Citrus Sinensis ID: 010099

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MSATDTSHHSKVTPVSPPAVPQSLPNTSNSKIAGTVADSGRGGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccccccccccccEEEEEEEcccccccEEEEEEEcccccccccEEEEEEEcccHHHHHHHHHHHcccccEEEEEcccccHHccccHHHHHHHHccccEEEEEEcccccccccccccccHHHHHHHccccHHcccccEEEEEEccEEEccccHHHHcccccccEEEEEEEcccccHHHHHHcccccccccccccccccHHEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcHHHHccccccccccccccccccEEEEccccccccccccccccHHHHHHHHccccHHHHHccccc
ccccccccccccccccccccccccccccccEEEEEEEcccccccccccccEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHccccccHHccccccEEEEEEcccHHHHEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcHHccEEEEEcccEEEEEccHHHHcEcccccEcccHHcccccHHHHHHHHccccccccHHHHHcccEEEcHHHHHHHcHHHHHHHHHHHHcccccEEEcccccccEEEEcccccccccccEEEcccccccccHHHHHccEEEEEccccccHHHHccHcccHHHHHHcccccHHHHHccccc
msatdtshhskvtpvsppavpqslpntsnskiagtvadsgrggvdenencelkfgsyCLWRREHREEMKDTMVKKLKDQLFVARAYypsiaklpsqDKLTRALRQNIQEVERVLsesatdvdlppgiEKKIQRMEAAITKAksvpvdcsnvdKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMelsqadrfsdpslhhyVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLlsvdgpsihskMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWdinmggkvngAVQSCSVSLGQLksylgensydknscawmsglnivDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWalsglghdygLNIEAIKKAAVLHYNgnmkpwlelgIPRYKKFWKKFLNQEDQLLSECNVHP
msatdtshhskvtpvsppavpqslpntsnskIAGTVADsgrggvdenencelkfgsycLWRREHREEMKDTMVKKLKDQLFVARAYYpsiaklpsqdkLTRALRQNIQEVervlsesatdvdlppgiEKKIQRMEAAITkaksvpvdcsnvDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDqllsecnvhp
MSATDTSHHSKVTPVSPPAVPQSLPNTSNSKIAGTVADSGRGGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTkvvvldddvvvqkdlSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP
************************************************NCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKL********************************************ITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQ*********
***********************************************************************MVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQ***********************QRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEY********************LHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH*
*********************QSLPNTSNSKIAGTVADSGRGGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREV*********VALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP
****************************NSKIAGTVADSGRGGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP
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SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSATDTSHHSKVTPVSPPAVPQSLPNTSNSKIAGTVADSGRGGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query518 2.2.26 [Sep-21-2011]
Q9ZVI7619 Probable galacturonosyltr yes no 0.984 0.823 0.626 0.0
Q93ZX7616 Probable galacturonosyltr no no 0.866 0.728 0.393 2e-98
Q9LE59673 Polygalacturonate 4-alpha no no 0.891 0.686 0.352 2e-95
Q0WQD2680 Probable galacturonosyltr no no 0.888 0.676 0.380 1e-93
Q8RXE1610 Probable galacturonosyltr no no 0.835 0.709 0.366 5e-82
Q9M9Y5589 Probable galacturonosyltr no no 0.837 0.736 0.356 7e-80
Q949Q1537 Probable galacturonosyltr no no 0.839 0.810 0.341 7e-70
Q9ZPZ1528 Putative galacturonosyltr no no 0.845 0.829 0.328 3e-68
Q9LSG3559 Galacturonosyltransferase no no 0.731 0.677 0.326 1e-60
Q9SKT6536 Probable galacturonosyltr no no 0.851 0.822 0.324 3e-59
>sp|Q9ZVI7|GAUT7_ARATH Probable galacturonosyltransferase 7 OS=Arabidopsis thaliana GN=GAUT7 PE=1 SV=2 Back     alignment and function desciption
 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/520 (62%), Positives = 404/520 (77%), Gaps = 10/520 (1%)

Query: 2   SATDTSHHSKVTPVSPPAVPQSLP-NTSNSKIAGTVADSGRGGVDEN-ENCELKFGSYCL 59
           + + T    +  PVSP  V    P N + S+ + T         DE    CE+K+GSYCL
Sbjct: 107 ATSGTDSKKRGLPVSPTVVANPSPANKTKSEASYTGVQRKIVSGDETWRTCEVKYGSYCL 166

Query: 60  WRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESAT 119
           WR E++E MKD  VK++KDQLFVARAYYPSIAK+PSQ KLTR ++QNIQE ER+LSES+ 
Sbjct: 167 WREENKEPMKDAKVKQMKDQLFVARAYYPSIAKMPSQSKLTRDMKQNIQEFERILSESSQ 226

