  Score=59.84  Aligned_cols=251  Identities=12%  Similarity=0.093  Sum_probs=158.9

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC
Q 010080           87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP  166 (518)
Q Consensus        87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~  166 (518)
                      ++..+-++.=+.+.-|...||.++......       +|..       ...+ .   --|+++++-++-+.         
T Consensus       179 L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLALDR---------  231 (800)
T 3oc3_A          179 ISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILVTDK---------  231 (800)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBC---------
T ss_pred             HHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHHhcc---------
Confidence            334566888899999999999998865421       1221       1111 1   12556666666321         


Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                          |-.+.+..--..|||.|+.+||.+ ..-+.-      ..++..|+..+..+..+++-.++-.|.++..-     ..
T Consensus       232 ----FGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DL-----L~  295 (800)
T 3oc3_A          232 ----FNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEF-----VE  295 (800)
T ss_dssp             ----CBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGG-----CC
T ss_pred             ----ccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHH-----HH
Confidence                112222223468999999999998 533321      34455555555667789999999999998211     01


Q ss_pred             hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccch-hhhhhhhhhhhc
Q 010080          247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL-IPVLRSLGNLVA  325 (518)
Q Consensus       247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~-~~al~~L~nl~~  325 (518)
                      +   -.+++|.++..|.+.|++|+..|+.+|.-++  .++...     .++..+.+.|.+..+.... ..++..|+.+++
T Consensus       296 ~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s  365 (800)
T 3oc3_A          296 D---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYR  365 (800)
T ss_dssp             C---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence            1   2578899999999999999999999999998  333333     3355666666543333222 355667777776


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHH-HHhcCCChhHHH
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL-HLLSTSPFDIKK  404 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li-~lL~~~~~~v~~  404 (518)
                      .+....   .      ....+|.|..++.|.-++||+.+..++..+.  ...         ++..+. ++|-..+.+++.
T Consensus       366 ~p~~a~---~------dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~  425 (800)
T 3oc3_A          366 ENPELS---I------PPERLKDIFPCFTSPVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIRE  425 (800)
T ss_dssp             HCTTCC---C------CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHH
T ss_pred             CCcccc---c------ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHH
Confidence            663211   1      2368999999999999999999999998776  211         233333 334556667776


Q ss_pred             HHHHHH
Q 010080          405 EVAYVL  410 (518)
Q Consensus       405 eA~~aL  410 (518)
                      .+..+-
T Consensus       426 lS~~VW  431 (800)
T 3oc3_A          426 MAIKLL  431 (800)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=96.88  E-value=0.086  Score=59.74  Aligned_cols=101  Identities=11%  Similarity=0.141  Sum_probs=64.0

Q ss_pred             ChhhhHHHHHHHHHHhccCCHHHH-HHHHhCCCHHHHHHHhcC-----CChhHHHHHHHHHHHhcCCCCCCCCCchhHHH
Q 010080          356 EHRVLKKEAAWVLSNIAAGSVEHK-QLIHSSEALALLLHLLST-----SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE  429 (518)
Q Consensus       356 ~~~~i~~~a~~~Lsnl~~~~~~~~-~~li~~~~i~~Li~lL~~-----~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~  429 (518)
                      .++..+..|+|+++.++.+..+.. ..++. .+++.|..+...     +.+.++..++|+++.++...          ..
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~----------~~  533 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFL----------KA  533 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHH----------HH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH----------Hh
Confidence            456788999999999986533221 12111 145555554332     23445657999999876431          01


Q ss_pred             HHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          430 HLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       430 ~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      +-+++.  .+++.|+..|.++++.+...|..++.++++.+
T Consensus       534 ~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~  571 (1049)
T 3m1i_C          534 HWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKC  571 (1049)
T ss_dssp             CHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            111221  35677888888888999999999999998754

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.026  Score=53.30  Aligned_cols=187  Identities=14%  Similarity=0.145  Sum_probs=121.4

Q ss_pred             HHHHHccCCCccchhhhhhhhhhhhcCCCccc--ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC--
Q 010080          300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTI--SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS--  375 (518)
Q Consensus       300 Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~--~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~--  375 (518)
                      +-+.| .|.+...+..++..+..+........  ...+..    -....+.+...+.+.+..+...++-++..++...  
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~----~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQI----YWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CC----TTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHH----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence            44566 58888999999988888775432211  111100    0135667788888889999999999999887531  


Q ss_pred             ----HHHHHHHHhCCCHHHHHHH-hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC
Q 010080          376 ----VEHKQLIHSSEALALLLHL-LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA  450 (518)
Q Consensus       376 ----~~~~~~li~~~~i~~Li~l-L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~  450 (518)
                          .......+ ..++|.|+.- |.+....++..|..++..++....    .+    .   .     ++..+...+..+
T Consensus        89 ~~~~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----~~----~---~-----~~e~l~~~l~~K  151 (278)
T 4ffb_C           89 SSLKNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----SI----T---Q-----SVELVIPFFEKK  151 (278)
T ss_dssp             --CCHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----SS----H---H-----HHHHHGGGGGCS
T ss_pred             hhcccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----cH----H---H-----HHHHHHHHHhcc
Confidence                11122222 2367888764 788888899888888877764321    11    1   1     345677788999


Q ss_pred             CHHHHHHHHHHHHHHHcc-CCCCcchh-HHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          451 DIEAARLGLQFMELVLRG-MPNHEGTK-LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       451 d~~~~~~~l~~l~~il~~-~~~~~~~~-~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                      .|.++..++..|..++.. +....... .+.  ..+..+-.+..|.|++|++.|..++-.+|
T Consensus       152 npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly  211 (278)
T 4ffb_C          152 LPKLIAAAANCVYELMAAFGLTNVNVQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIY  211 (278)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCcCCchhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            999999999999998864 22211111 111  12344666789999999999998876655

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.73  E-value=0.23  Score=55.64  Aligned_cols=342  Identities=13%  Similarity=0.075  Sum_probs=178.0

Q ss_pred             hHHHHH-HHHHHHHHhcCChHHHHHh------c-CChHHHHHhhc----CCCCHHHHHHHHHHHHhhhCCChhhHHHHHh
Q 010080          140 DEQLLE-AAWCLTNIAAGKQEETKAL------L-PALPLLIAHLG----EKSSSPVAEQCAWALGNVAGEGEEFRNVLLS  207 (518)
Q Consensus       140 ~~~~~e-A~~~L~nia~~~~~~~~~v------~-~~v~~Lv~lL~----~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~  207 (518)
                      +....| |+.+|..++.+-......+      . ..++.+..++.    +.+++.|+..++|+++..+..-..      .
T Consensus       456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~  529 (980)
T 3ibv_A          456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------E  529 (980)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------C
T ss_pred             CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------C
Confidence            344567 7889999987654322211      1 13455555543    136899999999999998864322      2


Q ss_pred             cCChhHHHhhhC------CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-----CCh---------
Q 010080          208 QGALPPLARMML------PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-----ADE---------  267 (518)
Q Consensus       208 ~g~i~~L~~ll~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~-----~d~---------  267 (518)
                      ...+++++..+-      +++..++..|+.++.++|+...+.... .  ...++..+..+|..     .++         
T Consensus       530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~-~--~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~  606 (980)
T 3ibv_A          530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN-Y--TESSLAMLGDLLNISVSPVTDMDAPVPTLNS  606 (980)
T ss_dssp             CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS-S--HHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred             chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh-H--HHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence            345666665443      456789999999999999764322111 1  11233333333431     111         


Q ss_pred             -------hHHHHHHHHHHHhhcC---CchhhhHHHhcCchHHHHHHHc----cCCCc-c---chhhhhhhhhhhhcCCCc
Q 010080          268 -------ELTTEVAWVVVYLSAL---SNVATSLLVKSGVLQLLVERLA----TSNSL-Q---LLIPVLRSLGNLVAGDSS  329 (518)
Q Consensus       268 -------~v~~~a~~~L~~L~~~---~~~~~~~~~~~g~~~~Lv~lL~----~~~~~-~---v~~~al~~L~nl~~~~~~  329 (518)
                             +-+....-+++.|...   +.+.....+ ..+++.++.-+.    ...+. +   -....+.++|.++.+-+.
T Consensus       607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l-~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~  685 (980)
T 3ibv_A          607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYC-DSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA  685 (980)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHH-HHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred             hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence                   1233344555555532   222222222 234444443332    11111 1   122557788888876432


Q ss_pred             ccce---eeccCCCchhhhHHHHHHHhc--cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc-CCChhHH
Q 010080          330 TISD---VLVPGHGITDQVIAVLVKCLK--SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIK  403 (518)
Q Consensus       330 ~~~~---~i~~G~~~~~~~l~~L~~lL~--~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~  403 (518)
                      ....   ++.    .=..+.+.+...|.  ..+..|+..++.++..+...-...+     ...+|.++..|- +-+..--
T Consensus       686 ~~~~~~p~~~----~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~-----~p~lp~~i~~ll~~~~~~e~  756 (980)
T 3ibv_A          686 RGSEEVAWLA----SFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM-----LPKVPQLISILLNSIDMNEL  756 (980)
T ss_dssp             CC-CCCSHHH----HHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH-----TTTHHHHHHHHHHHCCTTTH
T ss_pred             ccCCCCcHHH----HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH-----HHHHHHHHHHHHhcCCHHHH
Confidence            2110   110    01245666666665  4567899999999999987654432     246777777763 3345556


Q ss_pred             HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC---------HHHHHHHHHHHHHHHccCCCCcc
Q 010080          404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD---------IEAARLGLQFMELVLRGMPNHEG  474 (518)
Q Consensus       404 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d---------~~~~~~~l~~l~~il~~~~~~~~  474 (518)
                      ...+|.+..++..-.   ..-   ...+..+.. -++.....+|..++         ..+.+.-+.++..|+...-.   
T Consensus       757 ~~fL~l~~qli~~f~---~~~---~~~l~~ll~-~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~---  826 (980)
T 3ibv_A          757 VDVLSFISQLIHIYK---DNM---MEITNRMLP-TLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFG---  826 (980)
T ss_dssp             HHHHHHHHHHHHHTT---TTS---HHHHHHHHH-HHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCT---
T ss_pred             HHHHHHHHHHHHHHH---HHH---HHHHHHHHH-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCch---
Confidence            678888888876421   111   122222221 13444555665432         22555556677777753211   


Q ss_pred             hhHHHhh--chH----HHHHHH-hcCCCHHHHHHHHHHHHhhc
Q 010080          475 TKLVERE--DGI----DAMERF-QFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       475 ~~~ie~~--ggl----~~l~~L-~~~~~~~i~~~a~~il~~~f  510 (518)
                      ...+.+.  +-+    ..|... ..++++...+.|..++.++.
T Consensus       827 ~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v  869 (980)
T 3ibv_A          827 SILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMV  869 (980)
T ss_dssp             GGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred             hhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence            1222221  222    233322 23477889999988887754

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.48  E-value=0.63  Score=44.31  Aligned_cols=188  Identities=15%  Similarity=0.141  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHH
Q 010080          270 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL  349 (518)
Q Consensus       270 ~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L  349 (518)
                      ...+.-.| +|.-.+...++-++..+++..+...+ +.++.++....++.|-..+....   -...+     -...+|.+
T Consensus       260 vtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDaks---L~~t~-----L~e~LPFi  329 (619)
T 3c2g_A          260 IIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAKA---LAKTP-----LENILPFL  329 (619)
T ss_dssp             HHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCGG---GGTSC-----CTTHHHHH
T ss_pred             HHHHHHHH-HHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchHH---Hhhcc-----ccccchHH
Confidence            33344334 44444666788888888888888877 58888888888888877653322   11222     13588988


Q ss_pred             HHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC-------CChhHHHHHHHHHHHhcC------
Q 010080          350 VKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-------SPFDIKKEVAYVLGNLCV------  415 (518)
Q Consensus       350 ~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~-------~~~~v~~eA~~aL~nl~~------  415 (518)
                      +..+. |++..+.......|||..++........+..|.++.|...+..       .+..-++-||..++|...      
T Consensus       330 ~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL  409 (619)
T 3c2g_A          330 LRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL  409 (619)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence            88874 6677899999999999999997777778899999999998743       244456778888877532      


Q ss_pred             ---CCCCCCC----CchhHHHHHHHHHhcCchHHHHHhhccCC------HHHHHHHHHHHHHHHcc
Q 010080          416 ---SPTEGEG----KPKLIQEHLVSLVGRGCLSGFIDLVRSAD------IEAARLGLQFMELVLRG  468 (518)
Q Consensus       416 ---~~~~~~~----~~~~~~~~~~~l~~~g~i~~L~~lL~~~d------~~~~~~~l~~l~~il~~  468 (518)
                         -+..+|.    .+.+ ++|+..+++..+++.|...|....      -++...+|+....+++.
T Consensus       410 MmWIPm~NGqr~~~G~~E-qQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRT  474 (619)
T 3c2g_A          410 MMWIPTPNGETKTAGPNE-KQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRT  474 (619)
T ss_dssp             GGGSCCTTSCCCCCCHHH-HHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTC
T ss_pred             eEEEecCCCccccCChHH-HHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcC
Confidence               1211111    1222 356677778889999999887633      25666788887777764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.11  Score=48.80  Aligned_cols=183  Identities=14%  Similarity=0.127  Sum_probs=115.7

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHH-H-cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC------ChHH
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPI-ETAL-K-AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG------KQEE  160 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~-~~~i-~-~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~------~~~~  160 (518)
                      .+.|.+=..+.+|+..+.+++........ +..+ . ....+.+-.++. +.+...+..|+.++..++..      ....
T Consensus        17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~~~~~~   95 (278)
T 4ffb_C           17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSSLKNAH   95 (278)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred             hcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence            34588899999999999998875432111 1111 1 234555666665 44455666688888887642      1222


Q ss_pred             HHHhc-CChHHHHHh-hcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080          161 TKALL-PALPLLIAH-LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK  238 (518)
Q Consensus       161 ~~~v~-~~v~~Lv~l-L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  238 (518)
                      ...++ ..+|.|+.- |.+ ....++..|..++..++...... ..     +++.++..+.+.++.++..++-.|..+..
T Consensus        96 ~~~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           96 NITLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            33334 478888864 666 68889999888887766422111 11     24566677788889888888777777654


Q ss_pred             CCCCC--chhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          239 GPDPK--PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       239 ~~~~~--~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      ...+.  +....  ...+++.+..++.+.|++|+..+.-++..+-.
T Consensus       169 ~fg~~~~~~k~~--l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          169 AFGLTNVNVQTF--LPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHTTTTCCHHHH--HHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HhCCCcCCchhH--HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            31111  11111  23566778889999999999999998877765

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.28  E-value=0.058  Score=49.44  Aligned_cols=144  Identities=14%  Similarity=0.150  Sum_probs=101.9

Q ss_pred             hhhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC-CchhHHH---HH
Q 010080          357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG-KPKLIQE---HL  431 (518)
Q Consensus       357 ~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~-~~~~~~~---~~  431 (518)
                      +.....++..+|..|.. +......++.+ +.+..|...|.+..+.+++.|+..|+-+|..+.+. | -. .+.+   +.
T Consensus        67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~-G~~~-~VL~Al~~~  143 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPE-DMNE-RVLEAMTER  143 (233)
T ss_dssp             HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSS-CHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCC-ChHH-HHHHHHHHH
Confidence            34667888899988865 44556666654 67899999999999999999999998888864311 2 11 1111   11


Q ss_pred             HHHHhcCchHHHHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcc----hhHHHhhchHHHHHHHhcCCCHHHHHHHH
Q 010080          432 VSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNMAN  503 (518)
Q Consensus       432 ~~l~~~g~i~~L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~----~~~ie~~ggl~~l~~L~~~~~~~i~~~a~  503 (518)
                      +..-+..-+.++++.|. ..+.+....++.++..++...++-..    +..+..+|-.+.|+.|...+++++..+-.
T Consensus       144 ~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          144 AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             HHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence            22223456778888887 46678888999999999887655332    34566788888899999999999876544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.17  E-value=0.054  Score=50.44  Aligned_cols=103  Identities=10%  Similarity=0.108  Sum_probs=79.7

Q ss_pred             hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 010080          344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG  422 (518)
Q Consensus       344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~  422 (518)
                      -++|.|+.-+.+++..+|..+--++-.+..- .+.        .+++.+++-+++.+.++|.+++..+..+....    |
T Consensus       132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~----G  199 (266)
T 2of3_A          132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA----G  199 (266)
T ss_dssp             HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH----C
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc----C
Confidence            4899999999998888888777766555421 221        26778888899999999999999999886531    2


Q ss_pred             CchhHHHHHHHHHhcCch---HHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080          423 KPKLIQEHLVSLVGRGCL---SGFIDLVRSADIEAARLGLQFMELVLRGM  469 (518)
Q Consensus       423 ~~~~~~~~~~~l~~~g~i---~~L~~lL~~~d~~~~~~~l~~l~~il~~~  469 (518)
                      .+           ....+   +.+..++.+.|..+...|+.++..+.+..
T Consensus       200 ~~-----------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          200 IS-----------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             SG-----------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CC-----------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            11           23468   99999999999999999999998877654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.45  E-value=0.32  Score=48.00  Aligned_cols=142  Identities=15%  Similarity=0.170  Sum_probs=101.8

Q ss_pred             hhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHH---HHHH
Q 010080          358 RVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE---HLVS  433 (518)
Q Consensus       358 ~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~---~~~~  433 (518)
                      ..++.+++.||..|... ......++.+ ..+..|+..|.+..+.+++.|+..|+-+|..+.+.||-+. +.+   +...
T Consensus       134 ~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~-VL~Al~~~~~  211 (383)
T 3eg5_B          134 SRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNER-VLEAMTERAE  211 (383)
T ss_dssp             HHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHH-HHHHHHHHHH
Confidence            36778888888888654 4556666654 6789999999999999999999999999886531222111 111   1122


Q ss_pred             HHhcCchHHHHHhhcc-CCHHHHHHHHHHHHHHHccCCCCcc----hhHHHhhchHHHHHHHhcCCCHHHHHH
Q 010080          434 LVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNM  501 (518)
Q Consensus       434 l~~~g~i~~L~~lL~~-~d~~~~~~~l~~l~~il~~~~~~~~----~~~ie~~ggl~~l~~L~~~~~~~i~~~  501 (518)
                      ..+..-+.++++.|.. .+.+....++.+|..++...++-..    +..+..+|..+.++.|...+++++..+
T Consensus       212 ~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          212 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence            2244568889999987 6788999999999999987665332    345667888888999988888877654

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=95.41  E-value=1.7  Score=48.92  Aligned_cols=150  Identities=13%  Similarity=0.143  Sum_probs=85.2

Q ss_pred             HHHHHHhcCCCChHHHHH-HHHHHHHHhcCChH-HHHHhc-CChHHHHHhhcCCC----CHHHHHHHHHHHHhhhCCChh
Q 010080          128 PVLVQCLAFGSPDEQLLE-AAWCLTNIAAGKQE-ETKALL-PALPLLIAHLGEKS----SSPVAEQCAWALGNVAGEGEE  200 (518)
Q Consensus       128 p~Lv~~L~~~~~~~~~~e-A~~~L~nia~~~~~-~~~~v~-~~v~~Lv~lL~~~~----~~~v~~~a~~~L~nla~d~~~  200 (518)
                      +.|-+.+..+.+....+| ++|+++.||..-.+ .-+.++ ..++.|+.+.....    ...++...+|++|..+.--..
T Consensus       480 ~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~  559 (1073)
T 3gjx_A          480 KKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA  559 (1073)
T ss_dssp             HHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh
Confidence            333333343333455567 79999999854332 232333 68888888875421    234555567999987542111


Q ss_pred             hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH-----hhchHHHHHHH----hccCChhHHH
Q 010080          201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK-----VDGLLDAILRH----LKRADEELTT  271 (518)
Q Consensus       201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~-----~~~~l~~L~~l----L~~~d~~v~~  271 (518)
                      ....  -...+..|+..+..+++.++..|+-++..+|.....    .++.     ....++.++..    ...-+++-..
T Consensus       560 h~~~--L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~----~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~  633 (1073)
T 3gjx_A          560 HWKF--LKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRR----HFVQVQVGEVMPFIDEILNNINTIICDLQPQQVH  633 (1073)
T ss_dssp             CHHH--HHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG----GGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHH
T ss_pred             CHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH----HHhhccccccchHHHHHHHHHHHHHHhcCHHHHH
Confidence            1111  122456677777778899999999999999965321    1110     01233333332    2233455566


Q ss_pred             HHHHHHHHhhcC
Q 010080          272 EVAWVVVYLSAL  283 (518)
Q Consensus       272 ~a~~~L~~L~~~  283 (518)
                      ...-+++++...
T Consensus       634 ~lyeav~~vi~~  645 (1073)
T 3gjx_A          634 TFYEAVGYMIGA  645 (1073)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            667777777764

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.30  E-value=0.39  Score=47.44  Aligned_cols=142  Identities=14%  Similarity=0.158  Sum_probs=100.4

Q ss_pred             hhhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC-CchhHHH---HH
Q 010080          357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG-KPKLIQE---HL  431 (518)
Q Consensus       357 ~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~-~~~~~~~---~~  431 (518)
                      +.....+++.||..|... ......++.+ +.+..|...|.+..+.+++.|+..|..+|..+.+. | -. .|.+   +.
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~-G~~~-~VL~Al~~~  147 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPE-DMNE-RVLEAMTER  147 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSST-THHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCC-ChHH-HHHHHHHHH
Confidence            346678888899888654 3455566654 67899999999999999999998888888864311 2 11 1111   11


Q ss_pred             HHHHhcCchHHHHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcc----hhHHHhhchHHHHHHHhcCCCHHHHHH
Q 010080          432 VSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNM  501 (518)
Q Consensus       432 ~~l~~~g~i~~L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~----~~~ie~~ggl~~l~~L~~~~~~~i~~~  501 (518)
                      ...-+..-+.++++.|. ..+.+....++.+|..|+...++-..    +..+..+|-.+.|+.|...+++++..+
T Consensus       148 ~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          148 AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             HHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence            12223456777888887 46678888999999999987765332    355677888888999999899888765

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.16  E-value=0.2  Score=46.64  Aligned_cols=173  Identities=12%  Similarity=0.069  Sum_probs=112.3

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-c-CCHHHHHHHhcCCCChHHHHHHHHHHHHHh----cCChHHHHH
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALK-A-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIA----AGKQEETKA  163 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~-~-g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia----~~~~~~~~~  163 (518)
                      .+.+.|...++.|+..|.+.++...    ..++. . .+++.+.--+. +++..+...++..|..+.    ...+.-...
T Consensus        54 ~lfs~d~k~~~~ale~L~~~l~~~~----~~~~~~lDll~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           54 QLFHKDFKQHLAALDSLVRLADTSP----RSLLSNSDLLLKWCTLRFF-ETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHCH----HHHHHTHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhhCh----HHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            3458899999999999999877532    22332 1 12333332222 334445445555555553    211112222


Q ss_pred             hc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC
Q 010080          164 LL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP  242 (518)
Q Consensus       164 v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~  242 (518)
                      .. -.+|.|+.-+.. +.+.+++.+-.++..++.-.+       ...+++.++.-+.+.+...+..++-.+.++......
T Consensus       129 ea~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~  200 (266)
T 2of3_A          129 EVSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI  200 (266)
T ss_dssp             HHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence            22 268999999987 788999998888776654211       122456677777888888998888888887754322


Q ss_pred             CchhhHHHhhchH---HHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080          243 KPATELIKVDGLL---DAILRHLKRADEELTTEVAWVVVYLSA  282 (518)
Q Consensus       243 ~~~~~~i~~~~~l---~~L~~lL~~~d~~v~~~a~~~L~~L~~  282 (518)
                      .+       ..++   |.+.+++.+.|..|+..|..++..+-.
T Consensus       201 ~~-------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          201 SP-------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             GG-------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             Cc-------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            21       2467   999999999999999999999886554

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.03  E-value=0.97  Score=50.96  Aligned_cols=174  Identities=16%  Similarity=0.143  Sum_probs=101.8

Q ss_pred             HHHHHhcCC---hhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc----CChhHHHHHH
Q 010080          202 RNVLLSQGA---LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVA  274 (518)
Q Consensus       202 r~~~~~~g~---i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~----~d~~v~~~a~  274 (518)
                      .+.+...|-   +..+..++.+.+....+ ++++|..+....  .|..      ..+..+..++.+    .++.+...++
T Consensus       346 lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~--~Pt~------e~l~~~~~l~~~~~~~~~~~l~~ta~  416 (1056)
T 1lsh_A          346 LDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ--QATR------ESLSYARELLNTSFIRNRPILRKTAV  416 (1056)
T ss_dssp             HHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC--CCCH------HHHHHHHHHHTCHHHHTCHHHHHHHH
T ss_pred             HHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC--CCCH------HHHHHHHHHHhCcccccCHHHHHHHH
Confidence            334444443   33445555565544444 445554443332  2333      344556666653    3456667777


Q ss_pred             HHHHHhhcC---CchhhhHHHhcCchHHHHHHHc---cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHH
Q 010080          275 WVVVYLSAL---SNVATSLLVKSGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV  348 (518)
Q Consensus       275 ~~L~~L~~~---~~~~~~~~~~~g~~~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~  348 (518)
                      -+++.|+..   ....+    ....++.+.+.|.   ...+.+-..-++++|||+-..                 ..++.
T Consensus       417 La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------------~~l~~  475 (1056)
T 1lsh_A          417 LGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------------NSIKK  475 (1056)
T ss_dssp             HHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------------GGHHH
T ss_pred             HHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------------hHHHH
Confidence            777766631   11111    1122344443332   244556678899999998532                 26677


Q ss_pred             HHHHhcc-------ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh--cCCChhHHHHHHHHHHHh
Q 010080          349 LVKCLKS-------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL--STSPFDIKKEVAYVLGNL  413 (518)
Q Consensus       349 L~~lL~~-------~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL--~~~~~~v~~eA~~aL~nl  413 (518)
                      |..++..       ....++..|+|+|.+++...+..++        +.|..++  ...++++|..|+..|...
T Consensus       476 l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t  541 (1056)
T 1lsh_A          476 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES  541 (1056)
T ss_dssp             HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred             HHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence            7777742       1246889999999999876655543        4567777  556789999999998764

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.96  E-value=0.22  Score=45.08  Aligned_cols=179  Identities=13%  Similarity=0.037  Sum_probs=112.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  160 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~  160 (518)
                      +.++..-+..+.++ ......+...+++-++      .     ...++..-.+.++ +..+.++-|+..|+.. ....  
T Consensus        39 ~~~~~~~~~~~~~g-f~~~~~~a~~~~~~~~------~-----~~~~~la~~L~~~-~~deVR~~Av~lLg~~-~~~~--  102 (240)
T 3l9t_A           39 VARLEKDFSLIEHG-FKEEEQRALTDYKSND------G-----EYIKKLAFLAYQS-DVYQVRMYAVFLFGYL-SKDK--  102 (240)
T ss_dssp             HHHHHHHHTC------CHHHHHHHHHHHHSC------H-----HHHHHHHHHHHTC-SSHHHHHHHHHHHHHT-TTSH--
T ss_pred             HHHHHHHHHHhhcc-cHHHHHHHHHHHHhCC------H-----HHHHHHHHHHHhC-cchHHHHHHHHHHHhc-cCcH--
Confidence            34444444333333 3445566666666333      1     1223444445444 4466767788888777 3111  


Q ss_pred             HHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhC-CChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080          161 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAG-EGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       161 ~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~-d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~  239 (518)
                           ..++.+...+...++-.|++.++.+++.++. ..++        ..++.+.....+++..++|.|+-.+.--|..
T Consensus       103 -----~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~  169 (240)
T 3l9t_A          103 -----EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR  169 (240)
T ss_dssp             -----HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS
T ss_pred             -----HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc
Confidence                 2455666534444789999999999999884 3333        1567788888899999999998777554533


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh
Q 010080          240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK  293 (518)
Q Consensus       240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~  293 (518)
                      ...+..     ...++|.|-.+..+++.-|+..+.|.|..++..+++-...+++
T Consensus       170 ~~~k~d-----p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~  218 (240)
T 3l9t_A          170 PYFKEN-----PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK  218 (240)
T ss_dssp             TTTTTC-----HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhcC-----HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence            111111     2357788888888888899999999999999877766555544

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.74  E-value=1.9  Score=43.15  Aligned_cols=122  Identities=13%  Similarity=0.089  Sum_probs=85.2

Q ss_pred             CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHH
Q 010080          180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL  259 (518)
Q Consensus       180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~  259 (518)
                      +...+.-|+..+.....+.|+..+.     +|..++.|+..++..++.+|+..|..+|++ .      .  ...+..+|+
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~------~--i~kiaDvL~  106 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-E------N--LPRVADILT  106 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T------C--HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h------h--hhhHHHHHH
Confidence            4667777777777777666666554     345667777778889999999999999976 1      1  347788999


Q ss_pred             HHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080          260 RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       260 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~  324 (518)
                      ++|..+++.-...+-++|..|...++        .+.+..+...+. .++..++..++..|..-+
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~-~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQIL-QGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHH-HSCHHHHHHHHHHHHHHG
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHc-ccchHHHHHHHHHHHHHH
Confidence            99999998878888888877776332        233444444443 245667777777775433

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=93.83  E-value=0.037  Score=51.03  Aligned_cols=67  Identities=19%  Similarity=0.171  Sum_probs=38.6

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI  249 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i  249 (518)
                      .|..++.+ +++.|+..++..|                  ..+.|..++++++..++..++..   +     +.      
T Consensus        78 ~l~~L~~D-~~~~VR~~aA~~L------------------~~~~L~~ll~D~d~~VR~~aA~~---l-----~~------  124 (244)
T 1lrv_A           78 ALTPLIRD-SDEVVRRAVAYRL------------------PREQLSALMFDEDREVRITVADR---L-----PL------  124 (244)
T ss_dssp             GGGGGTTC-SSHHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHHH---S-----CT------
T ss_pred             HHHHHccC-cCHHHHHHHHHHC------------------CHHHHHHHHcCCCHHHHHHHHHh---C-----CH------
Confidence            34444444 6677777766532                  12456677777777777777663   2     10      


Q ss_pred             HhhchHHHHHHHhccCChhHHHHHHH
Q 010080          250 KVDGLLDAILRHLKRADEELTTEVAW  275 (518)
Q Consensus       250 ~~~~~l~~L~~lL~~~d~~v~~~a~~  275 (518)
                            +.+..++++++..|+..++.
T Consensus       125 ------~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          125 ------EQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             ------GGGGGGTTCSSHHHHHHHHH
T ss_pred             ------HHHHHHHcCCCHHHHHHHHH
Confidence                  11334456667777776665

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.42  E-value=1.9  Score=43.15  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=93.4

Q ss_pred             CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCC
Q 010080          308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA  387 (518)
Q Consensus       308 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~  387 (518)
                      ++.+...-|...|......-++..           ..++..++.+....+..||+.|...|..+|.+  +++..+     
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~-----------~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki-----  101 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELA-----------DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV-----  101 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGH-----------HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH-----
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhH-----------HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH-----
Confidence            456666777778887776655432           35788899999999999999999999999987  455544     


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHc
Q 010080          388 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR  467 (518)
Q Consensus       388 i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~  467 (518)
                      ...|+++|++.+..-...+-++|..+...                  -..+.+..|++-+..+|..+...++.+|..-+.
T Consensus       102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~------------------Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~  163 (507)
T 3u0r_A          102 ADILTQLLQTDDSAEFNLVNNALLSIFKM------------------DAKGTLGGLFSQILQGEDIVRERAIKFLSTKLK  163 (507)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHHH------------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhc------------------ChHHHHHHHHHHHcccchHHHHHHHHHHHHHHh
Confidence            45899999998876666666666555331                  123466777777777888888899998877776


Q ss_pred             cCCC
Q 010080          468 GMPN  471 (518)
Q Consensus       468 ~~~~  471 (518)
                      ..+.
T Consensus       164 ~l~~  167 (507)
T 3u0r_A          164 TLPD  167 (507)
T ss_dssp             GSCT
T ss_pred             hcch
Confidence            5443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=93.04  E-value=0.96  Score=46.19  Aligned_cols=243  Identities=17%  Similarity=0.122  Sum_probs=147.7

Q ss_pred             hHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-------cCC---hhHHHHHHHHHHHhh
Q 010080          212 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-------RAD---EELTTEVAWVVVYLS  281 (518)
Q Consensus       212 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-------~~d---~~v~~~a~~~L~~L~  281 (518)
                      ..|+.-|-++..+++--|+.+|..+.+.......+.......+.-.|+-++.       ..|   ..|++.++-+|+.+ 
T Consensus       177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-  255 (800)
T 3oc3_A          177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-  255 (800)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred             HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence            3444455577899999999999998864321000000001122222222221       122   25888888888888 


Q ss_pred             cCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhH
Q 010080          282 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK  361 (518)
Q Consensus       282 ~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~  361 (518)
                      ..-++.      ..++..|+..+ .....+++..++-.|.++   . +.... +       .++++.++..|.+.+..|+
T Consensus       256 ~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL---~-DLL~~-L-------d~Vv~aVL~GL~D~DDDVR  316 (800)
T 3oc3_A          256 YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL---K-EFVED-K-------DGLCRKLVSLLSSPDEDIK  316 (800)
T ss_dssp             TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT---G-GGCCC-H-------HHHHHHHHHHTTCSSHHHH
T ss_pred             HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH---H-HHHHH-H-------HHHHHHHHhhcCCcccHHH
Confidence            433322      34455555444 466788888888888887   1 11111 3       3689999999999999999


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC-Chh-HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc
Q 010080          362 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS-PFD-IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC  439 (518)
Q Consensus       362 ~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~-v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~  439 (518)
                      .-|+-+|.-++  .++.+..++     ..+-+.|.+. |-. -.....-.|+.++..+.....             ....
T Consensus       317 AVAAetLiPIA--~p~~l~~LL-----~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~-------------dp~L  376 (800)
T 3oc3_A          317 LLSAELLCHFP--ITDSLDLVL-----EKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI-------------PPER  376 (800)
T ss_dssp             HHHHHHHTTSC--CSSTHHHHH-----HHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC-------------CSGG
T ss_pred             HHHHHHhhhhc--chhhHHHHH-----HHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc-------------ChHH
Confidence            99999999998  333333333     3344444332 211 222334456666654422111             1257


Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHH-HHHHhcCCCHHHHHHHHHHHH
Q 010080          440 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA-MERFQFHENEDLRNMANGLVD  507 (518)
Q Consensus       440 i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~-l~~L~~~~~~~i~~~a~~il~  507 (518)
                      +|.|.-+|...-+.+...+++++..++    +         ...+.. .+++.-.++++|.+.+.++..
T Consensus       377 VPRL~PFLRHtITSVR~AVL~TL~tfL----~---------~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          377 LKDIFPCFTSPVPEVRTSILNMVKNLS----E---------ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGGTGGGGTCSSHHHHHHHHHHTTTCC----C---------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHHHH----h---------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            899999999999999999988887765    1         112232 366778899999999988775

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.00  E-value=6.4  Score=37.46  Aligned_cols=236  Identities=12%  Similarity=0.138  Sum_probs=147.8

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh----hhHHHHHhcCChhHHHh-hhC-CCChhHHHHHHHHHHHhhcC
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE----EFRNVLLSQGALPPLAR-MML-PNKGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~----~~r~~~~~~g~i~~L~~-ll~-~~~~~~~~~a~~~L~nL~~~  239 (518)
                      +.+..|+..|.. -+.+-+..+..+++++.....    ...+++...   |-++. ++. -+++++.-++.-.|.-.++.
T Consensus        78 dll~~Li~~l~~-L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~---peil~~L~~gYe~~diAl~~G~mLRecir~  153 (341)
T 1upk_A           78 GLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ---QNILFMLLKGYESPEIALNCGIMLRECIRH  153 (341)
T ss_dssp             SHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC---THHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHhccc-CCchhhccHHHHHHHHHhcccCCCCchhHHHHcC---HHHHHHHHHhhccchhHhHHHHHHHHHHHh
Confidence            456677777765 577888888888888765432    233444432   22232 222 13556666666667777765


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcC---chHHHHHHHccCCCccchhhh
Q 010080          240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG---VLQLLVERLATSNSLQLLIPV  316 (518)
Q Consensus       240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g---~~~~Lv~lL~~~~~~~v~~~a  316 (518)
                      .   .....+...+.+-.+...+..++=+|..+|..++..|...........+..+   .+.....+| .+++--++..+
T Consensus       154 e---~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll-~S~NYVTkRQS  229 (341)
T 1upk_A          154 E---PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVTKRQS  229 (341)
T ss_dssp             H---HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHHHHHH
T ss_pred             H---HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh-cCCcchhHHHH
Confidence            2   2333444556666777788888889999999999988775544444444432   455566666 57777788899


Q ss_pred             hhhhhhhhcCCCcc--cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC---CHHHHHHHHhC--CCHH
Q 010080          317 LRSLGNLVAGDSST--ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---SVEHKQLIHSS--EALA  389 (518)
Q Consensus       317 l~~L~nl~~~~~~~--~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~---~~~~~~~li~~--~~i~  389 (518)
                      ++.||.+.......  ....+.     +..-+..++.+|.+.+..|+.+|..+.--.++.   +++....++..  .++.
T Consensus       230 lKLLgelLldr~N~~vM~~Yis-----~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~  304 (341)
T 1upk_A          230 LKLLGELLLDRHNFTIMTKYIS-----KPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIE  304 (341)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHhCchHHHHHHHHhC-----CHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHH
Confidence            99999998664321  122232     246789999999999999999999998877774   23333333332  3444


Q ss_pred             HHHHHhcC--CChhHHHHHHHHHHHhc
Q 010080          390 LLLHLLST--SPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       390 ~Li~lL~~--~~~~v~~eA~~aL~nl~  414 (518)
                      .|-+...+  .|.....|=.+.|..|.
T Consensus       305 fl~~f~~d~~eDeqF~dEK~~lI~~I~  331 (341)
T 1upk_A          305 FLSKFQNDRTEDEQFNDEKTYLVKQIR  331 (341)
T ss_dssp             HHHHTTTTC-CCSHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCcchhhHHHHHHHHHHHHH
Confidence            44444433  24455555555554443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=92.89  E-value=2.6  Score=39.90  Aligned_cols=183  Identities=13%  Similarity=0.014  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC------ChHH
Q 010080           97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP------ALPL  170 (518)
Q Consensus        97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~------~v~~  170 (518)
                      +..+.++..+...++....+..    ....+..+..+++.+.  +..+-++-.+.-.+. .+.....+.+      .+..
T Consensus        79 ~~el~~L~~l~~~l~~~s~~~~----~~~~l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~  151 (304)
T 3ebb_A           79 EDDLILLEKILSLICNSSSEKP----TVQQLQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSH  151 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCC----CHHHHHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcc----chHHHHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHH
Confidence            4556666666665553221111    1123455555554332  233445555555443 2222222221      2223


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc--CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080          171 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL  248 (518)
Q Consensus       171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  248 (518)
                      ++..+.+...+..+-.++++++|+.. ++..|+.++..  .+++.+...+.+++..++..++..+.|++-........+.
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~  230 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG  230 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence            44455443456678999999999988 66788877753  2334444444456788888999999998753100011121


Q ss_pred             HHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhh
Q 010080          249 IKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATS  289 (518)
Q Consensus       249 i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~  289 (518)
                        ...++..+..++. ..|+|....++-+|++|...+.+..+
T Consensus       231 --~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~  270 (304)
T 3ebb_A          231 --KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQ  270 (304)
T ss_dssp             --HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHH
Confidence              1235555556665 45789999999999999976543333

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=92.88  E-value=7.1  Score=44.66  Aligned_cols=304  Identities=13%  Similarity=0.090  Sum_probs=161.4

Q ss_pred             HHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhc-CCCChHHHHHHHHHHHHHhcC--
Q 010080           82 EELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA-FGSPDEQLLEAAWCLTNIAAG--  156 (518)
Q Consensus        82 ~~l~~~l~~~~s~--~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~-~~~~~~~~~eA~~~L~nia~~--  156 (518)
                      .++.++++...++  |.+.+.+|-..|.++ ...  |        ...+.+...|. ...+...++-|+..|.|....  
T Consensus        11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~-~~~--p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W   79 (1204)
T 3a6p_A           11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEF-KEK--C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW   79 (1204)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHHHHHHH-HHH--C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHH-HhC--c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence            4455555544344  677788888888774 221  1        13444444444 334455666688888887632  


Q ss_pred             ---ChHHHHHhcC-ChHHHHHhhcCC--CCHHHHHHHHHHHHhhhCCC-hhhHHHHHhcCChhHHHhhhCCCChhHHHHH
Q 010080          157 ---KQEETKALLP-ALPLLIAHLGEK--SSSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPNKGSTVRTA  229 (518)
Q Consensus       157 ---~~~~~~~v~~-~v~~Lv~lL~~~--~~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a  229 (518)
                         +.+.+..+.+ .+..+...-...  ....++.+.+.++..|+... +..     =.+.++.|+.++++ +......+
T Consensus        80 ~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~-~~~~~e~~  153 (1204)
T 3a6p_A           80 NGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ-GETQTELV  153 (1204)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT-CHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC-CHHHHHHH
Confidence               3444444443 444444332111  35789999999999887521 110     12456677777765 44557778


Q ss_pred             HHHHHHhhcC---CCC-Cchhh-----HHH--hhchHHHHHHHhcc-------------------CChhHHHHHHHHHHH
Q 010080          230 AWALSNLIKG---PDP-KPATE-----LIK--VDGLLDAILRHLKR-------------------ADEELTTEVAWVVVY  279 (518)
Q Consensus       230 ~~~L~nL~~~---~~~-~~~~~-----~i~--~~~~l~~L~~lL~~-------------------~d~~v~~~a~~~L~~  279 (518)
                      +.+|..|+..   ... ...+.     .+.  ...+++.+..++..                   ++.++...++.++..
T Consensus       154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            8888888742   111 01110     111  01333444444432                   123456666667665


Q ss_pred             hhcCCchhhhHHHhcC--chHHHHHHHccCCCccchhhhhhhhhhhhcCCC--cccceeeccCCCchhhhHHHHHHHhc-
Q 010080          280 LSALSNVATSLLVKSG--VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS--STISDVLVPGHGITDQVIAVLVKCLK-  354 (518)
Q Consensus       280 L~~~~~~~~~~~~~~g--~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~--~~~~~~i~~G~~~~~~~l~~L~~lL~-  354 (518)
                      ....-  ....+.+..  .++.+..++   .+++++..|+.||..++....  .....++..   +....+..++.... 
T Consensus       234 ~l~Wi--~~~~i~~~~~~ll~~l~~~l---~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~---l~~~~l~~l~~~~~~  305 (1204)
T 3a6p_A          234 YIDWV--SMSHITAENCKLLEILCLLL---NEQELQLGAAECLLIAVSRKGKLEDRKPLMVL---FGDVAMHYILSAAQT  305 (1204)
T ss_dssp             TTTTS--CHHHHHTTTSHHHHHHHHGG---GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGG---GSHHHHHHHHHHHHT
T ss_pred             HHhcc--CHHHHHhccchHHHHHHHHc---CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHH---HhhHHHHHHHHHhhc
Confidence            44322  233344432  566666544   357788999999999986432  111112210   01122334444431 


Q ss_pred             -------cChhhhHHHHHHHHHHhccCCHHHHHHHHhC-----------CCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          355 -------SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-----------EALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       355 -------~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-----------~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                             ..+..+.+..|.++..+..   . ...++..           ++++.++.++.+++..+-..++..-..+.
T Consensus       306 ~~~~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll  379 (1204)
T 3a6p_A          306 ADGGGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALF  379 (1204)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHH
Confidence                   2245677778888877752   2 2222221           35777777778887777776664333343

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=92.45  E-value=2.2  Score=38.51  Aligned_cols=144  Identities=10%  Similarity=0.019  Sum_probs=94.3

Q ss_pred             hHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHHHHHHHhhc-CCchhhh
Q 010080          212 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVYLSA-LSNVATS  289 (518)
Q Consensus       212 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~-~~~~~~~  289 (518)
                      +....|.+++..+++-.|+..|..+ .   +        ....++.+...+ ..+.=.|+..++-++..++. ..++   
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~---~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S---K--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T---T--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c---C--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            3334455666678888888877776 2   1        135667777633 33344677777888887774 2222   


Q ss_pred             HHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHH
Q 010080          290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS  369 (518)
Q Consensus       290 ~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Ls  369 (518)
                           ..++.+.... .+++..++..|.-.+..-+......+.         ..-++|.|-.+..+++..||+..+|.|.
T Consensus       139 -----~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~~~~k~d---------p~~ll~iL~~L~~D~s~yVrKSVan~Lr  203 (240)
T 3l9t_A          139 -----KALPIIDEWL-KSSNLHTRRAATEGLRIWTNRPYFKEN---------PNEAIRRIADLKEDVSEYVRKSVGNALR  203 (240)
T ss_dssp             -----TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGSTTTTTC---------HHHHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhccchhhcC---------HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                 1456666666 578888887766554332222111111         1247888888888899999999999999


Q ss_pred             HhccCCHHHHHHHHhC
Q 010080          370 NIAAGSVEHKQLIHSS  385 (518)
Q Consensus       370 nl~~~~~~~~~~li~~  385 (518)
                      .++..+|+.+..+++.
T Consensus       204 D~SK~~Pd~V~~~~~~  219 (240)
T 3l9t_A          204 DISKKFPDLVKIELKN  219 (240)
T ss_dssp             HHHTTCHHHHHHHHHT
T ss_pred             HHhhhCHHHHHHHHHH
Confidence            9999999887776653

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=90.55  E-value=14  Score=36.22  Aligned_cols=140  Identities=16%  Similarity=0.131  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcC----C------CChHHHHHHHHHHHHHhcCChHHHHHhc-
Q 010080           97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----G------SPDEQLLEAAWCLTNIAAGKQEETKALL-  165 (518)
Q Consensus        97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~----~------~~~~~~~eA~~~L~nia~~~~~~~~~v~-  165 (518)
                      ...+..+..|+..|...+...++.++ .+++..|+.+|..    .      .....+.+++.||..+... ......++ 
T Consensus        82 ~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~  159 (383)
T 3eg5_B           82 MHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLE  159 (383)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHc
Confidence            34567789999988887777778887 6678888888852    1      1235567789999988744 34556666 


Q ss_pred             --CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hh-HHHHH----------hcCChhHHHhhhCCC-ChhHHHHHH
Q 010080          166 --PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLPN-KGSTVRTAA  230 (518)
Q Consensus       166 --~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~ll~~~-~~~~~~~a~  230 (518)
                        ..+..+...|.+ +++.++..++..|+.+|.-+. +. ...++          +..-..+++..+.+. +.+...+++
T Consensus       160 ~~~~i~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m  238 (383)
T 3eg5_B          160 TEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL  238 (383)
T ss_dssp             CSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH
T ss_pred             ChHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHH
Confidence              378888888876 789999999999999886442 22 22222          334577788888764 555555554


Q ss_pred             HHHHHhhcC
Q 010080          231 WALSNLIKG  239 (518)
Q Consensus       231 ~~L~nL~~~  239 (518)
                      -.+-.++.+
T Consensus       239 ~lIN~li~~  247 (383)
T 3eg5_B          239 QLINALITP  247 (383)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            444445544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=90.35  E-value=9.9  Score=34.29  Aligned_cols=140  Identities=16%  Similarity=0.136  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcC----CC------ChHHHHHHHHHHHHHhcCChHHHHHhc-
Q 010080           97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----GS------PDEQLLEAAWCLTNIAAGKQEETKALL-  165 (518)
Q Consensus        97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~----~~------~~~~~~eA~~~L~nia~~~~~~~~~v~-  165 (518)
                      +...+-+..|+..|...+...++.+ ..+++..|+.+|..    ..      ....+.+++.||..+... ......++ 
T Consensus        16 ~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~   93 (233)
T 2f31_A           16 MHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLE   93 (233)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHT
T ss_pred             HHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHc
Confidence            3345667788877777666667777 46778888888752    11      234567799999988754 34555665 