Query: 120 DVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQL 179
           D DLPP ++KK+Q+MEA I KAKS PVDC+NVDKK RQILD+T DEA+FHMKQS FLYQL
Sbjct: 227 DADLPPQVDKKLQKMEAVIAKAKSFPVDCNNVDKKLRQILDLTEDEASFHMKQSVFLYQL 286

Query: 180 AVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINS 239
           AVQTMPKSLHCLSMRLTVE+FKS S  +E   +++FSDPSL H+VI S N+LASSVVINS
Sbjct: 287 AVQTMPKSLHCLSMRLTVEHFKSDS--LEDPISEKFSDPSLLHFVIISDNILASSVVINS 344

Query: 240 TVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHM 299
           TV+ AR+SKN VFHVLTD QNYFAMK WF RN  K++TVQVLNIE+L L+  D    + +
Sbjct: 345 TVVHARDSKNFVFHVLTDEQNYFAMKQWFIRNPCKQSTVQVLNIEKLELDDSD----MKL 400

Query: 300 FLPVEYRVSLLSVD-GPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLS 358
            L  E+RVS  S D   S  ++  Y+S+FS  HYLLP++F  L KVV+LDDDVVVQ+DLS
Sbjct: 401 SLSAEFRVSFPSGDLLASQQNRTHYLSLFSQSHYLLPKLFDKLEKVVILDDDVVVQRDLS 460

Query: 359 ALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTK 418
            LWD++M GKVNGAV+SC+V LGQL+S L   ++D N+C WMSGLN+VDLARWR L +++
Sbjct: 461 PLWDLDMEGKVNGAVKSCTVRLGQLRS-LKRGNFDTNACLWMSGLNVVDLARWRALGVSE 519

Query: 419 TYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAV 478
           TYQ+  +E+S G+ES EA+AL+ SLLTFQD VYALD  WALSGLG+DY +N +AIK AA+
Sbjct: 520 TYQKYYKEMSSGDESSEAIALQASLLTFQDQVYALDDKWALSGLGYDYYINAQAIKNAAI 579

Query: 479 LHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP 518
           LHYNGNMKPWLELGIP YK +W++ L++ED+ LS+CNV+P
Sbjct: 580 LHYNGNMKPWLELGIPNYKNYWRRHLSREDRFLSDCNVNP 619
May be involved in pectin biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1 Back     alignment and function description
>sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2 Back     alignment and function description
>sp|Q8RXE1|GAUT5_ARATH Probable galacturonosyltransferase 5 OS=Arabidopsis thaliana GN=GAUT5 PE=2 SV=1 Back     alignment and function description
>sp|Q9M9Y5|GAUT6_ARATH Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1 Back     alignment and function description
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPZ1|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1 Back     alignment and function description
>sp|Q9LSG3|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1 Back     alignment and function description
>sp|Q9SKT6|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
239056181541 transferase, transferring glycosyl group 0.916 0.878 0.699 0.0
224140665 620 glycosyltransferase, CAZy family GT8 [Po 0.949 0.793 0.701 0.0
449459576612 PREDICTED: probable galacturonosyltransf 0.982 0.831 0.637 0.0
449511537612 PREDICTED: probable galacturonosyltransf 0.982 0.831 0.637 0.0
224069020590 glycosyltransferase [Populus trichocarpa 0.945 0.830 0.691 0.0
255557911576 Glycosyltransferase QUASIMODO1, putative 0.922 0.829 0.691 0.0
297827451617 GAUT7/LGT7 [Arabidopsis lyrata subsp. ly 0.978 0.821 0.639 0.0
356532111 638 PREDICTED: probable galacturonosyltransf 0.955 0.775 0.640 0.0
296085804568 unnamed protein product [Vitis vinifera] 0.903 0.823 0.613 0.0
18404824 619 alpha-1,4-galacturonosyltransferase [Ara 0.984 0.823 0.626 0.0
>gi|239056181|emb|CAQ58617.1| transferase, transferring glycosyl groups / unknown protein [Vitis vinifera] Back     alignment and taxonomy information
 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/483 (69%), Positives = 406/483 (84%), Gaps = 8/483 (1%)

Query: 44  VDENE-NCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRA 102
           VDE+E +CELKFGSYCLWR+EHRE+MKD MVKKLKD+LFVARAYYPS+AKLP+ DKL+R 
Sbjct: 59  VDESEKSCELKFGSYCLWRQEHREDMKDMMVKKLKDRLFVARAYYPSVAKLPAHDKLSRE 118

Query: 103 LRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMT 162
           L+QNIQE+ERVLSE++TD +LPP I KK+ RME AIT+AKS+ VDC+NVDKK RQILDMT
Sbjct: 119 LKQNIQELERVLSEASTDAELPPQIGKKLTRMEVAITRAKSITVDCNNVDKKLRQILDMT 178