Q ss_pred             --CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hh-HHHHH----------hcCChhHHHhhhCC-CChhHHHHHH
Q 010080          166 --PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLP-NKGSTVRTAA  230 (518)
Q Consensus       166 --~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~ll~~-~~~~~~~~a~  230 (518)
                        +++..+...|.+ +++.++..++..|+.+|.-+. +. ...++          +..-..+++..+.+ .+.+...+++
T Consensus        94 ~~~~i~~l~~~L~s-~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m  172 (233)
T 2f31_A           94 TEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL  172 (233)
T ss_dssp             SSSHHHHHHTTCCT-TSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH
T ss_pred             CcHHHHHHHHHhCC-CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHH
Confidence              378888888876 789999999988888876432 12 22222          23345567766663 3455555555


Q ss_pred             HHHHHhhcC
Q 010080          231 WALSNLIKG  239 (518)
Q Consensus       231 ~~L~nL~~~  239 (518)
                      -.+-.+..+
T Consensus       173 ~lIN~li~~  181 (233)
T 2f31_A          173 QLINALITP  181 (233)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHCC
Confidence            544455544

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=89.83  E-value=2.6  Score=38.43  Aligned_cols=138  Identities=17%  Similarity=0.142  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH
Q 010080          184 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI  258 (518)
Q Consensus       184 ~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L  258 (518)
                      ...|+-.|-.+|. .++.|..+++.++.-.|-.+|...     -..++-.+...++.|.+.+++ ....++...+++|..
T Consensus        73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~-eVi~fLL~tEiiplC  150 (268)
T 2fv2_A           73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQ-EVINFLLTTEIIPLC  150 (268)
T ss_dssp             HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCH-HHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcH-HHHHHHHhhhHHHHH
Confidence            4566667777887 789999999998877777888733     256777888889999976543 333455578999999


Q ss_pred             HHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh--------cCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080          259 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--------SGVLQLLVERLATSNSLQLLIPVLRSLGNLV  324 (518)
Q Consensus       259 ~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~  324 (518)
                      ++.+..+++--..-|...+..+.. ++.....+..        ..++..+|..+...+++.+...+++|--.++
T Consensus       151 Lrime~GselSKtvAtfIlqKIL~-dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs  223 (268)
T 2fv2_A          151 LRIMESGSELSKTVATFILQKILL-DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS  223 (268)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHH-SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhccHHHHHHHHHHHHHHhc-cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            999999998888888887776664 2333333322        1244455554444455555555555555554

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=89.61  E-value=12  Score=34.26  Aligned_cols=198  Identities=11%  Similarity=0.046  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH
Q 010080           80 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  159 (518)
Q Consensus        80 ~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~  159 (518)
                      +-+++.+++..-+....+.++..+...++++-... |.   ++ ..++|.++.+-. +...+++.-.+..|...+....+
T Consensus        13 ~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~d-p~---ll-~~~l~~il~~~~-~~~~~vrk~~~~Fi~e~~~~k~~   86 (257)
T 3gs3_A           13 ARAKVVDWCNELVIASPSTKCELLAKVQETVLGSC-AE---LA-EEFLESVLSLAH-DSNMEVRKQVVAFVEQVCKVKVE   86 (257)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTT-GG---GH-HHHHHHHHGGGG-CSCHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccC-Hh---HH-HHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHH
Confidence            44677788875555334799999999999766643 32   12 345677777643 34456666567777777643332


Q ss_pred             HHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhh--------CCCh------hhHHHHHhcCChhHHHhhhCCCChhH
Q 010080          160 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVA--------GEGE------EFRNVLLSQGALPPLARMMLPNKGST  225 (518)
Q Consensus       160 ~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla--------~d~~------~~r~~~~~~g~i~~L~~ll~~~~~~~  225 (518)
                         .+...++.|..+|.. +++.|...++.+.+++-        ..+.      ..-+.+.  ..=..+++++++.+..+
T Consensus        87 ---l~~~~l~~L~~Ll~d-~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gv  160 (257)
T 3gs3_A           87 ---LLPHVINVVSMLLRD-NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGI  160 (257)
T ss_dssp             ---GHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHH
T ss_pred             ---HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcch
Confidence               222477888888876 78999999998888763        2111      1111111  11223555666777888


Q ss_pred             HHHHHHHHHHhh--cCCC-CC-------ch------------hhHH--HhhchHHHHHHHhccC--ChhHHHHHHHHHHH
Q 010080          226 VRTAAWALSNLI--KGPD-PK-------PA------------TELI--KVDGLLDAILRHLKRA--DEELTTEVAWVVVY  279 (518)
Q Consensus       226 ~~~a~~~L~nL~--~~~~-~~-------~~------------~~~i--~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~  279 (518)
                      +-.+...+..+.  .... +.       ..            ...+  ...+.+..|+.++.+.  ++.....++.+|+.
T Consensus       161 kl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~  240 (257)
T 3gs3_A          161 RTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCT  240 (257)
T ss_dssp             HHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence            877777666533  2110 00       00            0111  1234566666665543  23356677777777


Q ss_pred             hhcCCchhhh
Q 010080          280 LSALSNVATS  289 (518)
Q Consensus       280 L~~~~~~~~~  289 (518)
                      |+...+....
T Consensus       241 Iak~RP~~~~  250 (257)
T 3gs3_A          241 IAKMRPIFMG  250 (257)
T ss_dssp             HHHHCGGGHH
T ss_pred             HHHhCcHHHH
Confidence            7765554433

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=89.59  E-value=19  Score=41.04  Aligned_cols=292  Identities=16%  Similarity=0.119  Sum_probs=154.4

Q ss_pred             ChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhc-CCCCHHHHHHHHHHHHhhhCC-----ChhhHHHHHhcCChh
Q 010080          139 PDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG-EKSSSPVAEQCAWALGNVAGE-----GEEFRNVLLSQGALP  212 (518)
Q Consensus       139 ~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~-~~~~~~v~~~a~~~L~nla~d-----~~~~r~~~~~~g~i~  212 (518)
                      ++..+.+|-..|..+-...        ++.+.+...|. .+.+..++..|+..|.|....     +++.|..+. ..++.
T Consensus        26 ~~~~r~~Ae~~L~~~~~~p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~   96 (1204)
T 3a6p_A           26 TQRYRLEALKFCEEFKEKC--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVME   96 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHC--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHH
T ss_pred             ChHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHH
Confidence            3445556766676664321        13344444443 346789999999999987532     233333333 22333


Q ss_pred             HHHhhhCC---CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC---C--
Q 010080          213 PLARMMLP---NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL---S--  284 (518)
Q Consensus       213 ~L~~ll~~---~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~--  284 (518)
                      .+......   ....++..++-+++.++...-|. ..     .++++.|++++.. ++.....++.+|..|+..   .  
T Consensus        97 ~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~  169 (1204)
T 3a6p_A           97 LIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-HW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT  169 (1204)
T ss_dssp             HHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-TC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-cc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence            33333211   34677788888888888653231 11     3678888888865 445566677778777641   1  


Q ss_pred             --chhhh----HHHhc--CchHHHHHHHccC------------------CCccchhhhhhhhhhhhcCCCcccceeeccC
Q 010080          285 --NVATS----LLVKS--GVLQLLVERLATS------------------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPG  338 (518)
Q Consensus       285 --~~~~~----~~~~~--g~~~~Lv~lL~~~------------------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G  338 (518)
                        .....    .+.+.  .+++.+...|.++                  .+..+...++.++.+...--+.  ..+++. 
T Consensus       170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~-  246 (1204)
T 3a6p_A          170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAE-  246 (1204)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTT-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhc-
Confidence              01111    11111  2233333333211                  1223556677777766543221  111110 


Q ss_pred             CCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC--HHHHHHHHhC---CCHHHHHHHhc--------CCChhHHHH
Q 010080          339 HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS--VEHKQLIHSS---EALALLLHLLS--------TSPFDIKKE  405 (518)
Q Consensus       339 ~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~--~~~~~~li~~---~~i~~Li~lL~--------~~~~~v~~e  405 (518)
                         ...+++.+..++.  ++.++..|+-+|..|+...  ++....++..   ..+..++..+.        ..+.++.+.
T Consensus       247 ---~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~  321 (1204)
T 3a6p_A          247 ---NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR  321 (1204)
T ss_dssp             ---TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred             ---cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence               0136777776655  4678999999999998743  3433333321   01234444442        123566777


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-----------cCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080          406 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-----------RGCLSGFIDLVRSADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       406 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-----------~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~  468 (518)
                      .+..+..+..              +...++.           .++++.++.++..++..+...++.+-..+++.
T Consensus       322 l~~ll~~lg~--------------~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          322 LCQVLCALGN--------------QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHH--------------HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH--------------HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            7777766641              1112211           13466666666666766666666666656554

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=87.67  E-value=0.6  Score=38.57  Aligned_cols=77  Identities=10%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC--------CHHHHHHHHHHHHhhc
Q 010080          439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--------NEDLRNMANGLVDKYF  510 (518)
Q Consensus       439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~--------~~~i~~~a~~il~~~f  510 (518)
                      ++..|..-|..+++.++.++|.+|..++..+.......+-.....+..+.+.+..+        +..|+.+|.++++-.|
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~  129 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF  129 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence            56777888888999999999999999987654211111222222333333333322        3689999999999999


Q ss_pred             CccCC
Q 010080          511 GEDYG  515 (518)
Q Consensus       511 ~~~~~  515 (518)
                      +++..
T Consensus       130 d~~~~  134 (140)
T 1vdy_A          130 SEENG  134 (140)
T ss_dssp             CCSSC
T ss_pred             CcCCC
Confidence            88764

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=87.62  E-value=3.4  Score=46.50  Aligned_cols=90  Identities=19%  Similarity=0.171  Sum_probs=61.4

Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-------CChhHHHHHHHHHHHhhcCC
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-------NKGSTVRTAAWALSNLIKGP  240 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~  240 (518)
                      ...|...+.+ .+.+-+..++.+|||+..  +         ..++.|..++..       ....++..|+|+|..+....
T Consensus       442 ~~~l~~~~~~-~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~  509 (1056)
T 1lsh_A          442 HDLLSQSSDR-AKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD  509 (1056)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred             HHHHHHHHhc-CChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc
Confidence            3344444555 467778899999999975  2         246667777642       13567789999999997431


Q ss_pred             CCCchhhHHHhhchHHHHHHHhc--cCChhHHHHHHHHHHH
Q 010080          241 DPKPATELIKVDGLLDAILRHLK--RADEELTTEVAWVVVY  279 (518)
Q Consensus       241 ~~~~~~~~i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~  279 (518)
                       |         ..+-+.++++..  ..+++++..|++.|..
T Consensus       510 -p---------~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~  540 (1056)
T 1lsh_A          510 -P---------RKVQEIVLPIFLNVAIKSELRIRSCIVFFE  540 (1056)
T ss_dssp             -H---------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred             -h---------HHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence             1         134456777774  5678999999998864

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=87.49  E-value=7.8  Score=35.35  Aligned_cols=88  Identities=15%  Similarity=0.142  Sum_probs=71.1

Q ss_pred             hccCCHHHHHHHHhCCCHHHHHHHhcCCC-----hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHH
Q 010080          371 IAAGSVEHKQLIHSSEALALLLHLLSTSP-----FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFID  445 (518)
Q Consensus       371 l~~~~~~~~~~li~~~~i~~Li~lL~~~~-----~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~  445 (518)
                      ..+..++....++++++.-.|.-.|...+     ..+|-.+..+|+.++...     +    .+.+.++++.+++|....
T Consensus        82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~d-----d----~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTD-----E----QEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGC-----C----HHHHHHHHHTTHHHHHHH
T ss_pred             HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccC-----c----HHHHHHHHhhhHHHHHHH
Confidence            33456688889999988777777775433     357888999999998642     2    477899999999999999


Q ss_pred             hhccCCHHHHHHHHHHHHHHHc
Q 010080          446 LVRSADIEAARLGLQFMELVLR  467 (518)
Q Consensus       446 lL~~~d~~~~~~~l~~l~~il~  467 (518)
                      .++.++.-.+.+|.-.++.|+.
T Consensus       153 ime~GselSKtvAtfIlqKIL~  174 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKILL  174 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHhc
Confidence            9999999888899899999985

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=87.00  E-value=2.4  Score=40.14  Aligned_cols=121  Identities=13%  Similarity=0.039  Sum_probs=77.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHH--cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-----hHHHHHhcC
Q 010080           94 GAMQKRVNALRELRRLLSRFEFPPIETALK--AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-----QEETKALLP  166 (518)
Q Consensus        94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~--~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~-----~~~~~~v~~  166 (518)
                      ..+.-++-+++.+.++.+....  .+.++.  ..+++.+...+.. .+..++.-++..+.|+|...     .+...   .
T Consensus       160 ~~p~n~ml~lR~l~NlF~~~~g--~~~l~~~~~~il~~~~~~~~~-~nknl~iA~ATl~~NlAv~~~~~~~~~~~~---~  233 (304)
T 3ebb_A          160 GKPANQLLALRTFCNCFVGQAG--QKLMMSQRESLMSHAIELKSG-SNKNIHIALATLALNYSVCFHKDHNIEGKA---Q  233 (304)
T ss_dssp             SCHHHHHHHHHHHHHGGGSHHH--HHHHHHTHHHHHHHHHGGGSS-CCHHHHHHHHHHHHHHHHHHHHSCCHHHHH---H
T ss_pred             CChHHHHHHHHHHHHccCCchh--HHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhcCCchHHH---H
Confidence            4567789999999998776532  233332  3345555555443 34567677889999998421     11111   1


Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP  220 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~  220 (518)
                      .+..+.+++....+.+....++-+||++...+.+.++.....|+-..+-+....
T Consensus       234 ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          234 CLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            344445555555688999999999999998777777666666655555555544

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=85.52  E-value=0.3  Score=44.92  Aligned_cols=64  Identities=16%  Similarity=0.149  Sum_probs=45.6

Q ss_pred             hhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhc
Q 010080          174 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG  253 (518)
Q Consensus       174 lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~  253 (518)
                      ++.+ +++.++..++..|                  ....|..++++++..++..++..|        +.          
T Consensus        58 ll~d-~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L--------~~----------  100 (244)
T 1lrv_A           58 YLAD-PFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL--------PR----------  100 (244)
T ss_dssp             GTTC-SSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS--------CS----------
T ss_pred             HhcC-CCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC--------CH----------
Confidence            3444 7899998888743                  133477788889999999988642        11          


Q ss_pred             hHHHHHHHhccCChhHHHHHHHH
Q 010080          254 LLDAILRHLKRADEELTTEVAWV  276 (518)
Q Consensus       254 ~l~~L~~lL~~~d~~v~~~a~~~  276 (518)
                        +.|..++.+++..|+..++..
T Consensus       101 --~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A          101 --EQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             --GGGGGTTTCSCHHHHHHHHHH
T ss_pred             --HHHHHHHcCCCHHHHHHHHHh
Confidence              235677888999999888774

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=80.10  E-value=37  Score=33.13  Aligned_cols=169  Identities=16%  Similarity=0.125  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcC----CC------ChHHHHHHHHHHHHHhcCChHHHHHhc--
Q 010080           98 KRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----GS------PDEQLLEAAWCLTNIAAGKQEETKALL--  165 (518)
Q Consensus        98 ~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~----~~------~~~~~~eA~~~L~nia~~~~~~~~~v~--  165 (518)
                      .....+..|+..|...+-..+..++ .+++..|+.+|..    ..      ....+.+++.||..+.... .....++  
T Consensus        21 ~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~-~Gl~~vl~~   98 (386)
T 2bnx_A           21 HLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTMLET   98 (386)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSH-HHHHHHHHS
T ss_pred             HHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCH-HHHHHHHcC
Confidence            3455678888878777666677776 5677778887752    11      2345677999999888543 3455555  


Q ss_pred             -CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hh-HHHHH----------hcCChhHHHhhhCC-CChhHHHHHHH
Q 010080          166 -PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLP-NKGSTVRTAAW  231 (518)
Q Consensus       166 -~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~ll~~-~~~~~~~~a~~  231 (518)
                       .++..+...|.+ +++.++..++..|+.+|.-+. .. ...++          +..-+.+++..+.. .+.+...+++-
T Consensus        99 ~~~i~~l~~sL~s-~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~  177 (386)
T 2bnx_A           99 EEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQ  177 (386)
T ss_dssp             SSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHH
T ss_pred             cHHHHHHHHHhCC-CCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHH
Confidence             478888888876 789999999988888876432 11 22222          23355667776663 35565555555


Q ss_pred             HHHHhhcCCCCCchh-----hHHHhhchHHHHHHHhccCChhHH
Q 010080          232 ALSNLIKGPDPKPAT-----ELIKVDGLLDAILRHLKRADEELT  270 (518)
Q Consensus       232 ~L~nL~~~~~~~~~~-----~~i~~~~~l~~L~~lL~~~d~~v~  270 (518)
                      .+-.+..+. +....     .-+...|+.+.+-++=..+++++.
T Consensus       178 lIN~lv~~~-~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~  220 (386)
T 2bnx_A          178 LINALITPA-EELDFRVHIRSELMRLGLHQVLQELREIENEDMK  220 (386)
T ss_dssp             HHHHHHTTC-SCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHCCC-CCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence            555566543 22211     111234666655555444555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	518
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-60
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-45
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-18
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-07
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-04
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-09
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.003

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  205 bits (521), Expect = 2e-60
 Identities = 144/519 (27%), Positives = 240/519 (46%), Gaps = 36/519 (6%)

Query: 9   HKRDPIKSSVGNVAAQ----RRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDM 64
           ++R   K+  G  +A     RR    V + K +R+  +  +R        DG  S + D 
Sbjct: 5   YRRTNFKNK-GRFSADELRRRRDTQQVELRKAKRDEALAKRR--NFIPPTDGADSDEEDE 61

Query: 65  MVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKA 124
                      Q    + ++   +       MQ++++A  + R++LSR   PPI+  ++A
Sbjct: 62  SSVSADQQFYSQLQQELPQMTQQLN---SDDMQEQLSATVKFRQILSREHRPPIDVVIQA 118

Query: 125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPA-LPLLIAHLGEKSSSPV 183
           G +P LV+ +    P+   LEAAW LTNIA+G   +TK ++ A    L   L    S  V
Sbjct: 119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 178

Query: 184 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK 243
            EQ  WALGNVAG+  ++R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+
Sbjct: 179 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 238

Query: 244 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVER 303
           P  +   V   L  + + +   D E   +  W + YLS     A   ++   + + LVE 
Sbjct: 239 P--DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 296

Query: 304 LATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE 363
             +  S  +  P LR++GN+V G+      V+  G       +  L   L S    +KKE
Sbjct: 297 -LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV------LPALRLLLSSPKENIKKE 349

Query: 364 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGK 423
           A W +SNI AG+ E  Q +  +  +  L+ LL  + +  KKE  + + N      +    
Sbjct: 350 ACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ---- 405

Query: 424 PKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR---------GMPNHEG 474
                + +  LV +GC+    DL+  AD     + L  +E +L+         G+  +E 
Sbjct: 406 ---RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINEN 462

Query: 475 TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513
              +E+  G++ +   Q +EN+ +   A  +++ YFGE+
Sbjct: 463 ADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 501

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  163 bits (411), Expect = 2e-45
 Identities = 132/453 (29%), Positives = 221/453 (48%), Gaps = 37/453 (8%)

Query: 69  EQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIP 128
            Q  +       V+ + S         ++ ++ A +  R+LLSR + PPI+  ++AG IP
Sbjct: 7   NQGTVNWSVEDIVKGINS-------NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 59

Query: 129 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQ 186
             V  L          E+AW LTNIA+G  E+TKA++   A+P  I+ L    +  ++EQ
Sbjct: 60  KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQ 118

Query: 187 CAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGST-----VRTAAWALSNLIKGPD 241
             WALGN+AG+G  FR++++  GA+ PL  ++     ST     +R   W LSNL +  +
Sbjct: 119 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 178

Query: 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLV 301
           P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    ++VK GV+  LV
Sbjct: 179 PAP--PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 236

Query: 302 ERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 361
           +    +  L ++ P LR++GN+V G       V+  G       +AV    L +    ++
Sbjct: 237 KL-LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA------LAVFPSLLTNPKTNIQ 289

Query: 362 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGE 421
           KEA W +SNI AG  +  Q + +   +  L+ +LS + F  +KE A+ + N     T   
Sbjct: 290 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-- 347

Query: 422 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGT----KL 477
                  E +V LV  G +   ++L+ + D +  ++ L  +  + +       T     +
Sbjct: 348 -------EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 400

Query: 478 VEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510
           +E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 401 IEECGGLDKIEALQRHENESVYKASLNLIEKYF 433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 1e-18
 Identities = 47/350 (13%), Positives = 103/350 (29%), Gaps = 28/350 (8%)

Query: 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVA 184
           IP  VQ L+      Q    A+ + +     +   + +     +  L+  L    +  V 
Sbjct: 4   IPKAVQYLSSQDEKYQA-IGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQ 61

Query: 185 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVR-TAAWALSNLIKGPDPK 243
           +  A AL N+       +     Q  +     ++     + ++      L NL    + K
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 244 PATELIKVDGLLDAILRH------------LKRADEELTTEVAWVVVYLSALSNVATSLL 291
                  +  L D ++               +  D E+       +  LS+      ++ 
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 292 VKSGVLQLLVERLATSNSLQLLIPV-----LRSLGNLVAGDSSTISDVL--VPGHGITDQ 344
             SG++  L+  +    +            +  L NL     + +      +  +     
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 404
                  C  ++   +              + +    ++ S+A+   L+L+  S  D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 405 EVAYVLGNLCVSPTEGEGKP----KLIQEHLVSLVGRGCLSGFIDLVRSA 450
           E          +              ++E  +  + R   SG  D+VRS 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 6e-07
 Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHL-----GE 177
           K   +P + + L  G+ D      A  L+N++              P +   L       
Sbjct: 329 KEKGLPQIARLLQSGNSDVVR-SGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNT 387

Query: 178 KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNL 236
            +S  +     + + N+     +      S   L  +  +            A   LS++
Sbjct: 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 35/215 (16%), Positives = 67/215 (31%), Gaps = 10/215 (4%)

Query: 118 IETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHL 175
              A  A        C +    D+ +     C         + +  L    A+   +  +
Sbjct: 234 EYNARNAYTEKSSTGCFS-NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292

Query: 176 GEKSSSPVAEQCAWALGNVAGEGEEF-----RNVLLSQGALPPLARMMLPNKGSTVRTAA 230
           G+       E CA AL N+            + + L +  LP +AR++       VR+ A
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352

Query: 231 WALSNLIKGPDPKPATELIKVDGLLDAILR--HLKRADEELTTEVAWVVVYLSALSNVAT 288
             LSN+ + P             +   +          E++ +   + V  L A      
Sbjct: 353 SLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLA 412

Query: 289 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 323
                S +L  ++    +S S +        L ++
Sbjct: 413 KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 116 PPIETALKAGAIPVLVQCLAFG-----SPDEQLLEAAWCLTNIAAGKQEETKALLP--AL 168
           P +   +     P + + L        + ++ L  A + + N+ A + +  K       L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL 205
             +I      +S   AE     L ++    +E + VL
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSS-KELQGVL 457

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 10/221 (4%)

Query: 196 GEGEEFRNVLLS-QGALPPLARMMLPNKGSTVR-TAAWALSNLIKGPDPKPATELIKVDG 253
           GE E+ ++ L      +PP A           R  A   L++L +  D   A +  ++ G
Sbjct: 2   GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN--AADFCQLSG 59

Query: 254 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL 313
           +   + R+L+     L    A ++   S         ++  G L+ L+  L       + 
Sbjct: 60  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 119

Query: 314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373
           +  L ++  LV    + +         +     +VL++ ++ + + LK ++A++L N+  
Sbjct: 120 VKALFAISCLVREQEAGLL------QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 173

Query: 374 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414
           G  EHK  + S   +  L+ L+ T      + V   L +L 
Sbjct: 174 GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 214

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 37/234 (15%), Positives = 69/234 (29%), Gaps = 17/234 (7%)

Query: 97  QKRVNALRELRRLLSRFEFPPIETA---LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNI 153
           Q+R  AL  L  L        ++ A    +   + +LV              AA  +   
Sbjct: 32  QEREGALELLADLCE-----NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTC 86

Query: 154 AAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGAL 211
           +       + +L   AL  L+  L   +   V  +  +A+  +  E E      L     
Sbjct: 87  SQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 146

Query: 212 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTT 271
             L R M          +A+ L NL+ G         +   G++  ++  ++        
Sbjct: 147 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHP--EHKGTLCSMGMVQQLVALVRTEHSPFHE 204

Query: 272 EVAWVVVYLS-----ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 320
            V   +  L       +       L    +L+   + L      Q  +     L
Sbjct: 205 HVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKL 258

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (132), Expect = 9e-09
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 6/197 (3%)

Query: 119 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLG 176
           +  L   AIP L + L          +AA  +  ++  +      +     +  ++  + 
Sbjct: 11  DAELATRAIPELTKLLNDEDQVVV-NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 69

Query: 177 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 236
             +    A   A  L N++    E    +   G +P L +M+     S +  A   L NL
Sbjct: 70  NTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 128

Query: 237 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 296
           +   +       +   G L  ++  L + + +        +  L+  +  +  +++ SG 
Sbjct: 129 LLHQEGAKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 297 LQLLVERLATSNSLQLL 313
            Q LV  + T    +LL
Sbjct: 187 PQALVNIMRTYTYEKLL 203

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 9e-09
 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 24/158 (15%)

Query: 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPV 183
            GAIP LVQ L     D Q    +   T                       +       +
Sbjct: 396 QGAIPRLVQLLVRAHQDTQR-RTSMGGTQQQF-------------------VEGVRMEEI 435

Query: 184 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK 243
            E C  AL  +A +    R V+     +P   +++     +  R AA  L  L +  +  
Sbjct: 436 VEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494

Query: 244 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 281
              E I+ +G    +   L   +E + T  A V+  +S
Sbjct: 495 ---EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 4e-07
 Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 14/159 (8%)

Query: 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS-PFDI 402
           + I  L K L  E +V+  +AA ++  ++        ++ S + ++ ++  +  +   + 
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 403 KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFM 462
            +  A  L NL               E L+++   G +   + ++ S         +   
Sbjct: 77  ARCTAGTLHNLSHHR-----------EGLLAIFKSGGIPALVKMLGSPVDSVLFYAI--T 123

Query: 463 ELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNM 501
            L    +        V    G+  M       N     +
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 5e-07
 Identities = 65/482 (13%), Positives = 141/482 (29%), Gaps = 65/482 (13%)

Query: 75  MQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL 134
           M++   V  +   +         +       L  L    E   +    K+G IP LV+ L
Sbjct: 55  MRSPQMVSAIVRTMQNTNDVETAR--CTAGTLHNLSHHRE--GLLAIFKSGGIPALVKML 110

Query: 135 AFGSPDEQLLEAAWCL--TNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALG 192
                      A   L    +     +    L   L  ++A L  K++          L 
Sbjct: 111 GSPVDSVL-FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQ 168

Query: 193 NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA------- 245
            +A   +E + ++L+ G    L  +M       +      +  ++               
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 246 ------------------------------TELIKVDGLLDAILRHLKRADEELTTEVAW 275
                                         T+   ++GLL  +++ L   D  + T  A 
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 276 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVL 335
           ++  L+  +     ++ + G ++ LV  +  +   +       ++  L    S      +
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE--DITEPAICALRHLTSRHQEAEM 346

Query: 336 VPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 395
                     + V+VK L         +A   L    A    +   +    A+  L+ LL
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406

Query: 396 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI-------------QEHLVSLVGRGCLSG 442
             +  D ++  +           EG    +++               + + + G   +  
Sbjct: 407 VRAHQDTQRRTSMGGTQQQF--VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL 464

Query: 443 FIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 502
           F+ L+ S      R+    +  + +   + E  + +E E     +       NE +   A
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521

Query: 503 NG 504
             
Sbjct: 522 AA 523

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 42/249 (16%), Positives = 86/249 (34%), Gaps = 20/249 (8%)

Query: 183 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--PNKGSTVRTAAWALSNLI-KG 239
           V    A  L N+     + + ++   G +  L R +L   ++      A  AL +L  + 
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341

Query: 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 299
            + + A   +++   L  +++ L         +    ++   AL     + L + G +  
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 401

Query: 300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGI---------------TDQ 344
           LV+ L  ++                  +   + +++    G                   
Sbjct: 402 LVQLLVRAHQ-DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 460

Query: 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 404
            I + V+ L S    +++ AA VL  +A    E  + I +  A A L  LL +    +  
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQDK-EAAEAIEAEGATAPLTELLHSRNEGVAT 519

Query: 405 EVAYVLGNL 413
             A VL  +
Sbjct: 520 YAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 49/323 (15%), Positives = 107/323 (33%), Gaps = 18/323 (5%)

Query: 80  AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSP 139
           A+ EL   +    +  + K    + +L    S+ E            +  +V+ +   + 
Sbjct: 18  AIPELTKLLNDEDQVVVNKAAVMVHQL----SKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 140 DEQLLEAAWCLTNIAAGKQE-ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 198
            E     A  L N++  ++          +P L+  LG    S V       L N+    
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDS-VLFYAITTLHNLLLHQ 132

Query: 199 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 258
           E  +  +   G L  +  ++       +      L  L  G        +I   G   A+
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK--LIILASGGPQAL 190

Query: 259 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 318
           +  ++    E        V+ + ++ +     +V++G +Q              L    +
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ---------ALGLHLTDPSQ 241

Query: 319 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 378
            L          +SD         + ++  LV+ L S+   +   AA +LSN+   + ++
Sbjct: 242 RLVQNCLWTLRNLSDA-ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

Query: 379 KQLIHSSEALALLLHLLSTSPFD 401
           K ++     +  L+  +  +   
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDR 323

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 32/206 (15%)

Query: 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 226
            LP+++  L   S  P+ +     + N+A         L  QGA+P L ++++     T 
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQ 414

Query: 227 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 286
           R  +   +                V+G+             E   E     +++ A    
Sbjct: 415 RRTSMGGTQQQF------------VEGVRM-----------EEIVEGCTGALHILARDVH 451

Query: 287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 346
              ++     + L V+ L  S    +       L  L     +  ++ +       +   
Sbjct: 452 NRIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQDKEA--AEAIE-----AEGAT 503

Query: 347 AVLVKCLKSEHRVLKKEAAWVLSNIA 372
           A L + L S +  +   AA VL  ++
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRMS 529

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 127 IPVLVQCLAFGSPDEQLLEAA-WCLTNIAAGKQEET-KALLP-ALPLLIAHLGEKSSSPV 183
           +P + + +   +PD +  +AA      I  G +    K L+  A+P LI  + +  S  V
Sbjct: 367 LPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVV 423

Query: 184 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 219
            +  AW +G +    E      ++   L PL + ++
Sbjct: 424 RDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLI 456

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	518
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.62
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.55
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.51
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.28
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.27
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.25
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.24
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.13
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.99
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.9
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.89
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.77
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.71
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.68
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.58
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.49
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.43
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.39
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.34
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.32
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.58
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.57
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.77
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.13
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.02
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.49
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	93.14
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	92.58
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.71
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	80.12

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-67  Score=550.05  Aligned_cols=488  Identities=30%  Similarity=0.487  Sum_probs=408.5

Q ss_pred             ccCcccccccccccC--chH-HhhhHHHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcc-cchHHHHHHHhhhHHH
Q 010080            5 SLNHHKRDPIKSSVG--NVA-AQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDM-MVDEEQSILEMQTSSA   80 (518)
Q Consensus         5 ~~~~~r~~~~k~~~~--~~~-~~rr~~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (518)
                      |.|++|++.||++|+  .++ ||||+++.++|||+|||+.|.|||+.  ....+...++..+. ...... ..   ....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~--~~~~~~~~~~~~~~~~~~~~~-~~---~~~~   74 (503)
T d1wa5b_           1 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNF--IPPTDGADSDEEDESSVSADQ-QF---YSQL   74 (503)
T ss_dssp             CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC---------------------------------
T ss_pred             CCchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCC--Ccccccccccchhccccchhh-HH---HHHH
Confidence            689999999999875  333 56666799999999999999988852  11111111111000 000000 01   1112


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080           81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  160 (518)
Q Consensus        81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~  160 (518)
                      .+.+..+++.++++|.+.++.|+..+|++++.+.+++++.++++|++|.|+++|+.+.++.++.+|+|+|+|++++++..
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            23456666677899999999999999999999999999999999999999999998777788899999999999999988


Q ss_pred             HHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080          161 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK  238 (518)
Q Consensus       161 ~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  238 (518)
                      +..+.  |++|.|+.+|.+ ++.++++.|+|+|+||+++++++|+.+...|++++|+.++.+.+..+.++++|+|+|+|+
T Consensus       155 ~~~~~~~g~i~~l~~lL~s-~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  233 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCChHHHHHHhcC-CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhc
Confidence            88887  799999999987 789999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhh
Q 010080          239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR  318 (518)
Q Consensus       239 ~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~  318 (518)
                      ++.+.+...  ...+++|.|+.++.+.|++++..++|+|.+++.+.++....+++.|+++.++.++ .+++..+..++++
T Consensus       234 ~~~~~~~~~--~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~al~  310 (503)
T d1wa5b_         234 GKKPQPDWS--VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALR  310 (503)
T ss_dssp             CSSSCCCHH--HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHH
T ss_pred             CCccchHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcc-cCCchhhhhhHHH
Confidence            765554433  3569999999999999999999999999999998888889999999999999998 5888899999999


Q ss_pred             hhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC
Q 010080          319 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS  398 (518)
Q Consensus       319 ~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~  398 (518)
                      +++|++.+++.++..+++.      |+++.|..++.++++.++++++|+|+|++++++.++..+++.|+++.+++++.++
T Consensus       311 ~l~nl~~~~~~~~~~~~~~------~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~  384 (503)
T d1wa5b_         311 AVGNIVTGNDLQTQVVINA------GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA  384 (503)
T ss_dssp             HHHHHTTSCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhcc------chHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC
Confidence            9999999988888888765      5999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC--------
Q 010080          399 PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP--------  470 (518)
Q Consensus       399 ~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~--------  470 (518)
                      +++++++|+|+|+|++.+..   ..    .+++.++++.|++++|+++|...|++++..+|++|.+|++.+.        
T Consensus       385 ~~~v~~~a~~~l~nl~~~~~---~~----~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~  457 (503)
T d1wa5b_         385 EYKTKKEACWAISNASSGGL---QR----PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL  457 (503)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT---TC----THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ChhHHHHHHHHHHHHHhccc---cc----HHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999987532   12    2678899999999999999999999999999999999996432        


Q ss_pred             -CCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCC
Q 010080          471 -NHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYG  515 (518)
Q Consensus       471 -~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~  515 (518)
                       .+++...++++||+++|+.||+|+|++||++|..||++||++|+|
T Consensus       458 ~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         458 NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             SSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             cchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence             234567899999999999999999999999999999999988775

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-50  Score=412.20  Aligned_cols=412  Identities=31%  Similarity=0.557  Sum_probs=368.8

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010080           78 SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK  157 (518)
Q Consensus        78 ~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~  157 (518)
                      +++++++.+.+   +|+|++.+..|+..++++++...+++++.++++|++|.|+++|++.+++.++.+|+|+|+|+|+++
T Consensus        12 ~~~i~~lv~~l---~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~   88 (434)
T d1q1sc_          12 NWSVEDIVKGI---NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT   88 (434)
T ss_dssp             SCCHHHHHHHH---TSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC
T ss_pred             hhhHHHHHHHH---cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence            34567777665   599999999999999999999999999999999999999999986655678889999999999999


Q ss_pred             hHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC-----hhHHHHHH
Q 010080          158 QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-----GSTVRTAA  230 (518)
Q Consensus       158 ~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~  230 (518)
                      ++.+..++  |++|.|+.+|.+ ++.++++.|+|+|+|++.+++.+|..+...|++++|+.++...+     ....+.++
T Consensus        89 ~~~~~~i~~~~~i~~l~~~L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (434)
T d1q1sc_          89 SEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  167 (434)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             hhhhhHhhhccchhhhhhcccc-CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHH
Confidence            88888887  799999999987 78999999999999999999999999999999999999998542     45678999


Q ss_pred             HHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCc
Q 010080          231 WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL  310 (518)
Q Consensus       231 ~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~  310 (518)
                      |++++++.+..+....  ....+++|.+..++.++|++++..++|+|++++.++++....+...|+++.++.++ .+++.
T Consensus       168 ~~l~~~~~~~~~~~~~--~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll-~~~~~  244 (434)
T d1q1sc_         168 WTLSNLCRNKNPAPPL--DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATEL  244 (434)
T ss_dssp             HHHHHHTCCCTTCCCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCH
T ss_pred             HHHHHHhhcccccchh--hhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccc-ccchh
Confidence            9999999875443332  23568999999999999999999999999999988777888888999999999998 57889


Q ss_pred             cchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHH
Q 010080          311 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL  390 (518)
Q Consensus       311 ~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~  390 (518)
                      .++.+++++|++++.+++.....+++.      |+++.|..++.++++.++..|+|+|+|++.+.++....+.+.|++|.
T Consensus       245 ~~~~~al~~l~~l~~~~~~~~~~~~~~------~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~  318 (434)
T d1q1sc_         245 PIVTPALRAIGNIVTGTDEQTQKVIDA------GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF  318 (434)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHT------TGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred             hhhhchhhhhhhHHhhhhHHHHHHHhc------cccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHH
Confidence            999999999999999888777777754      59999999999999999999999999999999899999999999999


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080          391 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  470 (518)
Q Consensus       391 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~  470 (518)
                      +++++.+++++++.+|+|+|+|++.+.     +    .+++.++.+.|++++|+++|.++|++++..++++|.+|++.+.
T Consensus       319 li~~l~~~~~~v~~~a~~~l~nl~~~~-----~----~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~  389 (434)
T d1q1sc_         319 LVGVLSKADFKTQKEAAWAITNYTSGG-----T----VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE  389 (434)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHS-----C----HHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccChHHHHHHHHHHHHHHhcC-----C----HHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998753     2    4678889999999999999999999999999999999997543


Q ss_pred             C----CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 010080          471 N----HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  511 (518)
Q Consensus       471 ~----~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~  511 (518)
                      .    ..+...++++||++.|+.|++|+|++|++.|..||++||.
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         390 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             hcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            2    2356789999999999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-32  Score=282.89  Aligned_cols=367  Identities=17%  Similarity=0.254  Sum_probs=314.7

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080          124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  200 (518)
Q Consensus       124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~  200 (518)
                      ...++.+++.+.+++ ...+..|+..+..+.+... ...+.++  |++|.|+.+|.+..+..++..|+|+|+||+..++.
T Consensus        75 ~~~l~~~~~~~~s~~-~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~  153 (503)
T d1wa5b_          75 QQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  153 (503)
T ss_dssp             -CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            345788888887765 5566889999998875432 2345555  79999999998767889999999999999988888


Q ss_pred             hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080          201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  280 (518)
Q Consensus       201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  280 (518)
                      ....+...|+++.++.++.+++.+++..++|+|+||+...  ...++.+...|+++.|+.++.+.++++...++|+|.++
T Consensus       154 ~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~--~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl  231 (503)
T d1wa5b_         154 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL  231 (503)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhh--HHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999542  34556666789999999999999999999999999999


Q ss_pred             hcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhh
Q 010080          281 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL  360 (518)
Q Consensus       281 ~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i  360 (518)
                      +.+...........++++.++.++ .+.+.+++..++++|++++.++++....+++.      |+++.++.++.+++..+
T Consensus       232 ~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~------~~~~~l~~ll~~~~~~v  304 (503)
T d1wa5b_         232 CRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDV------RIPKRLVELLSHESTLV  304 (503)
T ss_dssp             HCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT------TCHHHHHHGGGCSCHHH
T ss_pred             hcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhccCCchhhhhhhhh------hhhhhhhhcccCCchhh
Confidence            986655555566678999999988 57888999999999999998887776777754      59999999999999999


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080          361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  440 (518)
Q Consensus       361 ~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  440 (518)
                      +..|+++++|++.+.+.+...+++.|+++.|..++++++..++++++|+|+|++.+      +    .++...+++.|++
T Consensus       305 ~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~------~----~~~~~~i~~~~~l  374 (503)
T d1wa5b_         305 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG------N----TEQIQAVIDANLI  374 (503)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------C----HHHHHHHHHTTCH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc------c----HHHHHHHHHcccc
Confidence            99999999999999989999999999999999999999999999999999999874      2    3677888999999


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHccCCCCc-chhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          441 SGFIDLVRSADIEAARLGLQFMELVLRGMPNHE-GTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       441 ~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~-~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                      +.++.++...+.++...+.++|.++...+.+.. ....+.+.|+++.|.++....++++...+...|.+.+
T Consensus       375 ~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll  445 (503)
T d1wa5b_         375 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL  445 (503)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             chhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998764422 2345668899999999988889998888777666554

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-32  Score=277.63  Aligned_cols=366  Identities=20%  Similarity=0.312  Sum_probs=312.2

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH-HHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080          124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE-ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  200 (518)
Q Consensus       124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~-~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~  200 (518)
                      .+.|..+++.|.+++ ++.+..|+.++.++.+...+ ..+.++  |++|.|+++|.++++++++..|+|+|+|+|.++++
T Consensus        12 ~~~i~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~   90 (434)
T d1q1sc_          12 NWSVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE   90 (434)
T ss_dssp             SCCHHHHHHHHTSSC-HHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred             hhhHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChh
Confidence            567899999999876 66778999999998754333 244555  79999999998756789999999999999998889


Q ss_pred             hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh-----hHHHHHHH
Q 010080          201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-----ELTTEVAW  275 (518)
Q Consensus       201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-----~v~~~a~~  275 (518)
                      .+..+++.|++|.|+.++.+++..+++.++|+|.|++...  ...+..+...++++.++.++...+.     .....++|
T Consensus        91 ~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~--~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  168 (434)
T d1q1sc_          91 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW  168 (434)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred             hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccc--hHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999643  2345566678999999999986543     45678999


Q ss_pred             HHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc
Q 010080          276 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS  355 (518)
Q Consensus       276 ~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~  355 (518)
                      ++++++.+...........++++.++.++ .+++++++..+++++++++.+++.....+..      .|+++.|+.++.+
T Consensus       169 ~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~------~~~~~~Lv~ll~~  241 (434)
T d1q1sc_         169 TLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVK------KGVVPQLVKLLGA  241 (434)
T ss_dssp             HHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT------TTCHHHHHHHHTC
T ss_pred             HHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhhcccchhhhhhHHHHhh------cccchhccccccc
Confidence            99999987655555556678899999988 5788899999999999999887666555554      3699999999999


Q ss_pred             ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 010080          356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV  435 (518)
Q Consensus       356 ~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~  435 (518)
                      +++.++..|+++|+|++.++++....+++.|+++.|+.+|++.+.++++.|+|+|+|++...          .++...+.
T Consensus       242 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~----------~~~~~~i~  311 (434)
T d1q1sc_         242 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------QDQIQQVV  311 (434)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC----------HHHHHHHH
T ss_pred             chhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcccc----------chhHHHHh
Confidence            99999999999999999999888999999999999999999999999999999999998742          36677888


Q ss_pred             hcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          436 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       436 ~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                      +.|+++.++.++..++++++..++.+|.++...... .....+-+.|+++.|..+...+++++...+...|.+++
T Consensus       312 ~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll  385 (434)
T d1q1sc_         312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF  385 (434)
T ss_dssp             HTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876432 23345668899999999999999999999987777655

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.4e-30  Score=271.28  Aligned_cols=397  Identities=17%  Similarity=0.207  Sum_probs=326.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  163 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~  163 (518)
                      ++.++..++++|++.+..|+..|.++....+ .....+.+.|++|.|+.+|++++ +..+..++++|.+++.++.+....
T Consensus       103 i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~  180 (529)
T d1jdha_         103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhcccc-hhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHHHH
Confidence            4555556679999999999999999655443 34456778999999999998765 667788999999999888777766


Q ss_pred             hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                      +.  |+++.|+.+|..++...+++.+++++.|++. +++.+..+.+.|++++|+.++.+++..+..+++|++.+++....
T Consensus       181 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~  259 (529)
T d1jdha_         181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc
Confidence            66  7899999999876778999999999999998 67889999999999999999999999999999999999986532


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSL  320 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L  320 (518)
                      ...     ...++++.|++++.++|.+++..++++|.+|+.+++.....+.+.|+++.++..+.. ++.+.++.+++.+|
T Consensus       260 ~~~-----~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL  334 (529)
T d1jdha_         260 KQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCS-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chh-----hhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence            211     235899999999999999999999999999998888888888999999999988753 44567788999999


Q ss_pred             hhhhcCCCcc--cceeeccCCCchhhhHHHHHHHhccCh-hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC
Q 010080          321 GNLVAGDSST--ISDVLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST  397 (518)
Q Consensus       321 ~nl~~~~~~~--~~~~i~~G~~~~~~~l~~L~~lL~~~~-~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~  397 (518)
                      +|++......  .+..+.     ..++++.|+.++.+++ ..+++.+++++.|++.. ++....+.+.|+++.|+++|.+
T Consensus       335 ~~l~~~~~~~~~~~~~i~-----~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~  408 (529)
T d1jdha_         335 RHLTSRHQEAEMAQNAVR-----LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR  408 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHH-----HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH
T ss_pred             hcccchhhcchhhhhhHH-----hcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhc
Confidence            9999765432  222221     2468999999997654 46888999999999875 4667789999999999999965


Q ss_pred             CCh----------------------hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHH
Q 010080          398 SPF----------------------DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA  455 (518)
Q Consensus       398 ~~~----------------------~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~  455 (518)
                      .+.                      ++.+.++.++.+++..           ......+.+.|++++|+++|.++++.++
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~-----------~~~r~~~~~~~~i~~Lv~lL~~~~~~v~  477 (529)
T d1jdha_         409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-----------VHNRIVIRGLNTIPLFVQLLYSPIENIQ  477 (529)
T ss_dssp             HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-----------HHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             CCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccC-----------HHHHHHHHHCCCHHHHHHHhCCCCHHHH
Confidence            443                      3455666677777653           2345667789999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080          456 RLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK  508 (518)
Q Consensus       456 ~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~  508 (518)
                      ..++.+|.++...   ...+..+.+.||+..|.+|.+++|+++++.|...|.+
T Consensus       478 ~~a~~aL~~L~~~---~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~  527 (529)
T d1jdha_         478 RVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR  527 (529)
T ss_dssp             HHHHHHHHHHTTS---HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---hhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999998532   2346789999999999999999999999999988865

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-30  Score=269.73  Aligned_cols=391  Identities=16%  Similarity=0.162  Sum_probs=316.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010080           80 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALK-AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ  158 (518)
Q Consensus        80 ~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~-~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~  158 (518)
                      .++.|.+++   +++|...+..|+..+.++...+  +....++. .|++|.|+.+|...++...+..|+++|.+++. ++
T Consensus        18 aip~L~~lL---~~~~~~v~~~A~~~l~~l~~~~--~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~   91 (529)
T d1jdha_          18 AIPELTKLL---NDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR   91 (529)
T ss_dssp             HHHHHHHHH---TCSCHHHHHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SH
T ss_pred             HHHHHHHHH---cCCCHHHHHHHHHHHHHHHhcc--HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cc
Confidence            345555555   5899999999999999965432  33334444 57899999999876666777789999999986 44


Q ss_pred             HHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHh
Q 010080          159 EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL  236 (518)
Q Consensus       159 ~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL  236 (518)
                      +....++  |++|.|+.+|.+ ++++++..|+|+|+|++.+++..+..+.+.|++|+|+.++++++..++..++|+|.++
T Consensus        92 ~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l  170 (529)
T d1jdha_          92 EGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  170 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHCCCHHHHHHHhCC-CCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHH
Confidence            5666666  799999999987 7899999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccC-ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhh
Q 010080          237 IKGPDPKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP  315 (518)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~  315 (518)
                      +...  ......+...++++.|+.++.+. ++.++..+++++.+++. +++....+++.|+++.|+.++ .+++..+...
T Consensus       171 ~~~~--~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~  246 (529)
T d1jdha_         171 AYGN--QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQN  246 (529)
T ss_dssp             HTTC--HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHH
T ss_pred             hhhh--hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHh-cccchhhhhh
Confidence            9763  23444556789999999999754 46789999999999997 456677888999999999988 4788888999