Query: 163 NDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHH 222
            DEA+FHMKQSAFLYQLA+ T PKS HCLSMRLTVEYFKSP + ME+ Q +++ +P+  H
Sbjct: 179 EDEADFHMKQSAFLYQLAIHTTPKSHHCLSMRLTVEYFKSPPLDMEVQQDEKYMNPASQH 238

Query: 223 YVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLN 282
           YVIFS NVLAS+VVINSTV+   ES NQVFHV+TDGQNYFAMKLWF RNTF++A VQVLN
Sbjct: 239 YVIFSKNVLASTVVINSTVMHTEESGNQVFHVVTDGQNYFAMKLWFSRNTFRQAMVQVLN 298

Query: 283 IEQLNLESHDKAILIHMFLPVEYRVSLLSVDG-PSIHSKMQYISVFSHLHYLLPEIFQSL 341
           IE LNL+ HD+A L+ + LP E+R+S  S +  P+   + +Y+S+FSH HYLLPEIFQ+L
Sbjct: 299 IEDLNLDHHDEATLLDLSLPQEFRISYGSANNLPTSSMRTEYLSIFSHSHYLLPEIFQNL 358

Query: 342 TKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMS 401
            KVV+LDDD+VVQ+DLSALW INM GKVNGAV+ C V LG+LKSYLGE   D++SCAWMS
Sbjct: 359 KKVVILDDDIVVQQDLSALWSINMEGKVNGAVEFCRVRLGELKSYLGEKGVDEHSCAWMS 418

Query: 402 GLNIVDLARWRELDLTKTYQRLVREV------SMGEESKEAVALRGSLLTFQDLVYALDG 455
           GLNI+DL RWRE D+T  Y+RLV+EV      SMGEES   VALR SLL+FQDLVYALD 
Sbjct: 419 GLNIIDLVRWREQDVTGLYRRLVQEVSHVQKLSMGEESLGHVALRASLLSFQDLVYALDD 478

Query: 456 VWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECN 515
            W  SGLGH+Y L+ +AIK+AAVLHYNGNMKPWLELGIP+Y+ +W+KFLN ++Q L+ECN
Sbjct: 479 TWVFSGLGHNYHLDTQAIKRAAVLHYNGNMKPWLELGIPKYRNYWRKFLNLDEQYLTECN 538

Query: 516 VHP 518
           V+P
Sbjct: 539 VNP 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224140665|ref|XP_002323701.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi|222868331|gb|EEF05462.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459576|ref|XP_004147522.1| PREDICTED: probable galacturonosyltransferase 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449511537|ref|XP_004163983.1| PREDICTED: probable galacturonosyltransferase 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224069020|ref|XP_002326255.1| glycosyltransferase [Populus trichocarpa] gi|222833448|gb|EEE71925.1| glycosyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255557911|ref|XP_002519984.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi|223540748|gb|EEF42308.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297827451|ref|XP_002881608.1| GAUT7/LGT7 [Arabidopsis lyrata subsp. lyrata] gi|297327447|gb|EFH57867.1| GAUT7/LGT7 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356532111|ref|XP_003534617.1| PREDICTED: probable galacturonosyltransferase 7-like [Glycine max] Back     alignment and taxonomy information
>gi|296085804|emb|CBI31128.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|18404824|ref|NP_565893.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|334184793|ref|NP_001189702.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|75216987|sp|Q9ZVI7.2|GAUT7_ARATH RecName: Full=Probable galacturonosyltransferase 7; AltName: Full=Like glycosyl transferase 7 gi|15293097|gb|AAK93659.1| unknown protein [Arabidopsis thaliana] gi|20197396|gb|AAC67353.2| expressed protein [Arabidopsis thaliana] gi|20259303|gb|AAM14387.1| unknown protein [Arabidopsis thaliana] gi|330254468|gb|AEC09562.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|330254469|gb|AEC09563.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
TAIR|locus:2064163619 GAUT7 "AT2G38650" [Arabidopsis 0.980 0.820 0.605 6.3e-163
TAIR|locus:2160957616 GAUT4 "galacturonosyltransfera 0.984 0.827 0.352 1e-84
TAIR|locus:2098836673 GAUT1 "galacturonosyltransfera 0.889 0.684 0.334 5.2e-81
TAIR|locus:2121753680 GAUT3 "galacturonosyltransfera 0.886 0.675 0.363 2.6e-79
TAIR|locus:504955915610 LGT5 "los glycosyltransferase 0.947 0.804 0.327 2.9e-71
TAIR|locus:2039934528 GAUT2 "galacturonosyltransfera 0.847 0.831 0.302 1.6e-61
TAIR|locus:2027453537 GAUT11 "galacturonosyltransfer 0.845 0.815 0.311 4e-58
TAIR|locus:2051426536 GAUT10 "galacturonosyltransfer 0.866 0.837 0.291 2.3e-55
TAIR|locus:2074572561 GAUT9 "galacturonosyltransfera 0.789 0.729 0.303 2.1e-52
TAIR|locus:2090210559 QUA1 "QUASIMODO 1" [Arabidopsi 0.876 0.812 0.297 1.7e-50
TAIR|locus:2064163 GAUT7 "AT2G38650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1586 (563.4 bits), Expect = 6.3e-163, P = 6.3e-163
 Identities = 315/520 (60%), Positives = 389/520 (74%)