Q ss_pred             hhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh
Q 010080          316 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL  395 (518)
Q Consensus       316 al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL  395 (518)
                      +++++.+++.......   .      ..|+++.|+.++.+++..++..|+++|+|++.++++....+.+.++++.|+.++
T Consensus       247 a~~~l~~ls~~~~~~~---~------~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l  317 (529)
T d1jdha_         247 CLWTLRNLSDAATKQE---G------MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV  317 (529)
T ss_dssp             HHHHHHHHHTTCTTCS---C------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             hhhHHHhccccccchh---h------hhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHH
Confidence            9999999975543221   1      247999999999999999999999999999999989888999999999999998


Q ss_pred             c--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC-HHHHHHHHHHHHHHHccCCCC
Q 010080          396 S--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD-IEAARLGLQFMELVLRGMPNH  472 (518)
Q Consensus       396 ~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d-~~~~~~~l~~l~~il~~~~~~  472 (518)
                      .  +...+++..|+++|.|++....    ..   ......+...|+++.|+.++..++ ..++..++.++.++...   .
T Consensus       318 ~~~~~~~~~~~~a~~aL~~l~~~~~----~~---~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~---~  387 (529)
T d1jdha_         318 LRAGDREDITEPAICALRHLTSRHQ----EA---EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC---P  387 (529)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTSSST----TH---HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS---G
T ss_pred             HhhhcchhHHHHHHHHhhcccchhh----cc---hhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh---h
Confidence            3  4667899999999999987532    10   123345668899999999998755 56778888899988643   2


Q ss_pred             cchhHHHhhchHHHHHHHhcCCCHHHHH
Q 010080          473 EGTKLVEREDGIDAMERFQFHENEDLRN  500 (518)
Q Consensus       473 ~~~~~ie~~ggl~~l~~L~~~~~~~i~~  500 (518)
                      .....+.+.|+++.|..+..+.+.++..
T Consensus       388 ~~~~~l~~~g~i~~L~~lL~~~~~~~~~  415 (529)
T d1jdha_         388 ANHAPLREQGAIPRLVQLLVRAHQDTQR  415 (529)
T ss_dssp             GGHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred             hhhhhhhhcccHHHHHHHHhcCCHHHHH
Confidence            2456678899999998887666554443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-26  Score=232.02  Aligned_cols=364  Identities=13%  Similarity=0.103  Sum_probs=272.0

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080          125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  202 (518)
Q Consensus       125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  202 (518)
                      +.||.||++|++++ +..+..|+++|.|+|.++++.+..+.  |+||.|+.+|.+ +++++++.|+|+|+|++.++++++
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence            47999999999877 66778899999999999888888888  899999999987 799999999999999999899999


Q ss_pred             HHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh----------------ccC
Q 010080          203 NVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL----------------KRA  265 (518)
Q Consensus       203 ~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL----------------~~~  265 (518)
                      ..+.+.|+++.|+.++.+ .+..++..++|+|.+++....  ..... . ..+++.++..+                ...
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE--LKEEL-I-ADALPVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS--THHHH-H-HHHHHHHHHHTTHHHHTCC---------CC
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh--hHHHH-H-hcccHHHHHHHHhhhhhhhcchhhhhcccc
Confidence            999999999999998875 578899999999999997642  22222 2 34445444433                234


Q ss_pred             ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccC-----CCccchhhhhhhhhh---------------hhc
Q 010080          266 DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-----NSLQLLIPVLRSLGN---------------LVA  325 (518)
Q Consensus       266 d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~-----~~~~v~~~al~~L~n---------------l~~  325 (518)
                      +++++..++++|.+++..++.....+...|+++.++.++...     ........+...+.+               +..
T Consensus       156 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  235 (457)
T d1xm9a1         156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY  235 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Confidence            678999999999999986555555555678889998887421     111111111111110               000


Q ss_pred             -----------------------------------CCCcccceeeccCCCchhhhHHHHHHHhcc-ChhhhHHHHHHHHH
Q 010080          326 -----------------------------------GDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLS  369 (518)
Q Consensus       326 -----------------------------------~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-~~~~i~~~a~~~Ls  369 (518)
                                                         .........      ...++++.++.++.. .++.++..++|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~  309 (457)
T d1xm9a1         236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL------YHSDAIRTYLNLMGKSKKDATLEACAGALQ  309 (457)
T ss_dssp             TC----------------------------CCCCCSSCCGGGGG------GSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHH------HhhcHHHHHHHHHhcccchHHHHHHHHHHH
Confidence                                               000000011      234688888888755 45788899999999


Q ss_pred             HhccCCHH-----HHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHH
Q 010080          370 NIAAGSVE-----HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI  444 (518)
Q Consensus       370 nl~~~~~~-----~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~  444 (518)
                      +++.+...     ....+...|++|.|+++|++.+.++++.|+++++|++.++.           . +..+..++++.|+
T Consensus       310 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-----------~-~~~i~~~~i~~li  377 (457)
T d1xm9a1         310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-----------L-HRVMGNQVFPEVT  377 (457)
T ss_dssp             HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-----------G-HHHHHHHTHHHHH
T ss_pred             HHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-----------H-HHHHHHhhHHHHH
Confidence            99876422     22334567999999999999999999999999999987521           1 3344557899999


Q ss_pred             Hhhcc------CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhc-CCCHHHHHHHHHHHHhhcCccC
Q 010080          445 DLVRS------ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF-HENEDLRNMANGLVDKYFGEDY  514 (518)
Q Consensus       445 ~lL~~------~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~-~~~~~i~~~a~~il~~~f~~~~  514 (518)
                      .+|..      .+.+++..++.+|.+++...  ...+..+.+.||++.|.++.. ++++.+++.|..+|.+.|.+.+
T Consensus       378 ~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQ--PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC--THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHhccccCcCCcHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            99864      23568889999999998543  235678889999999999865 5688999999999999997765

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.7e-24  Score=216.37  Aligned_cols=360  Identities=16%  Similarity=0.165  Sum_probs=261.7

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080           82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  161 (518)
Q Consensus        82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~  161 (518)
                      +.+++++   +++|++.+..|+..|.+ ++.+.......+++.|+||.|+++|++++ +..+..|+++|.|++.++++..
T Consensus         5 p~lv~~L---~~~~~~~~~~a~~~l~~-l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           5 PKAVQYL---SSQDEKYQAIGAYYIQH-TCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             HHHHHHH---HSSCTHHHHHHHHHHHH-HTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHh---CCCCHHHHHHHHHHHHH-HHcCCHHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            4455555   59999999999999999 56555556678889999999999998765 6677889999999998888887


Q ss_pred             HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh----------------CCCCh
Q 010080          162 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM----------------LPNKG  223 (518)
Q Consensus       162 ~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll----------------~~~~~  223 (518)
                      ..+.  |+++.|+.++.+..+.+++..|+|+|.+++.+. ..+......| +++++..+                ...+.
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHH-HHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh-hhHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            7777  799999999987788999999999999999854 4455555544 44444333                23367


Q ss_pred             hHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh------hHHHHHHHHHHHhh----------------
Q 010080          224 STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE------ELTTEVAWVVVYLS----------------  281 (518)
Q Consensus       224 ~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~------~v~~~a~~~L~~L~----------------  281 (518)
                      .+++.+++++.+++....  .....+...++++.++.++.+...      .....+...+.+..                
T Consensus       158 ~v~~~a~~~l~~~~~~~~--~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  235 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADA--GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY  235 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHH--HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCch--HHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Confidence            899999999999986532  222333456789999988863211      11111111111100                


Q ss_pred             ----------------------------------cCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080          282 ----------------------------------ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD  327 (518)
Q Consensus       282 ----------------------------------~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  327 (518)
                                                        .........+...++++.++.++....++.+...+.+++.+++...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~  315 (457)
T d1xm9a1         236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK  315 (457)
T ss_dssp             TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred             hhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcc
Confidence                                              0111222333455677788887765667777888899999988665


Q ss_pred             Cccc----ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC-----
Q 010080          328 SSTI----SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS-----  398 (518)
Q Consensus       328 ~~~~----~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~-----  398 (518)
                      ....    +..+.     ..++++.|+.++.++++.++..++++++|++... +....+ ..++++.|+.+|...     
T Consensus       316 ~~~~~~~~~~~~~-----~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~-~~~~~i-~~~~i~~li~~L~~~~~~~~  388 (457)
T d1xm9a1         316 GLMSSGMSQLIGL-----KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LLHRVM-GNQVFPEVTRLLTSHTGNTS  388 (457)
T ss_dssp             SSHHHHHHHHHHT-----TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-GGHHHH-HHHTHHHHHHTTTSCCSCST
T ss_pred             ccchHHHHHHHHH-----HcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh-hHHHHH-HHhhHHHHHHHHhccccCcC
Confidence            4321    11111     3468999999999999999999999999998654 444444 446899999999542     


Q ss_pred             -ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC-CHHHHHHHHHHHHHHHc
Q 010080          399 -PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLR  467 (518)
Q Consensus       399 -~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~~~~~~l~~l~~il~  467 (518)
                       +.+++..|+++|.|++...          .+..+.+++.|+++.|++++.+. ++.+...|..+|.+|..
T Consensus       389 ~~~~v~~~a~~~L~~l~~~~----------~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         389 NSEDILSSACYTVRNLMASQ----------PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             THHHHHHHHHHHHHHHHTTC----------THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             CcHHHHHHHHHHHHHHhcCC----------HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence             3569999999999998742          25678889999999999999875 57889999999999864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.2e-19  Score=167.90  Aligned_cols=197  Identities=17%  Similarity=0.159  Sum_probs=166.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH-HhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQ-CLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALP  169 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~-~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~  169 (518)
                      +.|.+.+..|+..|..+....+  ....+...|++|.++. +|+++ ++.++..|+++|++++.+++.....++  |++|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d--~a~~l~~~gg~~~ll~~ll~s~-~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~  104 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMD--NAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR  104 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            3467788899999999765433  3356788999999987 55554 467778899999999998887777776  7999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080          170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI  249 (518)
Q Consensus       170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i  249 (518)
                      .|+.+|.+.+++.++..|+|+|++++.+++..+..+...|+++.|+.++.+++..++..++|+|.+++.+. + .....+
T Consensus       105 ~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~-~~~~~~  182 (264)
T d1xqra1         105 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-P-EHKGTL  182 (264)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-G-GGHHHH
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhcc-H-HHHHHH
Confidence            99999976578999999999999999999999999999999999999999999999999999999999763 2 334455


Q ss_pred             HhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhc
Q 010080          250 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS  294 (518)
Q Consensus       250 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~  294 (518)
                      ...|++|.|+.+|.+++++++..++|+|.+|+..++.........
T Consensus       183 ~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            678999999999999999999999999999998777666655443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.6e-18  Score=163.82  Aligned_cols=190  Identities=16%  Similarity=0.189  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh
Q 010080          141 EQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM  218 (518)
Q Consensus       141 ~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll  218 (518)
                      +.+..|+.+|.+++.+.+ ....+.  |+++.++..+.++++++++..|+++|++++.+++.++..+...|++|+|+.++
T Consensus        32 ~~~~~Al~~L~~L~~~~d-~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL  110 (264)
T d1xqra1          32 QEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  110 (264)
T ss_dssp             HHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHH-HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHh
Confidence            344568999999996544 444444  89999887444448999999999999999999999999999999999999999


Q ss_pred             CC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCch
Q 010080          219 LP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVL  297 (518)
Q Consensus       219 ~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~  297 (518)
                      .+ .++.+++.++|+|++++++.  ++....+...|+++.|++++.+++++++..++|+|.+++.++++....+.+.|++
T Consensus       111 ~~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         111 DRDACDTVRVKALFAISCLVREQ--EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhccc--hhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            74 57889999999999999774  2344455678999999999999999999999999999998888889999999999


Q ss_pred             HHHHHHHccCCCccchhhhhhhhhhhhcCCCccccee
Q 010080          298 QLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV  334 (518)
Q Consensus       298 ~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~  334 (518)
                      +.|+.+| .+++++++..++++|++++..++.....+
T Consensus       189 ~~L~~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~~~  224 (264)
T d1xqra1         189 QQLVALV-RTEHSPFHEHVLGALCSLVTDFPQGVREC  224 (264)
T ss_dssp             HHHHHHH-TSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999 58899999999999999998776554433

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3e-13  Score=141.70  Aligned_cols=376  Identities=12%  Similarity=0.122  Sum_probs=254.3

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH-HHHHhcCCh
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE-ETKALLPAL  168 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~-~~~~v~~~v  168 (518)
                      .+++.++..+..|+..+..+...-..    ..+...++|.+..+++.++ +.++..|+.++..++...+. ....  ..+
T Consensus       172 l~~D~~~~VR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~~~~~--~i~  244 (588)
T d1b3ua_         172 LCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQEDLEA--LVM  244 (588)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHHHHHH--HTH
T ss_pred             HhccCCHHHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHHHHHH--HHH
Confidence            34578899999999999987765432    2445678888888876544 55555588899988753322 1111  257


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080          169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL  248 (518)
Q Consensus       169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  248 (518)
                      |.+..++.+ ++..|+..++.+|++++..   ..........+|.+..++.+++..++..+++++..++..-....... 
T Consensus       245 ~~l~~~~~D-~~~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~-  319 (588)
T d1b3ua_         245 PTLRQAAED-KSWRVRYMVADKFTELQKA---VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCREN-  319 (588)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHTHHHHHHH---HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHH-
T ss_pred             HHHHHhccc-ccHHHHHHHHHhHHHHHHH---hhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh-
Confidence            888888876 7899999999999998752   22233445678999999999999999999999999987533222111 


Q ss_pred             HHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC--Cchhhh-------------------H---------------HH
Q 010080          249 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL--SNVATS-------------------L---------------LV  292 (518)
Q Consensus       249 i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~-------------------~---------------~~  292 (518)
                      .....++|.+..++.+.+..++..++.++..++..  .....+                   .               -+
T Consensus       320 ~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~  399 (588)
T d1b3ua_         320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL  399 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHH
T ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhh
Confidence            12346677777777776666666665555544321  000000                   0               00


Q ss_pred             hcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhc
Q 010080          293 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA  372 (518)
Q Consensus       293 ~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~  372 (518)
                      ...+++.+...+ .+.++.++..++.+++.++..-...  . +      ...+.+.+..++.++...+|..|+++++.++
T Consensus       400 ~~~ll~~l~~~~-~d~~~~~r~~~~~~l~~l~~~~~~~--~-~------~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~  469 (588)
T d1b3ua_         400 SQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLGVE--F-F------DEKLNSLCMAWLVDHVYAIREAATSNLKKLV  469 (588)
T ss_dssp             HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCGG--G-C------CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHcChH--h-H------HHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence            112333444444 3555566666666666665321110  1 1      2357788888998888999999999999997


Q ss_pred             cC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC
Q 010080          373 AG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD  451 (518)
Q Consensus       373 ~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d  451 (518)
                      .. +++..    ...++|.+..++.+.++.+|..++.++..+....             -.......++|.|..++.++.
T Consensus       470 ~~~~~~~~----~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~-------------~~~~~~~~ilp~ll~~~~D~v  532 (588)
T d1b3ua_         470 EKFGKEWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-------------GQDITTKHMLPTVLRMAGDPV  532 (588)
T ss_dssp             HHHCHHHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-------------HHHHHHHHTHHHHHHGGGCSC
T ss_pred             HHhCcHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc-------------ChHHHHHHHHHHHHHHcCCCC
Confidence            53 22222    2347899999999999999999999998885421             012234458999999999999


Q ss_pred             HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080          452 IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  509 (518)
Q Consensus       452 ~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~  509 (518)
                      +.++..++++|..+....++    ..+ .....+.|+.|+++++.+|+..|.+.++..
T Consensus       533 ~nVR~~a~~~l~~i~~~~~~----~~~-~~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         533 ANVRFNVAKSLQKIGPILDN----STL-QSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHHHHHHHHHGGGSCH----HHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCc----HhH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999765432    111 223456788899999999999999888753

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.2e-13  Score=140.50  Aligned_cols=333  Identities=13%  Similarity=0.088  Sum_probs=230.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhc--CChHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA--GKQEET  161 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~--~~~~~~  161 (518)
                      +..++..+.++|+..++.|++.+..+...- .+  +. ....++|.|.++++.+  ++.+..++..|.++..  +.++. 
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~l-g~--~~-~~~~lip~l~~~~~~~--~ev~~~~~~~l~~~~~~~~~~~~-   84 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALAL-GV--ER-TRSELLPFLTDTIYDE--DEVLLALAEQLGTFTTLVGGPEY-   84 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHS-CH--HH-HHHTHHHHHHHTCCCC--HHHHHHHHHHHTTCSGGGTSGGG-
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-Cc--Hh-hHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHcCChhH-
Confidence            445667778999999999999998853321 12  11 2356899999988643  4566677777777763  22222 


Q ss_pred             HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                        +-..+|.+..++.. ++..|++.|+.+|+.|+...+.   ..+....+|.+..+..++....+..++..+..+.....
T Consensus        85 --~~~ll~~l~~l~~~-~~~~Vr~~a~~~l~~i~~~~~~---~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~  158 (588)
T d1b3ua_          85 --VHCLLPPLESLATV-EETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS  158 (588)
T ss_dssp             --GGGGHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred             --HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh
Confidence              22356777777766 7899999999999999875322   22333445655567777666777778777777764321


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080          242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  321 (518)
Q Consensus       242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~  321 (518)
                          ...  ...+++.+.+++.+.++.++..++.++..++..-..   ......+++.+..++ ++++..++..++.+++
T Consensus       159 ----~~~--~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~  228 (588)
T d1b3ua_         159 ----SAV--KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLA-SDEQDSVRLLAVEACV  228 (588)
T ss_dssp             ----HHH--HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHH-TCSCHHHHTTHHHHHH
T ss_pred             ----HHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHh-cCCchhhHHHHHHHHH
Confidence                122  346788999999999999999999999999874321   122345677777777 5788899999999999


Q ss_pred             hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChh
Q 010080          322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD  401 (518)
Q Consensus       322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~  401 (518)
                      .++..-+....         ...++|.+..++.+.++.+|..++.++++++.....   ......++|.+..++++.+.+
T Consensus       229 ~i~~~~~~~~~---------~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~  296 (588)
T d1b3ua_         229 NIAQLLPQEDL---------EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAE  296 (588)
T ss_dssp             HHHHHSCHHHH---------HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHH
T ss_pred             HhhccCCHHHH---------HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchH
Confidence            98754332211         124788999999999999999999999999753211   123346899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080          402 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ  460 (518)
Q Consensus       402 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~  460 (518)
                      +|..|+.++..++....   ...      .....-..+++.+..++.+.++.+...+..
T Consensus       297 vr~~a~~~l~~~~~~l~---~~~------~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~  346 (588)
T d1b3ua_         297 VRAAASHKVKEFCENLS---ADC------RENVIMSQILPCIKELVSDANQHVKSALAS  346 (588)
T ss_dssp             HHHHHHHHHHHHHHTSC---TTT------HHHHHHHTHHHHHHHHHTCSCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh---hhh------hhhhhHHHHHHHHHHhhcCCChHHHHHHHH
Confidence            99999999999887431   110      011122345666677776666666554433

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.8e-11  Score=131.84  Aligned_cols=354  Identities=15%  Similarity=0.174  Sum_probs=208.8

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHH
Q 010080          127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL  205 (518)
Q Consensus       127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~  205 (518)
                      +|.+.+.+.+++ ...+..|+.+|+.++.+..+.....+ ..+|.++..|.+ +++.||..++|+||.++.........-
T Consensus       397 l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         397 LPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccC-CCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            444555555443 33433488999999988776655555 488999999987 789999999999999875221111111


Q ss_pred             HhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChh-----------------
Q 010080          206 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEE-----------------  268 (518)
Q Consensus       206 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~-----------------  268 (518)
                      .-...++.++..+.++++.++..|+|+|.+++....+.... .+  ..+++.++..+...+..                 
T Consensus       475 ~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p-~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~  551 (888)
T d1qbkb_         475 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP-YL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG  551 (888)
T ss_dssp             HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGG-GH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHG
T ss_pred             hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhh-HH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence            23457888888888889999999999999998642221110 00  11222222221111100                 


Q ss_pred             ----------------------------HHHHHHHHHHHhh---------------------------------------
Q 010080          269 ----------------------------LTTEVAWVVVYLS---------------------------------------  281 (518)
Q Consensus       269 ----------------------------v~~~a~~~L~~L~---------------------------------------  281 (518)
                                                  ....++-+++.++                                       
T Consensus       552 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  631 (888)
T d1qbkb_         552 HHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY  631 (888)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             ccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence                                        0001111111111                                       


Q ss_pred             -------------------cCCchhhh-HHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCc
Q 010080          282 -------------------ALSNVATS-LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGI  341 (518)
Q Consensus       282 -------------------~~~~~~~~-~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~  341 (518)
                                         .+-..... .+....+++.+...+ .+.+..++..++.++|.++..........++     
T Consensus       632 ~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-----  705 (888)
T d1qbkb_         632 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKACFQHVKPCIA-----  705 (888)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-----
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHh-CCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-----
Confidence                               00000000 011112333344444 3567778888999999988766555544443     


Q ss_pred             hhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC--hhHHHHHHHHHHHhcCCCCC
Q 010080          342 TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP--FDIKKEVAYVLGNLCVSPTE  419 (518)
Q Consensus       342 ~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~--~~v~~eA~~aL~nl~~~~~~  419 (518)
                        .+++.+..-|.++...++..|+|+++.|+....+..+..++ .+++.|+.++++++  ..++.+++.+|+.++..   
T Consensus       706 --~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~---  779 (888)
T d1qbkb_         706 --DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYV---  779 (888)
T ss_dssp             --HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH---
T ss_pred             --HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH---
Confidence              58888988898888999999999999998654344433333 37889999998754  45889999999998753   


Q ss_pred             CCCCchhHHHHHHHHHhcCchHHHHHhhcc-CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHH
Q 010080          420 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDL  498 (518)
Q Consensus       420 ~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i  498 (518)
                         .|    +.+...+ ..+++++|.-|.. .|.+-...+..++..+.+..+.........   ..+.+-. -..+.+++
T Consensus       780 ---~p----~~~~~~l-~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~---~~~~i~~-~~~~~~~~  847 (888)
T d1qbkb_         780 ---CP----QEVAPML-QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIF---FCDAVAS-WINPKDDL  847 (888)
T ss_dssp             ---CH----HHHGGGG-GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHH---HHHHHTT-CSSCCHHH
T ss_pred             ---CH----HHHHhhH-HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHHHHHH---HHHHHHh-cCCCCHHH
Confidence               12    1111111 2377888887765 455557778888988886533211111000   0011111 12345677


Q ss_pred             HHHHHHHHHhh
Q 010080          499 RNMANGLVDKY  509 (518)
Q Consensus       499 ~~~a~~il~~~  509 (518)
                      +.....+|..|
T Consensus       848 ~~~~~~~l~~~  858 (888)
T d1qbkb_         848 RDMFCKILHGF  858 (888)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=7e-10  Score=103.37  Aligned_cols=256  Identities=13%  Similarity=0.083  Sum_probs=188.2

Q ss_pred             HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080          123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  202 (518)
Q Consensus       123 ~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  202 (518)
                      +....+.|+++|++++ +.+...|+.+|..+..  +       .++|.|+.++.+ +++.++..|+++|+.+..... ..
T Consensus        17 ~~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~-------~~~~~l~~~l~d-~~~~vr~~a~~aL~~l~~~~~-~~   84 (276)
T d1oyza_          17 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q-------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKK-CE   84 (276)
T ss_dssp             HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H-------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTT-TH
T ss_pred             ccCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H-------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhccccc-cc
Confidence            4566778889998654 6677789999988753  1       247999999987 789999999999999875322 11


Q ss_pred             HHHHhcCChhHHHh-hhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080          203 NVLLSQGALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS  281 (518)
Q Consensus       203 ~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~  281 (518)
                      +.     .++.+.. +++++++.++..++++|.+++.... .      .....++.+...+.+.++.++..+++++..+.
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~  152 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP-I------YSPKIVEQSQITAFDKSTNVRRATAFAISVIN  152 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-G------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc-h------hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence            11     1334444 4567789999999999999986531 1      12367788888888999999998988887654