Query:     2 SATDTSHHSKVTPVSPPAVPQSLP-NTSNSKIAGTVADSGRGGVDEN-ENCELKFGSYCL 59
             S TD+       PVSP  V    P N + S+ + T         DE    CE+K+GSYCL
Sbjct:   109 SGTDSKKRG--LPVSPTVVANPSPANKTKSEASYTGVQRKIVSGDETWRTCEVKYGSYCL 166

Query:    60 WRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESAT 119
             WR E++E MKD  VK++KDQLFVARAYYPSIAK+PSQ KLTR ++QNIQE ER+LSES+ 
Sbjct:   167 WREENKEPMKDAKVKQMKDQLFVARAYYPSIAKMPSQSKLTRDMKQNIQEFERILSESSQ 226

Query:   120 DVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQL 179
             D DLPP ++KK+Q+MEA I KAKS PVDC+NVDKK RQILD+T DEA+FHMKQS FLYQL
Sbjct:   227 DADLPPQVDKKLQKMEAVIAKAKSFPVDCNNVDKKLRQILDLTEDEASFHMKQSVFLYQL 286

Query:   180 AVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINS 239
             AVQTMPKSLHCLSMRLTVE+FKS S+   +S+  +FSDPSL H+VI S N+LASSVVINS
Sbjct:   287 AVQTMPKSLHCLSMRLTVEHFKSDSLEDPISE--KFSDPSLLHFVIISDNILASSVVINS 344

Query:   240 TVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHM 299
             TV+ AR+SKN VFHVLTD QNYFAMK WF RN  K++TVQVLNIE+L L+  D    + +
Sbjct:   345 TVVHARDSKNFVFHVLTDEQNYFAMKQWFIRNPCKQSTVQVLNIEKLELDDSD----MKL 400

Query:   300 FLPVEYRVSLLSVDG-PSIHSKMQYISVFSHLHYLLPEIFQSLTXXXXXXXXXXXXXXXS 358
              L  E+RVS  S D   S  ++  Y+S+FS  HYLLP++F  L                S
Sbjct:   401 SLSAEFRVSFPSGDLLASQQNRTHYLSLFSQSHYLLPKLFDKLEKVVILDDDVVVQRDLS 460

Query:   359 ALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTK 418
              LWD++M GKVNGAV+SC+V LGQL+S L   ++D N+C WMSGLN+VDLARWR L +++
Sbjct:   461 PLWDLDMEGKVNGAVKSCTVRLGQLRS-LKRGNFDTNACLWMSGLNVVDLARWRALGVSE 519

Query:   419 TYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAV 478
             TYQ+  +E+S G+ES EA+AL+ SLLTFQD VYALD  WALSGLG+DY +N +AIK AA+
Sbjct:   520 TYQKYYKEMSSGDESSEAIALQASLLTFQDQVYALDDKWALSGLGYDYYINAQAIKNAAI 579

Query:   479 LHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP 518
             LHYNGNMKPWLELGIP YK +W++ L++ED+ LS+CNV+P
Sbjct:   580 LHYNGNMKPWLELGIPNYKNYWRRHLSREDRFLSDCNVNP 619
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZVI7GAUT7_ARATH2, ., 4, ., 1, ., -0.62690.98450.8239yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVI.562.1
glycosyltransferase, CAZy family GT8 (EC-2.4.1.43) (610 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2235.1
hypothetical protein (287 aa)
     •  0.899
gw1.XIII.724.1
pectinesterase family protein (EC-3.1.1.11) (512 aa)
     •  0.899
gw1.X.3259.1
pectinesterase family protein (EC-3.1.1.11) (555 aa)
     •  0.899
gw1.IV.576.1
pectinesterase family protein (EC-3.1.1.11) (315 aa)
     •  0.899
grail3.0035002801
hypothetical protein (431 aa)
     •  0.899
grail3.0033029301
hypothetical protein (435 aa)
     •  0.899
fgenesh4_pm.C_LG_II000883
hypothetical protein (450 aa)
     •  0.899
fgenesh4_pg.C_LG_XIII000035
hypothetical protein (339 aa)
     •  0.899
eugene3.00880019
hypothetical protein (457 aa)
     •  0.899
eugene3.00280097
RecName- Full=Pectinesterase; EC=3.1.1.11; (520 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
PLN02769629 PLN02769, PLN02769, Probable galacturonosyltransfe 0.0
PLN02829639 PLN02829, PLN02829, Probable galacturonosyltransfe 1e-126
PLN02910657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 1e-118
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 1e-115
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 1e-101
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 1e-96
PLN02523559 PLN02523, PLN02523, galacturonosyltransferase 1e-79
PLN02870533 PLN02870, PLN02870, Probable galacturonosyltransfe 3e-77
PLN02867535 PLN02867, PLN02867, Probable galacturonosyltransfe 2e-67
PLN02659534 PLN02659, PLN02659, Probable galacturonosyltransfe 1e-66
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 1e-35
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 1e-16
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 2e-14
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 1e-11
cd06432248 cd06432, GT8_HUGT1_C_like, The C-terminal domain o 8e-05
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information 
 Score =  912 bits (2359), Expect = 0.0
 Identities = 340/512 (66%), Positives = 407/512 (79%), Gaps = 3/512 (0%)