Q ss_pred             cCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhH
Q 010080          282 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK  361 (518)
Q Consensus       282 ~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~  361 (518)
                      .           ...++.+..++ ...+..+...+..+++++....               ....+.+...+.+.+..++
T Consensus       153 ~-----------~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~  205 (276)
T d1oyza_         153 D-----------KATIPLLINLL-KDPNGDVRNWAAFAININKYDN---------------SDIRDCFVEMLQDKNEEVR  205 (276)
T ss_dssp             -------------CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCC---------------HHHHHHHHHHTTCSCHHHH
T ss_pred             h-----------HHHHHHHHHhc-ccccchhhhhHHHHHHhhhccc---------------cccchhhhhhhhhhhhhhh
Confidence            3           34566777777 4667777777777777765443               2467778888889999999


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchH
Q 010080          362 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS  441 (518)
Q Consensus       362 ~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~  441 (518)
                      ..+.++++.+..           ...+|.|++.+.++  +++..|+++|+.+..                     .++++
T Consensus       206 ~~~~~al~~~~~-----------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~---------------------~~~~~  251 (276)
T d1oyza_         206 IEAIIGLSYRKD-----------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---------------------KTLLP  251 (276)
T ss_dssp             HHHHHHHHHTTC-----------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---------------------GGGHH
T ss_pred             hhhccccchhhh-----------hhhHHHHHHHhCCh--HHHHHHHHHHHHcCC---------------------HHHHH
Confidence            999999987632           23688888888754  589999999998832                     23678


Q ss_pred             HHHHhhcc-CCHHHHHHHHHHHH
Q 010080          442 GFIDLVRS-ADIEAARLGLQFME  463 (518)
Q Consensus       442 ~L~~lL~~-~d~~~~~~~l~~l~  463 (518)
                      .|..+|.. +|.+++..++++|.
T Consensus       252 ~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         252 VLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHHccCCCHHHHHHHHHHHc
Confidence            88888876 57788888887764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7e-10  Score=125.29  Aligned_cols=396  Identities=10%  Similarity=0.109  Sum_probs=255.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  163 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~  163 (518)
                      +.++++.+++.|++.++.|+..|.+.+...... .+.-....+++.|+.+|+.. ++++|..|+.||..++..-++.  .
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~-~~~~~~~~i~~~ll~~L~D~-~~~Vq~~A~k~l~~l~~~~~~~--~   80 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKEY--Q   80 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS-CCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCHH--H
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccc-cChHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCcHh--h
Confidence            556777788999999999999999988754321 11122345889999999754 4778788999999998654332  2


Q ss_pred             hcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh------hhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHh
Q 010080          164 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE------EFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNL  236 (518)
Q Consensus       164 v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~------~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL  236 (518)
                      +...++.|+..+.+ ++..++..+..+|..+...-+      ..... +-...++.+...+.. .+..++..++-+|..+
T Consensus        81 ~~~l~~~L~~~l~~-~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          81 VETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             HHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CchhhhHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            22467788887776 677888888888877643211      11111 111234444544443 4678888888888887


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhh
Q 010080          237 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  316 (518)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~a  316 (518)
                      .....+... ..  ...+++.++..+.+++..++..|+.+|+.++...+..    .-..+++.++..+..+.+..++..+
T Consensus       159 ~~~~g~~l~-~~--~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~  231 (1207)
T d1u6gc_         159 LSRQGGLLV-NF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTY  231 (1207)
T ss_dssp             HHHTCSSCT-TT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HHHhhHhhH-HH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHH
Confidence            754322211 11  2467888888889999999999999999998643321    1124567777767666677788888


Q ss_pred             hhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHH----HHHHHHhC-------
Q 010080          317 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE----HKQLIHSS-------  385 (518)
Q Consensus       317 l~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~----~~~~li~~-------  385 (518)
                      +.+++.++..........+       ..+++.+...+.+.+..+|..++.++..++...+.    +...++..       
T Consensus       232 ~~~l~~l~~~~~~~~~~~l-------~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~  304 (1207)
T d1u6gc_         232 IQCIAAISRQAGHRIGEYL-------EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTY  304 (1207)
T ss_dssp             HHHHHHHHHHSSGGGTTSC-------TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHcchhhHHHH-------HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhc
Confidence            9999999876655444444       36899999999999999999999999988765432    12222110       


Q ss_pred             -------------------------CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080          386 -------------------------EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  440 (518)
Q Consensus       386 -------------------------~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  440 (518)
                                               ...+.......+....+|+.|+.+|..++...      |+    ..... -..++
T Consensus       305 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~------~~----~l~~~-~~~~~  373 (1207)
T d1u6gc_         305 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR------HE----MLPEF-YKTVS  373 (1207)
T ss_dssp             C------------------------------------CTTHHHHHHHHHHHHHHTTC------CT----THHHH-HTTTH
T ss_pred             CcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHH------HH----HHHHH-HHHHH
Confidence                                     00011111123345679999999999987642      21    11222 23578


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHccCCCCc--------------chhHHHh--hchHHHHHHHhcCCCHHHHHHHHH
Q 010080          441 SGFIDLVRSADIEAARLGLQFMELVLRGMPNHE--------------GTKLVER--EDGIDAMERFQFHENEDLRNMANG  504 (518)
Q Consensus       441 ~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~--------------~~~~ie~--~ggl~~l~~L~~~~~~~i~~~a~~  504 (518)
                      +.|+..+...++.++..++.++..++.......              ....+..  ...++.+.....+.+..++..+..
T Consensus       374 ~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~  453 (1207)
T d1u6gc_         374 PALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN  453 (1207)
T ss_dssp             HHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHH
Confidence            999999988889999888888888875432110              0011111  123455666677888888888877


Q ss_pred             HHHhhc
Q 010080          505 LVDKYF  510 (518)
Q Consensus       505 il~~~f  510 (518)
                      ++..+.
T Consensus       454 ~l~~l~  459 (1207)
T d1u6gc_         454 MLTELV  459 (1207)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776553

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=3.5e-09  Score=98.46  Aligned_cols=254  Identities=10%  Similarity=0.045  Sum_probs=184.7

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  246 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  246 (518)
                      ..+.|+.+|.+ +++.|+..|+.+|+.+..  +         .+++.|+.+++++++.++..|+++|..+....  ..  
T Consensus        20 ~~~~L~~~L~d-~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~--~~--   83 (276)
T d1oyza_          20 NDDELFRLLDD-HNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KC--   83 (276)
T ss_dssp             CHHHHHHHTTC-SSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TT--
T ss_pred             CHHHHHHHhcC-CCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--cc--
Confidence            46778899987 899999999999998753  1         24799999999999999999999999986432  11  


Q ss_pred             hHHHhhchHHHHH-HHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080          247 ELIKVDGLLDAIL-RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  325 (518)
Q Consensus       247 ~~i~~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~  325 (518)
                          ....++.+. .+++++++.++..++++|..++........     .+++.+...+ .+.+..++..++.+++.+..
T Consensus        84 ----~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~  153 (276)
T d1oyza_          84 ----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND  153 (276)
T ss_dssp             ----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             ----ccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHh-cCcchHHHHHHHHHHhhcch
Confidence                122334444 456688999999999999999864432222     3456666666 46677788888888887531


Q ss_pred             CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080          326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  405 (518)
Q Consensus       326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e  405 (518)
                                       ...++.+..++...+..++..+.+++.++..+...         ..+.++..+.+.+..++..
T Consensus       154 -----------------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  207 (276)
T d1oyza_         154 -----------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIE  207 (276)
T ss_dssp             ------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHH
T ss_pred             -----------------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhh
Confidence                             13678888899998999999999999998776643         3456777888999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHH
Q 010080          406 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID  485 (518)
Q Consensus       406 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~  485 (518)
                      +.+++..+-.                     ..+++.|++.+.++  .+...+..+|..+   + +         .+.++
T Consensus       208 ~~~al~~~~~---------------------~~~~~~L~~~l~d~--~vr~~a~~aL~~i---g-~---------~~~~~  251 (276)
T d1oyza_         208 AIIGLSYRKD---------------------KRVLSVLCDELKKN--TVYDDIIEAAGEL---G-D---------KTLLP  251 (276)
T ss_dssp             HHHHHHHTTC---------------------GGGHHHHHHHHTSS--SCCHHHHHHHHHH---C-C---------GGGHH
T ss_pred             hccccchhhh---------------------hhhHHHHHHHhCCh--HHHHHHHHHHHHc---C-C---------HHHHH
Confidence            9999987632                     12577888888754  4566677777765   1 1         23456


Q ss_pred             HHHHH-hcCCCHHHHHHHHHHHHh
Q 010080          486 AMERF-QFHENEDLRNMANGLVDK  508 (518)
Q Consensus       486 ~l~~L-~~~~~~~i~~~a~~il~~  508 (518)
                      .|..+ ..+++.+++..|..-|.+
T Consensus       252 ~L~~~l~~~~d~~vr~~A~~~L~k  275 (276)
T d1oyza_         252 VLDTMLYKFDDNEIITSAIDKLKR  275 (276)
T ss_dssp             HHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHHHHccCCCHHHHHHHHHHHcc
Confidence            66554 455678899888877653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.7e-09  Score=102.92  Aligned_cols=388  Identities=12%  Similarity=0.106  Sum_probs=239.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCC-hHHHHHHHHHHHHHhcCChHHHH
Q 010080           84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSP-DEQLLEAAWCLTNIAAGKQEETK  162 (518)
Q Consensus        84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~-~~~~~eA~~~L~nia~~~~~~~~  162 (518)
                      +.+++++..++|.+.+-+|-..|..+...+  +|       +.++.|...|.+++. ...+.-|+-.|.|..........
T Consensus         2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~~--~~-------~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~   72 (458)
T d1ibrb_           2 LITILEKTVSPDRLELEAAQKFLERAAVEN--LP-------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   72 (458)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhcC--ch-------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhh
Confidence            456677778999999999999999966532  21       246677777765443 34444577788877754322211


Q ss_pred             -Hh------c------CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHH
Q 010080          163 -AL------L------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVR  227 (518)
Q Consensus       163 -~v------~------~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~  227 (518)
                       ..      +      ...+.++..+.+ ++. ++..++.+++.++...  ... -.-.+.++.+...+.++  +...+.
T Consensus        73 ~~~~~~~~~l~~~~~~~i~~~ll~~~~~-~~~-~~~~~~~~~~~i~~~~--~~~-~~~~~~~~~l~~~l~~~~~~~~~~~  147 (458)
T d1ibrb_          73 AQYQQRWLAIDANARREVKNYVLQTLGT-ETY-RPSSASQCVAGIACAE--IPV-NQWPELIPQLVANVTNPNSTEHMKE  147 (458)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTC-CCS-SSCSHHHHHHHHHHHH--GGG-TCCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred             hHHhhhhccCCHHHHHHHHHHHHhccCC-CcH-HHHHHHHHHHHHHHHh--CCc-ccCcchhHHHHHHHHhhcchHHHHH
Confidence             11      0      134456666665 333 3344555555554310  000 00124577777777653  567788


Q ss_pred             HHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC--ChhHHHHHHHHHHHhhcCCchhhh-HHHhcCchHHHHHHH
Q 010080          228 TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSNVATS-LLVKSGVLQLLVERL  304 (518)
Q Consensus       228 ~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~~~~Lv~lL  304 (518)
                      .++.++..++....+......  ...+++.++..+.++  +.+++..+++++.++......... ........+.+..++
T Consensus       148 ~~l~~l~~~~~~~~~~~~~~~--~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  225 (458)
T d1ibrb_         148 STLEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT  225 (458)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhccchhhhhh--HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHh
Confidence            899999988864322222111  246788888888754  467999999999998864332221 122223445556655


Q ss_pred             ccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHH----
Q 010080          305 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ----  380 (518)
Q Consensus       305 ~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~----  380 (518)
                       .+++++++..++.+++.++..........+.      ....+.+...+.+.+..++..|+..+..++........    
T Consensus       226 -~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~  298 (458)
T d1ibrb_         226 -QCPDTRVRVAALQNLVKIMSLYYQYMETYMG------PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE  298 (458)
T ss_dssp             -TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT------TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             5778889999999999998665443332222      23455566677788889999999999888642211110    


Q ss_pred             ----------------HHHhCCCHHHHHHHhcC-------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 010080          381 ----------------LIHSSEALALLLHLLST-------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR  437 (518)
Q Consensus       381 ----------------~li~~~~i~~Li~lL~~-------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~  437 (518)
                                      ...-..++|.+.+.+..       .+..++..|..++..++...    +.     +....    
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~----~~-----~~~~~----  365 (458)
T d1ibrb_         299 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC----ED-----DIVPH----  365 (458)
T ss_dssp             TTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT----TT-----THHHH----
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhc----cH-----hhhhH----
Confidence                            00111245556666532       23458888888888887532    11     11222    


Q ss_pred             CchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080          438 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  510 (518)
Q Consensus       438 g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f  510 (518)
                       +++.+.+.+.++++.++..++.+|..+..++........+  ...++.|..+.+++++.|+..|...+.++.
T Consensus       366 -l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         366 -VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             -HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence             4667778888999999999999999887654321111112  234677778889999999999988887653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.4e-09  Score=103.06  Aligned_cols=358  Identities=13%  Similarity=0.135  Sum_probs=215.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHH----------HHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080           94 GAMQKRVNALRELRRLLSRFEFPPIE----------TALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  163 (518)
Q Consensus        94 ~~~~~~~~a~~~lr~lls~~~~~~~~----------~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~  163 (518)
                      .+...+..|...|++.+.........          .-....+.+.+++.+..++.  ....++.++..++.... ....
T Consensus        48 ~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~--~~~~~~~~~~~i~~~~~-~~~~  124 (458)
T d1ibrb_          48 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--RPSSASQCVAGIACAEI-PVNQ  124 (458)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS--SSCSHHHHHHHHHHHHG-GGTC
T ss_pred             CCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcH--HHHHHHHHHHHHHHHhC-Cccc
Confidence            45778888999999988764321111          11234566677777765442  22334555555553110 0001


Q ss_pred             hcCChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCC
Q 010080          164 LLPALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGP  240 (518)
Q Consensus       164 v~~~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~  240 (518)
                      .-+.++.++..+.+ ..+..+++.++.+++.++.........-....+++.+...+.+.  +..++..+++++.++....
T Consensus       125 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~  204 (458)
T d1ibrb_         125 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  204 (458)
T ss_dssp             CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhh
Confidence            11468888887765 24567888999999988753322111111123456677777643  5778999999999998653


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhh
Q 010080          241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL  320 (518)
Q Consensus       241 ~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L  320 (518)
                      ........ ......+.+..++.+++++++..++++|..++..........+.......+...+ .+.+..++..++..+
T Consensus       205 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~a~~~l  282 (458)
T d1ibrb_         205 KANFDKES-ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFW  282 (458)
T ss_dssp             HHHHTSHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHH
T ss_pred             hhhhhhHH-HHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHH
Confidence            21111111 1235677788888899999999999999999875443332222222333344444 466777777888877


Q ss_pred             hhhhcCCCcc------------cceeecc--CCCchhhhHHHHHHHhcc-------ChhhhHHHHHHHHHHhccCCHHHH
Q 010080          321 GNLVAGDSST------------ISDVLVP--GHGITDQVIAVLVKCLKS-------EHRVLKKEAAWVLSNIAAGSVEHK  379 (518)
Q Consensus       321 ~nl~~~~~~~------------~~~~i~~--G~~~~~~~l~~L~~lL~~-------~~~~i~~~a~~~Lsnl~~~~~~~~  379 (518)
                      ..++......            .......  .......+++.+...+..       .+..++..|..++.-++...++..
T Consensus       283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~  362 (458)
T d1ibrb_         283 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI  362 (458)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh
Confidence            7775321000            0000000  000012344455555432       123688888888888875332221


Q ss_pred             HHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHH
Q 010080          380 QLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGL  459 (518)
Q Consensus       380 ~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l  459 (518)
                         +. .+++.+.+.++++++.+|..|+.+|+.++.++....         +.. .-..+++.++.++.++++.++..|+
T Consensus       363 ---~~-~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~---------~~~-~l~~i~~~l~~~l~d~~~~VR~~a~  428 (458)
T d1ibrb_         363 ---VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ---------LKP-LVIQAMPTLIELMKDPSVVVRDTAA  428 (458)
T ss_dssp             ---HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT---------TCT-TTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred             ---hh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhH---------HHH-HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence               11 256778888899999999999999999986532110         010 1135789999999999999999999


Q ss_pred             HHHHHHHccCC
Q 010080          460 QFMELVLRGMP  470 (518)
Q Consensus       460 ~~l~~il~~~~  470 (518)
                      .+|..+.+..+
T Consensus       429 ~~l~~i~~~~~  439 (458)
T d1ibrb_         429 WTVGRICELLP  439 (458)
T ss_dssp             HHHHHHHHHGG
T ss_pred             HHHHHHHHHhh
Confidence            99999987654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.5e-11  Score=133.35  Aligned_cols=316  Identities=13%  Similarity=0.112  Sum_probs=200.1

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH-----Hhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC
Q 010080          125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK-----ALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG  198 (518)
Q Consensus       125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~-----~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~  198 (518)
                      .++|.|++.+.+++.. .+..|+.+|..|+........     ... ..+|.++..+.+ +++.++..|+.+++.+....
T Consensus       126 ell~~L~~~l~s~~~~-~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~-~~~~vr~~al~~l~~~~~~~  203 (888)
T d1qbkb_         126 DLLPKLCSLLDSEDYN-TCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISR  203 (888)
T ss_dssp             TTSTTTTTSSTGGGSS-CSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGGS-SSSCSSSTTTHHHHGGGGCC
T ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhh
Confidence            3677777777654322 223377788888754332221     112 379999999987 67789999999999887654


Q ss_pred             hhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHH
Q 010080          199 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV  278 (518)
Q Consensus       199 ~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~  278 (518)
                      +..-...+ ...++.+..+..+++..++..++.+|..+.... +......  ..++++.++..+.+++++++..|+-.+.
T Consensus       204 ~~~~~~~~-~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~l~~~--l~~i~~~~l~~~~~~~e~v~~~a~ef~~  279 (888)
T d1qbkb_         204 TQALMLHI-DSFTENLFALAGDEEPEVRKNVCRALVMLLEVR-MDRLLPH--MHNIVEYMLQRTQDQDENVALEACEFWL  279 (888)
T ss_dssp             CSTTCSHH-HHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSC-TTTTTTT--TTTTTTTTTTTTTSSCHHHHHHHHHHHC
T ss_pred             hHHHHHHH-HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh-HHHHHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            32211111 236778888888888999999999999887643 2211111  2366677777778888999988887666


Q ss_pred             HhhcCCchhhhHHHhcCchHHHHHHHcc---C------------------------------------------------
Q 010080          279 YLSALSNVATSLLVKSGVLQLLVERLAT---S------------------------------------------------  307 (518)
Q Consensus       279 ~L~~~~~~~~~~~~~~g~~~~Lv~lL~~---~------------------------------------------------  307 (518)
                      .++...  ...... ...++.++..+..   .                                                
T Consensus       280 ~~~e~~--~~~~~~-~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  356 (888)
T d1qbkb_         280 TLAEQP--ICKDVL-VRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEED  356 (888)
T ss_dssp             CCCSGG--GGTTTT-TTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----C
T ss_pred             HHHHhh--hhHHHH-HHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            555321  110000 0111111111100   0                                                


Q ss_pred             ------------CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC
Q 010080          308 ------------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS  375 (518)
Q Consensus       308 ------------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~  375 (518)
                                  ....++..+..+|..++.....   .++       .-+++.+...+.++++..|+.|+.+++.++.|.
T Consensus       357 ~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~---~il-------~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~  426 (888)
T d1qbkb_         357 DDDDEIDDDDTISDWNLRKCSAAALDVLANVYRD---ELL-------PHILPLLKELLFHHEWVVKESGILVLGAIAEGC  426 (888)
T ss_dssp             HHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCS---SSH-------HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTS
T ss_pred             cchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHH---HHH-------HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhH
Confidence                        0011233344444444432211   112       236677777888889999999999999999887


Q ss_pred             HHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHH
Q 010080          376 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA  455 (518)
Q Consensus       376 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~  455 (518)
                      .+.....+. .++|.|+..+.+.++.||..|+|+|+.++....   ..+       ..-.-..+++.++..+.++++.+.
T Consensus       427 ~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~---~~~-------~~~~~~~~l~~ll~~l~d~~~~V~  495 (888)
T d1qbkb_         427 MQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV---SQP-------PDTYLKPLMTELLKRILDSNKRVQ  495 (888)
T ss_dssp             HHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHH---SSC-------HHHHTTTHHHHHHHHHSSSCHHHH
T ss_pred             HHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhh---hhh-------hhhhhhhhHHHHHHHhcCCCHHHH
Confidence            665544433 378899999999999999999999999875310   000       011124578889998989999999


Q ss_pred             HHHHHHHHHHHccCC
Q 010080          456 RLGLQFMELVLRGMP  470 (518)
Q Consensus       456 ~~~l~~l~~il~~~~  470 (518)
                      ..++.+|..+.+...
T Consensus       496 ~~a~~al~~l~~~~~  510 (888)
T d1qbkb_         496 EAACSAFATLEEEAC  510 (888)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987544

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.2e-07  Score=104.39  Aligned_cols=388  Identities=12%  Similarity=0.087  Sum_probs=229.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCCC----CCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHh
Q 010080           89 AYHGKGAMQKRVNALRELRRLLSRFE----FPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL  164 (518)
Q Consensus        89 ~~~~s~~~~~~~~a~~~lr~lls~~~----~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v  164 (518)
                      ..+.+++...+-.+..+|+.++..-.    .......+-..+++.+...+........+.+|+.+|..+.+.........
T Consensus        90 ~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~  169 (1207)
T d1u6gc_          90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF  169 (1207)
T ss_dssp             HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT
T ss_pred             HHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH
Confidence            34556666666667777776654321    12222233344566666666665556677788888888874322111111


Q ss_pred             c-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCC
Q 010080          165 L-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDP  242 (518)
Q Consensus       165 ~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~  242 (518)
                      . ..++.|+..|.+ ++..|+..|+.+|+.++...+.   .. -...++.++..+. +.+...++.++.++..+++... 
T Consensus       170 ~~~il~~l~~~l~~-~~~~vR~~A~~~l~~l~~~~~~---~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~-  243 (1207)
T d1u6gc_         170 HPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-  243 (1207)
T ss_dssp             HHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHCCH---HH-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc-
Confidence            1 367778888877 7889999999999999864332   11 1234666665554 4566677788889999987532 


Q ss_pred             CchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc-----------------
Q 010080          243 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA-----------------  305 (518)
Q Consensus       243 ~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~-----------------  305 (518)
                      ......  ...++|.+.+.+..++++++..++.++..++...+....... ..+++.+...+.                 
T Consensus       244 ~~~~~~--l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~~~  320 (1207)
T d1u6gc_         244 HRIGEY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAM  320 (1207)
T ss_dssp             GGGTTS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC---------------
T ss_pred             hhhHHH--HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHhhh
Confidence            211111  357899999999999999999999988888764332211110 000111100000                 


Q ss_pred             -------------------cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHH
Q 010080          306 -------------------TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW  366 (518)
Q Consensus       306 -------------------~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~  366 (518)
                                         ...+..++..++.+|+.++...++.......       .+++.++..+.+.++.+|..+..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~-------~~~~~L~~~l~d~~~~vr~~~~~  393 (1207)
T d1u6gc_         321 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-------TVSPALISRFKEREENVKADVFH  393 (1207)
T ss_dssp             ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-------TTHHHHHSTTSCSSSHHHHHHHH
T ss_pred             hhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHhcCCchHHHHHHHH
Confidence                               1234456778899999988766554444432       58899999998888999999998


Q ss_pred             HHHHhccCCH---H-------------HHHHHHh--CCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 010080          367 VLSNIAAGSV---E-------------HKQLIHS--SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ  428 (518)
Q Consensus       367 ~Lsnl~~~~~---~-------------~~~~li~--~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~  428 (518)
                      +++.+.....   .             ....+.+  ..+++.+...+.+.+..++..+..++..++....   +.-   .
T Consensus       394 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~---~~l---~  467 (1207)
T d1u6gc_         394 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP---GAL---T  467 (1207)
T ss_dssp             HHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST---TTT---G
T ss_pred             HHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcc---hHH---H
Confidence            8887753100   0             0011111  2356777888888999999999999998875421   110   1


Q ss_pred             HHHHHHHhcCchHHHHHhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHH
Q 010080          429 EHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL  505 (518)
Q Consensus       429 ~~~~~l~~~g~i~~L~~lL~~--~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~i  505 (518)
                      +++..     +++.++..+..  ....+...++.++..++...........+  ..-.+.+.....+++..+...|...
T Consensus       468 ~~l~~-----~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~  539 (1207)
T d1u6gc_         468 QHIPV-----LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALVPPVVACVGDPFYKITSEALLV  539 (1207)
T ss_dssp             GGHHH-----HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HhhHh-----hHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHH--HhhhhhHHHHHccccHHHHHHHHHH
Confidence            12222     35666666654  34566777888888888654321111111  1122334444455555555554433

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=1.2e-06  Score=93.81  Aligned_cols=347  Identities=11%  Similarity=0.066  Sum_probs=205.3

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCC---CCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080           87 AVAYHGKGAMQKRVNALRELRRLLSRF---EFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  163 (518)
Q Consensus        87 ~l~~~~s~~~~~~~~a~~~lr~lls~~---~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~  163 (518)
                      +++.+.++++..+..+...+..+...+   ...|       .++|.|++.+.++++...+..|+.+|..++.........
T Consensus       100 ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp-------eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1         100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWP-------ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-------HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchH-------HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            344667788888888778777765432   1121       256778888877665555556889999988543333223


Q ss_pred             hc----CChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhH-HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhh
Q 010080          164 LL----PALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFR-NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI  237 (518)
Q Consensus       164 v~----~~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r-~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~  237 (518)
                      +.    ..++.++..+.+ ..+..++..|+.+++++.......- ........++.+...+++++..++..+..++..++
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~  252 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIM  252 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            33    234445554433 3568999999999999876432211 11122335667778888899999999999999998


Q ss_pred             cCCCCCchhhHHHhhchHHH-HHHHhccCChhHHHHHHHHHHHhhcCCchhhhHH----------------HhcCchHHH
Q 010080          238 KGPDPKPATELIKVDGLLDA-ILRHLKRADEELTTEVAWVVVYLSALSNVATSLL----------------VKSGVLQLL  300 (518)
Q Consensus       238 ~~~~~~~~~~~i~~~~~l~~-L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~----------------~~~g~~~~L  300 (518)
                      ... +......+  ...+.. +.....+.+++++..++-.+..++..........                .-..+++.+
T Consensus       253 ~~~-~~~~~~~l--~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l  329 (861)
T d2bpta1         253 SKY-YTFMKPYM--EQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL  329 (861)
T ss_dssp             HHH-GGGCHHHH--HHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHH--HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            642 11111111  122332 3344557778888887777766654211111000                011234444


Q ss_pred             HHHHccC------CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080          301 VERLATS------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  374 (518)
Q Consensus       301 v~lL~~~------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~  374 (518)
                      ...+...      .+......+..++..++......   ++       .-+++.+...+.+.++..+..++.+++.++.+
T Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~  399 (861)
T d2bpta1         330 LNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL-------EPVLEFVEQNITADNWRNREAAVMAFGSIMDG  399 (861)
T ss_dssp             HHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-------HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh---hh-------hhhcchhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            5544311      11223445555666555433221   11       12455666677788889999999999999876


Q ss_pred             CH-HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchH----HHHHhhcc
Q 010080          375 SV-EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS----GFIDLVRS  449 (518)
Q Consensus       375 ~~-~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~----~L~~lL~~  449 (518)
                      .. ......++ .+++.++..+.+.++.+|..|+|+++.++....             ..+.....++    .+...+ .
T Consensus       400 ~~~~~~~~~l~-~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-------------~~~~~~~~~~~ll~~l~~~~-~  464 (861)
T d2bpta1         400 PDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVA-------------ESIDPQQHLPGVVQACLIGL-Q  464 (861)
T ss_dssp             SCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG-------------GGSCTTTTHHHHHHHHHHHH-T
T ss_pred             cchhhHHHHHH-HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhc-------------hhhhhHHhhhhhhHHHHhcc-c
Confidence            43 33333333 378999999999999999999999999865310             0011112233    333333 3


Q ss_pred             CCHHHHHHHHHHHHHHHcc
Q 010080          450 ADIEAARLGLQFMELVLRG  468 (518)
Q Consensus       450 ~d~~~~~~~l~~l~~il~~  468 (518)
                      .++.+...+..++..++..
T Consensus       465 ~~~~~~~~~~~~~~~l~~~  483 (861)
T d2bpta1         465 DHPKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHH
Confidence            5677777777777777654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=2.4e-06  Score=91.42  Aligned_cols=386  Identities=12%  Similarity=0.110  Sum_probs=229.1

Q ss_pred             HHHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCC-hHHHHHHHHHHHHHhcCChH
Q 010080           82 EELKSAVAY-HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSP-DEQLLEAAWCLTNIAAGKQE  159 (518)
Q Consensus        82 ~~l~~~l~~-~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~-~~~~~eA~~~L~nia~~~~~  159 (518)
                      +++.+.|+. +.|+|++.+.+|-..|.++...  ++       .+.++.|.+.+...+. ...+.-|+-.|.|.......
T Consensus         4 ~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~--~~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~   74 (861)
T d2bpta1           4 AEFAQLLENSILSPDQNIRLTSETQLKKLSND--NF-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDS   74 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH--CH-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--Cc-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccc
Confidence            445555543 4689999999999999885432  11       2356778888875443 34445578888887644322


Q ss_pred             HHHH--------hc------CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcC----ChhHHHhhhCCC
Q 010080          160 ETKA--------LL------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG----ALPPLARMMLPN  221 (518)
Q Consensus       160 ~~~~--------v~------~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g----~i~~L~~ll~~~  221 (518)
                      ....        .+      ..-..++..|.+ ++..++.+++.+++.|+...       ...+    .++.|+..+.++
T Consensus        75 ~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~i~~~~-------~p~~~wpeli~~L~~~~~s~  146 (861)
T d2bpta1          75 VKTQQFAQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIE-------LPHGAWPELMKIMVDNTGAE  146 (861)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHH-------GGGTCCHHHHHHHHHHTSTT
T ss_pred             hhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHh-------CCcCchHHHHHHHHHHhcCC
Confidence            1110        01      023456667766 68999999999999987411       1122    356666666655


Q ss_pred             -ChhHHHHHHHHHHHhhcCCCCCchhhHH-HhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcCCchhhh-HHHhcCc
Q 010080          222 -KGSTVRTAAWALSNLIKGPDPKPATELI-KVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATS-LLVKSGV  296 (518)
Q Consensus       222 -~~~~~~~a~~~L~nL~~~~~~~~~~~~i-~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~  296 (518)
                       ...++..++.+|..+|....+... ..+ .....++.+.+.+.  ..+..++..++.++.++...-..... ......+
T Consensus       147 ~~~~~~~~al~~l~~i~e~~~~~~~-~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~  225 (861)
T d2bpta1         147 QPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYL  225 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHH
Confidence             456777889999999965432211 111 11244555555554  34468899999999988764332221 1112334


Q ss_pred             hHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHH-HHHHHhccChhhhHHHHHHHHHHhccCC
Q 010080          297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIA-VLVKCLKSEHRVLKKEAAWVLSNIAAGS  375 (518)
Q Consensus       297 ~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~-~L~~lL~~~~~~i~~~a~~~Lsnl~~~~  375 (518)
                      ++.+...+ .+++++++..++.++..++..........+.       .++. .+.....+.++.++..++-.+..++...
T Consensus       226 ~~~l~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-------~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~  297 (861)
T d2bpta1         226 MQVVCEAT-QAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-------QALYALTIATMKSPNDKVASMTVEFWSTICEEE  297 (861)
T ss_dssp             HHHHHHHH-TCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-------HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence            56666766 5788889999999999998654333222111       1222 3344456677889999888887775432


Q ss_pred             HHHHHHHHh----------------CCCHHHHHHHhcCC-------ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 010080          376 VEHKQLIHS----------------SEALALLLHLLSTS-------PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV  432 (518)
Q Consensus       376 ~~~~~~li~----------------~~~i~~Li~lL~~~-------~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~  432 (518)
                      .........                ..++|.+...+...       +...+..+..++..++...      +.   +...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~---~~~~  368 (861)
T d2bpta1         298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC------GN---HILE  368 (861)
T ss_dssp             HHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH------GG---GGHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhc------ch---hhhh
Confidence            111111110                12456666666432       3457777777777765421      00   0011


Q ss_pred             HHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080          433 SLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  509 (518)
Q Consensus       433 ~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~  509 (518)
                      .     .++.+...+.+.+......++.++..+............+.  ..++.+..+..++++.++..|...+.++
T Consensus       369 ~-----~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~--~~l~~l~~~l~d~~~~vr~~a~~~l~~l  438 (861)
T d2bpta1         369 P-----VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRI  438 (861)
T ss_dssp             H-----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             h-----hcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHH--HHHHHHHHHhcCcchhhhhHHHHHHHHH
Confidence            1     23344556677888888888888888865432111111122  2456677778899999999888776654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.9e-06  Score=91.07  Aligned_cols=392  Identities=12%  Similarity=0.134  Sum_probs=227.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCC----------cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080           93 KGAMQKRVNALRELRRLLSRFEFP----------PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK  162 (518)
Q Consensus        93 s~~~~~~~~a~~~lr~lls~~~~~----------~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~  162 (518)
                      +.+...+..|...|++.+......          .+..-.+..+...+++.|.+++.  ....++.++..++.... ...
T Consensus        48 ~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~--~~~~~a~~i~~i~~~~~-p~~  124 (876)
T d1qgra_          48 GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY--RPSSASQCVAGIACAEI-PVN  124 (876)
T ss_dssp             TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS--SSCHHHHHHHHHHHHHG-GGT
T ss_pred             CCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHC-Ccc
Confidence            346778889999999988654211          01112234455677888876542  33457788888874210 001


Q ss_pred             HhcCChHHHHHhhcCC-CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcC
Q 010080          163 ALLPALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKG  239 (518)
Q Consensus       163 ~v~~~v~~Lv~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~  239 (518)
                      ..-+.+|.|+..+.++ ....+++.++.+|+.++.+...-...-....+++.++..+.++  +..++..++.++.++...
T Consensus       125 ~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~  204 (876)
T d1qgra_         125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHH
Confidence            1124688888888653 3467899999999999753211111111123567777777644  567888899988887654


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhh
Q 010080          240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS  319 (518)
Q Consensus       240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~  319 (518)
                      ..+...... ...-+++.+...+.+++++++..++.+|..++....+.....+...+.+.+...+ .+...++...++..
T Consensus       205 ~~~~~~~~~-~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~  282 (876)
T d1qgra_         205 TKANFDKES-ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEF  282 (876)
T ss_dssp             CHHHHTSHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHH
T ss_pred             hhhhhhHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHH
Confidence            211111111 1223566777778889999999999999999875554444333344445555555 45666666677766


Q ss_pred             hhhhhcCCCc----------------ccceeeccCCCchhhhHHHHHHHhccC-------hhhhHHHHHHHHHHhccCCH
Q 010080          320 LGNLVAGDSS----------------TISDVLVPGHGITDQVIAVLVKCLKSE-------HRVLKKEAAWVLSNIAAGSV  376 (518)
Q Consensus       320 L~nl~~~~~~----------------~~~~~i~~G~~~~~~~l~~L~~lL~~~-------~~~i~~~a~~~Lsnl~~~~~  376 (518)
                      +..++.....                .....+..  .....+++.+...+...       ...++..|..++..++....
T Consensus       283 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~  360 (876)
T d1qgra_         283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK--GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE  360 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHH--HHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHH--HHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhh
Confidence            6655432100                00000000  00123445555554322       23578888888877764322


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHH
Q 010080          377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR  456 (518)
Q Consensus       377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~  456 (518)
                      ..   ++. -+++.+.+.+.+.+...+..++++++.+....     .+    ..... .-..+++.++..+.++++.+..
T Consensus       361 ~~---~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~-----~~----~~~~~-~~~~~~~~l~~~l~d~~~~vr~  426 (876)
T d1qgra_         361 DD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP-----EP----SQLKP-LVIQAMPTLIELMKDPSVVVRD  426 (876)
T ss_dssp             GG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-----CH----HHHHH-HHHHHHHHHHHHHTCSSHHHHH
T ss_pred             hh---hhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhh-----hH----HHHHH-HHHHHHHHHHHhhcCCccHHHH
Confidence            21   111 14556666778889999999999999987642     11    22221 1224678899999999999999


Q ss_pred             HHHHHHHHHHccCCCCcc-hhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080          457 LGLQFMELVLRGMPNHEG-TKLVEREDGIDAMERFQFHENEDLRNMANGLVDK  508 (518)
Q Consensus       457 ~~l~~l~~il~~~~~~~~-~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~  508 (518)
                      .++.++..+.+..+.... ...+..  .++.+... .++++.+...+...+..
T Consensus       427 ~a~~~l~~~~~~~~~~~~~~~~~~~--~~~~l~~~-l~~~~~v~~~~~~~l~~  476 (876)
T d1qgra_         427 TAAWTVGRICELLPEAAINDVYLAP--LLQCLIEG-LSAEPRVASNVCWAFSS  476 (876)
T ss_dssp             HHHHHHHHHHHHCGGGTSSTTTHHH--HHHHHHHH-TTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcchhhhhHHHhhh--HHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence            999999999875432111 111111  12223222 23567777776655543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.6e-06  Score=89.44  Aligned_cols=320  Identities=12%  Similarity=0.060  Sum_probs=192.9

Q ss_pred             CCHHHHHHHhcCCCC-hHHHHHHHHHHHHHhcC-ChHHHHHhc-CChHHHHHhhcCC-CCHHHHHHHHHHHHhhhCCChh
Q 010080          125 GAIPVLVQCLAFGSP-DEQLLEAAWCLTNIAAG-KQEETKALL-PALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEE  200 (518)
Q Consensus       125 g~ip~Lv~~L~~~~~-~~~~~eA~~~L~nia~~-~~~~~~~v~-~~v~~Lv~lL~~~-~~~~v~~~a~~~L~nla~d~~~  200 (518)
                      +++|.|++.+.+++. ...+..++.+|..++.. .++...... ..++.++..+.+. ++.+++..|+.++.+.......
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            578999998876543 33444578888888743 223322223 4788888888653 4578999999999887653221


Q ss_pred             hHH-HHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHH
Q 010080          201 FRN-VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVY  279 (518)
Q Consensus       201 ~r~-~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~  279 (518)
                      .-. .....-+++.+...+++++..++..++.+|..++... +......+ ...+.+.+...+.+.++++...++..+..
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  285 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY-YQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSN  285 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-GGGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-HHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            110 1111123556667777889999999999999998653 22222222 23455666677777888887777766666


Q ss_pred             hhcCCchhh--------------------hHHHhcCchHHHHHHHcc------CCCccchhhhhhhhhhhhcCCCcccce
Q 010080          280 LSALSNVAT--------------------SLLVKSGVLQLLVERLAT------SNSLQLLIPVLRSLGNLVAGDSSTISD  333 (518)
Q Consensus       280 L~~~~~~~~--------------------~~~~~~g~~~~Lv~lL~~------~~~~~v~~~al~~L~nl~~~~~~~~~~  333 (518)
                      ++.......                    .......+++.+...+..      ..+..++..+..++..++......   
T Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---  362 (876)
T d1qgra_         286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---
T ss_pred             HHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---
Confidence            653111000                    000111223333333321      112234555666666665432211   


Q ss_pred             eeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC-HHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHH
Q 010080          334 VLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGN  412 (518)
Q Consensus       334 ~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~-~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~n  412 (518)
                      ++       ..+++.+...+.+.++..+..++++++.+..+. .......+. .+++.+...+.++++.++..|+|+++.
T Consensus       363 ~~-------~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~~~vr~~a~~~l~~  434 (876)
T d1qgra_         363 IV-------PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGR  434 (876)
T ss_dssp             GH-------HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             hh-------hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            12       236677777888888999999999999998764 444444433 378999999999999999999999999


Q ss_pred             hcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHc
Q 010080          413 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR  467 (518)
Q Consensus       413 l~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~  467 (518)
                      ++.........+    .+..     .+++.+...+. .++.+...++.++..+..
T Consensus       435 ~~~~~~~~~~~~----~~~~-----~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         435 ICELLPEAAIND----VYLA-----PLLQCLIEGLS-AEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHCGGGTSST----TTHH-----HHHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcchhhhhH----HHhh-----hHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence            875321000000    0111     13444555553 467777777777777764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.43  E-value=1.2e-07  Score=75.10  Aligned_cols=108  Identities=18%  Similarity=0.257  Sum_probs=88.4

Q ss_pred             cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhC
Q 010080          306 TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS  385 (518)
Q Consensus       306 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~  385 (518)
                      +++++.++..|+++|+.+.  +                ..++.|+..|.++++.+|..|+|+|+++..  +         
T Consensus         2 ~D~~~~VR~~A~~aL~~~~--~----------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------   52 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG--D----------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------   52 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS--S----------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------
T ss_pred             CCcCHHHHHHHHHHHHHhC--H----------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------
Confidence            3678889999999998752  1                256788899999999999999999998742  2         


Q ss_pred             CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHH
Q 010080          386 EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME  463 (518)
Q Consensus       386 ~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~  463 (518)
                      +.+|.|+.+|++.++.||..|+++|+.+..        +             ++++.|..++.++++.+...++.+|.
T Consensus        53 ~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--------~-------------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          53 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------E-------------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------H-------------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhHHHHHhhhccchhHHHHHHHHHHHHhCc--------c-------------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            257889999999999999999999999832        1             24677888999999999998888764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.39  E-value=3.9e-08  Score=78.18  Aligned_cols=111  Identities=20%  Similarity=0.252  Sum_probs=90.7

Q ss_pred             hccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 010080          353 LKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV  432 (518)
Q Consensus       353 L~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~  432 (518)
                      |.++++.||..|+++|+.+.  .          ..++.|+..|.++++.+|..|+++|+++..        +        
T Consensus         1 L~D~~~~VR~~A~~aL~~~~--~----------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~--------   52 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG--D----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------E--------   52 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS--S----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H--------
T ss_pred             CCCcCHHHHHHHHHHHHHhC--H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------h--------
Confidence            45677888999999987652  1          357889999999999999999999998743        1        


Q ss_pred             HHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080          433 SLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  509 (518)
Q Consensus       433 ~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~  509 (518)
                           +.++.|..+|.++|+.+...++++|..+-             ..+.++.|..+..++++.++..|...|++|
T Consensus        53 -----~~~~~L~~~l~d~~~~VR~~a~~aL~~i~-------------~~~~~~~L~~ll~d~~~~vr~~A~~aL~th  111 (111)
T d1te4a_          53 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIG-------------GERVRAAMEKLAETGTGFARKVAVNYLETH  111 (111)
T ss_dssp             -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHC-------------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----hhHHHHHhhhccchhHHHHHHHHHHHHhC-------------ccchHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence                 14688999999999999999999998771             123467788899999999999999999876

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=4.4e-05  Score=74.17  Aligned_cols=332  Identities=11%  Similarity=0.090  Sum_probs=191.0

Q ss_pred             ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH---HHHHhcC--ChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080          167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR---NVLLSQG--ALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  241 (518)
Q Consensus       167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r---~~~~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  241 (518)
                      ++..++.+|...+++++.+..+-.+.-+..+.+...   .......  .-+++..++..++.-....+...++.++....
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~  154 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  154 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccc
Confidence            567777777776677777777777766665443211   1121212  12344555555566566667777777765432


Q ss_pred             CCchhhHHH-hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHH--hcCchHHHHHHHcc---C--------
Q 010080          242 PKPATELIK-VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV--KSGVLQLLVERLAT---S--------  307 (518)
Q Consensus       242 ~~~~~~~i~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~--~~g~~~~Lv~lL~~---~--------  307 (518)
                       .. .+... .......+..+...++.+....+..++..+.. .+++.+.+.  +...++.+++.|..   .        
T Consensus       155 -~~-~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~  231 (477)
T d1ho8a_         155 -HN-VKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  231 (477)
T ss_dssp             -CC-HHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             -cc-cchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhc
Confidence             21 22111 11222333344457777877778888888886 444555543  23345555555531   1        


Q ss_pred             -----CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCH----H
Q 010080          308 -----NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSV----E  377 (518)
Q Consensus       308 -----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~----~  377 (518)
                           .+.+++-.++-|+.-++... .....+...    ..+.++.|+.++. +.+.++.+-++.++-|+.....    .
T Consensus       232 ~~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~----~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~  306 (477)
T d1ho8a_         232 TNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQK----YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK  306 (477)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTT----SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHHh----hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence                 11233445666777666433 222223221    1246888888884 4567888999999999986421    1


Q ss_pred             -HHHHHHhCCCHHHHHHHhc--CCChhHHHHHHHHHHHhcC----CCC---------CCC---CCchhH-----HHHHHH
Q 010080          378 -HKQLIHSSEALALLLHLLS--TSPFDIKKEVAYVLGNLCV----SPT---------EGE---GKPKLI-----QEHLVS  433 (518)
Q Consensus       378 -~~~~li~~~~i~~Li~lL~--~~~~~v~~eA~~aL~nl~~----~~~---------~~~---~~~~~~-----~~~~~~  433 (518)
                       ....++..++++.+-.+..  -.|+++....-. |.....    .-+         .+|   =+|-+.     .+++..
T Consensus       307 ~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~-L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~k  385 (477)
T d1ho8a_         307 VIKQLLLLGNALPTVQSLSERKYSDEELRQDISN-LKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE  385 (477)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHH-HHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGG
T ss_pred             HHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHH-HHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHh
Confidence             2334556666665544442  256665543222 211111    000         000   011100     011111


Q ss_pred             HHhc--CchHHHHHhhc----------cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHH
Q 010080          434 LVGR--GCLSGFIDLVR----------SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNM  501 (518)
Q Consensus       434 l~~~--g~i~~L~~lL~----------~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~  501 (518)
                      +-+.  .+++.|+++|.          +.|+.++.+|+-=|....+..|.  ++..+++.||-+.+-+|..|+|++|+..
T Consensus       386 f~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~--gr~il~~lg~K~~vM~Lm~h~d~~Vr~e  463 (477)
T d1ho8a_         386 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLNHSDSRVKYE  463 (477)
T ss_dssp             GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTSCSSHHHHHH
T ss_pred             hcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc--hhHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence            1111  35899999996          45788899998889999998876  5788999999999999999999999999


Q ss_pred             HHHHHHhh
Q 010080          502 ANGLVDKY  509 (518)
Q Consensus       502 a~~il~~~  509 (518)
                      |..-+.+.
T Consensus       464 AL~avQkl  471 (477)
T d1ho8a_         464 ALKATQAI  471 (477)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            86655543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=0.00015  Score=70.37  Aligned_cols=296  Identities=13%  Similarity=0.073  Sum_probs=176.8

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHH---HHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-
Q 010080           90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPV---LVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-  165 (518)
Q Consensus        90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~---Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-  165 (518)
                      .++++|.-....+...+..+.+..... .. ..  +.++.   +...|........+.-|+.++..+... ++.+..+. 
T Consensus       130 ~l~~~d~~~~~~s~~i~~ll~~~~~~~-~~-~~--e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~  204 (477)
T d1ho8a_         130 SLKGDFQTVLISGFNVVSLLVQNGLHN-VK-LV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWL  204 (477)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHTSTTTCC-HH-HH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHT
T ss_pred             hccCchhHHHHHHHHHHHHHHhccccc-cc-hH--HHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHHHH
Confidence            345566656666666666655544322 11 11  12222   222232333344555577888877754 34454443 


Q ss_pred             ---CChHHHHHhhcC----------------CCCHHHHHHHHHHHHhhhCCChhhHHHHHhc--CChhHHHhhhC-CCCh
Q 010080          166 ---PALPLLIAHLGE----------------KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMML-PNKG  223 (518)
Q Consensus       166 ---~~v~~Lv~lL~~----------------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~ll~-~~~~  223 (518)
                         ..++.|+..|..                ..+.+++.+++.|+.-++. +++....+...  +.++.|+.+++ +...
T Consensus       205 ~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KE  283 (477)
T d1ho8a_         205 HEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKE  283 (477)
T ss_dssp             THHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSH
T ss_pred             cccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence               145555555521                1246889999999999998 56677777665  34888888887 5689


Q ss_pred             hHHHHHHHHHHHhhcCCCCCc---hhhHHHhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcC------CchhhhHHH
Q 010080          224 STVRTAAWALSNLIKGPDPKP---ATELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSAL------SNVATSLLV  292 (518)
Q Consensus       224 ~~~~~a~~~L~nL~~~~~~~~---~~~~i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~------~~~~~~~~~  292 (518)
                      .+.|.++.+|.|++.......   ....+...++++.+-.+..  ..|+++..+.-..-..|-..      -+++..++ 
T Consensus       284 KvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev-  362 (477)
T d1ho8a_         284 KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAEL-  362 (477)
T ss_dssp             HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH-
Confidence            999999999999996532211   1223334566666544443  46777766654332222210      11111111 


Q ss_pred             hcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc----------cChhhhHH
Q 010080          293 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK----------SEHRVLKK  362 (518)
Q Consensus       293 ~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~----------~~~~~i~~  362 (518)
                      .+|-       |.  =+|.-..+..| --|.....++            +-.++..|+.+|.          +.++.+..
T Consensus       363 ~Sg~-------L~--WSP~H~se~FW-~EN~~kf~e~------------~~~llk~L~~lL~~~~~~~~~~~s~D~~~lA  420 (477)
T d1ho8a_         363 DSKL-------LC--WSPPHVDNGFW-SDNIDEFKKD------------NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQ  420 (477)
T ss_dssp             HHTC-------CC--CCGGGGCHHHH-HHHSGGGSSG------------GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred             hcCC-------CC--CCCCcCChhHH-HHHHHhhccc------------chHHHHHHHHHHhhcccccccccCCCcceee
Confidence            1111       10  01111112222 1222222211            1247888999985          34678888


Q ss_pred             HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080          363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~  414 (518)
                      -||.=|+.++...|.-+..+-+.|+=..++++|.+.|++||++|+.|+.-+.
T Consensus       421 VAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         421 VALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            9999999999988877777777899899999999999999999999987664

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.019  Score=51.98  Aligned_cols=207  Identities=15%  Similarity=0.176  Sum_probs=148.1

Q ss_pred             HHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC--CchhhHHH-hhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080          204 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPATELIK-VDGLLDAILRHLKRADEELTTEVAWVVVYL  280 (518)
Q Consensus       204 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~i~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  280 (518)
                      .+...+.+..|+..|..-+-+.+..++-.++++.+....  .|..+.+. ...++..|++.  .+++++...+-..|..+
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~g--ye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKG--YESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHG--GGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhh--cCCcchhhhhhHHHHHH
Confidence            344566778888888777888999999999999986321  12223332 22333444433  34566666666666666


Q ss_pred             hcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhh
Q 010080          281 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL  360 (518)
Q Consensus       281 ~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i  360 (518)
                      .. .+.....++....+..+.+++ ..++-++...|..++.-+.+.........+...   -..++..+..+|.+++.-+
T Consensus       142 ik-~e~lak~iL~s~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~hk~~~aefl~~N---yd~Ff~~~~~LL~s~NYVt  216 (330)
T d1upka_         142 IR-HEPLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH---YDRFFSEYEKLLHSENYVT  216 (330)
T ss_dssp             HT-SHHHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHHHHHHHHHHTTCSSHHH
T ss_pred             Hh-hHHHHHHHHccHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHh---HHHHHHHHHHHhcCCchHH
Confidence            65 455677888888899999988 588889999999999988887754444343321   1346777788999999999


Q ss_pred             HHHHHHHHHHhccC--CHHHHHHHH-hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080          361 KKEAAWVLSNIAAG--SVEHKQLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  417 (518)
Q Consensus       361 ~~~a~~~Lsnl~~~--~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  417 (518)
                      |+.+...|+.+...  +.......+ +..-+..++.+|++.+..++-||-.+.--++.++
T Consensus       217 rRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         217 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            99999999999854  323333333 3356889999999999999999999998888765

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.58  E-value=0.035  Score=51.61  Aligned_cols=199  Identities=17%  Similarity=0.163  Sum_probs=116.7

Q ss_pred             hhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc----CChhHHHHHHHHHHHhhcC---
Q 010080          211 LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVAWVVVYLSAL---  283 (518)
Q Consensus       211 i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~---  283 (518)
                      +..+..++.+....-.+.+.|.. .+....  .|..      ..+..+..++.+    .++.+...+.-+++.++..   
T Consensus        90 ~~~i~~~I~~~~ls~~ea~~~l~-~l~~~~--~Pt~------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          90 LLFLKRTLASEQLTSAEATQIVA-STLSNQ--QATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHH-HHHHTC--CCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHH-HHhccC--CCCH------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            44566666666544444444433 344332  2333      344556666653    4566777777777766631   


Q ss_pred             CchhhhHHHhcCchHHHHHHHc---cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC----
Q 010080          284 SNVATSLLVKSGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE----  356 (518)
Q Consensus       284 ~~~~~~~~~~~g~~~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~----  356 (518)
                      ....+    ...+++.+.+.+.   ...+.+....++++|||+-  .+               ..++.|..++...    
T Consensus       161 ~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--~p---------------~~i~~l~~~l~~~~~~~  219 (336)
T d1lsha1         161 NTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--QP---------------NSIKKIQRFLPGQGKSL  219 (336)
T ss_dssp             TCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CG---------------GGHHHHHTTSTTSSSCC
T ss_pred             CCCCC----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC--CH---------------hHHHHHHHHhccccccc
Confidence            11111    1223344444442   2445555667899999984  21               3678888877432    


Q ss_pred             ---hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh--cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHH
Q 010080          357 ---HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL--STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHL  431 (518)
Q Consensus       357 ---~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL--~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~  431 (518)
                         ...+|..|.|++.+++...+..++        +.+..++  ...++++|..|..+|...  +|+         ..  
T Consensus       220 ~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~---------~~--  278 (336)
T d1lsha1         220 DEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES--KPS---------VA--  278 (336)
T ss_dssp             CCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC---------HH--
T ss_pred             ccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc--CCC---------HH--
Confidence               457999999999999887765443        3455555  345688999999888764  111         11  


Q ss_pred             HHHHhcCchHHHHHhhc-cCCHHHHHHHHHHHHHHHc
Q 010080          432 VSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLR  467 (518)
Q Consensus       432 ~~l~~~g~i~~L~~lL~-~~d~~~~~~~l~~l~~il~  467 (518)
                             .+..+...+. .++.++..-+...|.++.+
T Consensus       279 -------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~  308 (336)
T d1lsha1         279 -------LVSMVAVRLRREPNLQVASFVYSQMRSLSR  308 (336)
T ss_dssp             -------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             -------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence                   2333444443 3667777777777777754

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.035  Score=59.05  Aligned_cols=221  Identities=10%  Similarity=0.053  Sum_probs=125.4

Q ss_pred             CCHHHHHHHHHHHHhhhCCChh-------------hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080          179 SSSPVAEQCAWALGNVAGEGEE-------------FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  245 (518)
Q Consensus       179 ~~~~v~~~a~~~L~nla~d~~~-------------~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~  245 (518)
                      .+...++.++.+++.++..+..             ..+.+. . .+.+.+........-++..++|+++..+....    
T Consensus       417 ~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~-~-~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~----  490 (959)
T d1wa5c_         417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT-K-EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----  490 (959)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH-H-HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHH-H-HHHHHHccCCCchHHHHHHHHHHHHHHHhhcc----
Confidence            4677889999988887642211             111111 1 11111221123356788899999999986532    


Q ss_pred             hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh--------hHHH--hcCchHHHHHHHccCCCc----c
Q 010080          246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT--------SLLV--KSGVLQLLVERLATSNSL----Q  311 (518)
Q Consensus       246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~--------~~~~--~~g~~~~Lv~lL~~~~~~----~  311 (518)
                      .+.  ...+++.++++|.+++..++..|+|++..++.......        +.+.  -..++..++..+......    .
T Consensus       491 ~~~--~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~  568 (959)
T d1wa5c_         491 KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA  568 (959)
T ss_dssp             HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred             HHH--HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHH
Confidence            122  24789999999999999999999999999986322110        0010  012344455555322211    1


Q ss_pred             chhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc----c-ChhhhHHHHHHHHHHhccC-CHHHHHHHHhC
Q 010080          312 LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK----S-EHRVLKKEAAWVLSNIAAG-SVEHKQLIHSS  385 (518)
Q Consensus       312 v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~----~-~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~  385 (518)
                      ....++.+++.++....+.......       .+++.|..++.    + .++.....+.-+++.+... +++....+ ..
T Consensus       569 ~~~~ll~~l~~ii~~~~~~~~~~~~-------~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~  640 (959)
T d1wa5c_         569 ENEFLMRSIFRVLQTSEDSIQPLFP-------QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VD  640 (959)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTGGGHH-------HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHH-HH
Confidence            2234677777776443333333322       35566655542    1 2345566666677777543 33443333 33


Q ss_pred             CCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080          386 EALALLLHLLSTSPFDIKKEVAYVLGNLCV  415 (518)
Q Consensus       386 ~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~  415 (518)
                      .++|.+..+++....+....+...+..+..
T Consensus       641 ~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         641 SMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            478888888877666666666666655543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=0.14  Score=47.53  Aligned_cols=143  Identities=14%  Similarity=0.169  Sum_probs=103.8

Q ss_pred             hhhHHHHHHHHHHhccCCHHHHHHHH-hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhH--HHHHHHH
Q 010080          358 RVLKKEAAWVLSNIAAGSVEHKQLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI--QEHLVSL  434 (518)
Q Consensus       358 ~~i~~~a~~~Lsnl~~~~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~--~~~~~~l  434 (518)
                      .....++..+|..|.... .....++ ..+.+..|+..|.++...+++.|...|+.+|..+.+.+|.+.-+  ..+....
T Consensus        70 ~~~e~e~l~CLkalmn~~-~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~  148 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  148 (343)
T ss_dssp             HHHHHHHHHHHHHHTSSH-HHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccH-HHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            457788889998887654 4455555 45789999999999999999999999999987643323321111  0122234


Q ss_pred             HhcCchHHHHHhhccC-CHHHHHHHHHHHHHHHccCCCCcc----hhHHHhhchHHHHHHHhcCCCHHHHHH
Q 010080          435 VGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNM  501 (518)
Q Consensus       435 ~~~g~i~~L~~lL~~~-d~~~~~~~l~~l~~il~~~~~~~~----~~~ie~~ggl~~l~~L~~~~~~~i~~~  501 (518)
                      -+.+-+.++++.|... +.+....++.++..|+...++-..    +..+..+|-.+.|+.|...+++++..+
T Consensus       149 ~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         149 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ  220 (343)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             cCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHHHHH
Confidence            4567789999988764 578888999999999887665333    355778888888999999999887654

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.15  Score=54.01  Aligned_cols=183  Identities=9%  Similarity=0.112  Sum_probs=98.3

Q ss_pred             CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCc------hhhHHH--
Q 010080          179 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP------ATELIK--  250 (518)
Q Consensus       179 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~------~~~~i~--  250 (518)
                      +...++..++|+++..+....  .+..  ..+++.++.+|++++..++..|+|++..++.......      ..+.+.  
T Consensus       470 ~~~~lr~~~~~~i~~~~~~~~--~~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~  545 (959)
T d1wa5c_         470 PHIILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS  545 (959)
T ss_dssp             SCHHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT
T ss_pred             chHHHHHHHHHHHHHHHhhcc--HHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhh
Confidence            457899999999999886432  2222  2468889999999899999999999999986422110      011110  


Q ss_pred             hhchHHHHHHHhccCChh-----HHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc---cC-CCccchhhhhhhhh
Q 010080          251 VDGLLDAILRHLKRADEE-----LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA---TS-NSLQLLIPVLRSLG  321 (518)
Q Consensus       251 ~~~~l~~L~~lL~~~d~~-----v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~---~~-~~~~v~~~al~~L~  321 (518)
                      ....+..++..+......     ....++.++..+.....+...... ..+++.++..+.   ++ .++.....++.+|+
T Consensus       546 l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~  624 (959)
T d1wa5c_         546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIG  624 (959)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            113334444444322211     122344455544432111111111 123344444332   12 23344556677777


Q ss_pred             hhhcCCCcc-cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080          322 NLVAGDSST-ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  373 (518)
Q Consensus       322 nl~~~~~~~-~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~  373 (518)
                      .+....... ...+       ...++|.+...+..........+.-.++.+..
T Consensus       625 ~l~~~~~~~~~~~l-------~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         625 AILNYTQRQNLPLL-------VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HHHHTSCGGGHHHH-------HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHhcCchhHHHH-------HHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            776443221 1112       23577888888877666666666666665543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=1  Score=40.25  Aligned_cols=237  Identities=13%  Similarity=0.124  Sum_probs=153.0

Q ss_pred             CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh----hhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCC
Q 010080          166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE----EFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGP  240 (518)
Q Consensus       166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~----~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~  240 (518)
                      +.+..|+..|.. -+-+-+..++.+++++-....    ...+++..+-  ..|..++. -+++++.-++.-.|...++..
T Consensus        69 d~l~~Li~~L~~-L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~--eil~~L~~gye~~eiAl~~G~mLREcik~e  145 (330)
T d1upka_          69 GLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ--NILFMLLKGYESPEIALNCGIMLRECIRHE  145 (330)
T ss_dssp             SHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCT--HHHHHHHHGGGSTTTHHHHHHHHHHHHTSH
T ss_pred             ChHHHHHHhCCC-CCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCH--HHHHHHHhhcCCcchhhhhhHHHHHHHhhH
Confidence            356677777765 578888888888888864322    2335565432  33333333 235667777777777777652


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcC---chHHHHHHHccCCCccchhhhh
Q 010080          241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG---VLQLLVERLATSNSLQLLIPVL  317 (518)
Q Consensus       241 ~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g---~~~~Lv~lL~~~~~~~v~~~al  317 (518)
                         ....++...+.+-.+...+..++=++..+|..++..+...+.......+..+   .+.....+| .+++--++..++
T Consensus       146 ---~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL-~s~NYVtrRqSl  221 (330)
T d1upka_         146 ---PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVTKRQSL  221 (330)
T ss_dssp             ---HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred             ---HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHh-cCCchHHHHHHH
Confidence               2233455566777777888888889999999999988876655454454433   445556666 577777888999


Q ss_pred             hhhhhhhcCCCccc--ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC--CHHHHHHH-HhC--CCHHH
Q 010080          318 RSLGNLVAGDSSTI--SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG--SVEHKQLI-HSS--EALAL  390 (518)
Q Consensus       318 ~~L~nl~~~~~~~~--~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~--~~~~~~~l-i~~--~~i~~  390 (518)
                      +.||.+........  ...++     +..-+..++.+|++.+..|+.+|..+.--.++.  .+..+..+ ...  .++..
T Consensus       222 KLLgelLldr~N~~vm~~Yvs-----~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~f  296 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYIS-----KPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEF  296 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhC-----CHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHH
Confidence            99999986543321  12233     246789999999999999999999999888775  23444443 332  34444


Q ss_pred             HHHHhcC--CChhHHHHHHHHHHHhc
Q 010080          391 LLHLLST--SPFDIKKEVAYVLGNLC  414 (518)
Q Consensus       391 Li~lL~~--~~~~v~~eA~~aL~nl~  414 (518)
                      |-+...+  .|.....|=.+.|..|.
T Consensus       297 l~~f~~d~~~DeqF~~EK~~lI~~I~  322 (330)
T d1upka_         297 LSKFQNDRTEDEQFNDEKTYLVKQIR  322 (330)
T ss_dssp             HHHTTTTC-CCSHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCchhhHHHHHHHHHHHHH
Confidence            4454332  35555555555555443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.49  E-value=0.017  Score=50.65  Aligned_cols=23  Identities=13%  Similarity=0.247  Sum_probs=16.2

Q ss_pred             ChhHHHhhhCCCChhHHHHHHHH
Q 010080          210 ALPPLARMMLPNKGSTVRTAAWA  232 (518)
Q Consensus       210 ~i~~L~~ll~~~~~~~~~~a~~~  232 (518)
                      .+..|..+++.+++.++..+++.
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~   89 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYR   89 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTT
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHH
Confidence            45667777777777777777654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=93.14  E-value=0.11  Score=47.98  Aligned_cols=143  Identities=15%  Similarity=0.147  Sum_probs=80.5

Q ss_pred             HHHHHcCCHHH---HHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcC---CCCHHHHHHHHHHHH
Q 010080          119 ETALKAGAIPV---LVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGE---KSSSPVAEQCAWALG  192 (518)
Q Consensus       119 ~~~i~~g~ip~---Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~---~~~~~v~~~a~~~L~  192 (518)
                      +.+...|--+.   +.+++..+.-..  .+|...+..++.... .+..   .+..+..++.+   ..++.++..+.-++|
T Consensus        79 Dal~~~GT~~a~~~i~~~I~~~~ls~--~ea~~~l~~l~~~~~-Pt~~---~l~~~~~l~~~~~~~~~~~l~~~a~La~g  152 (336)
T d1lsha1          79 DAVPAMATSEALLFLKRTLASEQLTS--AEATQIVASTLSNQQ-ATRE---SLSYARELLNTSFIRNRPILRKTAVLGYG  152 (336)
T ss_dssp             HHHHHHCSHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHTCC-CCHH---HHHHHHHHHTCHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHcCCCCH--HHHHHHHHHHhccCC-CCHH---HHHHHHHHHcCcccccchhHHHHHHHHHH
Confidence            44445564444   555555443222  355555555553221 1111   23344455543   146889999999999


Q ss_pred             hhhC----CChhhHHHHHhcCChhHHHhhhC----CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc
Q 010080          193 NVAG----EGEEFRNVLLSQGALPPLARMML----PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR  264 (518)
Q Consensus       193 nla~----d~~~~r~~~~~~g~i~~L~~ll~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~  264 (518)
                      +++.    ..+.+.     ...++.+...+.    ..+.+-...++.+|+|+-.             ...++.|..++..
T Consensus       153 slv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-------------p~~i~~l~~~l~~  214 (336)
T d1lsha1         153 SLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-------------PNSIKKIQRFLPG  214 (336)
T ss_dssp             HHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-------------GGGHHHHHTTSTT
T ss_pred             HHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC-------------HhHHHHHHHHhcc
Confidence            8764    111111     123444444443    4456666777888888841             1456677777653


Q ss_pred             C-------ChhHHHHHHHHHHHhhcCCc
Q 010080          265 A-------DEELTTEVAWVVVYLSALSN  285 (518)
Q Consensus       265 ~-------d~~v~~~a~~~L~~L~~~~~  285 (518)
                      .       +..++..|.|+|..++...+
T Consensus       215 ~~~~~~~~~~~vR~aAi~Alr~~~~~~p  242 (336)
T d1lsha1         215 QGKSLDEYSTRVQAEAIMALRNIAKRDP  242 (336)
T ss_dssp             SSSCCCCSCHHHHHHHHHTTTTGGGTCH
T ss_pred             cccccccccHHHHHHHHHHHHHhhhcCc
Confidence            2       35789999999999887544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.58  E-value=0.048  Score=47.65  Aligned_cols=108  Identities=14%  Similarity=0.106  Sum_probs=48.9

Q ss_pred             hHHHHHhhcCCCCHHHHHHHHHHHH-----hhhCC-ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHH-----HHh
Q 010080          168 LPLLIAHLGEKSSSPVAEQCAWALG-----NVAGE-GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL-----SNL  236 (518)
Q Consensus       168 v~~Lv~lL~~~~~~~v~~~a~~~L~-----nla~d-~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L-----~nL  236 (518)
                      +..|..++.. +++.|+..+++.|+     .+..| +...|..+...-..+.|..++.+++..++..+...+     ..+
T Consensus        68 ~~~L~~Ll~D-~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L  146 (233)
T d1lrva_          68 VEALTPLIRD-SDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRF  146 (233)
T ss_dssp             GGGGGGGTTC-SSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGT
T ss_pred             HHHHHHHhcC-CCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHH
Confidence            3344444544 45555555554432     22222 223444444433345566666666666665554421     112


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHH
Q 010080          237 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV  277 (518)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L  277 (518)
                      ....++. .+..+...-..+.|..+++++++.|+..++..|
T Consensus       147 ~~D~d~~-VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         147 MRDEDRQ-VRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             TTCSCHH-HHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             hcCCCHH-HHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence            2111110 111111122234556666777777777776543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.71  E-value=5.1  Score=36.30  Aligned_cols=170  Identities=16%  Similarity=0.127  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcC----C---C---ChHHHHHHHHHHHHHhcCChHHHHHhc
Q 010080           96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----G---S---PDEQLLEAAWCLTNIAAGKQEETKALL  165 (518)
Q Consensus        96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~----~---~---~~~~~~eA~~~L~nia~~~~~~~~~v~  165 (518)
                      .+..+..+..|+--|...+-..++.+ ..+++..|+.+|..    .   .   ....+.+++.||..+.... .....++
T Consensus        17 ~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~-~G~~~vl   94 (343)
T d2bnxa1          17 DMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTML   94 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSH-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence            34556678888887887766667777 45567777777741    1   1   1345678999999988644 4555555


Q ss_pred             ---CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC--hhhHH----------HHHhcCChhHHHhhhCCC-ChhHHHHH
Q 010080          166 ---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG--EEFRN----------VLLSQGALPPLARMMLPN-KGSTVRTA  229 (518)
Q Consensus       166 ---~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~--~~~r~----------~~~~~g~i~~L~~ll~~~-~~~~~~~a  229 (518)
                         +++..++..|.+ ++..++..|+..|..+|..+  +..-.          ..-+.+-..+++..+.+. +.+....+
T Consensus        95 ~~~~~i~~l~~~L~s-~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~  173 (343)
T d2bnxa1          95 ETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC  173 (343)
T ss_dssp             HSSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHH
T ss_pred             cChHHHHHHHHccCC-CchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHH
Confidence               488889988887 78999999999999998532  11112          222456677888777754 56766666


Q ss_pred             HHHHHHhhcCCCCCchh-----hHHHhhchHHHHHHHhccCChhH
Q 010080          230 AWALSNLIKGPDPKPAT-----ELIKVDGLLDAILRHLKRADEEL  269 (518)
Q Consensus       230 ~~~L~nL~~~~~~~~~~-----~~i~~~~~l~~L~~lL~~~d~~v  269 (518)
                      +..+-.|+.+. +....     .-+...|+.+.+-++=..+++.+
T Consensus       174 m~lIN~li~~~-~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L  217 (343)
T d2bnxa1         174 LQLINALITPA-EELDFRVHIRSELMRLGLHQVLQELREIENEDM  217 (343)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHcCc-ccHHHHHHHHHHHHHCChHHHHHHHHccCChHH
Confidence            66666677553 22211     11134566665555544445443

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.12  E-value=11  Score=29.14  Aligned_cols=93  Identities=16%  Similarity=0.127  Sum_probs=66.0

Q ss_pred             hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcC------CChhHHHHHHHHHHHhcCC
Q 010080          344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLST------SPFDIKKEVAYVLGNLCVS  416 (518)
Q Consensus       344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~------~~~~v~~eA~~aL~nl~~~  416 (518)
                      .++..|..-|.+.++.++..|..+|--+... ++.....+.+.+++..|+.++..      .+..|+..+...|..-+..
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            4777888888999999999999999888876 46666777778899999999853      4667888888777665432


Q ss_pred             CCCCCCCchhHHHHHHHHHhcCch
Q 010080          417 PTEGEGKPKLIQEHLVSLVGRGCL  440 (518)
Q Consensus       417 ~~~~~~~~~~~~~~~~~l~~~g~i  440 (518)
                      ..   .-| .+.+-...|...|+|
T Consensus       125 fp---~~~-~~~~~Y~~L~~~Gii  144 (145)
T d1ujka_         125 LP---EEV-KIAEAYQMLKKQGIV  144 (145)
T ss_dssp             CT---TCH-HHHHHHHHHHHTTSC
T ss_pred             CC---Cch-HHHHHHHHHHHCCCc
Confidence            11   111 123444556666765