Query: 8   HHSKVTPVSPPAVPQSLPNTSNSKIAGTVADSGRGGVDENENCELKFGSYCLWRREHREE 67
           +   V P S P       N S +              +  ++CEL+FGSYCLW  EH+E 
Sbjct: 119 NPLPVKPHSVPVPSSDTKNKSTAIDKENKGQ-KADEDENEKSCELEFGSYCLWSEEHKEV 177

Query: 68  MKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGI 127
           MKD++VK+LKDQLFVARAYYPSIAKLP Q+KLTR L+QNIQE ERVLSES TD DLPP I
Sbjct: 178 MKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADLPPFI 237

Query: 128 EKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKS 187
           +KK+++ME  I +AKS PVDC+NVD+K RQILDMT DEA+FHMKQSAFLYQL VQTMPKS
Sbjct: 238 QKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKS 297

Query: 188 LHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARES 247
            HCLSMRLTVEYFKS S+ ME S +++FSDPSL HYVIFS NVLA+SVVINSTV+ +RES
Sbjct: 298 HHCLSMRLTVEYFKSSSLDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRES 357

Query: 248 KNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRV 307
            N VFHVLTD QNY+AMK WF RN++KEA VQVLNIE L L+  DK  L  + LP E+RV
Sbjct: 358 GNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILKDLDKFALKQLSLPEEFRV 417

Query: 308 SLLSVDGPS-IHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMG 366
           S  SVD PS    + +Y+SVFSH H+LLPEIF+ L KVVVLDDDVVVQ+DLS LW+++MG
Sbjct: 418 SFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMG 477

Query: 367 GKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVRE 426
           GKVNGAVQ C V LGQLK+YLG+ ++D NSCAWMSGLN++DL +WRELD+T+TY +L+++
Sbjct: 478 GKVNGAVQFCGVRLGQLKNYLGDTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQK 537

Query: 427 VSM-GEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNM 485
            S  GEES  A AL  SLLTFQDL+Y LD  W LSGLGHDYG++ +AIKKAAVLHYNGNM
Sbjct: 538 FSKDGEESLRAAALPASLLTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNM 597

Query: 486 KPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 517
           KPWLELGIP+YKK+WK+FLN++D+ + ECNV+
Sbjct: 598 KPWLELGIPKYKKYWKRFLNRDDRFMDECNVN 629

Length = 629
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 518
PLN02769629 Probable galacturonosyltransferase 100.0
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
PLN02523559 galacturonosyltransferase 100.0
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02867535 Probable galacturonosyltransferase 100.0
PLN02659534 Probable galacturonosyltransferase 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 100.0
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.94
PLN00176333 galactinol synthase 99.93
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.8
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 99.18
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 97.83
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 96.87
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 93.13
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 90.94
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 90.86
PLN03181453 glycosyltransferase; Provisional 82.47
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=2.6e-142  Score=1148.77  Aligned_cols=506  Identities=68%  Similarity=1.087  Sum_probs=477.7

Q ss_pred             CCCCCCCCCCCCCCCCCCccccc--cccccCCcccccccccccccccccceehhhcccchhHHHHHhHHHHHHHHhhhhh
Q 010099           12 VTPVSPPAVPQSLPNTSNSKIAG--TVADSGRGGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPS   89 (518)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dq~~~a~~y~~~   89 (518)
                      ..|..+++++.|.+.+++.++..  .+...+.+++|++|+||++||||||||+||+++|+|++||+|||||||||||||+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~c~~~~g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~  199 (629)
T PLN02769        120 PLPVKPHSVPVPSSDTKNKSTAIDKENKGQKADEDENEKSCELEFGSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPS  199 (629)
T ss_pred             CCCCCCCCCCCcccccccccccccccccccccccccccccceeeccceeeecccccccCcHHHHHHHHHHHHHHHHHHHh
Confidence            34556666666667777665444  5567788999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhHHHHHHH
Q 010099           90 IAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFH  169 (518)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~  169 (518)
                      |||+++|++|+|||++||||+||+|||+++|+|||+++.++|++|+++|++||+++|||.+|++|||||+++|||++++|
T Consensus       200 iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~  279 (629)
T PLN02769        200 IAKLPGQEKLTRELKQNIQEHERVLSESITDADLPPFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFH  279 (629)
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhcCCcccchhhhhccHHHhcCCcccccccccCCCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCc
Q 010099          170 MKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKN  249 (518)
Q Consensus       170 ~~~~~~~~~la~~~~Pk~~hcl~~rl~~ey~~~~~~~~~~~~~~~l~d~~~ihIv~~sDNvLaasVvI~Sil~n~~~p~~  249 (518)
                      +||++||+||||+|+|||||||+||||.|||.+++.++++|++++|+||+++|||+|||||||++|||||++.|+++|++
T Consensus       280 ~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~  359 (629)
T PLN02769        280 MKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSSLDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGN  359 (629)
T ss_pred             HHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhccCCchhhccCCccceEEEEeccceeeeeehhhhhhhccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccccchhhHHHhhhccccceecccccCCCCC-CcCccccccHHH
Q 010099          250 QVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPS-IHSKMQYISVFS  328 (518)
Q Consensus       250 i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L~ql~~~~~~~~~f~~~~~p~-~~~r~~ylS~~t  328 (518)
                      ++||||||..++.+|++||..+++++|+|+|+++|+|+|+..+.++++|++.+++|+++|+++..|. ..++++|+|+++
T Consensus       360 ~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~eyiS~~n  439 (629)
T PLN02769        360 IVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILKDLDKFALKQLSLPEEFRVSFRSVDNPSSKQMRTEYLSVFS  439 (629)
T ss_pred             eEEEEecChhhHHHHHHHHhcCCCccceEEEeeeeeeeecccchHHHHhhccchhhhhhhccCCCCchhccCcccccHHH
Confidence            9999999999999999999999999999999999999998778889999999999999998776665 344799999999


Q ss_pred             HHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeecccccchhhhhhhhccCCCCCCCCccccceEEEec
Q 010099          329 HLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDL  408 (518)
Q Consensus       329 y~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~~~~~~~yl~~~~~~~~~~yfNsGVlLiNL  408 (518)
                      |+|||||++||+++||||||+|+||++||++||++||+|+++|||+||..+++.+..|++..+|+++.||||+|||||||
T Consensus       440 h~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~rl~~~~~yl~~~~F~~~~CyFNSGVLLINL  519 (629)
T PLN02769        440 HSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNSCAWMSGLNVIDL  519 (629)
T ss_pred             HHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhhhhhhhhhhhcccCCCccccccccCeeEeeH
Confidence            99999999999999999999999999999999999999999999999987777777888878898899999999999999


Q ss_pred             hHHHHhhHHHHHHHHHHHHcc-CCcchhhhhchhhhhhccCcEEEcCCcccccCCCCCCCCCHhhhcCCEEEEecCCCCC
Q 010099          409 ARWRELDLTKTYQRLVREVSM-GEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKP  487 (518)
Q Consensus       409 ~~WR~~nit~~~~~~l~~~~~-~~~~~dQd~Ln~~li~f~~~i~~Lp~~WN~~~lg~~~~~~~~~~~~~~IIHY~G~~KP  487 (518)
                      ++||++++++++++|++++.. +.+.+++++||++|++|+|++++||.+||++|+|+++.+..+.+++|+||||+|+.||
T Consensus       520 ~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF~g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KP  599 (629)
T PLN02769        520 DKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKP  599 (629)
T ss_pred             HHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHHHHhcCeEEECCHHHccccccccccccccccCCcEEEEECCCCCC
Confidence            999999999999999988654 5788999999999999999999999999999999988877788899999999999999


Q ss_pred             cccCCccchHHHHHHHHhhChhhhccccCC
Q 010099          488 WLELGIPRYKKFWKKFLNQEDQLLSECNVH  517 (518)
Q Consensus       488 W~~~~~~~y~~~W~~Y~~~s~~fl~~c~~~  517 (518)
                      |+..+.++|+++||+|++++++|||+||||
T Consensus       600 W~e~~i~~yr~~W~kYl~~~~~fl~~Cni~  629 (629)
T PLN02769        600 WLELGIPKYKKYWKRFLNRDDRFMDECNVN  629 (629)
T ss_pred             ccCCCCChHHHHHHHHhccCChHHhhCCCC
Confidence            999999999999999999999999999997

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 1e-40
3tzt_A276 Glycosyl transferase family 8; structural genomics 2e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score =  148 bits (374), Expect = 1e-40
 Identities = 49/302 (16%), Positives = 94/302 (31%), Gaps = 53/302 (17%)

Query: 224 VIFSTN---VLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQV 280
           ++F+ +        V   S V  A       FHVL  G +                 ++ 
Sbjct: 3   IVFAADDNYAAYLCVAAKS-VEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRF 61

Query: 281 LNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQS 340
           +++   +                                 +++IS+ ++    L E    
Sbjct: 62  IDVNPEDFAG--------------------------FPLNIRHISITTYARLKLGEYIAD 95

Query: 341 LTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWM 400
             KV+ LD DV+V+  L+ LWD ++G    GA     V   + + Y  +         + 
Sbjct: 96  CDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE--RQEGYKQKIGMADGEYYFN 153

Query: 401 SGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLL--TFQDLVYALDGVWA 458
           +G+ +++L +WR  D+ K     V      +           +L   F+  V   +  + 
Sbjct: 154 AGVLLINLKKWRRHDIFKMSSEWVE-----QYKDVMQYQDQDILNGLFKGGVCYANSRFN 208

Query: 459 LSGLGHDYGLN--------------IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFL 504
                + +  N                 +   AV HY G  KPW         + + +  
Sbjct: 209 FMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268

Query: 505 NQ 506
             
Sbjct: 269 GS 270
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 99.94
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.92
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=100.00  E-value=5.2e-47  Score=381.48  Aligned_cols=258  Identities=15%  Similarity=0.166  Sum_probs=186.9

Q ss_pred             CceEEEEEeC-Cchh-hHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHH-HHHhccCCCceEEEEEeccccccchhhHH
Q 010099          219 SLHHYVIFST-NVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKL-WFFRNTFKEATVQVLNIEQLNLESHDKAI  295 (518)
Q Consensus       219 ~~ihIv~~sD-NvLa-asVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~-wf~~~~~~~a~i~v~~i~~f~~~~~~~~~  295 (518)
                      -.+|||+++| ||+. ++|+|+|++.|+++ ++++|||++++++.+..+. ...... .+..|+++.+++-.|       
T Consensus         4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~-~~~~i~~~~~~~~~~-------   74 (276)
T 3tzt_A            4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKK-FSYTLYPIRATDDLF-------   74 (276)
T ss_dssp             -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHT-TTCEEEEEECC-----------
T ss_pred             eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHH-cCCEEEEEEeCHHHH-------
Confidence            3589999555 5765 57999999999986 6899999999999877542 112222 356788887653111       


Q ss_pred             HhhhccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhc-cCCeEEEEecCeEEeCCchHHHcccCCCCeeeeec
Q 010099          296 LIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQ  374 (518)
Q Consensus       296 L~ql~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP-~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~  374 (518)
                       .               ..|    ...++|..+|+||++|++|| +++||||||+|+||++||++||++|++|+++|||+
T Consensus        75 -~---------------~~~----~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~  134 (276)
T 3tzt_A           75 -S---------------FAK----VTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAAS  134 (276)
T ss_dssp             -----------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEE
T ss_pred             -h---------------cCc----cccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEE
Confidence             0               111    12467899999999999999 69999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcEEEcC
Q 010099          375 SCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALD  454 (518)
Q Consensus       375 d~~~~~~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~Lp  454 (518)
                      ||...  .+.++....+++...+|||||||||||++||+.++++++++++++......++|||+||   ++|.++++.||
T Consensus       135 d~~~~--~~~~~~~~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN---~~f~~~~~~Lp  209 (276)
T 3tzt_A          135 HTGKT--DMANNVNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILN---AMYGDRIYPLD  209 (276)
T ss_dssp             C----------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC--------CHHHH---HHHGGGEEEEE
T ss_pred             ecccc--hHHHHHHHhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccCCChhHHH---HHHhCCEEECC
Confidence            99753  12222333455555699999999999999999999999999998866566789999998   68999999999


Q ss_pred             C-cccccCCCCCC--------CCC-HhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhChhhh
Q 010099          455 G-VWALSGLGHDY--------GLN-IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLL  511 (518)
Q Consensus       455 ~-~WN~~~lg~~~--------~~~-~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s~~fl  511 (518)
                      . +||+++ |+..        ... .+..++|+||||+|..|||...+.++|+++||+|++...++|
T Consensus       210 ~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~  275 (276)
T 3tzt_A          210 DLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL  275 (276)
T ss_dssp             HHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred             chheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence            8 999985 3321        111 235678999999999999999999999999999999999887
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 518
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 2e-26
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 1e-05
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  106 bits (265), Expect = 2e-26
 Identities = 51/310 (16%), Positives = 99/310 (31%), Gaps = 55/310 (17%)

Query: 224 VIFSTN---VLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQV 280
           ++F+ +        V   S V  A       FHVL                         
Sbjct: 3   IVFAADDNYAAYLCVAAKS-VEAAHPDTEIRFHVLDA----------------------- 38

Query: 281 LNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHS---KMQYISVFSHLHYLLPEI 337
                  +   ++A +          +  + V+          +++IS+ ++    L E 
Sbjct: 39  ------GISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLKLGEY 92

Query: 338 FQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSC 397
                KV+ LD DV+V+  L+ LWD ++G    GA     V   + + Y  +        
Sbjct: 93  IADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE--RQEGYKQKIGMADGEY 150

Query: 398 AWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVW 457
            + +G+ +++L +WR  D+ K     V +     + ++   L      F+  V   +  +
Sbjct: 151 YFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDIL---NGLFKGGVCYANSRF 207

Query: 458 ALSGLGHDYGLN--------------IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKF 503
                 + +  N                 +   AV HY G  KPW         + + + 
Sbjct: 208 NFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTEL 267

Query: 504 LNQEDQLLSE 513
                 +  E
Sbjct: 268 AGSLTTVPEE 277
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.94
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 93.44
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 88.4
d1fo8a_343 N-acetylglucosaminyltransferase I {Rabbit (Oryctol 85.86
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=2.6e-44  Score=357.15  Aligned_cols=255  Identities=19%  Similarity=0.242  Sum_probs=201.4

Q ss_pred             eEEEE-EeCCchh-hHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEeccccccchhhHHHhh
Q 010099          221 HHYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIH  298 (518)
Q Consensus       221 ihIv~-~sDNvLa-asVvI~Sil~n~~~p~~i~FHIltd~is~~~~~~wf~~~~~~~a~i~v~~i~~f~~~~~~~~~L~q  298 (518)
                      ||||+ +++||+. ++|+|+|++.|+++ ..++|||++++++.+........-.-.+..+.++.++...+.         
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~---------   70 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFA---------   70 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGT---------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhc---------
Confidence            69999 5666765 56999999998875 589999999999987755322221223567888876532210         


Q ss_pred             hccccceecccccCCCCCCcCccccccHHHHHHHhhhhhhccCCeEEEEecCeEEeCCchHHHcccCCCCeeeeeccccc
Q 010099          299 MFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV  378 (518)
Q Consensus       299 l~~~~~~~~~f~~~~~p~~~~r~~ylS~~ty~Rl~iPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~  378 (518)
                                    ..+   ...+++|.++|+||++|++||+++||||||+||||++||++||++|++++.+|||.|+..
T Consensus        71 --------------~~~---~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~  133 (282)
T d1ga8a_          71 --------------GFP---LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFV  133 (282)
T ss_dssp             --------------TSC---CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHH
T ss_pred             --------------ccc---ccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhh
Confidence                          111   113578999999999999999999999999999999999999999999999999999764


Q ss_pred             chhhhhhhhccCCCCCCCCccccceEEEechHHHHhhHHHHHHHHHHHHccCCcchhhhhchhhhhhccCcEEEcCCccc
Q 010099          379 SLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWA  458 (518)
Q Consensus       379 ~~~~~~~yl~~~~~~~~~~yfNsGVlLiNL~~WR~~nit~~~~~~l~~~~~~~~~~dQd~Ln~~li~f~~~i~~Lp~~WN  458 (518)
                      ..  ...+....++.+..+||||||||||+++||+.++++++++++++......++|||+||   .+|.|++..||.+||
T Consensus       134 ~~--~~~~~~~~~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN---~~f~~~~~~L~~~~N  208 (282)
T d1ga8a_         134 ER--QEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILN---GLFKGGVCYANSRFN  208 (282)
T ss_dssp             HT--STTHHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSTHHHHHH---HHHTTSEEEECGGGS
T ss_pred             hh--hhhhHHHhCCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCcccCchhHHH---HHhcCCEEeCCHHHe
Confidence            21  1122233456667899999999999999999999999999999877777899999999   689999999999999


Q ss_pred             ccCCCCCC--------CCC------HhhhcCCEEEEecCCCCCcccCCccchHHHHHHHHhhC
Q 010099          459 LSGLGHDY--------GLN------IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQE  507 (518)
Q Consensus       459 ~~~lg~~~--------~~~------~~~~~~~~IIHY~G~~KPW~~~~~~~y~~~W~~Y~~~s  507 (518)
                      ++..++..        ...      .+...+++||||+|+.|||...+.+.+...|++|+...
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~~~~~~~~~  271 (282)
T d1ga8a_         209 FMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSL  271 (282)
T ss_dssp             BCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHHHHHHHTTC
T ss_pred             eccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHHHHHHHHhh
Confidence            87432211        000      23457899999999999999988889999999998774
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure