Citrus Sinensis ID: 010114

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHccccEEEEEEcccccccccccccccHHHHHHcccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHcEEcccccccEEEEccccccccccHHHHcccccccEEEEEcccccccccccHHHHccccEEEEcHHHHHHHHccccccccccccEEccccccccccHHHHHHHHHccccccccccccHHccccccccccccccccccccccccccccEEEEccccccccccccEEEEEEEcccccHHcccccccccHHHHHHccccccccEEEEccccEEEcccccEEEEccccEEEEcccccccHHHHHHHHcccccccEEEEEEccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccEEEcccccccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHcccEEEEEEccccccccEEccHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHcccccccccccccccccccccEEEEEEcccccccccEEEcccHHHHHEHHcEEEEccccccEEEEEccccEEccEEEEEcccccccEEEEEccccccHHHHHHHHHcccEEEEccHHHHHHHHHccccccccHHHHHHcccccccccHHHHHHHHHHHccccEEEEEEEcccccEEEccccccccccccccccccccEEEEEcccccccccccccccEEEEEcccccHHHHHHcccHHHHHHHccccccccEEEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHHHccHHHHHHHEEccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccHEEEcccccccccHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MTYKELREQVMLVANALDTMFskgdaiaidmpMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKakgiftqdfilrggrkfplyskvlgaaplkaivlpaigndvgiplreqdlswkdflssvdyhprpnyyspvynpvDAVVNILfssgttgepkaipwtqlssirctaegwahidlkvgdvycwptnlgwvmgPVILFSSFLNGATLAlyqgsplersfgkfvqdaGVTVLGTVPSLVKAWRntnclegldwtkirsfastgetsnvdddlwLSSKAWYNAIIEScggtelssAYIQgsllqpqafgafSTATMTAGLVIldecgvpypddqpcvgevglfplylgasdrllnadheevyfrgmpmykgmclrrhgdiiKRTVGGYIIVqgraddtmnlggiktssVEIERVCDQADESILETAAisvspagggpEVLVIFVVLkkgftsqpdKLKMIFSKAIQSKLNPLFKVSLVkvvpefprtaSNKLLRRVLRDQIKHELSVRSRI
Flexible Loop (DISEMBL)
MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRlrvskakgiftqdfilrggRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGtvpslvkawrntnclegldwTKIRSfastgetsnvdddLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVqgraddtmnlggIKTSSVEIERVCDQADESILETAAisvspagggPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVkvvpefprtasnkllrrvlrdqikhelsvrsri
Low Complexity Region (SEG)
MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI
Disordered region (IsUnstruct)
********QVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR*************
Disordered Region (DISOPRED)
MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE*******
Disordered Region (DISEMBL)
MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH********
Disordered Region (DISPRO)
MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	518	2.2.26 [Sep-21-2011]
Q84P17	727	Probable acyl-activating	yes	no	1.0	0.712	0.750	0.0
F4KBF3	721	Probable acyl-activating	no	no	0.982	0.705	0.563	1e-164
A1U2S9	649	Acetyl-coenzyme A synthet	yes	no	0.920	0.734	0.267	2e-36
Q88EH6	653	Acetyl-coenzyme A synthet	yes	no	0.922	0.732	0.268	2e-35
A8FUF1	650	Acetyl-coenzyme A synthet	yes	no	0.951	0.758	0.264	2e-34
Q8Z1R0	652	Acetyl-coenzyme A synthet	N/A	no	0.940	0.746	0.269	2e-34
A9KY56	650	Acetyl-coenzyme A synthet	yes	no	0.951	0.758	0.255	4e-34
Q54Z60	674	Acetyl-coenzyme A synthet	yes	no	0.961	0.738	0.273	6e-34
A3QD52	650	Acetyl-coenzyme A synthet	yes	no	0.945	0.753	0.25	7e-34
A6WM52	650	Acetyl-coenzyme A synthet	yes	no	0.951	0.758	0.255	1e-33

>sp|Q84P17|AEE18_ARATH Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/521 (75%), Positives = 445/521 (85%), Gaps = 3/521 (0%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           MT KELREQVMLVANA+   F KGD IAIDMPMTV AVIIYLAIILAG +VVSIADSFAA
Sbjct: 207 MTIKELREQVMLVANAISGSFEKGDTIAIDMPMTVDAVIIYLAIILAGCIVVSIADSFAA 266

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EIATRL++SKAKGIFTQD+ILRGGR+FPLYS+V+ AAP K IVLPA G ++ + LREQD
Sbjct: 267 KEIATRLKISKAKGIFTQDYILRGGRRFPLYSRVVEAAPSKVIVLPASGTELHVQLREQD 326

Query: 121 LSWKDFLSSVDYHPR-PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
           +SW DFLS+   H    NYY P+Y PV++V+NILFSSGTTGEPKAIPWTQLS IR   +G
Sbjct: 327 VSWMDFLSNAKPHSSGENYYRPIYLPVESVINILFSSGTTGEPKAIPWTQLSPIRSACDG 386

Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239
           WAH+D++VG  YCWPTNLGWVMGP ++FS FL GATLALY GSPL R FGKFVQDAGVTV
Sbjct: 387 WAHLDVQVGHTYCWPTNLGWVMGPTLMFSCFLTGATLALYSGSPLGRGFGKFVQDAGVTV 446

Query: 240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 299
           LGTVPSLVK W+ TNC+EGL+WTKI+ FA+TGE SNVDD LWLSSKA Y  +IE CGGTE
Sbjct: 447 LGTVPSLVKTWKRTNCMEGLNWTKIKFFATTGEASNVDDVLWLSSKADYKPVIECCGGTE 506

Query: 300 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDR 359
           L+S+YI GS LQPQAFGAFST +MT  ++I DE GVPYPDDQPC GEVGLFP +LGA+DR
Sbjct: 507 LASSYIIGSPLQPQAFGAFSTPSMTTRIIIFDENGVPYPDDQPCTGEVGLFPQHLGATDR 566

Query: 360 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 419
           LLNA+H+EVYF+GMPMYK   LRRHGDI+KRTVGGY  VQGRADDTMNLGGIKTSS+EIE
Sbjct: 567 LLNANHDEVYFKGMPMYKETRLRRHGDIVKRTVGGYYNVQGRADDTMNLGGIKTSSIEIE 626

Query: 420 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP-DKLKMIFSKAIQSKLNP 478
           RVCDQADE I ETAA++++P  GGPE+LVIF VLK+GF  Q  ++LKM FS+ IQ  LNP
Sbjct: 627 RVCDQADECISETAAVTLTPPNGGPELLVIFAVLKEGFKQQSGEELKMKFSRTIQKDLNP 686

Query: 479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE-LSVRSRI 518
           LFKVS VK+VPEFPRTAS+KLLRRVLRDQIK E LS+RSRI
Sbjct: 687 LFKVSFVKIVPEFPRTASSKLLRRVLRDQIKQELLSLRSRI 727

May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|F4KBF3|AAE17_ARATH Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1

 Score =  577 bits (1487), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 289/513 (56%), Positives = 360/513 (70%), Gaps = 4/513 (0%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           MT  ELR QV L A+AL  +   +  AIA+DMPM V +VIIYLAI+LAG+VVVSIADSF+
Sbjct: 203 MTLLELRSQVWLAAHALSALGLEEESAIAVDMPMNVESVIIYLAIVLAGHVVVSIADSFS 262

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            REI+TRL++SKAK IFTQD I+RG +  PLY +V+ A    AIV+PA G+   + LRE+
Sbjct: 263 PREISTRLKISKAKAIFTQDVIIRGDKSIPLYRRVVDAEAPLAIVVPARGSSCRMKLREK 322

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
           DLSW +FL +   + R   Y     P  A  NILFSSGTTGEPKAIPWT +S ++  A+ 
Sbjct: 323 DLSWNNFLGNA-RNLRGVEYVAAEKPAGAYTNILFSSGTTGEPKAIPWTNISPLKSAADA 381

Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239
           W H+D++ GDV  WPTNLGW+MGP ++++S +NGA + LY GSPL  +F KFVQDA V+V
Sbjct: 382 WCHLDVQRGDVVAWPTNLGWMMGPWLVYASLINGACMGLYNGSPLGPTFAKFVQDAEVSV 441

Query: 240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 299
           LG +PS+V+ W+N+N   G DW++IR F STGE SN+D+ LWL  +A Y  +IE CGGTE
Sbjct: 442 LGVIPSIVRTWQNSNSTSGYDWSRIRCFGSTGEASNIDEYLWLMGRAHYKPVIEYCGGTE 501

Query: 300 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDR 359
           +  ++I GSLLQPQ+  AFSTA M   L ILDE   P P     VGE+ L P   GAS  
Sbjct: 502 IGGSFISGSLLQPQSLAAFSTAAMGCKLFILDEDSNPIPPYAAGVGELALCPHMFGASST 561

Query: 360 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 419
           LLN +H +VYF+GMP ++G  LRRHGD+ +RT  GY    GRADDTMNLGGIK  S+EIE
Sbjct: 562 LLNGNHFKVYFQGMPTFQGQILRRHGDLFERTSKGYYRAHGRADDTMNLGGIKVGSIEIE 621

Query: 420 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD--KLKMIFSKAIQSKLN 477
           RVC+  D+S+LETAAI V P  GGPE LVI VV K    S PD   LK  F+  IQ KLN
Sbjct: 622 RVCNSVDDSVLETAAIGVPPPSGGPEQLVIAVVFKSPEFSNPDLNLLKKSFNSEIQKKLN 681

Query: 478 PLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 510
           PLFKVS V  +P  PRTA+NK++RRVLR Q+  
Sbjct: 682 PLFKVSSVVTLPSLPRTATNKVMRRVLRQQLTQ 714

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|A1U2S9|ACSA_MARAV Acetyl-coenzyme A synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=acsA PE=3 SV=1

 Score =  154 bits (389), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 144/538 (26%), Positives = 238/538 (44%), Gaps = 61/538 (11%)

Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY+EL E+    AN L D    KGD + I MPM V   +  LA    G +   +   F+
Sbjct: 108 VTYRELYEETCKFANVLKDQGVKKGDVVTIYMPMIVETAVAMLACARIGAIHSVVFGGFS 167

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-------KAIVLPAIGNDV 112
              +A R+   K++ + T D  LRGGR  PL   V  A          K IV+   GND 
Sbjct: 168 PEALAARIVNGKSRFVITADEGLRGGRAIPLKKNVDSALKHEDDAKVDKVIVVSRTGNDQ 227

Query: 113 GIPLRE-QDLSWKDFL--SSVDYHPRP-NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 168
            +P  E +DL ++D +  +S +  P P N   P++        +L++SG+TG PK +  T
Sbjct: 228 -VPWTEGRDLRYEDLMKNASAECQPEPMNAEDPLF--------MLYTSGSTGAPKGVLHT 278

Query: 169 QLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQG---SP 223
               +   +    ++ D   GDVY    + GWV G   IL+    NGA   L++G    P
Sbjct: 279 TGGYMVYASMTHQYVFDYHDGDVYWCTADFGWVTGHSYILYGPLANGAITLLFEGVPNYP 338

Query: 224 LERSFGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLW 281
                G+ V    V +L T P+ ++A   +  +C++G     ++   S GE   ++ + W
Sbjct: 339 DSSRMGQVVDKHKVNILYTAPTAIRALMAQGESCMDGTTRGSLKLLGSVGEP--INPEAW 396

Query: 282 LSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 341
                WY+ +I +      S   I  +  Q +  G   +    A  +      +P+   Q
Sbjct: 397 ----EWYHRVIGN------SKCPIVDTWWQTETGGILISPLPGAVDLKPGSATLPFFGVQ 446

Query: 342 PCV-------------GEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 388
           P +             G + +   + G   R +  DHE         YKGM     GD  
Sbjct: 447 PALVDNEGNILEGKTEGNLVILDSWPGQM-RTIYGDHERFVQTYFSTYKGMYFT--GDGA 503

Query: 389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 448
           +R   GY  + GR DD +N+ G +  + E+E      D+  +  AA+   P     + + 
Sbjct: 504 RRDEDGYYWITGRVDDVLNVSGHRLGTAEVESALVAHDK--VAEAAVVGYPHDIKGQGIY 561

Query: 449 IFVVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
           ++V L +G   +P D+LK    + ++ ++ P+    +++  P  P+T S K++RR+LR
Sbjct: 562 VYVTLVQG--EEPSDELKKELVQWVRKEIGPIASPDVIQWAPGLPKTRSGKIMRRILR 617

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q88EH6|ACSA1_PSEPK Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain KT2440) GN=acsA1 PE=3 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 144/536 (26%), Positives = 236/536 (44%), Gaps = 58/536 (10%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY+EL EQV   ANAL      +GD + I MPM   AV+  LA    G +   +   F+
Sbjct: 108 ITYRELHEQVCKFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACARIGAIHSVVFGGFS 167

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV-------LGAAPLKAIVLPAIGNDV 112
              +A R+   K+K + T D  +RGGR+ PL + V         ++  K IV    G D+
Sbjct: 168 PEALAGRIIDCKSKVVITADEGVRGGRRTPLKANVDLALTNPETSSVQKIIVCKRTGGDI 227

Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
               + +D+ ++D +     H  P          +  + IL++SG+TG+PK +  T    
Sbjct: 228 AW-HQHRDIWYEDLMKVASSHCAPKEMG-----AEEALFILYTSGSTGKPKGVLHTTGGY 281

Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP----LER 226
           +   A     + D + G+VY    ++GWV G   I++    NGAT  L++G P    + R
Sbjct: 282 LVYAALTHERVFDYRPGEVYWCTADVGWVTGHSYIVYGPLANGATTLLFEGVPNYPDITR 341

Query: 227 SFGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 284
              K V    V +L T P+ ++A        +EG D + +R   S GE  N +   W   
Sbjct: 342 -VSKIVDKHKVNILYTAPTAIRAMMAEGQAAVEGADGSSLRLLGSVGEPINPEAWNWYYK 400

Query: 285 KAWYN--AIIESCGGTELSSAYIQ----------GSLLQPQAFGAFSTATMTAGLVILDE 332
                   I+++   TE     I           GS  +P  FG         G +I   
Sbjct: 401 TVGKERCPIVDTWWQTETGGILISPLPGATGLKPGSATRP-FFGVVPALVDNLGNLI--- 456

Query: 333 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYKGMCLRRHGDIIK 389
                  D    G + +   + G S R L  DH+   + YF+    ++GM     GD  +
Sbjct: 457 -------DGAAEGNLVILDSWPGQS-RSLYGDHDRFVDTYFK---TFRGMYFT--GDGAR 503

Query: 390 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 449
           R   GY  + GR DD +N+ G +  + EIE     A   + E A + V P     + + +
Sbjct: 504 RDEDGYYWITGRVDDVLNVSGHRMGTAEIESAM-VAHSKVAEAAVVGV-PHDIKGQGIYV 561

Query: 450 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
           +V L  G  +  ++L++     ++ ++ P+    +++  P  P+T S K++RR+LR
Sbjct: 562 YVTLNAGIEAS-EQLRLELKNWVRKEIGPIASPDVIQWAPGLPKTRSGKIMRRILR 616

Pseudomonas putida (strain KT2440) (taxid: 160488)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A8FUF1|ACSA_SHESH Acetyl-coenzyme A synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=acsA PE=3 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 142/537 (26%), Positives = 234/537 (43%), Gaps = 44/537 (8%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL   V   ANAL +    +GD + + MPM   A ++ LA    G V   +   F+
Sbjct: 108 ITYGELHSDVCKFANALRSQGVRRGDIVTVYMPMVPEAAVVMLACARIGAVHSVVFGGFS 167

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-------KAIVLPAIGNDV 112
              IA+R+   K+K I T D  +RGGR  PL + +  A          K IVL   G DV
Sbjct: 168 PDSIASRVIDGKSKVIITADEGVRGGRIIPLKANIDEALSHPDVDCVEKVIVLERTGGDV 227

Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
              +  +D+ W+  + +   H  P          +  + +L++SG+TG PK +  T    
Sbjct: 228 NW-VEGRDIKWESLMDTASEHCIPEEMG-----AEDPLFLLYTSGSTGNPKGVLHTTGGY 281

Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQG---SPLERS 227
           +   A    ++ D K G+VY    ++GW+ G   +++    NGAT+ +++G    P    
Sbjct: 282 MVYAAMTHEYVFDYKDGEVYWCTADVGWITGHSYMVYGPLANGATVLIHEGVPNYPTPAR 341

Query: 228 FGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
            G+ V    V +L T P+L++A            D + +R   S GE   ++ + W    
Sbjct: 342 LGEMVDRHKVNILYTAPTLIRALMAEGKEQFADFDGSSLRIMGSVGEP--INPEAW---- 395

Query: 286 AWYNAII--ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVP 336
            WYN +I  E C   +       G +L     GA  T   +A          ++D  G  
Sbjct: 396 RWYNEVIGHEHCPIVDTWWQTETGGILISPLPGATDTKPGSATRPFFGVQPALVDNMGNI 455

Query: 337 YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 396
              D    G + +   + G   R +  DH+         ++GM     GD  KR   GY 
Sbjct: 456 I--DGATEGNLVILDSWPGQM-RTVFGDHDRFALTYFKTFRGMYFT--GDGAKRDEDGYY 510

Query: 397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 456
            + GR DD +N+ G +  + E+E     A E + E A +   P     + +  +V L KG
Sbjct: 511 WITGRVDDVINVSGHRLGTAEVESAL-VAHEHVAEAAVVGY-PHDIKGQGIYAYVTLTKG 568

Query: 457 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513
            T + ++L+    K ++ ++  L    L++     P+T S K++RR LR    +E++
Sbjct: 569 -TIETEELRQELRKWVRKEIGALATPDLIQWAGGLPKTRSGKIMRRFLRKIAANEVT 624

Shewanella sediminis (strain HAW-EB3) (taxid: 425104)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8Z1R0|ACSA_SALTI Acetyl-coenzyme A synthetase OS=Salmonella typhi GN=acs PE=3 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 142/527 (26%), Positives = 221/527 (41%), Gaps = 40/527 (7%)

Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL   V   AN L D    KGD +AI MPM   A +  LA    G V   I   F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
              IA R+  S ++ + T D  +R GR  PL   V  A       +    IVL   GND+
Sbjct: 168 PEAIAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGNDI 227

Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
                 +DL W+D +        P +     N  D +  IL++SG+TG+PK +  T    
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281

Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
           +   A  + ++ D   GD+Y    ++GWV G   +L+     GAT  +++G P   +  +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341

Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
             Q      V +L T P+ ++A        +EG D + +R   S GE  N +   W    
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398

Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
            W     E C   +       G  +     GA      +A          ++D  G  +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455

Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
            +    G + +   + G + R L  DHE         +K M     GD  +R   GY  +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512

Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
            GR DD +N+ G +  + EIE     A   I E A + +  A  G + +  +V L  G  
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570

Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             P+ L       ++ ++ PL    ++      P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis.

Salmonella typhi (taxid: 90370)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A9KY56|ACSA_SHEB9 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS195) GN=acsA PE=3 SV=1

 Score =  146 bits (368), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 137/537 (25%), Positives = 235/537 (43%), Gaps = 44/537 (8%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL  +V   ANAL +    +GD + I MPM   A +  LA    G V   +   F+
Sbjct: 108 ITYGELHAEVCKFANALRSQGVRRGDIVTIYMPMVPEAAVAMLACARIGAVHSVVFGGFS 167

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-------LKAIVLPAIGNDV 112
              IA+R+   K+K I T D  +RGGR  PL   +  A          K IVL   G  V
Sbjct: 168 PDSIASRVIDGKSKVIITSDEGMRGGRAIPLKRNIDDALKNPDVTTVEKVIVLKRTGGIV 227

Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
              + ++D+ W   + +        Y  P     +A + +L++SG+TG PK +  T    
Sbjct: 228 DW-VEDRDVWWHSLMETAS-----EYCQPEEMDAEAPLFLLYTSGSTGNPKGVLHTTGGY 281

Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERS--- 227
           +   +    ++ D K G+VY    ++GW+ G   +++    NGAT+ +++G P   S   
Sbjct: 282 MVYASMTHEYVFDYKAGEVYWCTADVGWITGHSYMVYGPLANGATVLIHEGVPNHPSPAR 341

Query: 228 FGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
            G+ +    V++L T P+L++A         +  D + +R   S GE   ++ + W    
Sbjct: 342 LGEMIDRHKVSILYTAPTLIRALMAEGKQHFDKFDGSSLRIMGSVGEP--INPEAW---- 395

Query: 286 AWYNAII--ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVP 336
            WY+ +I  E C   +       G +L     GA  T   +A          ++D  G  
Sbjct: 396 RWYHEVIGHEHCPIVDTWWQTETGGILITPLPGATDTKPGSATRPFFGVQPALVDNMGNI 455

Query: 337 YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 396
              +    G + L   + G   R +  DHE         ++GM     GD  +R   GY 
Sbjct: 456 LEGENE--GNLVLLDSWPGQM-RTVYGDHERFVLTYFKTFRGMYFT--GDGARRDEDGYY 510

Query: 397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 456
            + GR DD +N+ G +  + E+E         ++  AA+   P     + +  +V L +G
Sbjct: 511 WITGRVDDVINVSGHRLGTAEVESAL--VSHELVAEAAVVGYPHDIKGQGIYAYVTLTRG 568

Query: 457 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513
            T + ++L+    + ++ ++  L    L++     P+T S K++RR LR    +E++
Sbjct: 569 -TEETEELRQELRQWVRKEIGALATPDLIQWATGLPKTRSGKIMRRFLRKIAANEVT 624

Shewanella baltica (strain OS195) (taxid: 399599)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q54Z60|ACSA_DICDI Acetyl-coenzyme A synthetase OS=Dictyostelium discoideum GN=acsA PE=3 SV=1

 Score =  145 bits (367), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 149/545 (27%), Positives = 244/545 (44%), Gaps = 47/545 (8%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY+E+ E+V  ++N L ++   KGD +AI +P T  A+   LA    G +   I   F 
Sbjct: 118 VTYREMFEEVCRLSNLLISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFG 177

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK---VLGAAPLKAIVLPAIGNDVGIPL 116
              I +R+  +K + I T D  LRGGR  PL  K   V+    L   VL  +  + G P 
Sbjct: 178 YESIVSRVHDAKCRVIITADEGLRGGRYIPLKEKIDQVVQHCKLVQHVL--VFKNTGRPT 235

Query: 117 REQDLS---WKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI 173
              + S   W D  + +D+ P   Y  PV+   +  + IL++SG+TG PK +  TQ   +
Sbjct: 236 ITFNPSIDIWAD-EAMLDHRP---YCPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYL 291

Query: 174 RCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF 231
              A    ++ D    DVY    ++GW+ G   I++    NGAT  +++G+PL  +  ++
Sbjct: 292 LYAAMTHRYVFDYHDSDVYACMADVGWITGHSYIVYGPLANGATTFIFEGTPLYPTPARY 351

Query: 232 ---VQDAGVTVLGTVPSLVKAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 286
              VQ   +T   T P+ +++      +  +  D + +R   S GE  N +   W ++  
Sbjct: 352 WEMVQRHKITQFYTAPTAIRSLMKFPISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNV 411

Query: 287 WYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILD----EC 333
                AI+++   TE       G L+ P   G  ST   +A        L +LD    E 
Sbjct: 412 GEGRCAIVDTYWQTESG-----GHLITPLP-GVTSTKPGSATKPFFGIELQVLDSKTGER 465

Query: 334 GVPYPDDQPCVGEVGLFPL---YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 390
               PD   C    G+  +   + G + R +   H       M  YKG      GD +K 
Sbjct: 466 LYINPDINGCKEISGVLAISKPWPGIA-RSVYRSHGRYLQTYMTQYKGHYFT--GDGVKL 522

Query: 391 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 450
              GY  ++GR DD +N+ G +  + E+E        SI   AA+   P     + ++ F
Sbjct: 523 DSDGYYWIEGRVDDVINVSGHRLGTAELESAL--VGCSICAEAAVVGYPHDIKGQGILAF 580

Query: 451 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 510
             LK+G+      + M+  K +++ + P     ++ + P  P+T S K++RR+LR    H
Sbjct: 581 CTLKEGYQEDESNVIMMLKKEVRNVIGPFATPDVIVITPSLPKTRSGKIMRRILRKIGCH 640

Query: 511 ELSVR 515
           E S  
Sbjct: 641 ESSAE 645

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A3QD52|ACSA_SHELP Acetyl-coenzyme A synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=acsA PE=3 SV=1

 Score =  145 bits (366), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 135/540 (25%), Positives = 237/540 (43%), Gaps = 50/540 (9%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL  +V   ANAL +    +GD + + MPM   A ++ LA    G +   +   F+
Sbjct: 108 LTYGELHTEVCKFANALRSQGVRRGDVVTVYMPMVPEAAVVMLACARIGAIHSVVFGGFS 167

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-------KAIVLPAIGNDV 112
              IA+R+   K+K + T D  +RGGR  PL + +  A          K IVL   GN V
Sbjct: 168 PDSIASRVIDGKSKVVITADEGVRGGRTIPLKANIDEALSHPDVTCVEKVIVLERTGNPV 227

Query: 113 GIPLREQDLSWKDFLSSVDYH---PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ 169
              +  +D+ W   + +   H          P++        +L++SG+TG PK +  T 
Sbjct: 228 NW-VEGRDIKWASLMETASEHCVAEEMGAEDPLF--------LLYTSGSTGNPKGVLHTT 278

Query: 170 LSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQG---SPL 224
              +   +    ++ D K G++Y    ++GW+ G   +++    NGAT+ +++G    P 
Sbjct: 279 GGYLVYASMTHEYVFDYKEGEIYWCTADVGWITGHSYMVYGPLANGATILIHEGIPNYPT 338

Query: 225 ERSFGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWL 282
               G+ +    V +L T P+L++A         +G D + +R   S GE   ++ + W 
Sbjct: 339 PARLGEMIDRHKVNILYTAPTLIRALMAEGKEQFDGFDGSSLRIMGSVGEP--INPEAW- 395

Query: 283 SSKAWYNAII--ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDEC 333
               WY+ +I  E+C   +       G +L     GA  T   +A          ++D  
Sbjct: 396 ---RWYHEVIGHENCPIVDTWWQTETGGILISPLPGATDTKPGSATRPFFGVQPALVDNM 452

Query: 334 GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 393
           G     D    G + +   + G   R +  DH+         ++GM     GD  +R   
Sbjct: 453 GNII--DGAAEGNLVILDSWPGQM-RTVYGDHDRFALTYFKTFRGMYFT--GDGARRDED 507

Query: 394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 453
           GY  + GR DD +N+ G +  + E+E     A E + E A +   P     + +  +V L
Sbjct: 508 GYYWITGRVDDVINVSGHRLGTAEVESAL-VAHEHVAEAAVVGY-PHDIKGQGIYAYVTL 565

Query: 454 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513
            KG T + ++L+    + ++ ++  L    L++     P+T S K++RR LR    +E++
Sbjct: 566 TKG-TQESEELRQELRQWVRKEIGALATPDLIQWAGGLPKTRSGKIMRRFLRKIAANEVT 624

Shewanella loihica (strain ATCC BAA-1088 / PV-4) (taxid: 323850)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A6WM52|ACSA_SHEB8 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS185) GN=acsA PE=3 SV=1

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 137/537 (25%), Positives = 233/537 (43%), Gaps = 44/537 (8%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL   V   ANAL +    +GD + I MPM   A +  LA    G V   +   F+
Sbjct: 108 ITYGELHADVCKFANALRSQGVRRGDIVTIYMPMVPEAAVAMLACARIGAVHSVVFGGFS 167

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-------LKAIVLPAIGNDV 112
              IA+R+   K+K I T D  +RGGR  PL   +  A          K IVL   G  V
Sbjct: 168 PDSIASRVIDGKSKVIITSDEGMRGGRAIPLKRNIDDALKNPDVTTVEKVIVLKRTGGKV 227

Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
              +  +D+ W   + +        Y  P     +A + +L++SG+TG PK +  T    
Sbjct: 228 DW-VEGRDVWWHSLMETAS-----EYCQPEEMDAEAPLFLLYTSGSTGNPKGVLHTTGGY 281

Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERS--- 227
           +   +    ++ D K G+VY    ++GW+ G   +++    NGAT+ +++G P   S   
Sbjct: 282 MVYASMTHEYVFDYKAGEVYWCTADVGWITGHSYMVYGPLANGATVLIHEGVPNHPSPAR 341

Query: 228 FGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
            G+ +    V++L T P+L++A         +  D + +R   S GE   ++ + W    
Sbjct: 342 LGEMIDRHKVSILYTAPTLIRALMAEGKQHFDKFDGSSLRIMGSVGEP--INPEAW---- 395

Query: 286 AWYNAII--ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVP 336
            WY+ +I  E C   +       G +L     GA  T   +A          ++D  G  
Sbjct: 396 RWYHEVIGHEHCPIVDTWWQTETGGILITPLPGATDTKPGSATRPFFGVQPALVDNMGNI 455

Query: 337 YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 396
              +    G + L   + G   R +  DHE         ++GM     GD  +R   GY 
Sbjct: 456 LEGENE--GNLVLLDSWPGQM-RTVYGDHERFVLTYFKTFRGMYFT--GDGARRDEDGYY 510

Query: 397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 456
            + GR DD +N+ G +  + E+E         ++  AA+   P     + +  +V L +G
Sbjct: 511 WITGRVDDVINVSGHRLGTAEVESAL--VSHELVAEAAVVGYPHDIKGQGIYAYVTLTRG 568

Query: 457 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513
            T + ++L+    + ++ ++  L    L++     P+T S K++RR LR    +E++
Sbjct: 569 -TEETEELRQELRQWVRKEIGALATPDLIQWATGLPKTRSGKIMRRFLRKIAANEVT 624

Shewanella baltica (strain OS185) (taxid: 402882)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
225435726	727	PREDICTED: acetyl-coenzyme A synthetase	1.0	0.712	0.812	0.0
297746452	685	unnamed protein product [Vitis vinifera]	1.0	0.756	0.805	0.0
224052966	526	predicted protein [Populus trichocarpa]	1.0	0.984	0.801	0.0
255572274	625	acetyl-CoA synthetase, putative [Ricinus	1.0	0.828	0.795	0.0
380042388	727	acyl-activating enzyme 14 [Cannabis sati	0.996	0.709	0.795	0.0
357518845	770	Acetyl-coenzyme A synthetase [Medicago t	1.0	0.672	0.777	0.0
356525251	728	PREDICTED: acetyl-coenzyme A synthetase-	1.0	0.711	0.772	0.0
224052960	518	predicted protein [Populus trichocarpa]	1.0	1.0	0.739	0.0
380042386	715	acyl-activating enzyme 13 [Cannabis sati	0.996	0.721	0.754	0.0
380042368	723	acyl-activating enzyme 4, partial [Canna	0.994	0.712	0.768	0.0

>gi|225435726|ref|XP_002285701.1| PREDICTED: acetyl-coenzyme A synthetase [Vitis vinifera] gi|297746451|emb|CBI16507.3| unnamed protein product [Vitis vinifera]

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/518 (81%), Positives = 468/518 (90%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           +T KELREQVM+VAN LD  FSKGDAIAIDMPMTV AVIIYLAI+LAG+VVVSIADSFAA
Sbjct: 210 LTLKELREQVMMVANVLDATFSKGDAIAIDMPMTVHAVIIYLAIVLAGFVVVSIADSFAA 269

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EIATRL VSKAKGIFTQDFI+RGGRKFPLYS+V+ AAP K IVLPAIG DV + LREQD
Sbjct: 270 KEIATRLHVSKAKGIFTQDFIVRGGRKFPLYSRVVEAAPHKVIVLPAIGTDVDVQLREQD 329

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
           LSWKDFLS  D+ PRPN YSPVY P+DAV NILFSSGTTG+PKAIPWTQ+S IR +A+ W
Sbjct: 330 LSWKDFLSHADHLPRPNNYSPVYQPIDAVTNILFSSGTTGDPKAIPWTQVSPIRSSADAW 389

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240
           A I+++VGDV+CWPTNLGWVMGP IL++SFL GA LALY GSPL+R FGKFVQDAGVTVL
Sbjct: 390 AQINIQVGDVFCWPTNLGWVMGPTILYASFLTGAALALYHGSPLDRGFGKFVQDAGVTVL 449

Query: 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 300
           GTVPSLVK W+NT C+EGLDWTKI+SFASTGETSNVDDDLWLSS+A+Y  IIE CGGTEL
Sbjct: 450 GTVPSLVKTWKNTGCMEGLDWTKIKSFASTGETSNVDDDLWLSSRAYYKPIIECCGGTEL 509

Query: 301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
           +S+YIQGS+LQPQAFG FSTA MT G VILDE GVPYPDDQPCVGEVGLFPL +GA+D L
Sbjct: 510 ASSYIQGSVLQPQAFGTFSTAAMTTGFVILDENGVPYPDDQPCVGEVGLFPLIMGATDWL 569

Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           LNADHEEVYF+GMPMYKGM LRRHGDIIKRTVGGY +VQGRADDTMNLGGIKTSSVEIER
Sbjct: 570 LNADHEEVYFKGMPMYKGMHLRRHGDIIKRTVGGYFVVQGRADDTMNLGGIKTSSVEIER 629

Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 480
           VCD+ADES+LE+AAIS +P  GGPE+LV+FVVLKKG+  +P++LKM FSKAIQ  LNPLF
Sbjct: 630 VCDKADESVLESAAISTAPLNGGPELLVVFVVLKKGYDCEPNELKMKFSKAIQRNLNPLF 689

Query: 481 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           KV+ VK+VPEFPRTASNK+LRRVLRDQIKHELSVRSRI
Sbjct: 690 KVNFVKIVPEFPRTASNKILRRVLRDQIKHELSVRSRI 727

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746452|emb|CBI16508.3| unnamed protein product [Vitis vinifera]

 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/518 (80%), Positives = 464/518 (89%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           MT KELREQVMLVANALD  F+KGDAIAIDMPMTV AVIIYLAI+LAG+VVVSIADSFAA
Sbjct: 168 MTLKELREQVMLVANALDATFTKGDAIAIDMPMTVYAVIIYLAIVLAGFVVVSIADSFAA 227

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EI TRLRVSKAKGIFTQDFI+R GRKFPLYS+V+ AAP K I+LPAIG DV + LREQD
Sbjct: 228 KEITTRLRVSKAKGIFTQDFIVRRGRKFPLYSRVVEAAPHKVILLPAIGKDVNVQLREQD 287

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
           LSWKDFLS  D+ PRPNYYSPVY P+DAV NILFSSGTTG+PKAIPWTQ+S IR  A+ W
Sbjct: 288 LSWKDFLSRADHLPRPNYYSPVYQPIDAVTNILFSSGTTGDPKAIPWTQVSPIRSAADAW 347

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240
           A  +++VGDV CWPTNLGW+MGP I+++SFL GA LALY GSPL+R FGKFVQDAGVT+L
Sbjct: 348 AQSNIQVGDVLCWPTNLGWMMGPFIIYASFLTGAALALYHGSPLDRGFGKFVQDAGVTIL 407

Query: 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 300
           GTVPSLVK W+NT C+EGLDWTKI+SFASTGETSNVDDDLWLSS+A Y  IIE CGGTEL
Sbjct: 408 GTVPSLVKTWKNTGCMEGLDWTKIKSFASTGETSNVDDDLWLSSRAHYKPIIECCGGTEL 467

Query: 301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
           +S+YIQGS+ QPQAFGAFS+  MT G VILDE GVPYPDDQPCVGEVGLFPL +GA+DRL
Sbjct: 468 ASSYIQGSMFQPQAFGAFSSTAMTTGFVILDENGVPYPDDQPCVGEVGLFPLIMGATDRL 527

Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           LNADHEEVYF+GMP+YKGM LR+HGDIIKRTVGGY +VQGRADDTMNLGGIKTSSVEIER
Sbjct: 528 LNADHEEVYFKGMPIYKGMHLRKHGDIIKRTVGGYFVVQGRADDTMNLGGIKTSSVEIER 587

Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 480
           VCD+ADESILE+AAIS +P  GGPE+LV+FVVLKKG+  +PD+LKM FSKAIQ  LNPLF
Sbjct: 588 VCDKADESILESAAISTAPLNGGPEMLVVFVVLKKGYNCEPDELKMKFSKAIQRNLNPLF 647

Query: 481 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           KVS VK+VPEFPRTASNK+LRRVLRDQIKHELSV SRI
Sbjct: 648 KVSFVKIVPEFPRTASNKILRRVLRDQIKHELSVWSRI 685

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052966|ref|XP_002297640.1| predicted protein [Populus trichocarpa] gi|222844898|gb|EEE82445.1| predicted protein [Populus trichocarpa]

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/518 (80%), Positives = 465/518 (89%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           +  KE REQVMLVANALDT F+KGDAIAIDMPMTV AVIIYLAI+LAG+VVVSIADSFAA
Sbjct: 9   LKLKEFREQVMLVANALDTTFTKGDAIAIDMPMTVNAVIIYLAIVLAGFVVVSIADSFAA 68

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EIATRLRVS AKGIFTQDFILRGGRKFPLYS+V+ A   KAIV+P IGNDVG+ LR QD
Sbjct: 69  KEIATRLRVSNAKGIFTQDFILRGGRKFPLYSRVVEANSCKAIVIPVIGNDVGLQLRNQD 128

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
            +W DFLSS  +  RPNYYSPVY PVD++ NILFSSGTTG+PKAI WT LS IRC+ +GW
Sbjct: 129 QTWIDFLSSYSFSDRPNYYSPVYQPVDSLTNILFSSGTTGDPKAIGWTHLSPIRCSHDGW 188

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240
           AH+D++ GDVYCWPTNLGWVMGP++L+S+FL GATLAL+ GSPL R FGKFVQDAGVTVL
Sbjct: 189 AHVDIQEGDVYCWPTNLGWVMGPILLYSTFLCGATLALFHGSPLSRGFGKFVQDAGVTVL 248

Query: 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 300
           GTVPS+VKAW++TNC+EGLDWTK++SF STGE SNVDDDLWLSS+A+Y  IIE CGGTEL
Sbjct: 249 GTVPSIVKAWKSTNCMEGLDWTKLKSFCSTGEASNVDDDLWLSSRAYYKPIIECCGGTEL 308

Query: 301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
           +S+YIQG  LQPQAFGAFSTA+MT G VILDE GV YPDD PCVGEVGL PL +GASDRL
Sbjct: 309 ASSYIQGCPLQPQAFGAFSTASMTTGFVILDENGVSYPDDMPCVGEVGLSPLLMGASDRL 368

Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           LNADH++VYF+GMPMYKGM LRRHGDIIKRTVGGY +VQGRADDTMNLGGIKTSSVEIER
Sbjct: 369 LNADHDKVYFKGMPMYKGMQLRRHGDIIKRTVGGYFVVQGRADDTMNLGGIKTSSVEIER 428

Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 480
           VCD+A+ESI+ETAAISV+P  GGPE+LVIFVVLKKGF  +PDKLKM FSKAIQ+ LNPLF
Sbjct: 429 VCDRAEESIMETAAISVAPVDGGPELLVIFVVLKKGFDGEPDKLKMKFSKAIQNNLNPLF 488

Query: 481 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           KVS VK+VPEFPRTASNKLLRRVLRDQ+KHELSVRS+I
Sbjct: 489 KVSFVKIVPEFPRTASNKLLRRVLRDQMKHELSVRSKI 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572274|ref|XP_002527076.1| acetyl-CoA synthetase, putative [Ricinus communis] gi|223533581|gb|EEF35320.1| acetyl-CoA synthetase, putative [Ricinus communis]

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/518 (79%), Positives = 465/518 (89%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           MT KELREQVMLVANALD +F+KGDAIAIDMPMTV AVIIYLAI+LAG VVVSIADSFAA
Sbjct: 108 MTLKELREQVMLVANALDAVFTKGDAIAIDMPMTVNAVIIYLAIVLAGCVVVSIADSFAA 167

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EIA+RLR+S AK IFTQDFI+RGGRKFPLYS+V+ AAP KAIVL  IGNDV IPLR+QD
Sbjct: 168 KEIASRLRISNAKAIFTQDFIVRGGRKFPLYSRVVEAAPHKAIVLSVIGNDVSIPLRQQD 227

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
           LSWKDFLSSV + PR NY+SPVY PVD++ NILFSSGTTGEPKAI WTQLS IR  ++ W
Sbjct: 228 LSWKDFLSSVIHLPRRNYFSPVYQPVDSMTNILFSSGTTGEPKAIVWTQLSPIRSASDAW 287

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240
           AH+D++ GDVYCWPTNLGWVMGP++L+S FL GATLAL+ GSPL R FGKF+Q+AGVT+L
Sbjct: 288 AHLDVQAGDVYCWPTNLGWVMGPILLYSCFLTGATLALFHGSPLGREFGKFIQNAGVTIL 347

Query: 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 300
           GTVPSLVKAW++TNC+EGLDWTKI+SF STGE SNVDDDLWLSS+ +Y  IIE CGGTEL
Sbjct: 348 GTVPSLVKAWKSTNCMEGLDWTKIKSFGSTGEASNVDDDLWLSSRTYYKPIIECCGGTEL 407

Query: 301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
           +S+YIQG  LQPQAFGAFSTA+MT G VILDE GVPYPD QPC GEVGLFP+YLGAS+RL
Sbjct: 408 ASSYIQGCPLQPQAFGAFSTASMTTGFVILDENGVPYPDGQPCSGEVGLFPVYLGASERL 467

Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           LNADH EVYF+GMPM+KGMCLRRHGDI+KRTV GY IVQGRADDTMNLGGIKTSSVEIE 
Sbjct: 468 LNADHYEVYFKGMPMFKGMCLRRHGDILKRTVRGYFIVQGRADDTMNLGGIKTSSVEIEH 527

Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 480
           VCD+AD+SI+ETAAISV+P  GGPE+LVIFVVLK G   +PDKLKM FSKA+Q+ LNPLF
Sbjct: 528 VCDRADKSIIETAAISVAPVDGGPELLVIFVVLKNGSNGEPDKLKMKFSKALQTNLNPLF 587

Query: 481 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           KVS VK+VPEFPRTASNKLLRRVLRDQ+KHELS++S+I
Sbjct: 588 KVSFVKIVPEFPRTASNKLLRRVLRDQMKHELSIQSKI 625

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042388|gb|AFD33358.1| acyl-activating enzyme 14 [Cannabis sativa]

 Score =  853 bits (2205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/518 (79%), Positives = 456/518 (88%), Gaps = 2/518 (0%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           +T K+LREQV+ VA ALD MFSKGDAIAIDMPMT  AVIIYLAIIL+G VVVSIADSFA 
Sbjct: 212 ITLKQLREQVISVAKALDAMFSKGDAIAIDMPMTANAVIIYLAIILSGLVVVSIADSFAP 271

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EI+ RLRVS+AK IFTQDFILRG RKFPLYS+V+ AAP K IVLPAIG++VGI LREQD
Sbjct: 272 KEISIRLRVSQAKAIFTQDFILRGSRKFPLYSRVVEAAPDKVIVLPAIGSNVGIQLREQD 331

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
           +SW DFLSSV    R   YSP Y PVD ++NILFSSGTTGEPKAIPWTQLS IRC AE W
Sbjct: 332 MSWGDFLSSVG--TRSRNYSPCYQPVDTLINILFSSGTTGEPKAIPWTQLSPIRCAAESW 389

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240
           AH+D++VGDV+CWPTNLGWVMGP+++FSSFL+GATLALY GSPL   FGKFVQDAGVT L
Sbjct: 390 AHMDMQVGDVFCWPTNLGWVMGPILIFSSFLSGATLALYHGSPLGYGFGKFVQDAGVTKL 449

Query: 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 300
           GTVPSLVKAW+NT C+ GLDWTKI+ FASTGETSNVDDDLWLSS+A+Y  +IE CGGTEL
Sbjct: 450 GTVPSLVKAWKNTQCMNGLDWTKIKCFASTGETSNVDDDLWLSSRAYYKPVIECCGGTEL 509

Query: 301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
           SS+YIQGSLLQPQAFGAFST +MT  LVILDE G P+PDDQ C+GEVGLFPLYLGA+DRL
Sbjct: 510 SSSYIQGSLLQPQAFGAFSTTSMTTSLVILDEHGNPFPDDQACIGEVGLFPLYLGATDRL 569

Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           LNADHEEVYF+GMP+YKGM LRRHGDIIKRTVGGY IVQGRADDTMNLGGIKTSSVEIER
Sbjct: 570 LNADHEEVYFKGMPLYKGMRLRRHGDIIKRTVGGYFIVQGRADDTMNLGGIKTSSVEIER 629

Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 480
           VCD+ADESI+ETAA+SVSP  GGPE LV+FVVLK G+ S+ + L+  FSKAIQS LNPLF
Sbjct: 630 VCDRADESIVETAAVSVSPVDGGPEQLVMFVVLKNGYNSEAENLRTKFSKAIQSNLNPLF 689

Query: 481 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           KV  VK+VPEFPRTASNKLLRRVLRDQIKHELS  SRI
Sbjct: 690 KVRFVKIVPEFPRTASNKLLRRVLRDQIKHELSAHSRI 727

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518845|ref|XP_003629711.1| Acetyl-coenzyme A synthetase [Medicago truncatula] gi|355523733|gb|AET04187.1| Acetyl-coenzyme A synthetase [Medicago truncatula]

 Score =  846 bits (2185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/518 (77%), Positives = 456/518 (88%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           +T K+LREQVMLVANA+D  FSKGDAIAIDM MTV +VIIYLAI+LAG VVVSIADSFA 
Sbjct: 253 ITLKQLREQVMLVANAIDANFSKGDAIAIDMQMTVNSVIIYLAIVLAGCVVVSIADSFAP 312

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EIATRLRVS AKGIFTQDFILRGG+KFPLYS+V+ AA  K IVLP IGND+G+ LREQD
Sbjct: 313 KEIATRLRVSDAKGIFTQDFILRGGKKFPLYSRVVEAAACKVIVLPVIGNDIGVQLREQD 372

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
           LSW  FLSS   +PR ++YSP+Y  +D+V NILFSSGTTG+PKAIPWTQLS IR  A+GW
Sbjct: 373 LSWNSFLSSGKQNPRSHHYSPIYQSIDSVTNILFSSGTTGDPKAIPWTQLSPIRSAADGW 432

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240
           A ID++ GDVYCWPTNLGWVMGP +L+S FL+GATLALY GSPL   FGKFVQDAGVT+L
Sbjct: 433 ALIDIQPGDVYCWPTNLGWVMGPTLLYSCFLSGATLALYHGSPLGHGFGKFVQDAGVTIL 492

Query: 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 300
           GTVPSLVK W++T C+EGLDWTKI+ F STGETSNVDDDLWLSSK++Y  IIE CGGTEL
Sbjct: 493 GTVPSLVKTWKSTQCMEGLDWTKIKKFCSTGETSNVDDDLWLSSKSYYKPIIECCGGTEL 552

Query: 301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
           +S YI GSLLQPQAFGAFSTA++T GLVILDE GVPYPDD PCVGEVGLFP+ +GA+DRL
Sbjct: 553 ASCYIMGSLLQPQAFGAFSTASLTTGLVILDENGVPYPDDVPCVGEVGLFPVSMGATDRL 612

Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           LNADHE++YF GMP+YKG  LRRHGDIIKRTVGG+++VQGRADDTMNLGGIKTSSVEIER
Sbjct: 613 LNADHEKIYFEGMPLYKGKVLRRHGDIIKRTVGGHLVVQGRADDTMNLGGIKTSSVEIER 672

Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 480
           VCD+ADE ILETAA+SVSPA GGPE LVIFVVLKKG+ S  + LK  FSKAIQ+ LNPLF
Sbjct: 673 VCDRADECILETAAVSVSPANGGPEQLVIFVVLKKGYDSDAETLKKKFSKAIQTNLNPLF 732

Query: 481 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           K+SLVK+VP FPRTASNK+LRRVLRDQ+KHELSV SR+
Sbjct: 733 KISLVKIVPMFPRTASNKILRRVLRDQMKHELSVHSRL 770

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525251|ref|XP_003531240.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max]

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/518 (77%), Positives = 452/518 (87%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           MT K+LR QVMLVANA+D  FSKGDAIAIDM MTV AVIIYLAI+LAG VVVSIADSFA 
Sbjct: 211 MTLKQLRHQVMLVANAIDATFSKGDAIAIDMQMTVNAVIIYLAIVLAGCVVVSIADSFAP 270

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EIATRLRVSKAKGIFTQDFI RGGRKFPLYS+V+ AA  K IVLP IG+D+G+ LR+ D
Sbjct: 271 KEIATRLRVSKAKGIFTQDFISRGGRKFPLYSRVIEAAACKVIVLPVIGDDLGVQLRDCD 330

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
           +SWK FLSS   HPR ++YSP+   +D V NILFSSGTTGEPKAIPWTQLS IR  A+ W
Sbjct: 331 ISWKVFLSSSRQHPRSHHYSPIIQSIDTVTNILFSSGTTGEPKAIPWTQLSPIRSAADAW 390

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240
           A ID++ GDVYCWPTNLGWVMGP +++S FL+GATLALY GSPL   FGKFVQDAGVT+L
Sbjct: 391 AFIDIQPGDVYCWPTNLGWVMGPTLIYSCFLSGATLALYHGSPLGHGFGKFVQDAGVTIL 450

Query: 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 300
           GTVPSLVK W++T C+EGLDWTKI+ F STGETSNVDDDLWLSSK++Y  IIE CGGTEL
Sbjct: 451 GTVPSLVKTWKSTQCMEGLDWTKIKIFCSTGETSNVDDDLWLSSKSYYKPIIECCGGTEL 510

Query: 301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
           +S+YI GS LQPQAFGAFSTA+MT GLVILDE GVPYP+D  CVGEVGLFP+Y+GA+DRL
Sbjct: 511 ASSYIIGSPLQPQAFGAFSTASMTTGLVILDENGVPYPEDVACVGEVGLFPIYMGATDRL 570

Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           LNAD+EEVYF+GMP+YKG  LRRHGDIIKRTVGG+ +VQGRADDTMN+GGIKTSSVEIER
Sbjct: 571 LNADNEEVYFKGMPIYKGKVLRRHGDIIKRTVGGHFVVQGRADDTMNIGGIKTSSVEIER 630

Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 480
           VCD+ADE ILETAAISV+PA GGPE LVIF VLKKG+ S  + LK  FSKAIQS LNPLF
Sbjct: 631 VCDRADEGILETAAISVAPANGGPEQLVIFAVLKKGYNSNAETLKRKFSKAIQSNLNPLF 690

Query: 481 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           KVSLVK+VP+FPRTASNKLLRRVLRDQ+K ELS++SR+
Sbjct: 691 KVSLVKIVPDFPRTASNKLLRRVLRDQMKRELSIQSRL 728

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052960|ref|XP_002297639.1| predicted protein [Populus trichocarpa] gi|222844897|gb|EEE82444.1| predicted protein [Populus trichocarpa]

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/518 (73%), Positives = 452/518 (87%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           MT KELRE+VMLVANA+D  FSKGD IAIDMPMTV A+IIY AIILAG VVVSIADSFAA
Sbjct: 1   MTLKELRERVMLVANAVDATFSKGDVIAIDMPMTVHAIIIYFAIILAGCVVVSIADSFAA 60

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EIATRL VS AKGIFTQDFILRGGRKFPLYS+V+ AAP KAIVLP  G DV I LREQD
Sbjct: 61  KEIATRLHVSNAKGIFTQDFILRGGRKFPLYSRVVEAAPHKAIVLPVSGEDVCIKLREQD 120

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
            SW DFL+SV   PRPN+YSPVYNP+D   NILFSSGTTGEPKAIPWTQLS IR   +GW
Sbjct: 121 QSWGDFLASVINLPRPNHYSPVYNPIDFPTNILFSSGTTGEPKAIPWTQLSPIRAANDGW 180

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240
           A++DL+VGDV+C+PTNLGWV GP++L+ +FL+GAT ALY GSPL   FGKFVQDAGVT+L
Sbjct: 181 AYVDLQVGDVFCYPTNLGWVAGPIVLYEAFLSGATFALYHGSPLGGGFGKFVQDAGVTIL 240

Query: 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 300
           GT+P++VKAW++TNC++GL+WTKIRSF + GE S+VD+ LWLSS+A+Y  IIE CGGTEL
Sbjct: 241 GTIPTMVKAWKSTNCMKGLNWTKIRSFVTAGEASDVDNVLWLSSRAYYKPIIEVCGGTEL 300

Query: 301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
           +S+Y+QG+LLQPQAFGA STA+M  G+VIL++ GVPYPDDQPCVGEVGLFPL +GASDRL
Sbjct: 301 ASSYLQGTLLQPQAFGALSTASMATGVVILNDNGVPYPDDQPCVGEVGLFPLIMGASDRL 360

Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           LNADH+++YF+GMPMYKGM LRRHGDIIKRT GGY IVQGRADDTMNLGGIKTSSVEIE 
Sbjct: 361 LNADHDKIYFKGMPMYKGMQLRRHGDIIKRTAGGYFIVQGRADDTMNLGGIKTSSVEIEH 420

Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 480
            C+  D+SI+E+ AIS +P  GGPE+LV+F VLK+G++S+P+ L+  F++AIQ+ LNPLF
Sbjct: 421 ACNNVDQSIVESIAISAAPEDGGPELLVMFAVLKEGYSSKPEDLQKKFTRAIQTNLNPLF 480

Query: 481 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           KV+ V++VPE PRT+SNKLLRRVLRDQ+K ELSVRS+I
Sbjct: 481 KVNHVRIVPEIPRTSSNKLLRRVLRDQMKKELSVRSKI 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042386|gb|AFD33357.1| acyl-activating enzyme 13 [Cannabis sativa]

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/518 (75%), Positives = 447/518 (86%), Gaps = 2/518 (0%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           +T K+LREQV+ VA +LD MFSKGDAIA+DMPMT  AVIIYLAIIL+G VVVSIADSFA 
Sbjct: 200 ITLKQLREQVISVAKSLDAMFSKGDAIAMDMPMTANAVIIYLAIILSGLVVVSIADSFAP 259

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EIA+RL VS+AK IFTQDFILRGGRKFPLYS+V+ AAP + IVLPA G+++GI LREQD
Sbjct: 260 KEIASRLHVSQAKAIFTQDFILRGGRKFPLYSRVVEAAPDRVIVLPATGSNIGIQLREQD 319

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
           +SW DFLSSV    R   YSP Y PVD+++NILFSSGTTGEPKAIPWT LS IRC+++ W
Sbjct: 320 MSWGDFLSSVGTRSRK--YSPCYQPVDSLINILFSSGTTGEPKAIPWTHLSPIRCSSDFW 377

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240
           A++D+KVGDV CWPTNLGW +GP ILF+ FL+GA LALY GSPL R FGKFVQDA VT L
Sbjct: 378 AYMDIKVGDVVCWPTNLGWALGPFILFTCFLSGAVLALYHGSPLGRGFGKFVQDASVTKL 437

Query: 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 300
           GTVPSLVK W+NT C++GLDWTKI+SFASTGETSNVDDDLWLSS+A+Y  +IE CGGTEL
Sbjct: 438 GTVPSLVKTWKNTQCMKGLDWTKIKSFASTGETSNVDDDLWLSSQAYYKPVIECCGGTEL 497

Query: 301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
           +S+YIQGSLLQPQAFGAF+TATMT   VI+DE G PYPDDQ C GEVGL PLYLGASDRL
Sbjct: 498 ASSYIQGSLLQPQAFGAFNTATMTTSFVIIDEHGNPYPDDQACTGEVGLIPLYLGASDRL 557

Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           LNADHEEVYF+GMP+YKGM LRRHGDII RTVGGY IVQGRADDTMNLGGIKTSS EIE 
Sbjct: 558 LNADHEEVYFKGMPLYKGMRLRRHGDIINRTVGGYFIVQGRADDTMNLGGIKTSSFEIEH 617

Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 480
           VCD+AD+SILETAA+SVSP GGGPE LV+FVVLK G+ ++ + L+  FSKAIQS LNPLF
Sbjct: 618 VCDRADDSILETAAVSVSPIGGGPEQLVMFVVLKNGYDAEAENLRTKFSKAIQSNLNPLF 677

Query: 481 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           KV+ VK+V EFPRT SNKLLRRVLRDQ+  E S++S+I
Sbjct: 678 KVTAVKIVHEFPRTMSNKLLRRVLRDQLNREFSIQSKI 715

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042368|gb|AFD33348.1| acyl-activating enzyme 4, partial [Cannabis sativa]

 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/518 (76%), Positives = 442/518 (85%), Gaps = 3/518 (0%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           +T K+LREQV+ VA ALD MFSKGDAIAIDMPMT  AVIIYLAIIL+G VVVSIADSFA 
Sbjct: 209 ITLKQLREQVISVAKALDAMFSKGDAIAIDMPMTANAVIIYLAIILSGLVVVSIADSFAP 268

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           +EI+ RLRVS+AK IFTQDFILRG RKFPLYS+V+ AAP K IVLPAIG++VGI LREQD
Sbjct: 269 KEISIRLRVSQAKAIFTQDFILRGSRKFPLYSRVVEAAPDKVIVLPAIGSNVGIQLREQD 328

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
           +SW DFLSSV    R   YSP Y PVD ++NILFSSGTTGEPKAIPWTQLS IRC AE W
Sbjct: 329 MSWGDFLSSVG--TRSRNYSPCYQPVDTLINILFSSGTTGEPKAIPWTQLSPIRCAAESW 386

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 240
           AH+D++VGDV+CWPTNLGWVMGP+++FSSFL+GATLALY GSPL   FGKFVQDAGVT L
Sbjct: 387 AHMDMQVGDVFCWPTNLGWVMGPILIFSSFLSGATLALYHGSPLGYGFGKFVQDAGVTKL 446

Query: 241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 300
           GTVPSLVKAW+NT C+ GLDWTKI+ FASTGETSNVDDDLWLSS+A+Y  +IE CGGTEL
Sbjct: 447 GTVPSLVKAWKNTQCMNGLDWTKIKCFASTGETSNVDDDLWLSSRAYYKPVIECCGGTEL 506

Query: 301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
           SS+YIQGSLLQPQAFGAFST +MT  LVILDE G P+PDDQ C+GEVGLFPLYLGA+DRL
Sbjct: 507 SSSYIQGSLLQPQAFGAFSTTSMTTSLVILDEHGNPFPDDQACIGEVGLFPLYLGATDRL 566

Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           LNADHEEVYF+    Y   C        +RTVGGY IVQGRADDTMNLGGIKTSSVEIER
Sbjct: 567 LNADHEEVYFKEC-HYTKECASETWRYYQRTVGGYFIVQGRADDTMNLGGIKTSSVEIER 625

Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 480
           VCD+ADESI+ETAA+SVSP  GGPE LV+FVVLK G+ S+ + L+  FSKAIQS LNPLF
Sbjct: 626 VCDRADESIVETAAVSVSPVDGGPEQLVMFVVLKNGYNSEAENLRTKFSKAIQSNLNPLF 685

Query: 481 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           KV  VK+VPEFPRTASNKLLRRVLRDQIKHELS  SRI
Sbjct: 686 KVRFVKIVPEFPRTASNKLLRRVLRDQIKHELSAHSRI 723

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
TAIR|locus:2035721	727	AAE18 "acyl-activating enzyme	1.0	0.712	0.750	2.1e-210
TAIR|locus:2178277	721	AAE17 "acyl-activating enzyme	0.976	0.701	0.570	3.3e-150
TIGR_CMR|BA_2553	646	BA_2553 "acetoacetyl-CoA synth	0.936	0.750	0.294	4.8e-46
DICTYBASE|DDB_G0277815	674	acsA "acetyl-CoA synthetase" [	0.961	0.738	0.273	5.5e-37
TIGR_CMR|CPS_3955	648	CPS_3955 "acetyl-CoA synthetas	0.944	0.754	0.261	1.6e-31
TIGR_CMR|SO_2743	650	SO_2743 "acetyl-coenzyme A syn	0.951	0.758	0.255	1.7e-31
UNIPROTKB|P27550	652	acs [Escherichia coli K-12 (ta	0.944	0.75	0.262	2.2e-31
POMBASE|SPCC191.02c	662	SPCC191.02c "acetyl-CoA ligase	0.961	0.752	0.257	8.2e-31
UNIPROTKB|Q3AEC0	647	acoE "Acetyl-coenzyme A synthe	0.947	0.758	0.258	3.2e-30
TIGR_CMR|CHY_0659	647	CHY_0659 "acetyl-CoA synthetas	0.947	0.758	0.258	3.2e-30

TAIR|locus:2035721 AAE18 "acyl-activating enzyme 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 2034 (721.1 bits), Expect = 2.1e-210, P = 2.1e-210
 Identities = 391/521 (75%), Positives = 445/521 (85%)

Query:     1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
             MT KELREQVMLVANA+   F KGD IAIDMPMTV AVIIYLAIILAG +VVSIADSFAA
Sbjct:   207 MTIKELREQVMLVANAISGSFEKGDTIAIDMPMTVDAVIIYLAIILAGCIVVSIADSFAA 266

Query:    61 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
             +EIATRL++SKAKGIFTQD+ILRGGR+FPLYS+V+ AAP K IVLPA G ++ + LREQD
Sbjct:   267 KEIATRLKISKAKGIFTQDYILRGGRRFPLYSRVVEAAPSKVIVLPASGTELHVQLREQD 326

Query:   121 LSWKDFLSSVDYHPR-PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
             +SW DFLS+   H    NYY P+Y PV++V+NILFSSGTTGEPKAIPWTQLS IR   +G
Sbjct:   327 VSWMDFLSNAKPHSSGENYYRPIYLPVESVINILFSSGTTGEPKAIPWTQLSPIRSACDG 386

Query:   180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239
             WAH+D++VG  YCWPTNLGWVMGP ++FS FL GATLALY GSPL R FGKFVQDAGVTV
Sbjct:   387 WAHLDVQVGHTYCWPTNLGWVMGPTLMFSCFLTGATLALYSGSPLGRGFGKFVQDAGVTV 446

Query:   240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 299
             LGTVPSLVK W+ TNC+EGL+WTKI+ FA+TGE SNVDD LWLSSKA Y  +IE CGGTE
Sbjct:   447 LGTVPSLVKTWKRTNCMEGLNWTKIKFFATTGEASNVDDVLWLSSKADYKPVIECCGGTE 506

Query:   300 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDR 359
             L+S+YI GS LQPQAFGAFST +MT  ++I DE GVPYPDDQPC GEVGLFP +LGA+DR
Sbjct:   507 LASSYIIGSPLQPQAFGAFSTPSMTTRIIIFDENGVPYPDDQPCTGEVGLFPQHLGATDR 566

Query:   360 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 419
             LLNA+H+EVYF+GMPMYK   LRRHGDI+KRTVGGY  VQGRADDTMNLGGIKTSS+EIE
Sbjct:   567 LLNANHDEVYFKGMPMYKETRLRRHGDIVKRTVGGYYNVQGRADDTMNLGGIKTSSIEIE 626

Query:   420 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP-DKLKMIFSKAIQSKLNP 478
             RVCDQADE I ETAA++++P  GGPE+LVIF VLK+GF  Q  ++LKM FS+ IQ  LNP
Sbjct:   627 RVCDQADECISETAAVTLTPPNGGPELLVIFAVLKEGFKQQSGEELKMKFSRTIQKDLNP 686

Query:   479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL-SVRSRI 518
             LFKVS VK+VPEFPRTAS+KLLRRVLRDQIK EL S+RSRI
Sbjct:   687 LFKVSFVKIVPEFPRTASSKLLRRVLRDQIKQELLSLRSRI 727

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IMP

TAIR|locus:2178277 AAE17 "acyl-activating enzyme 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
 Identities = 292/512 (57%), Positives = 363/512 (70%)

Query:     1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
             MT  ELR QV L A+AL  +   +  AIA+DMPM V +VIIYLAI+LAG+VVVSIADSF+
Sbjct:   203 MTLLELRSQVWLAAHALSALGLEEESAIAVDMPMNVESVIIYLAIVLAGHVVVSIADSFS 262

Query:    60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-APLKAIVLPAIGNDVGIPLRE 118
              REI+TRL++SKAK IFTQD I+RG +  PLY +V+ A APL AIV+PA G+   + LRE
Sbjct:   263 PREISTRLKISKAKAIFTQDVIIRGDKSIPLYRRVVDAEAPL-AIVVPARGSSCRMKLRE 321

Query:   119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 178
             +DLSW +FL +   + R   Y     P  A  NILFSSGTTGEPKAIPWT +S ++  A+
Sbjct:   322 KDLSWNNFLGNAR-NLRGVEYVAAEKPAGAYTNILFSSGTTGEPKAIPWTNISPLKSAAD 380

Query:   179 GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 238
              W H+D++ GDV  WPTNLGW+MGP ++++S +NGA + LY GSPL  +F KFVQDA V+
Sbjct:   381 AWCHLDVQRGDVVAWPTNLGWMMGPWLVYASLINGACMGLYNGSPLGPTFAKFVQDAEVS 440

Query:   239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 298
             VLG +PS+V+ W+N+N   G DW++IR F STGE SN+D+ LWL  +A Y  +IE CGGT
Sbjct:   441 VLGVIPSIVRTWQNSNSTSGYDWSRIRCFGSTGEASNIDEYLWLMGRAHYKPVIEYCGGT 500

Query:   299 ELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASD 358
             E+  ++I GSLLQPQ+  AFSTA M   L ILDE   P P     VGE+ L P   GAS 
Sbjct:   501 EIGGSFISGSLLQPQSLAAFSTAAMGCKLFILDEDSNPIPPYAAGVGELALCPHMFGASS 560

Query:   359 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 418
              LLN +H +VYF+GMP ++G  LRRHGD+ +RT  GY    GRADDTMNLGGIK  S+EI
Sbjct:   561 TLLNGNHFKVYFQGMPTFQGQILRRHGDLFERTSKGYYRAHGRADDTMNLGGIKVGSIEI 620

Query:   419 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK--LKMIFSKAIQSKL 476
             ERVC+  D+S+LETAAI V P  GGPE LVI VV K    S PD   LK  F+  IQ KL
Sbjct:   621 ERVCNSVDDSVLETAAIGVPPPSGGPEQLVIAVVFKSPEFSNPDLNLLKKSFNSEIQKKL 680

Query:   477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 508
             NPLFKVS V  +P  PRTA+NK++RRVLR Q+
Sbjct:   681 NPLFKVSSVVTLPSLPRTATNKVMRRVLRQQL 712

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=ISS

GO:0005829 "cytosol" evidence=RCA

TIGR_CMR|BA_2553 BA_2553 "acetoacetyl-CoA synthase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 153/519 (29%), Positives = 252/519 (48%)

Query:     2 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
             TY+EL   V   AN L      KGD + I MPM    V+  LA++  G ++  I   FA+
Sbjct:   116 TYEELDSWVSRAANGLKHAGIEKGDRVTIYMPMIPETVVAMLAVMKIGAIISPIFSGFAS 175

Query:    61 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PL--KAIVLPAIGNDVGIP 115
               + TR++ + +K I T D   R G+   L  +V  A    P   K +++   GND   P
Sbjct:   176 DAVMTRVQAAGSKMIITADGFSRRGKIVSLKDEVDKACEHCPTVEKVVIVRHAGNDF-TP 234

Query:   116 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-SIR 174
                 D SW    S+++   +P  ++   +  D ++ ++++SGTTG+PK    T     ++
Sbjct:   235 -HNYDFSW----STLEKE-KPFVHAEEMHSDDPLM-LIYTSGTTGKPKGTVHTHAGFPLK 287

Query:   175 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP----LERSFGK 230
                +    +++K GD   W T++GW+MGP +LF S +NGAT+ +Y+G P     +R + +
Sbjct:   288 AAFDAGFGMNIKQGDRVLWVTDMGWMMGPFLLFGSLINGATMVMYEGVPDFPKADRLW-E 346

Query:   231 FVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 288
              V    +T LG  P+L++A   +    +       +  FASTGE  N D  +WL      
Sbjct:   347 TVDKYEITHLGISPTLIRALMAKGDEYVNKHSLKSLEVFASTGEPWNPDPWMWLFETVGK 406

Query:   289 N--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE 346
             +   I    GGTE+S       L++P A  +F+ +      V+LD+ G P  D+   VGE
Sbjct:   407 SNVPICNYSGGTEISGGIFGNVLIKPIAPISFNASLPGMAAVVLDDQGNPIRDE---VGE 463

Query:   347 VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM 406
             + L   ++G +      D E         ++   +  HGD +      YII  GR+DDT+
Sbjct:   464 LCLEKPWVGMTKSFWE-DDERYVNTYWSRFENKWV--HGDWVVYDGEQYIIT-GRSDDTL 519

Query:   407 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 466
             N+ G +    E E +  + ++ ++E AAI V     G EV   FVVL+   T   +  K 
Sbjct:   520 NIAGKRIGPAEYESILVKHND-VIEAAAIGVPDDVKG-EVCHCFVVLRDNVTFTGELKKE 577

Query:   467 IFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             + S  + S +        + VV + P+T ++K++RRV++
Sbjct:   578 LMS-LVNSHIGKALCPKDIHVVEDLPKTRNSKVMRRVIK 615

GO:0016877 "ligase activity, forming carbon-sulfur bonds" evidence=ISS

GO:0019287 "isopentenyl diphosphate biosynthetic process, mevalonate pathway" evidence=ISS

DICTYBASE|DDB_G0277815 acsA "acetyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 403 (146.9 bits), Expect = 5.5e-37, P = 5.5e-37
 Identities = 148/541 (27%), Positives = 245/541 (45%)

Query:     1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
             +TY+E+ E+V  ++N L ++   KGD +AI +P T  A+   LA    G +   I   F 
Sbjct:   118 VTYREMFEEVCRLSNLLISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFG 177

Query:    60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLRE 118
                I +R+  +K + I T D  LRGGR  PL  K+       K +    +  + G P   
Sbjct:   178 YESIVSRVHDAKCRVIITADEGLRGGRYIPLKEKIDQVVQHCKLVQHVLVFKNTGRPTIT 237

Query:   119 QDLS---WKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC 175
              + S   W D  + +D+ P   Y  PV+   +  + IL++SG+TG PK +  TQ   +  
Sbjct:   238 FNPSIDIWADE-AMLDHRP---YCPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYLLY 293

Query:   176 TAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGK 230
              A    ++ D    DVY    ++GW+ G   I++    NGAT  +++G+PL  +   + +
Sbjct:   294 AAMTHRYVFDYHDSDVYACMADVGWITGHSYIVYGPLANGATTFIFEGTPLYPTPARYWE 353

Query:   231 FVQDAGVTVLGTVPSLVKAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 288
              VQ   +T   T P+ +++      +  +  D + +R   S GE  N +   W ++    
Sbjct:   354 MVQRHKITQFYTAPTAIRSLMKFPISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGE 413

Query:   289 N--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-----G--LVILD-ECGVP-Y 337
                AI+++   TE       G L+ P   G  ST   +A     G  L +LD + G   Y
Sbjct:   414 GRCAIVDTYWQTESG-----GHLITPLP-GVTSTKPGSATKPFFGIELQVLDSKTGERLY 467

Query:   338 --PDDQPCVGEVGLFPL---YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 392
               PD   C    G+  +   + G + R +   H       M  YKG      GD +K   
Sbjct:   468 INPDINGCKEISGVLAISKPWPGIA-RSVYRSHGRYLQTYMTQYKGHYFT--GDGVKLDS 524

Query:   393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 452
              GY  ++GR DD +N+ G +  + E+E        SI   AA+   P     + ++ F  
Sbjct:   525 DGYYWIEGRVDDVINVSGHRLGTAELESALVGC--SICAEAAVVGYPHDIKGQGILAFCT 582

Query:   453 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512
             LK+G+      + M+  K +++ + P     ++ + P  P+T S K++RR+LR    HE 
Sbjct:   583 LKEGYQEDESNVIMMLKKEVRNVIGPFATPDVIVITPSLPKTRSGKIMRRILRKIGCHES 642

Query:   513 S 513
             S
Sbjct:   643 S 643

GO:0016208 "AMP binding" evidence=IEA;ISS

GO:0006085 "acetyl-CoA biosynthetic process" evidence=ISS

GO:0003987 "acetate-CoA ligase activity" evidence=IEA;ISS

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TIGR_CMR|CPS_3955 CPS_3955 "acetyl-CoA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 365 (133.5 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 137/523 (26%), Positives = 220/523 (42%)

Query:     1 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
             +TY+EL + V   AN L +    KGD + I MPM        LA    G +   +   F+
Sbjct:   108 VTYQELHDHVCRFANLLKERGVKKGDRVCIYMPMIPEVGYAMLACARIGAIHSVVFGGFS 167

Query:    60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
                I  R+  +  K + T D  LRGG++ PL S V  A     I  P + + + +     
Sbjct:   168 TESIKARVLDADCKVVITADQSLRGGKRIPLKSNVDAAV----IDCPNVHSVIVVARTGG 223

Query:   120 DLSWKDFLSSVDYHPRPNYYSPVYNP--VDAV--VNILFSSGTTGEPKAIPWTQLSSIRC 175
             D++W D +  ++Y       S +  P  +DA   + +L++SG+TG PK +  T    I  
Sbjct:   224 DVAWNDKVD-INYEEAVAKQSAICEPEVMDAEDPLFVLYTSGSTGTPKGVVHTCGGYILY 282

Query:   176 TAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ 233
              A    ++ D K G+VY    + GW+ G   I +    NGAT  +++G P     G+F Q
Sbjct:   283 AAMTHKYVFDYKEGEVYWCTADAGWITGHSYIFYGPLANGATTLVFEGVPTYPDAGRFWQ 342

Query:   234 DAG---VTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 288
                   V V  T P+ ++A  +   + +   D + +R   + GE  N   + W     WY
Sbjct:   343 VCEKHKVNVFYTAPTAIRALMSIGDDLVNQADLSSLRLLGTVGEPIN--PEAW----HWY 396

Query:   289 NAII--ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV-G 345
               ++   +C   +       G +L     GA       AG          +  D   + G
Sbjct:   397 YEVVGKSNCPIVDTWWQTETGGILITSLPGAVDMKPGCAGKPFFGVQPALFDKDGNTLEG 456

Query:   346 E-VGLFPLYLGASDRL--LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA 402
             E  GL  +      +L  +  DH   Y   +  Y G      GD  KR   GY  + GR 
Sbjct:   457 ENAGLLVMTASWPGQLRTVYGDHNRFYQTYLGQYPGNYFT--GDGAKRDEDGYYWITGRV 514

Query:   403 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD 462
             DD +N+ G +  + EIE        ++ E A +       G  V   +V L  G  ++ D
Sbjct:   515 DDVLNVSGHRLGTAEIESAL-VLHPAVAEAAVVGYPHEIKGQGVYC-YVTLM-GNATESD 571

Query:   463 KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             +L +   + +  +L    K   ++  P  P+T S K++RR+LR
Sbjct:   572 ELNVELREFVAKELGRFAKPDYIQWSPGLPKTRSGKIMRRILR 614

GO:0003987 "acetate-CoA ligase activity" evidence=ISS

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=ISS

TIGR_CMR|SO_2743 SO_2743 "acetyl-coenzyme A synthetase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 365 (133.5 bits), Expect = 1.7e-31, P = 1.7e-31
 Identities = 137/537 (25%), Positives = 235/537 (43%)

Query:     1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
             +TY EL  QV   ANAL +    +GD + I MPM   A +  LA    G V   +   F+
Sbjct:   108 ITYGELHTQVCKFANALRSQGVRRGDIVTIYMPMVPEAAVAMLACARIGAVHSVVFGGFS 167

Query:    60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA--P-----LKAIVLPAIGNDV 112
                IA+R+   K+K + T D  +RGGR  PL   +  A   P      K IVL   G  +
Sbjct:   168 PDSIASRVIDGKSKIVITSDEGMRGGRAIPLKRNIDDALKHPDVTSVEKVIVLKRTGGKI 227

Query:   113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
                +  +D+ W   + +   H          +P+     +L++SG+TG PK +  T    
Sbjct:   228 DW-VEGRDVWWHSLVETASEHCAVEEMG-AEDPLF----LLYTSGSTGNPKGVLHTTGGY 281

Query:   173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERS--- 227
             +   +    ++ D K G++Y    ++GW+ G   +++    NGAT+ +++G P   S   
Sbjct:   282 MVYASMTHEYVFDYKPGEIYWCTADVGWITGHSYMVYGPLANGATVLIHEGVPNHPSPAR 341

Query:   228 FGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
              G+ +    V +L T P+L++A         +  + + +R   S GE  N   + W    
Sbjct:   342 LGEMIDRHKVNILYTAPTLIRALMAEGKQHFDKYNGSSLRIMGSVGEPIN--PEAW---- 395

Query:   286 AWYNAII--ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-----GL--VILDECGVP 336
              WY+ +I  E C   +       G +L     GA  T   +A     G+   ++D  G  
Sbjct:   396 RWYHEVIGHEHCPIVDTWWQTETGGILITPLPGATDTKPGSATRPFFGVQPALVDNMGNI 455

Query:   337 YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 396
                +    G + L   + G   R +  DHE         ++GM     GD  +R   GY 
Sbjct:   456 L--EGATEGNLVLLDSWPGQM-RTVYGDHERFVLTYFKTFRGMYFT--GDGARRDEDGYY 510

Query:   397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 456
              + GR DD +N+ G +  + E+E     + E + E A +   P     + +  +V L +G
Sbjct:   511 WITGRVDDVINVSGHRLGTAEVESAL-VSHELVAEAAVVGY-PHDIKGQGIYAYVTLTRG 568

Query:   457 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513
              T + ++L+    + ++ ++  L    L++     P+T S K++RR LR    +E++
Sbjct:   569 -TEESEELRQELRQWVRKEIGALATPDLIQWATGLPKTRSGKIMRRFLRKIAANEVT 624

GO:0003987 "acetate-CoA ligase activity" evidence=ISS

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=ISS

UNIPROTKB|P27550 acs [Escherichia coli K-12 (taxid:83333)]

 Score = 364 (133.2 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 138/525 (26%), Positives = 220/525 (41%)

Query:     1 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
             ++YKEL   V   AN L +    KGD +AI MPM   A +  LA    G V   I   F+
Sbjct:   108 ISYKELHRDVCRFANTLLELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167

Query:    60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA--PL-----KAIVLPAIGNDV 112
                +A R+  S ++ + T D  +R GR  PL   V  A   P        +VL   G  +
Sbjct:   168 PEAVAGRIIDSNSRLVITSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKI 227

Query:   113 GIPLREQDLSWKDFLSSV-DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS 171
                   +DL W D +    D H          N  D +  IL++SG+TG+PK +  T   
Sbjct:   228 DWQ-EGRDLWWHDLVEQASDQHQAEEM-----NAEDPLF-ILYTSGSTGKPKGVLHTTGG 280

Query:   172 SIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP---LER 226
              +   A  + ++ D   GD+Y    ++GWV G   +L+     GAT  +++G P      
Sbjct:   281 YLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA 340

Query:   227 SFGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 284
                + V    V +L T P+ ++A        +EG D + +R   S GE  N +   W   
Sbjct:   341 RMAQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWK 400

Query:   285 KAWYNA--IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL--VILDECGVPYPDD 340
             K       ++++   TE +  ++   L       A S      G+   ++D  G P   +
Sbjct:   401 KIGNEKCPVVDTWWQTE-TGGFMITPLPGATELKAGSATRPFFGVQPALVDNEGNPL--E 457

Query:   341 QPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG 400
                 G + +   + G + R L  DHE         +K M     GD  +R   GY  + G
Sbjct:   458 GATEGSLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITG 514

Query:   401 RADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ 460
             R DD +N+ G +  + EIE     A   I E A + + P     + +  +V L  G    
Sbjct:   515 RVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGI-PHNIKGQAIYAYVTLNHGEEPS 572

Query:   461 PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             P+    +    ++ ++ PL    ++      P+T S K++RR+LR
Sbjct:   573 PELYAEV-RNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

GO:0003987 "acetate-CoA ligase activity" evidence=IEA;IDA;IPI

GO:0005575 "cellular_component" evidence=IDA

GO:0045733 "acetate catabolic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0016208 "AMP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0050218 "propionate-CoA ligase activity" evidence=IDA

POMBASE|SPCC191.02c SPCC191.02c "acetyl-CoA ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 360 (131.8 bits), Expect = 8.2e-31, P = 8.2e-31
 Identities = 136/529 (25%), Positives = 231/529 (43%)

Query:     1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
             +TY+EL   V   A AL +M    GD +AI MPM    +I  LAI+  G +   I   F+
Sbjct:   118 ITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMIPETIIAMLAIVRLGAIHSVIFAGFS 177

Query:    60 AREIATRLRVSKAKGIFTQDFILRGGRKFPL---YSKVLGAAPL--KAIVLPAIGNDVGI 114
             A  +A R+  S+ K I T D   RGG++ PL    +K L   P   K +V          
Sbjct:   178 AESVADRVNDSECKVIITADESHRGGKRIPLKGVVNKALTECPTIKKVLVFQRSAEPTAS 237

Query:   115 PLREQDLSWKDFLSSVDYHPRPNYYSP-VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI 173
              +  +D+ W D +        P Y  P V NP   +  +L++SG+TG+PK +       +
Sbjct:   238 MVEGRDVWWHDIIPKF-----PRYCPPAVVNPEHPLF-LLYTSGSTGKPKGVVHCTGGYL 291

Query:   174 RCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKF 231
                A    ++ DL   D      ++GW+ G   I++   + GA   +++ +P    + ++
Sbjct:   292 LGAAATCKYVFDLHPTDRMGCAGDVGWITGHTYIVYGPLMLGAATLVFESTPAYPDYSRY 351

Query:   232 ---VQDAGVTVLGTVPSLVKAWRNT-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 287
                V+   +T     P+ ++  +   N     D + +R   S GE    +  +W      
Sbjct:   352 WSVVERHRLTQWYIAPTAIRLLQRAGNEFVKHDRSSLRVLGSVGEPIAPESFMWYYEVVG 411

Query:   288 YN--AIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 343
                 A+ ++   TE  S +I  SL  + P   G+ +        VI+D       +    
Sbjct:   412 EKRCAVADTYWQTETGS-HIVTSLGPVTPMKPGSATLPFFGIDAVIIDPLTGKIIEGNDV 470

Query:   344 VGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 403
              G + +   +  A+ R +   H+      +  Y G      GD   R   GYI ++GR D
Sbjct:   471 EGVLAIRSPWPSAA-RTVWRGHDRYIDTYLKPYPGFYFT--GDGATRDKDGYIWIRGRVD 527

Query:   404 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK 463
             D +N+ G + S+ EIE      D ++ E+A + V     G  V   F++LK G+ +  + 
Sbjct:   528 DVVNISGHRLSTAEIEAALLSHD-AVAESAVVGVHDELTGQAVNA-FILLKPGYEATVEL 585

Query:   464 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512
              K +   A++S + P F      +  + P+T S K++RR+LR  +  E+
Sbjct:   586 EKELIM-AVRSTIGP-FASPRKLIFSDLPKTRSGKIMRRILRKILAGEV 632

GO:0003987 "acetate-CoA ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=ISO

GO:0016208 "AMP binding" evidence=ISM

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0019654 "acetate fermentation" evidence=ISO

UNIPROTKB|Q3AEC0 acoE "Acetyl-coenzyme A synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 355 (130.0 bits), Expect = 3.2e-30, P = 3.2e-30
 Identities = 135/523 (25%), Positives = 231/523 (44%)

Query:     1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
             +TY+EL  +V   AN L  +   KGD + I MPM   AVI  LA    G     +   F+
Sbjct:   110 LTYQELYREVNKFANVLKKLGVQKGDRVTIYMPMIPEAVIAMLACTRIGAPHSVVFGGFS 169

Query:    60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK----VLGAAPL-KAIVLPAIGNDVGI 114
             ++ +  R+  +KAK + T D   R G    L       + G   + K +V+   G +V  
Sbjct:   170 SQALKDRIDDAKAKLLITADGGYRRGSIVELKKNADAALEGETTIEKVVVVKRTGQEV-- 227

Query:   115 PLRE-QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI 173
             P+ E +D  + + ++         Y  P     + ++ IL+SSGTTG+PK I  T    +
Sbjct:   228 PMTEGRDYWYHELMADAAL-----YCEPEQCDAEDMLFILYSSGTTGKPKGIQHTTGGYL 282

Query:   174 RCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP---LERSF 228
                   + +I D +  D+Y    ++GW+ G   I++    NGAT+ LY+G+P    +  F
Sbjct:   283 VGVHTTFKYIFDYREEDIYWCTADIGWITGHSYIVYGPLSNGATVVLYEGAPDWPQKDRF 342

Query:   229 GKFVQDAGVTVLGTVPSLVKAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 286
              + ++   V +L T P+ ++ +        +G D + +R   + GE  N +  +W     
Sbjct:   343 WEIIEKYRVNILYTAPTAIRTFMRWGEKWPKGRDLSSLRLLGTVGEPINPEAWIWYHEHI 402

Query:   287 WYNA--IIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 343
                   I+++   TE     I     + P   G+ +         ++++ G P P  Q  
Sbjct:   403 GGGRCPIVDTWWQTETGMIMITPLPGVIPTKPGSATKPFPGVEADVVNDKGEPVPPGQG- 461

Query:   344 VGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 403
              G + L   +  A  R L  D E         + G      GD  K+   GY  + GR D
Sbjct:   462 -GYLVLKKPW-PAMLRTLYGDPERYKNTYWSKFPGWYFT--GDGAKKDEDGYFWILGRVD 517

Query:   404 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK 463
             D +N+ G +  ++E+E    +    + E A I  S    G + +  FV LK+G    P+ 
Sbjct:   518 DVINVSGHRIGTMEVESALVE-HPLVAEAAVIGKSHEVKG-QAIAAFVTLKEGVEGTPEL 575

Query:   464 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
             ++ +  + +  K+  L +   +    E P+T S K++RR+LRD
Sbjct:   576 VQEL-KQFVAQKIGALARPDDIFFTAELPKTRSGKIMRRLLRD 617

GO:0003987 "acetate-CoA ligase activity" evidence=ISS

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=ISS

TIGR_CMR|CHY_0659 CHY_0659 "acetyl-CoA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 355 (130.0 bits), Expect = 3.2e-30, P = 3.2e-30
 Identities = 135/523 (25%), Positives = 231/523 (44%)

Query:     1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
             +TY+EL  +V   AN L  +   KGD + I MPM   AVI  LA    G     +   F+
Sbjct:   110 LTYQELYREVNKFANVLKKLGVQKGDRVTIYMPMIPEAVIAMLACTRIGAPHSVVFGGFS 169

Query:    60 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK----VLGAAPL-KAIVLPAIGNDVGI 114
             ++ +  R+  +KAK + T D   R G    L       + G   + K +V+   G +V  
Sbjct:   170 SQALKDRIDDAKAKLLITADGGYRRGSIVELKKNADAALEGETTIEKVVVVKRTGQEV-- 227

Query:   115 PLRE-QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI 173
             P+ E +D  + + ++         Y  P     + ++ IL+SSGTTG+PK I  T    +
Sbjct:   228 PMTEGRDYWYHELMADAAL-----YCEPEQCDAEDMLFILYSSGTTGKPKGIQHTTGGYL 282

Query:   174 RCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP---LERSF 228
                   + +I D +  D+Y    ++GW+ G   I++    NGAT+ LY+G+P    +  F
Sbjct:   283 VGVHTTFKYIFDYREEDIYWCTADIGWITGHSYIVYGPLSNGATVVLYEGAPDWPQKDRF 342

Query:   229 GKFVQDAGVTVLGTVPSLVKAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 286
              + ++   V +L T P+ ++ +        +G D + +R   + GE  N +  +W     
Sbjct:   343 WEIIEKYRVNILYTAPTAIRTFMRWGEKWPKGRDLSSLRLLGTVGEPINPEAWIWYHEHI 402

Query:   287 WYNA--IIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 343
                   I+++   TE     I     + P   G+ +         ++++ G P P  Q  
Sbjct:   403 GGGRCPIVDTWWQTETGMIMITPLPGVIPTKPGSATKPFPGVEADVVNDKGEPVPPGQG- 461

Query:   344 VGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 403
              G + L   +  A  R L  D E         + G      GD  K+   GY  + GR D
Sbjct:   462 -GYLVLKKPW-PAMLRTLYGDPERYKNTYWSKFPGWYFT--GDGAKKDEDGYFWILGRVD 517

Query:   404 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK 463
             D +N+ G +  ++E+E    +    + E A I  S    G + +  FV LK+G    P+ 
Sbjct:   518 DVINVSGHRIGTMEVESALVE-HPLVAEAAVIGKSHEVKG-QAIAAFVTLKEGVEGTPEL 575

Query:   464 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
             ++ +  + +  K+  L +   +    E P+T S K++RR+LRD
Sbjct:   576 VQEL-KQFVAQKIGALARPDDIFFTAELPKTRSGKIMRRLLRD 617

GO:0003987 "acetate-CoA ligase activity" evidence=ISS

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84P17	AEE18_ARATH	6, ., 2, ., 1, ., -	0.7504	1.0	0.7125	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.691
4th Layer	6.2.1.16	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024773001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (727 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	518
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.0
PLN03051	499	PLN03051, PLN03051, acyl-activating enzyme; Provis	0.0
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	2e-74
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	8e-73
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-53
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	8e-52
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	3e-48
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-46
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	1e-42
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	1e-42
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-40
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-39
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-36
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	4e-31
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	2e-28
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	7e-28
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-24
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	4e-24
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-22
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-20
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-20
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	7e-20
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-19
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-18
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-18
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-18
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-18
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-17
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	5e-17
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	7e-17
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	9e-17
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-16
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	2e-16
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-16
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	7e-16
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-15
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-15
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	8e-15
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-14
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-14
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-14
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	4e-14
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-13
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-13
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	2e-13
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-13
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-12
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	1e-11
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-11
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	6e-11
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	6e-11
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-10
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-10
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-10
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-10
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-09
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-09
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-09
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	5e-09
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-09
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-08
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	5e-08
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	6e-08
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	7e-08
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	8e-08
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-07
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-07
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-07
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	4e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-07
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	5e-07
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	7e-07
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	1e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	1e-06
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-06
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-06
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-06
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	2e-06
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-06
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-06
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	3e-06
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-06
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-06
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-06
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	5e-06
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	6e-06
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	7e-06
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-05
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-05
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-05
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	3e-05
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-05
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	4e-05
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	6e-05
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	6e-05
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	7e-05
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	7e-05
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-04
pfam13193	43	pfam13193, DUF4009, Domain of unknown function (DU	1e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	1e-04
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	1e-04
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	2e-04
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-04
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-04
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-04
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-04
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-04
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-04
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	4e-04
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-04
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	5e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-04
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	0.001
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	0.001
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	0.001
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	0.001
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	0.002
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	0.002
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	0.002
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	0.002
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	0.002
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	0.002
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	0.002
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	0.003
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	0.003
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	0.003
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	0.004

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score =  971 bits (2512), Expect = 0.0
 Identities = 348/521 (66%), Positives = 400/521 (76%), Gaps = 4/521 (0%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           MT  ELR QV  VANALD + F KGDAIAIDMPM V AVIIYLAIILAG VVVSIADSFA
Sbjct: 209 MTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFA 268

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
             EIATRL++SKAK IFTQD I+RGG+  PLYS+V+ A   KAIVLPA G  V + LRE 
Sbjct: 269 PSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREG 328

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
           D+SW DFL+  +   RP+ Y  V  PV+A  NILFSSGTTGEPKAIPWTQL+ +R  A+ 
Sbjct: 329 DMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADA 388

Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239
           WAH+D++ GD+ CWPTNLGW+MGP ++++S LNGATLALY GSPL R F KFVQDA VT+
Sbjct: 389 WAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTM 448

Query: 240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 299
           LGTVPS+VK W+NTNC+ GLDW+ IR F STGE S+VDD LWL S+A Y  IIE CGGTE
Sbjct: 449 LGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTE 508

Query: 300 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDR 359
           L   ++ GSLLQPQAF AFST  M   L ILD+ G PYPDD PC GE+ LFPL  GAS  
Sbjct: 509 LGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASST 568

Query: 360 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 419
           LLNADH +VYF+GMP++ G  LRRHGDI +RT GGY    GRADDTMNLGGIK SSVEIE
Sbjct: 569 LLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 628

Query: 420 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLK--KGFTSQPDKLKMIFSKAIQSKLN 477
           RVC+ ADES+LETAAI V P GGGPE LVI  VLK   G     ++LK IF+ AIQ KLN
Sbjct: 629 RVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLN 688

Query: 478 PLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI 518
           PLFKVS V +VP FPRTASNK++RRVLR Q+  ELS RS++
Sbjct: 689 PLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQELS-RSKL 728

Length = 728

>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional

 Score =  832 bits (2152), Expect = 0.0
 Identities = 347/499 (69%), Positives = 404/499 (80%), Gaps = 11/499 (2%)

Query: 31  MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 90
           MPMTV AVIIYLAI+LAG VVVS+ADSF+A+EIATRL +S AKG+FTQD +LRGGR  PL
Sbjct: 1   MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60

Query: 91  YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL--SSVDYHPRPNYYSPVYNPVDA 148
           YSKV+ AAP KAIVLPA G  V +PLREQDLSW DFL  ++       N YSPVY PV++
Sbjct: 61  YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVES 120

Query: 149 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 208
           V NILFSSGTTGEPKAIPWT LS +RC ++GWAH+D++ GDV CWPTNLGW+MGP +L+S
Sbjct: 121 VTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYS 180

Query: 209 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 266
           +FLNGATLALY G+PL R FGKFVQDAGVTVLG VPS+VKAWR+T    +EGLDW+K+R 
Sbjct: 181 AFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240

Query: 267 FASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 325
           FASTGE S VDD LWLSS + +Y  +IE CGGTEL+S YI  +LLQPQA GAFSTA++  
Sbjct: 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGT 300

Query: 326 GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRR 383
             V+L++ GVPYPDDQPCVGEV L P  LGASDRLLNADH++VY++GMPMY  KGM LRR
Sbjct: 301 RFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRR 360

Query: 384 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 443
           HGDI+KRT GGY  VQGRADDTMNLGGIKTSSVEIER CD+A   I ETAA+ V+P  GG
Sbjct: 361 HGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGG 420

Query: 444 PEVLVIFV---VLKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 499
           PE+LVIF+     KKGF    P+ L+  F +AIQ+ LNPLFKVS VK+VPE PR ASNKL
Sbjct: 421 PELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKL 480

Query: 500 LRRVLRDQIKHELSVRSRI 518
           LRRVLRDQ+K ELS RS++
Sbjct: 481 LRRVLRDQLKKELSGRSKL 499

Length = 499

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score =  242 bits (620), Expect = 2e-74
 Identities = 149/523 (28%), Positives = 225/523 (43%), Gaps = 89/523 (17%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY EL  +V  +A+ L  +   KGD + I MPM   AV+  LAI   G + V I   F 
Sbjct: 8   WTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFG 67

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
              +ATRL+ ++AK + T D  LR G++                          + L++ 
Sbjct: 68  PDAVATRLQDAEAKVLITADGFLRRGKR--------------------------VDLKDD 101

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAE 178
                                           I+++SGTTG+PK    T     ++   +
Sbjct: 102 PAM-----------------------------IIYTSGTTGKPKGTVHTHAGFPVKAAKD 132

Query: 179 GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDA 235
                DLK GD   W T++GW+MGP ++    L GAT+ LY+G+   P      + V+  
Sbjct: 133 IGFCFDLKPGDRLLWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRLWRIVERH 192

Query: 236 GVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK--AWYNAI 291
            VT LG  P+L++A R      +EG D + +R   STGE  + +  LWL  +       I
Sbjct: 193 KVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAPI 252

Query: 292 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----- 346
           I   GGTE+S   +    ++P    +F+  +      ++DE G P       VGE     
Sbjct: 253 INYSGGTEISGGILGNVPIRPIKPCSFNGPSPGMDADVVDEDGRPVR---GEVGELVVRA 309

Query: 347 --VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 404
              G+   +    +R     + E Y+   P   G+    HGD       GY  + GR+DD
Sbjct: 310 PWPGMTRGFWRDPER-----YLETYWSRFP---GVW--VHGDWALVDEDGYWYILGRSDD 359

Query: 405 TMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDK 463
           T+ + G +    EIE V +     + E AAI V  P  G  E +V FVVLK G T     
Sbjct: 360 TIKVAGKRVGPAEIESVLNSHPA-VAEAAAIGVPDPVKG--EAIVCFVVLKPGVT-PSAA 415

Query: 464 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
           L+   +  +   L   F+   V  V + P+T + K++RRV+R 
Sbjct: 416 LEAELADHVGDALGKPFRPREVHFVSDLPKTRNGKIMRRVIRA 458

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  240 bits (614), Expect = 8e-73
 Identities = 138/526 (26%), Positives = 218/526 (41%), Gaps = 68/526 (12%)

Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY +LR +V  +ANAL D    KGD +AI MP +  AVI  LA    G +   ++   +
Sbjct: 41  LTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLS 100

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A  +A R+     K +   D   R G++  L            +V               
Sbjct: 101 AEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVV------------PRL 148

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
            L + + +           +     P D  + +L++SGTTG+PK I  +    L   R T
Sbjct: 149 GLWYDEAVEKASEK-----FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT 203

Query: 177 AEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE--RSFGKFVQ 233
           A+   H DL  GD +   ++ GW+ G    +FS   +GAT  LY G P        + ++
Sbjct: 204 AK--FHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALE 261

Query: 234 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA--- 290
              VT+ GT P+ ++        E  D + +R   S GE  N +   W     +Y+A   
Sbjct: 262 KYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEW-----FYSALGV 316

Query: 291 -IIESCGGTELSSAYIQG--SLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV 347
            I++  G TE    +I G   +    +        +      +D+ G P P   P VGE+
Sbjct: 317 WILDIYGQTETGMGFIAGRPPVKNGSSGLPLPGYAV----RRVDDEGNPVP---PGVGEL 369

Query: 348 -------GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG 400
                  G+   Y    +R   A     Y               GD  +R   GY  + G
Sbjct: 370 VVRLPWPGMALTYWNDPERYKEAYFGRWYR-------------TGDWAERDEDGYFWLHG 416

Query: 401 RADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ 460
           R+DD + + G +   +EIE V   A  ++ E A + V P  G  ++++ FVVL  G    
Sbjct: 417 RSDDVIKVSGKRIGPLEIESVL-LAHPAVAEAAVVGV-PDPGKGQIVLAFVVLAAGVE-- 472

Query: 461 PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
           P++L     + +   + P      ++ V E P+TAS K+ RR+LR 
Sbjct: 473 PNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRK 518

Length = 528

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score =  189 bits (483), Expect = 3e-53
 Identities = 146/532 (27%), Positives = 228/532 (42%), Gaps = 66/532 (12%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +++ ELR QV  +A AL  +    GD +A  +P    AVI  LA    G +  S +  F 
Sbjct: 87  ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFG 146

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIP 115
              +  R    + K +F  D  +  G++     K+         L+A+V+    +    P
Sbjct: 147 VEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQP 206

Query: 116 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LS 171
              +  +     S       P  +  +  P D  + IL+SSGTTG PK I        L 
Sbjct: 207 AALKFSALTLLWSLAGDRAAPLEFERL--PFDHPLWILYSSGTTGLPKCIVHGAGGTLLQ 264

Query: 172 SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL---ERSF 228
            ++   E   H DL+ GD   + T  GW+M    L S  L+GATL LY GSPL       
Sbjct: 265 HLK---EHGLHCDLRPGDRLFYYTTTGWMMWN-WLVSGLLSGATLVLYDGSPLYPDPDVL 320

Query: 229 GKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTG-----ET-----SNV 276
            +     G+T+ GT    + A            D + +R+  STG     E      S+V
Sbjct: 321 WRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHV 380

Query: 277 DDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP 336
             D+WL+S +         GGT++   ++ G+   P   G      +   +   DE    
Sbjct: 381 KSDVWLASIS---------GGTDICGCFVGGNPTLPVYRGEIQCRGLGMAVEAFDE---- 427

Query: 337 YPDDQPCVGEVGLF---------PLY-LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGD 386
             + +P +GEVG           PLY     D    + + + YF     + G+   RHGD
Sbjct: 428 --EGKPVIGEVGELVCTKPFPSMPLYFWNDPD---GSRYRDAYFD---TFPGVW--RHGD 477

Query: 387 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 446
            IK T  G +I+ GR+D T+N GG++  + EI RV ++  E + ++  +      G  E 
Sbjct: 478 WIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPE-VEDSLVVGQEVDDGD-ER 535

Query: 447 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 498
           + +FV L++G T     +K I   AI++ L+P    + +  VP+ P T S K
Sbjct: 536 MPLFVKLREGVTLDDALVKRI-RSAIRAALSPRHVPAEIIAVPDIPYTLSGK 586

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  184 bits (468), Expect = 8e-52
 Identities = 129/536 (24%), Positives = 199/536 (37%), Gaps = 69/536 (12%)

Query: 1   MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY+EL  +   +A AL  +    GD +AI +P +   +I +LA + AG V V +     
Sbjct: 39  LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            RE+A  L  + AK + T            L   V  A P+  +VL     D  +P+  +
Sbjct: 99  PRELAYILNDAGAKVLITSA------EFAALLEAVAEALPVVLVVLLVGDADDRLPITLE 152

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-- 177
            L            P P+  +   +P D    +L++SGTTG PK +  T  + +   A  
Sbjct: 153 AL--------AAEGPGPDADARPVDPDDLAF-LLYTSGTTGLPKGVVLTHRNLLANAAGI 203

Query: 178 EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLE-RSFGKFVQDA 235
                  L   DV      L  + G  V L +  L G TL L    P +       ++  
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKY 263

Query: 236 GVTVLGTVPSLVKAWRNT-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 294
            VTVL  VP+ ++   +     +    + +R   S G     +       +    AI+E 
Sbjct: 264 KVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEG 323

Query: 295 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP----------DDQPCV 344
            G TE S                 +       L      G P P            +   
Sbjct: 324 YGLTETS--------------PVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP 369

Query: 345 GEVG--------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 396
           GEVG        +   Y    +    A  E+ + R             GD+      GY+
Sbjct: 370 GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRT------------GDLGYVDEDGYL 417

Query: 397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 456
            + GR  D +  GG      EIE V  +    + E A + V     G E +V  VVLK G
Sbjct: 418 YIVGRLKDLIISGGENIYPEEIEAVLAEHPA-VAEAAVVGVPDERWG-ERVVAVVVLKPG 475

Query: 457 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512
             ++    ++     ++ +L       +V  V E PRTAS K+ RR LR++ + E 
Sbjct: 476 GDAELTAEELR--AFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEP 529

Length = 534

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score =  176 bits (449), Expect = 3e-48
 Identities = 159/556 (28%), Positives = 232/556 (41%), Gaps = 99/556 (17%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +++ ELR QV  +A AL  +    GD +A  +P     V+  LA    G +  S +  F 
Sbjct: 115 LSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFG 174

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP--LKAIVLPAIGNDVGI 114
            + +  R    + K +   D    GG+ F   +KV     A P     +V+P +G     
Sbjct: 175 VQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAA 234

Query: 115 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIP-------W 167
                 L W+DFL+          + PV  P D  + IL+SSGTTG PK I         
Sbjct: 235 AALPGALLWEDFLA--PAEAAELEFEPV--PFDHPLWILYSSGTTGLPKCIVHGHGGILL 290

Query: 168 TQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP---- 223
             L  +        H DL  GD + W T  GW+M    L S  L GATL LY GSP    
Sbjct: 291 EHLKELGL------HCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPD 343

Query: 224 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-------EGLDWTKIRSFASTGE---- 272
               +     + GVTV GT    + A     C        E  D + +R+  STG     
Sbjct: 344 PNVLW-DLAAEEGVTVFGTSAKYLDA-----CEKAGLVPGETHDLSALRTIGSTGSPLPP 397

Query: 273 ------TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG 326
                   +V  D+WL+S       I   GGT++ S ++ G+ L P   G      +   
Sbjct: 398 EGFDWVYEHVKADVWLAS-------I--SGGTDICSCFVGGNPLLPVYRGEIQCRGLGMA 448

Query: 327 LVILDECGVPYPDDQPCVGEVG-L--------FPLYL-----GASDRLLNADHEEVYFRG 372
           +   DE G      +P VGEVG L         PL       G+  R  +A     YF  
Sbjct: 449 VEAWDEDG------RPVVGEVGELVCTKPFPSMPLGFWNDPDGS--RYRDA-----YFD- 494

Query: 373 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 432
              + G  + RHGD I+ T  G +++ GR+D T+N GG++  + EI R  +   E +L++
Sbjct: 495 --TFPG--VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPE-VLDS 549

Query: 433 AAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP 492
             I      G   +  +FVVL +G T        I    I++ L+P      +  VP+ P
Sbjct: 550 LVIGQEWPDGDVRM-PLFVVLAEGVTLDDALRARI-RTTIRTNLSPRHVPDKIIAVPDIP 607

Query: 493 RTASNKLL----RRVL 504
           RT S K +    +++L
Sbjct: 608 RTLSGKKVELPVKKLL 623

Length = 655

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  167 bits (425), Expect = 1e-46
 Identities = 103/428 (24%), Positives = 162/428 (37%), Gaps = 36/428 (8%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY+EL E+   +A AL  +    GD +AI +P +   V+  LA++ AG   V +  S  A
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
             +A  L  S+AK + T D          L  K+L       ++L  I         +  
Sbjct: 61  ERLAYILEDSEAKVLITDD---------ELLPKLLEVLLKLLVLLALIIVGDDGEGLDLL 111

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
                  +S +    P          D +  I+++SGTTG+PK +  T  + +   A   
Sbjct: 112 DDELLAGASAEPPAPPV-------DPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLA 164

Query: 181 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTV 239
               L  GD       L +      +F   L G TL L     L+       ++   VTV
Sbjct: 165 ERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224

Query: 240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 299
           L  VP+L++        +  D + +R   S GE    +    L  +     ++   G TE
Sbjct: 225 LYGVPTLLRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTE 284

Query: 300 LSSAYIQGSLLQP-QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLY 353
            +          P    G+         + +LDE G P P     VGE+     G+   Y
Sbjct: 285 TTVVATANLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPG--EVGELCIRGPGVARGY 342

Query: 354 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 413
           L   +        E +        G  + R GD+ +    GY+ + GR DD + + G + 
Sbjct: 343 LNDPEL-----TAERFVED-----GWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERI 392

Query: 414 SSVEIERV 421
              EIE V
Sbjct: 393 EPGEIEAV 400

Length = 412

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score =  160 bits (407), Expect = 1e-42
 Identities = 156/566 (27%), Positives = 250/566 (44%), Gaps = 102/566 (18%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY+EL  +V   AN L ++   KGD +AI MPM   A I  LA    G +   +   F+A
Sbjct: 90  TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSA 149

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAPL---KAIVLPAIGNDVGI 114
             +A R+  + AK + T D  LRGG+  PL + V   L   P+     +V+   GN V  
Sbjct: 150 EALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV-P 208

Query: 115 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSS 172
            +  +D+ W D ++         Y  P   P+D+   + IL++SG+TG+PK +       
Sbjct: 209 WVEGRDVWWHDLMAKA-----SAYCEP--EPMDSEDPLFILYTSGSTGKPKGV------- 254

Query: 173 IRCTAEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQG 221
           +  T  G   +A +      D+K GD++ W T ++GW+ G   I++    NGAT  +++G
Sbjct: 255 LHTTG-GYLLYAAMTMKYVFDIKDGDIF-WCTADVGWITGHSYIVYGPLANGATTVMFEG 312

Query: 222 SPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGE 272
           +P     G+F   ++   VT+  T P+ ++A        G +W K      +R   S GE
Sbjct: 313 TPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMR----LGDEWVKKHDLSSLRLLGSVGE 368

Query: 273 TSNVDDDLWLSSKAWYNAIIESCGGTE--LSSAYIQ---GSLLQPQAFGAFSTATMTAGL 327
             N   + W+    WY  ++   G     +   + Q   G ++     GA  T   +A L
Sbjct: 369 PIN--PEAWM----WYYKVV---GKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATL 419

Query: 328 -------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE---EVYFR 371
                   ++DE G    +     GE G    YL          R +  DHE   + YF 
Sbjct: 420 PFFGIEPAVVDEEG----NPVEGPGEGG----YLVIKQPWPGMLRTIYGDHERFVDTYF- 470

Query: 372 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 431
               + G      GD  +R   GYI + GR DD +N+ G +  + EIE     +  ++ E
Sbjct: 471 --SPFPGYYFT--GDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESAL-VSHPAVAE 525

Query: 432 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKLNPLFKVSLVKVV 488
            A + +     G + +  FV LK G+    +   +L+    K I     P+ K   ++ V
Sbjct: 526 AAVVGIPDDIKG-QAIYAFVTLKDGYEPDDELRKELRKHVRKEI----GPIAKPDKIRFV 580

Query: 489 PEFPRTASNKLLRRVLRDQIKHELSV 514
           P  P+T S K++RR+LR     E  +
Sbjct: 581 PGLPKTRSGKIMRRLLRKIAAGEEEI 606

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score =  160 bits (407), Expect = 1e-42
 Identities = 146/531 (27%), Positives = 220/531 (41%), Gaps = 44/531 (8%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +T+ ELR QV  +A AL  +    GD ++  +P   +AV+  LA    G +  S +  F 
Sbjct: 115 VTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFG 174

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL----GAAPLKAIVL-PAIGNDVGI 114
           AR +  R +  + K +FT D     G++     KV         L+A+V  P +G     
Sbjct: 175 ARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETE 234

Query: 115 -PLREQDLSWKDFLSSVDYHPRPNYYSPVYN--PVDAVVNILFSSGTTGEPKAIPWTQLS 171
            P  +  L  +DF ++            V+   P D  + ILFSSGTTG PK I  +   
Sbjct: 235 APKIDGALDLEDFTAAAQAAE------LVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGG 288

Query: 172 S-IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL---ERS 227
           + ++   E   H DL  GD   + T  GW+M    L S    GATL LY GSP       
Sbjct: 289 TLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNV 347

Query: 228 FGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWL--- 282
                +  G T+ GT    V A R          D + ++  ASTG     D   W+   
Sbjct: 348 LWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDE 407

Query: 283 -SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 341
             +  W  +I    GGT++ S +   +   P   G      +   +   D  G P   + 
Sbjct: 408 IKADVWLASI---SGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPVTGE- 463

Query: 342 PCVGEVGLFPLYLGASDRLLN----ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 397
             VGE+           R  N    + + + YF   P      + RHGD I  T  G I+
Sbjct: 464 --VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPG-----VWRHGDWITLTPRGGIV 516

Query: 398 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF 457
           + GR+D T+N  G++  S EI    ++ DE + E+  I      GG   +V+FV L  G 
Sbjct: 517 IHGRSDSTLNPQGVRMGSAEIYNAVERLDE-VRESLCIGQEQPDGG-YRVVLFVHLAPGA 574

Query: 458 TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 508
           T     L  I  + I++ L+P      +  VP  P T + K +   ++  +
Sbjct: 575 TLDDALLDRI-KRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVL 624

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score =  154 bits (392), Expect = 1e-40
 Identities = 159/572 (27%), Positives = 242/572 (42%), Gaps = 122/572 (21%)

Query: 2   TYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLA---------IILAGYVV 51
           TY+EL  +V   AN L ++   KGD +AI MPM     I  LA         ++ AG   
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAG--- 136

Query: 52  VSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIVLP 106
                 F+A  +A R+  +K+K + T D   RGG+  PL   V   L   P   K IV+ 
Sbjct: 137 ------FSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVK 190

Query: 107 AIGNDVGIPLRE-QDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPK 163
             G +V  P+ E +D+ W D ++         Y  P   P+DA   + IL++SG+TG+PK
Sbjct: 191 RTGGEV--PMVEGRDVWWHDLMAKA-----SPYCEPE--PMDAEDPLFILYTSGSTGKPK 241

Query: 164 AIPWTQ---LSSIRCTAEGWAH------IDLKVGDVYCWPT-NLGWVMG-PVILFSSFLN 212
            +  T    L         +A        D+   DVY W T ++GW+ G   I++    N
Sbjct: 242 GVVHTTGGYLV--------YAATTFKYVFDIHPDDVY-WCTADIGWITGHSYIVYGPLAN 292

Query: 213 GATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK------ 263
           GAT  +Y+G+P     G++   V+   VT+  T P+ ++         G +W K      
Sbjct: 293 GATTVMYEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRMLMR----FGDEWPKKHDLSS 348

Query: 264 IRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQ----GSLLQPQAFGA 317
           +R   S GE  N +   W+    WY  +I  E C    +   + Q    G ++ P   GA
Sbjct: 349 LRLLGSVGEPINPE--AWM----WYYEVIGKERC---PIVDTWWQTETGGHMITPLP-GA 398

Query: 318 FSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNAD 364
                 +A          I+DE G          G  G    YL          R +  D
Sbjct: 399 TPLKPGSATRPFPGVEPAIVDEEGNEVEG-----GVEG----YLVIKRPWPGMLRTIYGD 449

Query: 365 HE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER- 420
           HE   + YF     + G      GD  +R   GY  + GR DD +N+ G +  + E+E  
Sbjct: 450 HERYVKTYFS---KFPGYYFT--GDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESA 504

Query: 421 -VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 479
            V   +  ++ E A +       G E +  FV LK G     D+L+    K ++ ++ P+
Sbjct: 505 LV---SHPAVAEAAVVGKPDEVKG-EAIYAFVTLKDGVEP-SDELRKELKKHVRKEIGPI 559

Query: 480 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 511
                +  VP  P+T S K++RR+LR     E
Sbjct: 560 ATPDEIIFVPGLPKTRSGKIMRRILRKIAAGE 591

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  145 bits (369), Expect = 2e-39
 Identities = 97/363 (26%), Positives = 147/363 (40%), Gaps = 47/363 (12%)

Query: 152 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSF 210
           IL++SGTTG+PK +  +  + +         I L  GDV      L  V+G    L  + 
Sbjct: 5   ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64

Query: 211 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 270
           L G T+ LY+G P   SF + ++   VTVL  VP+L  A        G D + +R   S 
Sbjct: 65  LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLLISG 124

Query: 271 GETSNVDDDLWLSSKAWYNA-----IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 325
           GE       L       +       I+E  G TE S         + +  G       T 
Sbjct: 125 GEP------LSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPG-------TV 171

Query: 326 GLVILD-ECGVPYPDDQPC-VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPM 375
           G  +   E  V   + +P   GEVG        +   Y         A  E+ ++R    
Sbjct: 172 GRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYR---- 227

Query: 376 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 435
                    GD+      GY+ + GR+ D + +GG      E+E V  Q   ++ E A +
Sbjct: 228 --------TGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQH-PAVAEAAVV 278

Query: 436 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA 495
            V P     E +V FVVL+ G  +  ++LK      ++ +L P     +++ V E P+TA
Sbjct: 279 GV-PDEDRGERIVAFVVLRPGADALAEELK----AHLRERLAPYKVPRVIEFVDELPKTA 333

Query: 496 SNK 498
           S K
Sbjct: 334 SGK 336

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score =  142 bits (359), Expect = 3e-36
 Identities = 150/545 (27%), Positives = 240/545 (44%), Gaps = 64/545 (11%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY EL ++V  +A  L  +   KGD + I MPM   AVI  LA    G +   +   FA+
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------PLKAIVLPAIGNDVG 113
           +E+A+R+  +K K I T  F +  GR  P Y  +L  A       P K ++L      V 
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVP-YKPLLDKALELSQHKPHKVLILNR--GQVP 191

Query: 114 IPLR-EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV--VNILFSSGTTGEPKAIPWTQL 170
            PL+  +DL W + ++             V  PV++   + IL++SGTTG+PK +     
Sbjct: 192 APLKPGRDLDWAELMAKARPVD------CV--PVESTDPLYILYTSGTTGKPKGV----- 238

Query: 171 SSIR-----CTAEGWA--HI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQG 221
             +R       A  W+  +I  +K GDV+   +++GWV+G   I++   L+GAT  LY+G
Sbjct: 239 --VRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLHGATTVLYEG 296

Query: 222 SPLER----SFGKFVQDAGVTVLGTVPSLVKAWR----NTNCLEGLDWTKIRSFASTGET 273
            P+      ++ + +++ GV  L T P+ ++A R    +   ++  D + +R+    GE 
Sbjct: 297 KPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGER 356

Query: 274 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYI---QGSLLQPQAFGAFSTATMTAGLVIL 330
            +     W+  K     +I+    TE          G  L P   G+         + +L
Sbjct: 357 LDSPTLEWIE-KTLGVPVIDHWWQTETGWPITANCVGLELLPIKPGSPGKPVPGYDVQVL 415

Query: 331 DECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHE---EVYFRGMPMYKGMCLRRHGD 386
           DE G         +G + +  PL  G    L   D E   ++Y    P Y        GD
Sbjct: 416 DETGEELGPG--ELGNIVIKLPLPPGCLLTLWG-DDERFKKLYLNKFPGY-----YDTGD 467

Query: 387 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 446
              +   GY+ V GR DD +N+ G + S+ E+E         + E A + V     G +V
Sbjct: 468 SGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESV-LKHPDVAECAVVGVRDELKG-QV 525

Query: 447 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
            +  VVLK       D+L+      ++ ++ P+     V  V   P+T S K+LRR LR 
Sbjct: 526 PLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTLRK 585

Query: 507 QIKHE 511
               E
Sbjct: 586 IADGE 590

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score =  127 bits (321), Expect = 4e-31
 Identities = 164/587 (27%), Positives = 245/587 (41%), Gaps = 146/587 (24%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVV 51
           TY+EL  +V   ANAL ++   KGD +AI MPM   A +  LA         ++  G   
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGG--- 156

Query: 52  VSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIVLP 106
                 F+A  +A R+  + AK + T D  +RGG+  PL + V   L   P   K IV+ 
Sbjct: 157 ------FSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVR 210

Query: 107 AIGNDVGIPLRE-QDLSWKDFLSSV-DYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEP 162
             G DV     E +DL W + ++   D         P   P+DA   + IL++SG+TG+P
Sbjct: 211 RTGGDV--DWVEGRDLWWHELVAGASDECE------PE--PMDAEDPLFILYTSGSTGKP 260

Query: 163 KAIPWTQLSSIRCTAEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFL 211
           K +  T       T  G   +A +      D K GDVY W T ++GWV G   I++    
Sbjct: 261 KGVLHT-------TG-GYLVYAAMTMKYVFDYKDGDVY-WCTADVGWVTGHSYIVYGPLA 311

Query: 212 NGATLALYQG---SPLERSFGKFVQDAGVTVLGTVP----SLVKAWRNTNCLEGLDWTKI 264
           NGAT  +++G    P    F + +    VT+  T P    +L+K        EG +  K 
Sbjct: 312 NGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMK--------EGDEHPKK 363

Query: 265 RSFAS------TGETSNVDDDLWLSSKAWYNAII--ESC-----------GGTELSSAYI 305
              +S       GE  N   + W     WY  ++  E C           GG  ++    
Sbjct: 364 YDLSSLRLLGSVGEPIN--PEAWE----WYYKVVGGERCPIVDTWWQTETGGIMITPL-- 415

Query: 306 QGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASD 358
                 P   GA      +A          ++DE G P        GE G     L   D
Sbjct: 416 ------P---GATPLKPGSATRPLPGIQPAVVDEEGNPLEG-----GEGG----NLVIKD 457

Query: 359 ------RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 409
                 R +  DHE   + YF     +KGM     GD  +R   GY  + GR DD +N+ 
Sbjct: 458 PWPGMMRTIYGDHERFVKTYF---STFKGMYFT--GDGARRDEDGYYWITGRVDDVLNVS 512

Query: 410 GIKTSSVEIER--VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI 467
           G +  + EIE   V   A   + E A +       G + +  FV LK G     D+L+  
Sbjct: 513 GHRLGTAEIESALV---AHPKVAEAAVVGRPDDIKG-QGIYAFVTLKGGEEPS-DELRKE 567

Query: 468 FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 514
               ++ ++ P+ K  +++  P  P+T S K++RR+LR   + E  +
Sbjct: 568 LRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGEEIL 614

Length = 637

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score =  118 bits (298), Expect = 2e-28
 Identities = 137/537 (25%), Positives = 230/537 (42%), Gaps = 53/537 (9%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY++L  +V + A+AL  +   +GD + I MPM   AV   LA    G +   +   FA
Sbjct: 84  LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFA 143

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPA--IGNDVGI-PL 116
           +  +A R+  +  K I + D  +RGG+  P Y  +L AA  +A   P   +  D G+ P+
Sbjct: 144 SHSLALRIDDATPKLIVSADAGMRGGKVIP-YKPLLDAAIAEAQHPPPHVLLVDRGLAPM 202

Query: 117 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN-----ILFSSGTTGEPKAIPW-TQL 170
           R   +  +D    VDY      +     PV+ + +     IL++SGTTG+PK +      
Sbjct: 203 RL--IPGRD----VDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGG 256

Query: 171 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFG 229
            ++      WA   ++ G V    +++GWV+G   I+++  L GA   LY+G P     G
Sbjct: 257 YAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPG 316

Query: 230 ---KFVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 284
                V+  GV  + + P+ ++  +  +   L   D + +      GE  +     W++ 
Sbjct: 317 VWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITD 376

Query: 285 KAWYNAIIESCGGTELS---SAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 341
                 +I++   TE      A + G  L+P   G+         L +LDE        +
Sbjct: 377 -GLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEA-----TGR 430

Query: 342 PC-VGEVGLF----PLYLGASDRLLNADHEEV--YFRGM--PMYKGMCLRRHGDIIKRTV 392
           PC   E G+     PL  G    +   D   +  Y+     P+Y         D   R  
Sbjct: 431 PCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSF------DWGIRDE 484

Query: 393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 452
            GY  + GR DD +N+ G +  + EIE     +  S+ E A + V     G +V V+F +
Sbjct: 485 DGYTFILGRTDDVINVAGHRLGTREIEESV-SSHPSVAEVAVVGVHDELKG-QVAVVFAI 542

Query: 453 LKKGFTSQPDKLKMIFSKAIQ----SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
           LK+  ++            +      +L  + + + V  V   P+T S KLLRR ++
Sbjct: 543 LKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQ 599

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score =  117 bits (294), Expect = 7e-28
 Identities = 148/556 (26%), Positives = 230/556 (41%), Gaps = 92/556 (16%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL ++V  +AN L  +   KGDA+ I +PM +   I  LA    G V   +   F+
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFS 180

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI------GNDVG 113
           A  +A R+   K K + T + + RG        K +    LK IV  A+      G  VG
Sbjct: 181 AESLAQRIVDCKPKVVITCNAVKRG-------PKTI---NLKDIVDAALDESAKNGVSVG 230

Query: 114 IPL---------RE-------QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV-----VNI 152
           I L         RE       +D+ W+D +        PNY  P    V+ V     + +
Sbjct: 231 ICLTYENQLAMKREDTKWQEGRDVWWQDVV--------PNY--PTKCEVEWVDAEDPLFL 280

Query: 153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGWVMG-PVILFSSF 210
           L++SG+TG+PK +  T    +  TA  + +  D K  DVY    + GW+ G   + +   
Sbjct: 281 LYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPM 340

Query: 211 LNGATLALYQGSPLERSFGK---FVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIR 265
           LNGAT+ +++G+P     G+    V    VT+  T P+LV++        +       +R
Sbjct: 341 LNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLR 400

Query: 266 SFASTGETSN----------VDDDLWLSSKAWYNAIIESCGG---TELSSAYIQGSLLQP 312
              S GE  N          V D     S  W+       GG   T L  A+       P
Sbjct: 401 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQT---ETGGFMITPLPGAW-------P 450

Query: 313 QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH---EEVY 369
           Q  G+ +        VI+DE G     +  C G + +   + GA  R L  DH   E  Y
Sbjct: 451 QKPGSATFPFFGVQPVIVDEKGKEI--EGECSGYLCVKKSWPGAF-RTLYGDHERYETTY 507

Query: 370 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 429
           F+    Y        GD   R   GY  + GR DD +N+ G +  + E+E     +    
Sbjct: 508 FKPFAGY-----YFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESAL-VSHPQC 561

Query: 430 LETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 489
            E A + +     G  +   FV L +G     ++L+      +++++        +   P
Sbjct: 562 AEAAVVGIEHEVKGQGIYA-FVTLVEG-VPYSEELRKSLILTVRNQIGAFAAPDKIHWAP 619

Query: 490 EFPRTASNKLLRRVLR 505
             P+T S K++RR+LR
Sbjct: 620 GLPKTRSGKIMRRILR 635

Length = 666

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  105 bits (265), Expect = 2e-24
 Identities = 137/545 (25%), Positives = 213/545 (39%), Gaps = 100/545 (18%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL  +V   A AL  +   KGD +AI  P +   VI  L  + AG VVV +   + 
Sbjct: 31  LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLRE 118
           A E A  L    AK +F     L       +        P L+ +V+     D   P  E
Sbjct: 91  ADEAAYILARGDAKALFVLGLFL------GVDYSATTRLPALEHVVICETEEDD--PHTE 142

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 178
           +  ++ DFL++ D    P   +P  +P D V +ILF+SGTTG PK    T    +   A 
Sbjct: 143 KMKTFTDFLAAGD----PAERAPEVDP-DDVADILFTSGTTGRPKGAMLTHRQLLS-NAA 196

Query: 179 GWAHI-DLKVGD----------VYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPLER 226
            WA    L  GD          V+ +            + +  + GAT L L    P + 
Sbjct: 197 DWAEYLGLTEGDRYLAANPFFHVFGY---------KAGVNAPLMRGATILPLPVFDP-DE 246

Query: 227 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETS-------NVDDD 279
            F + ++   +TVL   P++  +          D + +R  A TG  S         + +
Sbjct: 247 VF-RLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLR-LAVTGAASMPVALLERFESE 304

Query: 280 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPY 337
           L +        ++   G +E S       L   +   A +  T  AG    I++E G   
Sbjct: 305 LGVDI------VLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEV 358

Query: 338 PDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG---------MPMYKGMCLRRHG--- 385
           P     VGEVG                  E+  RG          P      +   G   
Sbjct: 359 P-----VGEVG------------------ELLVRGPNVMKGYYDDPEATAAAIDADGWLH 395

Query: 386 --DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 443
             D+ +    GY+ +  R  D   +GG      E+E V  +   ++ E A I V     G
Sbjct: 396 TGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHP-AVAEAAVIGVPDERLG 454

Query: 444 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 502
            EV   +VVLK G     ++L + + +   +K    +KV   ++ + E P+ A+ K+L+R
Sbjct: 455 -EVGKAYVVLKPGAELTEEEL-IAYCREHLAK----YKVPRSIEFLDELPKNATGKVLKR 508

Query: 503 VLRDQ 507
            LR++
Sbjct: 509 ALREK 513

Length = 513

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  104 bits (263), Expect = 4e-24
 Identities = 126/543 (23%), Positives = 191/543 (35%), Gaps = 137/543 (25%)

Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL E     A  L      KGD +A+ +P   +  I Y  I+ AG VVV +   + 
Sbjct: 25  LTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYT 84

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            RE+  +L  S AK +                                            
Sbjct: 85  PRELEHQLNDSGAKVLIV------------------------------------------ 102

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTA 177
            +S++D L+S    P      PV    D +  + ++ GTTG PK    T   L +     
Sbjct: 103 AISFEDALASGAPLP-----LPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQI 157

Query: 178 EGWAHIDLKVGD----------VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS 227
             W     +  D          ++    N         +      GAT  L   +    +
Sbjct: 158 AAWVKDLREGEDRFLTALPLFHIFGLTVN---------MLLGLRLGATNVLVP-NFRPIN 207

Query: 228 FGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 287
             K ++    T+   VP+L  A  N    +  D++ +R   S G    V+      ++ +
Sbjct: 208 VLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVE-----VAERF 262

Query: 288 ---YNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-------ILDECGVP 336
                A ++E  G TE S       L   +  G       + GL        I+D+ G  
Sbjct: 263 EEKTGAPLVEGYGLTETSPVTTVNPLDGERKPG-------SIGLPLPGTEVKIVDDEGNE 315

Query: 337 YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGM------CLR----R 383
            P      GEVG                  E+  RG   M  Y          L     R
Sbjct: 316 LPP-----GEVG------------------ELVVRGPQVMKGYWNRPEETAEVLTDGWLR 352

Query: 384 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 443
            GDI      GY  +  R  D + +GG      EIE V   +  ++LE A + V P    
Sbjct: 353 TGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVL-YSHPAVLEAAVVGV-PDPYR 410

Query: 444 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 502
            E +  FVVLK+G +   ++L + F +    +L   +KV   V+   E P++A  K+LRR
Sbjct: 411 GEAVKAFVVLKEGASLTEEEL-IAFCR---ERLAA-YKVPRQVEFRDELPKSAVGKILRR 465

Query: 503 VLR 505
            LR
Sbjct: 466 ELR 468

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  100 bits (250), Expect = 2e-22
 Identities = 112/536 (20%), Positives = 189/536 (35%), Gaps = 95/536 (17%)

Query: 1   MTYKELREQVMLVANALDTMFS-KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +T+ +L ++ + +A  L  +   +GD +A+  P ++    ++L  + AG +V +   S+ 
Sbjct: 11  LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-----KAIVLPAIGNDVGI 114
             E+A +L++SK K IF                KV  AA       + IVL +  + V  
Sbjct: 71  PDELAHQLKISKPKLIFCDP---------DELDKVKEAAKELGPVVRIIVLDSAPDGVLR 121

Query: 115 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 174
                    +D L            +P+ +  D    +L+SSGTTG PK +    LS   
Sbjct: 122 I--------EDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGV---MLSHKN 170

Query: 175 CTA------EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSF 228
             A      +          DV           G     +S L GAT+ +      E +F
Sbjct: 171 IIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSE-TF 229

Query: 229 GKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 288
            K ++   VT L  VP +  A   +  ++  D + +R   S     + +    L  +   
Sbjct: 230 LKLIEKYKVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPN 289

Query: 289 NAIIESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGLV--ILDECGVPYPDDQPCVG 345
             I +  G TE   A    + L P       S   +   +   I+DE G           
Sbjct: 290 TTIKQGYGMTETGPA----TTLTPPGDEKPGSVGRLVPNVEAKIVDEDG----GKSLGPN 341

Query: 346 EVGLFPLYLGASDRLLNADHEEVYFRG---MPMY-------KGMCLR----RHGDIIKRT 391
           E G                  E+  +G   M  Y       K           GDI    
Sbjct: 342 ERG------------------ELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFD 383

Query: 392 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 451
             G   +  R  + +   G +    E+E V  +  + + + A I +     G E+   +V
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPK-VADAAVIGIPDEVAG-ELPRAYV 441

Query: 452 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK-------VVPEFPRTASNKLL 500
           VLK G          +  + ++  +    KV+  K        V E P++ S K+L
Sbjct: 442 VLKPG--------SKLTEQEVKDYVAK--KVAKYKQLRGGVVFVDEIPKSPSGKIL 487

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 93.8 bits (234), Expect = 1e-20
 Identities = 116/540 (21%), Positives = 180/540 (33%), Gaps = 138/540 (25%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL +    +A AL  +    GD +A  +P     V++YLA    G V+  I   + 
Sbjct: 2   LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            RE+   LR ++A+                             + +P             
Sbjct: 62  ERELGFILRQARAR----------------------------VLFVPD------------ 81

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
              ++ F    DY   P          D V  +L++SGTTGEPK +  T    L+ +R  
Sbjct: 82  --EFRGF----DYAAMP----------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSY 125

Query: 177 AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFG 229
            E      L   DV   P+ L  + G       FL G  L L  G+ +            
Sbjct: 126 VERLG---LTPDDVVLMPSPLAHITG-------FLYGLELPLLLGATVVLQDRWDPARAL 175

Query: 230 KFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 289
           + +++ GVT        +          G D   +R F   G    V  +L         
Sbjct: 176 ELIREHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAP--VPREL--------- 224

Query: 290 AIIESC---GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP-------- 338
                     G ++  AY  G    P                     G P P        
Sbjct: 225 --ARRAAEALGAKVVRAY--GMTEVPLVTVGTPDD---PDDKRAATDGRPVPGVEVRIVD 277

Query: 339 -DDQP----CVGEV-----GLFPLYLGASDRLLNADH--EEVYFRGMPMYKGMCLRRHGD 386
            D         GE+      LF   LG  D   N +   ++ +FR             GD
Sbjct: 278 DDGNDVPPGEEGELQVRGPQLF---LGYLDPPDNTEAFTDDGWFRT------------GD 322

Query: 387 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 446
           + +    GY+ + GR  D +  GG   S+ EIE +  +   ++ E A +++     G E 
Sbjct: 323 LGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHP-AVAEVAVVAMPDERLG-ER 380

Query: 447 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
           +   VV   G +    +L    +    +K    +   L  VV   PRT S K+ +  LR+
Sbjct: 381 VCAVVVPAPGASLTLAELTEHLAAQGLAK--QKWPERLE-VVDALPRTPSGKVQKFELRE 437

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 93.4 bits (233), Expect = 2e-20
 Identities = 121/553 (21%), Positives = 181/553 (32%), Gaps = 159/553 (28%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY+EL   V  +A  L  +    GD + + +P     VI+Y A+   G + V    +  
Sbjct: 41  LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHR 100

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A EI    R S+AK     D                                        
Sbjct: 101 AHEIGHFARQSEAKAYIIAD---------------------------------------- 120

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
              +  F    DY         +   +  V     S GTTG PK IP T    L S R +
Sbjct: 121 --RFSGF----DYAA---LARELLEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARAS 171

Query: 177 AEGWAHIDLKVGDVYCWPTNLG--WVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQ 233
           AE    +D   G VY         + +    L  + L G T+ L+   SP        ++
Sbjct: 172 AE-ACGLD--PGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDV--AFPLIE 226

Query: 234 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 293
              VT    VP+L+  W      +  D + +R                            
Sbjct: 227 REKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQV------------------------ 262

Query: 294 SCGGTELSSAYIQ------GSLLQPQAFGAFSTATMTAGLV------------------- 328
             GG  LS    +      G  LQ Q FG      M  GLV                   
Sbjct: 263 --GGAPLSPELARRVEERLGCPLQ-QVFG------MAEGLVNYTRLDDPPDVIMRTQGRP 313

Query: 329 --------ILDECGVPYPDDQPCVGEVG--------LFPLYLGASDRLLNADHEEVYFRG 372
                   I+D+ G P P      GEVG            Y  A +    A  ++ ++R 
Sbjct: 314 ISPADEIRIVDDQGEPVPP-----GEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRT 368

Query: 373 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 432
                       GD+++    GY  V GR  D +N GG K S  EIE +      ++ + 
Sbjct: 369 ------------GDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHP-AVADA 415

Query: 433 AAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEF 491
           A + +     G E +  FVV + G      +L+      ++ +    FK+   ++VV   
Sbjct: 416 AVVGMPDEVLG-ERICAFVVPRGGAAPTLAELR----AFLREQGLAKFKLPDRLEVVDSL 470

Query: 492 PRTASNKLLRRVL 504
           P T   K+ ++ L
Sbjct: 471 PLTPVGKVDKKAL 483

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 92.7 bits (231), Expect = 7e-20
 Identities = 139/566 (24%), Positives = 227/566 (40%), Gaps = 113/566 (19%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           T+++L ++V  +A  L ++   +GD + I MPM   A    LA    G +   +   FA+
Sbjct: 86  TFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFAS 145

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPA------------- 107
             +A R+  +K   I + D   RGG+  P Y  +L  A   A   P              
Sbjct: 146 HSLAARIDDAKPVLIVSADAGSRGGKVVP-YKPLLDEAIALAQHKPRHVLLVDRGLAPMA 204

Query: 108 --IGNDVGI-PLREQDLSWK---DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE 161
              G DV    LR Q L  +   ++L S +    P+Y             IL++SGTTG+
Sbjct: 205 RVAGRDVDYATLRAQHLGARVPVEWLESNE----PSY-------------ILYTSGTTGK 247

Query: 162 PKAIPWTQLSSIRCTAEGWA--------HI-DLKVGDVYCWPTNLGWVMG-PVILFSSFL 211
           PK +        R T  G+A         I   K G+ +   +++GWV+G   I+++  L
Sbjct: 248 PKGVQ-------RDTG-GYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLL 299

Query: 212 NGATLALYQGSPLERSFG---KFVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRS 266
            G    +Y+G P     G   + V+   V  + + P+ ++  +  +   L   D + +R+
Sbjct: 300 AGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRA 359

Query: 267 FASTGE-----TSN---------VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP 312
               GE     T++         V D+ W +   W   I+    G E           +P
Sbjct: 360 LFLAGEPLDEPTASWISEALGVPVIDNYWQTETGW--PILAIARGVED----------RP 407

Query: 313 QAFGAFSTATMTAGLVILDECGVPYPDDQPC-VGEVGLF----PLYLGASDRLLNADHEE 367
              G+         + +L+E        +PC   E G+     PL  G    +   D   
Sbjct: 408 TRLGSPGVPMYGYNVKLLNEV-----TGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRF 462

Query: 368 V--YFR--GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 423
           V  Y+   G  +Y         D   R   GY  + GR DD +N+ G +  + EIE    
Sbjct: 463 VKTYWSLFGRQVYSTF------DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEE-SI 515

Query: 424 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI----QSKLNPL 479
            +  ++ E A + V  A  G +V V FVV K   +    + ++   K I     S+L  +
Sbjct: 516 SSHPAVAEVAVVGVKDALKG-QVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAV 574

Query: 480 FKVSLVKVVPEFPRTASNKLLRRVLR 505
            + + V  V   P+T S KLLRR ++
Sbjct: 575 ARPARVWFVSALPKTRSGKLLRRAIQ 600

Length = 629

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 111/440 (25%), Positives = 173/440 (39%), Gaps = 67/440 (15%)

Query: 89  PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 148
            L+  +L A  L A+V+PA        L   DL  +D  S     P+           D 
Sbjct: 37  ELWEAMLAAIKLGAVVIPATTL-----LTPADL--RDRFS--RGKPKAIVADETR--ADD 85

Query: 149 VVNILFSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWV-MGPV 204
            + + F+SGTTG PK +  T +S       T   W  I L+ GD++   ++ GW      
Sbjct: 86  PILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMY-W--IGLQPGDIHLNISSPGWAKHAWS 142

Query: 205 ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPSLVKAWRN--TNCLEGLDW 261
             F+ +  GAT+        + R +   ++  GVT     P+    WR      L   D 
Sbjct: 143 SFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPT---VWRMFIQQDLAQYD- 198

Query: 262 TKIRSFASTGETSNVD-DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 320
            ++R   S GE  N +  +     KAW   I +  G TE ++A I  S  Q    G+   
Sbjct: 199 VRLREAVSAGEPLNPEVIERV--KKAWGLTIRDGYGQTE-TTAMIGNSPGQKVKPGSMGR 255

Query: 321 ATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHEEVYFR 371
                 +V+LD+ G   P      GE+         GL   Y+G  ++   A     Y  
Sbjct: 256 PLPGYRVVLLDDEGKEIPVT---EGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYY-- 310

Query: 372 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 431
                      R GD   R   GY+   GRADD       + S  E+E         +LE
Sbjct: 311 -----------RTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESA-------LLE 352

Query: 432 TAAISVSPAGGGPE-----VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK 486
             A++ +     P+     V   ++VLK G+    +    +F+  ++ +L P  ++  ++
Sbjct: 353 HPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAH-VRERLAPYKRIRRIE 411

Query: 487 VVPEFPRTASNKLLRRVLRD 506
            V E P+T S K+ R  LR 
Sbjct: 412 FVGELPKTISGKIRRVELRK 431

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 88.7 bits (221), Expect = 1e-18
 Identities = 121/543 (22%), Positives = 206/543 (37%), Gaps = 90/543 (16%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY EL E+V  +ANAL  +   KGD +A+    +   +  Y A+   G V+  I     
Sbjct: 32  TTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLK 91

Query: 60  AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 118
             EIA  L  ++ + +    +F+       PL + +L   P    V+   G+    PL  
Sbjct: 92  PEEIAYILNDAEDRVVLVDSEFV-------PLLAAILPQLPTVRTVI-VEGDGPAAPLAP 143

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSIRCT 176
           +   +++ L++        +  P  +  DA   +L++SGTTG PK +  +   L      
Sbjct: 144 EVGEYEELLAA---AS-DTFDFPDIDENDAAA-MLYTSGTTGHPKGVVLSHRNLFLHSLA 198

Query: 177 AEGWAHIDLKVGDVY-----CWPTN-LGWVMGPVILFSSFLNGATLAL---YQGSPLERS 227
              W  + L   DVY      +  +  G    P +   + + GA   +   +    L   
Sbjct: 199 VCAW--LKLSRDDVYLVIVPMFHVHAWGL---PYL---ALMAGAKQVIPRRFDPENLL-- 248

Query: 228 FGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 287
               ++   VT    VP++ +          +D++ +R     G  + +   L    K  
Sbjct: 249 --DLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGG--AALPPALLREFKEK 304

Query: 288 YNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-------ILDECGVPYPD 339
           +   +++  G TE S   +     + Q  G ++    +AG         I+D+ G   P 
Sbjct: 305 FGIDLVQGYGMTETSPV-VSVLPPEDQLPGQWTKRR-SAGRPLPGVEARIVDDDGDELPP 362

Query: 340 DQPCVGEV---------GLFPLYLG---ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI 387
           D   VGE+         G    Y     A+   ++                  L   GD+
Sbjct: 363 DGGEVGEIIVRGPWLMQG----YWNRPEATAETIDGGW---------------LHT-GDV 402

Query: 388 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 447
                 GY+ +  R  D +  GG      E+E        ++ E A I V     G   +
Sbjct: 403 GYIDEDGYLYITDRIKDVIISGGENIYPRELEDALY-GHPAVAEVAVIGVPDEKWGERPV 461

Query: 448 VIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSL-VKVVPEFPRTASNKLLRRVLRD 506
              VVLK G T    +L+      ++ +L   FK+   +  V E PRT+  K+L+RVLR+
Sbjct: 462 A-VVVLKPGATLDAKELR----AFLRGRLAK-FKLPKRIAFVDELPRTSVGKILKRVLRE 515

Query: 507 QIK 509
           Q  
Sbjct: 516 QYA 518

Length = 521

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 87.7 bits (218), Expect = 2e-18
 Identities = 84/384 (21%), Positives = 141/384 (36%), Gaps = 70/384 (18%)

Query: 152 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL----- 206
           ++++SG+TG+PK +  T   +I C              +      LG   G  +L     
Sbjct: 104 VIYTSGSTGKPKGVVITH-RNI-CNF------------LRAEGAILGIRPGDRVLQFASI 149

Query: 207 ---------FSSFLNGATLALYQGSPLERS--FGKFVQDAGVTVLGTVPSLVKAWRNTNC 255
                    F++ L G TL +       R     +F+    VTV    PSL+      + 
Sbjct: 150 AFDVSILEIFTTLLAGGTLVI--PPEELRLEDLAEFLNRLRVTVAHLTPSLLALLDPEDV 207

Query: 256 LEGLDWTKIRSFASTGET-SNVDDDLWLSSKAWYNAIIESCGGTE--LSSAYIQGSLLQP 312
                   +R+    GE       D W   +   N      G TE  +++   + +  +P
Sbjct: 208 ------PSLRTLILGGEACPQALVDRWSKPRRLLNT----YGPTEATVTATASRLTPGKP 257

Query: 313 QAFG-AFSTATMTAGLVILDECGVPYPDDQPCV--GEVGLFPLYLG----ASDRLLNADH 365
              G      T      +LD      PD +P V  G VG   L +G    A   L   + 
Sbjct: 258 VNIGRPLPNYTC----WVLD------PDLEPLVPIGAVG--ELCIGGPGVARGYLNRPEL 305

Query: 366 -EEVYFRG--MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 422
             E +          G  + R GD+++    G +   GR DD + + G +    EIE V 
Sbjct: 306 TAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVL 365

Query: 423 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 482
                 ++    + +   GG  + LV F+ +      +P  + +   ++   +  P + V
Sbjct: 366 RALPGVVVAAVVLLLDDPGG--KQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMV 423

Query: 483 -SLVKVVPEFPRTASNKLLRRVLR 505
            S+   + E P TAS K+ R+ LR
Sbjct: 424 PSVYVPLDELPLTASGKVDRKALR 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 123/530 (23%), Positives = 194/530 (36%), Gaps = 81/530 (15%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY EL+E+V    NAL  +   + + + + +  T      +   I  G V V I      
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK-AIVLPAIGNDVGIPLRE 118
            +    L  S+A+ +   + +        +    L   P L+  IV+   G         
Sbjct: 92  DDYRYYLNDSRARVLVISEELW------EVLKPALQKDPHLRHVIVVGGAGPGA------ 139

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 178
             LS+   +++          S      D +   L+SSG+TG PK +       +  TAE
Sbjct: 140 --LSYAQLIATAAEELEAAATSA-----DDMAFWLYSSGSTGRPKGVVHLH-HDMLVTAE 191

Query: 179 GWAHIDLKV--GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDA 235
            +A   L +   DV      L +  G    L+     GAT  L    P   +    ++  
Sbjct: 192 AYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERY 251

Query: 236 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIES 294
             TV   VP+L  A          D + +R   S GE   +  ++    K  +   I++ 
Sbjct: 252 KPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEA--LPAEIGYRWKELFGLEILDG 309

Query: 295 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFPL 352
            G TE+   ++     +P A    ++     G  + ++DE G    D     GE+G    
Sbjct: 310 IGSTEMLHIFLSN---RPGAVKYGTSGKPVPGYEVKLVDEDGEEVAD-----GEIG---- 357

Query: 353 YLGASDRLLNADHEEVYFRG---MPMY-----------KGMCLRRHGDIIKRTVGGYIIV 398
                         E++ RG      Y            G   R  GD   R   GY   
Sbjct: 358 --------------ELWVRGDSSAAGYWNRREKTRETFVGEWTRT-GDKYYRDEDGYYWY 402

Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
            GR+DD + + GI  S  E+E        ++LE A +       G      FVVLK G+ 
Sbjct: 403 CGRSDDMLKVSGIWVSPFEVED-ALLQHPAVLEAAVVGA-EDEDGLTKPKAFVVLKDGYQ 460

Query: 459 SQPDKLKMI--FSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLR 505
             P+    +  F K    KL P +K    ++ V E P+TA+ K+ R  LR
Sbjct: 461 PSPELETELKDFVK---DKLAP-YKYPRWIEFVDELPKTATGKIQRFKLR 506

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 87.3 bits (217), Expect = 2e-18
 Identities = 114/548 (20%), Positives = 203/548 (37%), Gaps = 110/548 (20%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           +TY++L    + ++  +  +  +G+ I I +P +V   +  LA++LAG V V +  +   
Sbjct: 8   LTYRKLLTASLALSRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGE 67

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI--PLRE 118
             + +  + +  K + T        R F      L    L+ +V+   G  +     LR 
Sbjct: 68  EGLRSACKQAGIKTVIT-------SRAF------LEKLKLEGLVVLLEGVRIVYLEDLRA 114

Query: 119 QDLSWKD----FLSSVDYHPRPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQ---L 170
           + +S  D    FL++    P       +     D    ILF+SG+ G PK +  +    L
Sbjct: 115 K-ISKADKLKAFLAA--KLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLL 171

Query: 171 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATL--------ALYQG 221
           ++I   A   A IDL   DV         ++G + LF +F L    L         +Y  
Sbjct: 172 ANIDQIA---AVIDLNTEDV---------LLGALPLFHAFGLTVTLLLPLLTGLRVVYYP 219

Query: 222 SPLE-RSFGKFVQDAGVTVLGTVPSLVKAW-RNTNCLEGLDWTKIRSFASTGETSNVDDD 279
           +PL+ +   + ++D   T+L   P+ ++ + RN +     D++ +R     G    + + 
Sbjct: 220 NPLDAKKIAELIRDYKATILCGTPTFLRGYARNAH---PEDFSSLR-LVVAG-AEKLPEA 274

Query: 280 LWLSSKAWYN----AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM----TAGLVI-- 329
                + +       I+E  G TE S          P    + +T       T G  +  
Sbjct: 275 T---RELFEEKFGIRILEGYGATECS----------PVI--SVNTPMGNKPGTVGRPLPG 319

Query: 330 LDECGVPYPDDQPC-VGEVGL--------FPLYLGASDR--LLNADHEEVYFRGMPMYKG 378
           ++   V     +   +GE GL           YL   ++   +    +  Y         
Sbjct: 320 IEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWY--------- 370

Query: 379 MCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 438
                 GDI K    G++ + GR      +GG   S   +E +  +        AA+ V 
Sbjct: 371 ----DTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVP 426

Query: 439 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 498
               G E +V+    +      P++L  I  +A    L  L     +  V E P   S K
Sbjct: 427 DEKKG-EKIVLLTTTEDL---DPEELNAILREAG---LPNLAVPRKILHVDEIPLLGSGK 479

Query: 499 LLRRVLRD 506
              R L+ 
Sbjct: 480 TDYRGLKK 487

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 91/376 (24%), Positives = 143/376 (38%), Gaps = 47/376 (12%)

Query: 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDV-YCWPT-NLGWVMG 202
           D +   L++SGTTG+PK +       +   AE +A   + L+ GD  +        + +G
Sbjct: 91  DDIAYWLYTSGTTGKPKGVMHRHRDPL-TFAEAFARELLGLQPGDRIFSSSKLFFAYGLG 149

Query: 203 PVILFSSFLNGATLALYQGSPL-ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW 261
             +LF  F  GA+  L  G P  E       +    TVL  VP+L +A   +       +
Sbjct: 150 NSLLFPLFS-GASAVLLPGWPTPEAVLDLLAR-HRPTVLFGVPALYRALLESGAGSAPLF 207

Query: 262 TKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFST 320
             +R   S GE   +   L           I++  G TE+   +I      P A    +T
Sbjct: 208 RSVRLCVSAGE--ALPAGLAERWAEATGIEILDGIGSTEVLHIFISNR---PGAARPGTT 262

Query: 321 ATMTAG--LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGM 373
                G    ++DE G   P      G++      L P Y    ++      +       
Sbjct: 263 GRPVPGYEARLVDESGREVPAGTV--GDLWVRGPSLAPGYWNLPEKTQRTLRDGWL---- 316

Query: 374 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 433
                    R GD   R   G+   QGRADD + + G   S +E+E    +   ++ E A
Sbjct: 317 ---------RTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGE-HPAVAEAA 366

Query: 434 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN---PLFKV-SLVKVVP 489
            ++V P   G   L  FVV + G   Q      +  + +   L      +K    ++ + 
Sbjct: 367 VVAV-PDEDGLVRLKAFVVPRPGEAIQQ-----LLERDLHRFLRERLAPYKCPRQIEFLD 420

Query: 490 EFPRTASNKLLRRVLR 505
             PRTA+ KL R  LR
Sbjct: 421 TLPRTATGKLQRFRLR 436

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 82.8 bits (205), Expect = 5e-17
 Identities = 95/381 (24%), Positives = 150/381 (39%), Gaps = 43/381 (11%)

Query: 142 VYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 199
           V +  D  + + F+SGTTG PK +  T         T   W  +DL+  D++    + GW
Sbjct: 77  VTSADDPAL-LYFTSGTTGLPKMVLHTHSYPLGHLVTGAYW--LDLRPDDLHWTIADPGW 133

Query: 200 VMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 256
             G    LF+ +L GA + +Y G     ER+    ++  GVT     P+  +     + L
Sbjct: 134 AKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLEL-LERYGVTTFCAPPTAYRMLLQQD-L 191

Query: 257 EGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 315
              D++ +R   S GE  N +  D W    A    I +  G TE +   +          
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWR--AATGLPIRDGYGQTE-TGLLVANFPGMEVKP 248

Query: 316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHE 366
           G+         + I+D+ G   P  +   G++         GLF  YL       + +  
Sbjct: 249 GSMGRPAPGYRVAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLK------DPEKT 300

Query: 367 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 426
           E   RG   Y        GD   +   GY    GRADD +   G +    E+E    +  
Sbjct: 301 EATIRG-DWY------LTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHP 353

Query: 427 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 485
             + E A +    P  G  EV+  FVVL  G+    ++L     + ++ +  P      +
Sbjct: 354 A-VAEAAVVGSPDPVRG--EVVKAFVVLAPGYQP-SEELAKELQEHVKKRTAPYKYPREI 409

Query: 486 KVVPEFPRTASNKLLRRVLRD 506
           + V E P+T S K+ R  LR 
Sbjct: 410 EFVEELPKTVSGKIRRVELRA 430

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 82.5 bits (204), Expect = 7e-17
 Identities = 89/377 (23%), Positives = 146/377 (38%), Gaps = 43/377 (11%)

Query: 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLKVGDVYCWPT-NLGWVM 201
           D +   +++SGTTG PK +P      +   A  +A+    IDL+  DV+ W   + GW  
Sbjct: 88  DDLFAQMYTSGTTGLPKGVPV----PLNALAAFYAYMRYAIDLRDDDVF-WNIADPGWAY 142

Query: 202 G-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 260
           G    +      G T    +G     +    ++  GVT     P+  +            
Sbjct: 143 GLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAAR 202

Query: 261 WT-KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA-FGAF 318
              K+R  +S GE  N +   W  +      I +  G TE          L  +   G+ 
Sbjct: 203 IKLKLRVASSAGEPLNPEVVRWFQA-NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSM 261

Query: 319 STATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM---PM 375
                   + +LD+ G P  D     GE G   + + +S  L        +F G    P 
Sbjct: 262 GLPLPGYRIAVLDDDGQPLAD-----GEPGQLAIDVASSPLL--------WFSGYWDDPE 308

Query: 376 YKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 431
                +       GD+++R   GY    GRADD +   G +    ++E        ++ E
Sbjct: 309 KTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVES-ALLEHPAVAE 367

Query: 432 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKLNPLFKVSLVKVV 488
            A + V     G E++  FVVLK+G+    +   +L++   K + +   P      V+ V
Sbjct: 368 AAVVGVPDPLRG-EIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYP----REVEFV 422

Query: 489 PEFPRTASNKLLRRVLR 505
           P  P+T S K+ R +LR
Sbjct: 423 PALPKTPSGKIQRFLLR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 82.5 bits (204), Expect = 9e-17
 Identities = 120/532 (22%), Positives = 207/532 (38%), Gaps = 72/532 (13%)

Query: 2   TYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +++EL       AN L       +GD +A+ +P      ++ +A I  G V +       
Sbjct: 43  SFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLT 102

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A++I  RL+ SKAK I T D +               A  + +I        +   L   
Sbjct: 103 AKDILYRLQASKAKCIVTSDEL---------------APAVDSIASEC--PSLKTKLLVS 145

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN----ILFSSGTTGEPKAIPWTQLS-SIR 174
           + S   +L   ++       S  +  V         I F+SGTTG PK    +  S  + 
Sbjct: 146 EHSRDGWL---NFKELLKEASTEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLG 202

Query: 175 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFV 232
               G   +DL   D+    ++ GW+   +  LFS ++ GA + ++     + +   + +
Sbjct: 203 LKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTL 262

Query: 233 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-- 290
               +T   + P++ +     + L    +  +R   + GE  N +       + W     
Sbjct: 263 SKYPITTFCSAPTVYRMLVQQD-LTSYKFKSLRHCVTGGEPLNPEV-----LEQWKAQTG 316

Query: 291 --IIESCGGTE--LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE 346
             + E  G TE  L  A  +G  ++P   G+   A+    + I+D+ G   P      G+
Sbjct: 317 LDLYEGYGQTETGLICANFKGMKIKP---GSMGKASPPYDVQIIDDNGNVLPPGTE--GD 371

Query: 347 VG----------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 396
           +G          LF  Y+   ++       + Y  G             D       GY 
Sbjct: 372 IGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYITG-------------DRGIMDEDGYF 418

Query: 397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 456
              GRADD +N  G +    E+E    +   +++E+A +S SP     EV+  FVVL   
Sbjct: 419 WFVGRADDVINSSGYRIGPFEVESALIE-HPAVVESAVVS-SPDPIRGEVVKAFVVLAPQ 476

Query: 457 FTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 507
           F S  P++L     + ++S   P      V+ V E P+T + K+ R  LRD+
Sbjct: 477 FLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 89/449 (19%), Positives = 145/449 (32%), Gaps = 81/449 (18%)

Query: 2   TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           TY+EL E+   +A  L        GD +A+ +  +   V+  LA++ AG   V +  ++ 
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A  +A  L  + A+ + T                    A   A ++  +     + L   
Sbjct: 61  AERLAFILEDAGARLLLTDS----------------ALASRLAGLVLPVILLDPLELAAL 104

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
           D +           P    Y            ++++SG+TG PK +  T  S +   A  
Sbjct: 105 DDAPAPPPPDAPSGPDDLAY------------VIYTSGSTGRPKGVVVTHRSLVNLLAWL 152

Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDA---- 235
                L   D      +L +      +F + L GATL +      ER     +       
Sbjct: 153 ARRYGLDPDDRVLQFASLSFDASVEEIFGALLAGATLVVPPED-EERDDAALLAALIAEH 211

Query: 236 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS---FASTGETSNVDDDLWLSSKAWYNAII 292
            VTVL   PSL+        L       + S       GE         L+     +   
Sbjct: 212 PVTVLNLTPSLLAL------LAAALPPALASLRLVILGGE--------ALTPAL-VDRWR 256

Query: 293 ESCGGTELSSAY------IQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPD 339
               G  L + Y      +  +        A   + +  G       L +LD+   P P 
Sbjct: 257 ARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPV 316

Query: 340 DQP---CVGEVGLFPLYLGASDRLLNA----DHEEVYFRGMPMYKGMCLRRHGDIIKRTV 392
                  +G  G+   YL      L A            G  +Y      R GD+++   
Sbjct: 317 GVVGELYIGGPGVARGYLN--RPELTAERFVPDPFAGGDGARLY------RTGDLVRYLP 368

Query: 393 GGYIIVQGRADDTMNLGGIKTSSVEIERV 421
            G +   GR DD + + G +    EIE  
Sbjct: 369 DGNLEFLGRIDDQVKIRGYRIELGEIEAA 397

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 125/539 (23%), Positives = 200/539 (37%), Gaps = 107/539 (19%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           +TYK+  E V  VAN L+   SK   IAI +   +  + ++    +AG+  V +   +  
Sbjct: 27  LTYKDWFESVCKVANWLNEKESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQ 86

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
            E+  RL +S A  I T+ + L                 L       I  D         
Sbjct: 87  DELKERLAISNADMIVTERYKLN---------------DLPDEEGRVIEID--------- 122

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS---SIRCTA 177
             WK  +    Y P    Y+P+ N  +A   + F+SG+TG+PKA    Q S   S  C  
Sbjct: 123 -EWKRMIE--KYLPT---YAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNV 176

Query: 178 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS-FLNGATLALYQGSP--LERSFGKF--- 231
                      D +    +   V+    L  S FL GA   LY G    L R F      
Sbjct: 177 H----------DFHMKREDS--VLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVL 224

Query: 232 --VQDAGVTVLGTVPSLVKAWRNTNCL---------EGLDWTKIRSFASTGETSNVDDDL 280
             ++   ++V+ TVP+++++    N +          G  W       +  +  N+    
Sbjct: 225 DKLETENISVMYTVPTMLESLYKENRVIENKMKIISSGAKWEAE----AKEKIKNI---- 276

Query: 281 WLSSKAWYNAIIESCGGTELS---SAYIQGSLLQPQAFG-AFSTATMTAGLVILDECGVP 336
           +  +K +     E  G +ELS   +   + S  +P + G  F         V +  C   
Sbjct: 277 FPYAKLY-----EFYGASELSFVTALVDEESERRPNSVGRPFHN-------VQVRICNEA 324

Query: 337 YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 396
             + Q   GE+G   +Y+ +    +      V  R +     M +R  G   +    G+I
Sbjct: 325 GEEVQK--GEIGT--VYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEE---GFI 377

Query: 397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS-PAGGGPEVLVIFVVLKK 455
            + GR  + +  GGI     EIE V  +    + E   I V     G   V +I    K 
Sbjct: 378 YIVGREKNMILFGGINIFPEEIESVLHEHPA-VDEIVVIGVPDSYWGEKPVAII----KG 432

Query: 456 GFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513
             T Q  +LK         +L+  FK+      V E P T S K+ R   +  I+++  
Sbjct: 433 SATKQ--QLK----SFCLQRLSS-FKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQEK 484

Length = 487

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 89/392 (22%), Positives = 138/392 (35%), Gaps = 94/392 (23%)

Query: 152 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-------- 203
           IL++SGTTG PK +  T    +         + L+  DV            P        
Sbjct: 86  ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVL-------LTPLPLFHINAQA 138

Query: 204 VILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTV---LGTVPSLV-----KAWRNTN 254
             ++++ L GATL L    S     F   V+  G TV   LG + +++           +
Sbjct: 139 YSVYAALLVGATLVLLPRFSA--SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDH 196

Query: 255 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN----AIIESCGGTELSSAYIQGSLL 310
            L       +           +   +W    A+       ++E  G TE     I     
Sbjct: 197 PL-----RFVFGAP-------LPAAIW---PAFEERFGVKLVEGYGMTETGVPIIAP--G 239

Query: 311 QPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV--------GLFPLYLG 355
            P   G       + G         I+DE G   P  +   GE+         +F  Y G
Sbjct: 240 DPAPPG-------SCGRPRPGVEVRIVDEDGREVPPGEV--GELVVRPRRPWAMFKGYYG 290

Query: 356 ASDRLLNADHEEVYFRGMPMYKGMCLRRH-GDIIKRTVGGYIIVQGRADDTMNLGGIKTS 414
             +    A      +R            H GD  +R   G++    R  D +   G   S
Sbjct: 291 MPEATAKA------WRN--------GWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENIS 336

Query: 415 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 474
           S E+E     A  ++ E A ++V    G  EV    VVL+ G T  P+ L + F +    
Sbjct: 337 SYEVEAAI-LAHPAVAEAAVVAVPSELGEDEVKA-VVVLRPGETLDPEAL-LEFCRD--- 390

Query: 475 KLNPLFKV-SLVKVVPEFPRTASNKLLRRVLR 505
           +L P F V   ++ V E P+T + K+ +  LR
Sbjct: 391 RL-PYFMVPRYIEFVDELPKTPTEKIQKAELR 421

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 78.8 bits (195), Expect = 7e-16
 Identities = 87/368 (23%), Positives = 134/368 (36%), Gaps = 38/368 (10%)

Query: 152 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 211
           I+++SG+TGEPK +  +  +          +++L   D         +  G   L ++F 
Sbjct: 7   IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLTAFR 66

Query: 212 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 271
            G TL L       R   K +    +T    VP+        + L   D+  +R   + G
Sbjct: 67  VGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNAG 126

Query: 272 ETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQGSLL--QPQAFGAFSTATMTAGLV 328
                   L L        +    G TE   S Y+    L  +P + G    A     L 
Sbjct: 127 GALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIG---KAIPNVELW 183

Query: 329 ILDECGVPYPDDQPC-VGEVGLF----PL----YLGASDRLLNADHEEVYFRGMPMYKGM 379
           ++DE      D   C  GEVG            Y    +        E   R  P+   +
Sbjct: 184 VVDE------DGNRCAPGEVGELVHRGANVMKGYWNDPEAT-----AER-LRPGPLPGEI 231

Query: 380 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS- 438
            L   GD+++    GY+   GR DD +   G + S  EIE V       + E A I V  
Sbjct: 232 VLYT-GDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPL-VAEAAVIGVPD 289

Query: 439 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASN 497
           P  G  + +V  VV   G +    +L     K  +  L P + V + +  V   P+ A+ 
Sbjct: 290 PLLG--QAIVAVVVSADGESLDEKELL----KHCRKHL-PNYMVPAEIVFVDSLPKNANG 342

Query: 498 KLLRRVLR 505
           K+ R  LR
Sbjct: 343 KVDRSALR 350

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 78.7 bits (195), Expect = 1e-15
 Identities = 119/541 (21%), Positives = 190/541 (35%), Gaps = 116/541 (21%)

Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL E+   +A  L       GD +A+ +  +   V+  LAI+ AG   V +  ++ 
Sbjct: 13  LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYP 72

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A  +A  L  S A+ + T +                                    L   
Sbjct: 73  AERLAFMLEDSGARVLLTDE-----------------------------------SLAPL 97

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIR-CT 176
             + +  L  ++         P    VDA  +  ++++SG+TG PK +       +R   
Sbjct: 98  ARADQLPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVR 157

Query: 177 AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS--FGKFVQD 234
              +  I L   D +   + L +      ++ + LNG  L L     L       + + +
Sbjct: 158 NTNY--IALDPDDRFLQLSPLSFDASTFEIWGALLNGGRLVLIDKETLLDPDRLARLIAE 215

Query: 235 AGVTVLGTVPSLVK--AWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 292
            GVTVL    +L       +   L GL     R     G+  +          A    ++
Sbjct: 216 QGVTVLWLTAALFNQLVDEDPEALAGL-----RQLLVGGDVLSP---------AHVRRVL 261

Query: 293 ESCGGTELSSAYIQGSLLQPQAFGAFSTA-TMTAG-----------------LVILDECG 334
            +C G  L + Y  G    P     FST   +T                   + ILDE G
Sbjct: 262 AACPGLRLINGY--G----PTENTTFSTCHVITRLDEAADSIPIGRPIPNTTVYILDEEG 315

Query: 335 VPYPDDQP---CVGEVGLFPLYLGASDRLLNA----DHEEVYFRGMPMYKGMCLRRHGDI 387
            P P   P    VG  GL   YL   +  L A         +  G  +Y      R GD+
Sbjct: 316 QPVPIGVPGELYVGGDGLALGYLNRPE--LTAERFVPDP--FGPGERLY------RTGDL 365

Query: 388 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 447
            +    G I   GR D  + + G +    EIE+   Q     +  AA+ V     G + L
Sbjct: 366 ARWRPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPG--VREAAVLVREDAAGDKRL 423

Query: 448 VIFVVLKKGFTSQPDKLKMIFSKAIQSKLN---PLFKV-SLVKVVPEFPRTASNKLLRRV 503
           V +VV +    +            +++ L    P + V +   V+ E P TA+ K+ RR 
Sbjct: 424 VAYVVARGALDAA----------ELRAHLAERLPAYMVPAAFVVLDELPLTANGKVDRRA 473

Query: 504 L 504
           L
Sbjct: 474 L 474

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 94/382 (24%), Positives = 148/382 (38%), Gaps = 61/382 (15%)

Query: 152 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT-NLGWVMGPVI-LFSS 209
           + F+SGTTG+PK +     + +   A     +DL+  DVY W T + GWV G    + + 
Sbjct: 94  LHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY-WCTADPGWVTGTSYGIIAP 152

Query: 210 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSF 267
            LNG TL + +G      +   +++  VTV  T P+ ++             D + +R  
Sbjct: 153 LLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHI 212

Query: 268 ASTGETSNVDDDLWLSSK-------AWYN----AI-IESCGGTELSSAYIQGSLLQPQAF 315
           AS GE  N +  +W            W+     AI I +  G  +      GS+ +P   
Sbjct: 213 ASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKP----GSMGRP--L 266

Query: 316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-------FPLYLGASDRLLNADHEEV 368
                A +       D         Q  VGE+ L       F  YLG  +R         
Sbjct: 267 PGIEAAVIERD---GDGLTPVTGPGQ--VGELALKPGWPSMFRGYLGNEERY------AS 315

Query: 369 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADES 428
            F     Y        GD+  R   GY    GRADD +   G      E+E         
Sbjct: 316 SFVD-GWY------LTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESA------- 361

Query: 429 ILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 483
           ++E  A++ +   G P     E++  FV L+ GF    ++L+       + +L       
Sbjct: 362 LMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEP-SEELRRELLTFARQRLGAAVAPR 420

Query: 484 LVKVVPEFPRTASNKLLRRVLR 505
            +  V   P+T S K++RR+L+
Sbjct: 421 EIHFVDNLPKTRSGKIMRRLLK 442

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 76.4 bits (188), Expect = 8e-15
 Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 48/374 (12%)

Query: 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNLGWV--MG 202
           D V  I F+SGTTG PK         I    + +    L+    DV+     L +   +G
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFH-RDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLG 205

Query: 203 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN-TNCLEGLDW 261
            ++LF      + + L Q +P      K +Q+   T+L T P+   A+R     ++  D 
Sbjct: 206 GLVLFPLRFGASAVLLEQATP--PLLLKAIQEHRATILFTAPT---AYRAMLIKVKAFDI 260

Query: 262 TKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGS--LLQPQAF 315
           + +R   S GET  +   +W   + WY      II+  G TE+   +I  +    +P A 
Sbjct: 261 SSLRKCVSAGET--LPAKVW---QDWYERTGLKIIDGIGATEMLHIFISANEENAKPGAT 315

Query: 316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM 375
           G        A   I+D+ G   P      GE G   +      R L+ + ++ Y R    
Sbjct: 316 G-KPVPGYEA--RIVDDQGNEVPR-----GEAGRLAVRGPTGCRYLDDERQQEYVRDGWN 367

Query: 376 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 435
                    GDI ++   GY     R+DD +   G   ++ E+E         + E A I
Sbjct: 368 VT-------GDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLT-HPDVAECAVI 419

Query: 436 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ----SKLNPLFKVSLVKVVPEF 491
            V P     +++   +VL+ G  ++  +L    ++ +Q    + + P      +  V   
Sbjct: 420 GV-PDEERGQIVCAHIVLRDG--TKATEL---LAERLQDFVKAVIAPYKYPREINFVDAL 473

Query: 492 PRTASNKLLRRVLR 505
           P+T + K+ R  LR
Sbjct: 474 PKTQTGKIQRFRLR 487

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 43/261 (16%)

Query: 1   MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL   V  +A  L      KGD + +  P ++   +++LA++ AG  VV+ A+   
Sbjct: 33  LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAG-AVVTTANPLY 91

Query: 60  -AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 118
              EIA +++ S AK   T            L  K+   A    ++L +  +        
Sbjct: 92  TPAEIAKQVKDSGAKLAITTS---------ELAEKLASLALEPVVLLDSADDGSA----- 137

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRC 175
                   +  + +   P     V    D    + +SSGTTG  K +  T    ++++  
Sbjct: 138 -------AIDDLLFADEPEPPVVVIKQDDVAA-LPYSSGTTGRSKGVMLTHRNLIANVAQ 189

Query: 176 TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL----ERSFGKF 231
              G    +    DV      +  + G     +  L      L  G+ +         KF
Sbjct: 190 LVAGEG-PNFDREDVTLCVLPMFHIYG----LTVILLA---LLRLGATVVVMPRFDLEKF 241

Query: 232 ---VQDAGVTVLGTVPSLVKA 249
              ++   VT L  VP +V A
Sbjct: 242 LAAIEKYKVTHLPVVPPIVLA 262

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 118/518 (22%), Positives = 201/518 (38%), Gaps = 53/518 (10%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y EL  QV  +  AL  +   + + + + M   V   I +L  I AG V V++     
Sbjct: 31  LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A + A  L  S+A+ +F    +L      P+    LG +P     +     + G      
Sbjct: 91  ADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVGRPEAG------ 138

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
           ++   + L++         + P     D     L+SSG+TG PK +  T  S+   TAE 
Sbjct: 139 EVQLAELLAT-----ESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTH-SNPYWTAEL 192

Query: 180 WAH--IDLKVGDVYCWPTNL--GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDA 235
           +A   + ++  DV      L   + +G  + F   + GAT  L    P   +    ++  
Sbjct: 193 YARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSV-GATTVLMGERPTPDAVFDRLRRH 251

Query: 236 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIES 294
             T+   VP+L  A      L   D  ++R   S GE   +  ++    +A +   I++ 
Sbjct: 252 QPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEA--LPAEVGQRWQARFGVDIVDG 309

Query: 295 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFPL 352
            G TE+   ++      P      ++     G  L ++ + G          GE G   +
Sbjct: 310 IGSTEMLHIFLSN---LPGDVRYGTSGKPVPGYRLRLVGDGGQDVAA-----GEPGELLI 361

Query: 353 YLGASDRLL--NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 410
              +S  +   N       F+G          R GD   R   G     GR DD + + G
Sbjct: 362 SGPSSATMYWNNRAKTRDTFQGE-------WTRSGDKYVRNDDGSYTYAGRTDDMLKVSG 414

Query: 411 IKTSSVEIERVCDQADESILETAAISVSPAGG--GPEVLVIFVVLKKGFTSQPDKLKMIF 468
           I  S  EIE        ++LE A + V    G   P+    F+VL+ G       L+   
Sbjct: 415 IYVSPFEIESAL-IQHPAVLEAAVVGVEDEDGLIKPKA---FIVLRPGQDI-DTALETEL 469

Query: 469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
            + ++ +L P      +  V + P+TA+ K+ R  LR+
Sbjct: 470 KEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 73.3 bits (181), Expect = 3e-14
 Identities = 105/402 (26%), Positives = 144/402 (35%), Gaps = 99/402 (24%)

Query: 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNL----GWVM 201
           D    I ++SGTTG PK    T  + +       A    L  GD    P  L    G V+
Sbjct: 2   DDPALIQYTSGTTGRPKGAMLTHRNVLN-NGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60

Query: 202 GPVILFSSFLNGATLALYQGSPLERSFGKF--------VQDAGVTVLGTVPSLVKAWRNT 253
           G   + +S   GATL L +         KF        ++   +T L  VP++  A    
Sbjct: 61  G---VLASLTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIA---- 104

Query: 254 NCLEGLDWTK-----IRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQ 306
             LE  D+ K     +R+  S G  + V  +L    +  +    I    G TE S    Q
Sbjct: 105 -LLEHPDFDKFDLSSLRTGISGG--APVPPELVRRIREEFPMAEITTGYGMTETSGVGTQ 161

Query: 307 GSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNAD 364
            S   P     +     T G  +   E  +  PD      GEVG                
Sbjct: 162 TSGDDP-----YEDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVG---------------- 200

Query: 365 HEEVYFRGMPMYKG---------------MCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 409
             E+  RG  + KG                 L   GD+      GY+ + GR  D +  G
Sbjct: 201 --EICVRGYSVMKGYYNDPEATAEAIDADGWLHT-GDLGYMDEDGYLRIVGRIKDMIIRG 257

Query: 410 GIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKL 464
           G      EIE         + E A + V      P     EV+  FVVLK G T   ++L
Sbjct: 258 GENIYPAEIEEALLTHPA-VAEAAVVGV------PDERLGEVVAAFVVLKPGATLTEEEL 310

Query: 465 KMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLR 505
                   + +L   FKV   V+ V E PRTAS K+ +  LR
Sbjct: 311 I----AFCRGRLAR-FKVPRYVRFVDELPRTASGKIQKFKLR 347

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 74.5 bits (184), Expect = 4e-14
 Identities = 82/291 (28%), Positives = 127/291 (43%), Gaps = 46/291 (15%)

Query: 2   TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TYKEL+E     AN L +    KGD + I MP         L  +  G +V  + ++F  
Sbjct: 75  TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFME 134

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQ 119
             +  RL  S+AK + T   +L          K     P LK ++L  +G DV       
Sbjct: 135 EAVRDRLEDSEAKVLITTPALLE--------RKPADDLPSLKHVLL--VGEDVEEGPGT- 183

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPV-----DAVVNIL-FSSGTTGEPKAIPWTQLSSI 173
                     +D++      S  ++       D    IL ++SG+TG+PK +     + +
Sbjct: 184 ----------LDFNALMEQASDEFDIEWTDREDGA--ILHYTSGSTGKPKGVLHVHNAML 231

Query: 174 RCTAEG-WAHIDLKVGDVYCWPT-NLGWVMGPVI-LFSSFLNGATLALYQG--SPLERSF 228
           +    G +  +DL   DVY W T + GWV G    +F+ +LNGAT  +  G  SP ER +
Sbjct: 232 QHYQTGKYV-LDLHEDDVY-WCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSP-ERWY 288

Query: 229 GKFVQDAGVTVLGTVPS----LVKAWRNTNCLEGLDWTKIRSFASTGETSN 275
              ++D  VTV  T P+    L+ A    + ++  D + +R   S GE  N
Sbjct: 289 R-ILEDYKVTVWYTAPTAIRMLMGA--GDDLVKKYDLSSLRHILSVGEPLN 336

Length = 570

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 91/364 (25%), Positives = 149/364 (40%), Gaps = 26/364 (7%)

Query: 152 ILFSSGTTGEPKAI--PWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFS 208
           ++++SGTTG PK        L       E +  +  + GDV+  P +  W+ G + +L  
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGLLDVLLP 152

Query: 209 SFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS 266
           +   G  +  Y+      ER+F   ++  GVT     P+ +K  R           ++R+
Sbjct: 153 ALYFGVPVVAYRMQRFDPERAF-ALMRRYGVTNAFLPPTALKMMRRVGSERARYDLRLRA 211

Query: 267 FASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG 326
            AS GE+   +   W +       + E  G TE +      + L P   G+         
Sbjct: 212 VASGGESLGEELLEW-ARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHE 270

Query: 327 LVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL----NADHEEVYFRGMPMYKGMCLR 382
           + ++D+ G P P      GEVG   +        L    N +     F G  +       
Sbjct: 271 VAVVDDAGRPVP-----PGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWL------- 318

Query: 383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 442
             GD+ +R   GY+  +GRADD +   G +    EIE  C     ++LE A + V     
Sbjct: 319 LTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEE-CLLKHPAVLEAAVVGVPDPER 377

Query: 443 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 502
           G E++  FVVL +G     D+L     + ++S+L        ++ V E P T + K+ RR
Sbjct: 378 G-EIVKAFVVLAEGVEP-SDELATELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRRR 435

Query: 503 VLRD 506
            LR 
Sbjct: 436 ELRR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 72.8 bits (178), Expect = 1e-13
 Identities = 121/547 (22%), Positives = 216/547 (39%), Gaps = 76/547 (13%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +T+    ++V   AN L  +   KGD +AI +P   +AVI Y   +LAG +VV     + 
Sbjct: 50  ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            RE+  +L  S AK I   D +      FP  + V  A  ++ +++  I + +  P   +
Sbjct: 110 ERELEYQLHDSGAKVILCLDLV------FPRVTNVQSATKIEHVIVTRIADFLPFP---K 160

Query: 120 DLSW-------KDFLSSVDYHPRPNYYSPVYNPVDAVVNIL-----------FSSGTTGE 161
           +L +        + +  V      + ++ V   V+  V +            ++ GTTG 
Sbjct: 161 NLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGF 220

Query: 162 PKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLAL 218
           PK +  T  + +  T  G  W +   +  +V         V G   ++  S + G  + L
Sbjct: 221 PKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVL 280

Query: 219 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 278
                ++  F + ++   VT+    P++  A  N+  L+  D + IR+  S      V+ 
Sbjct: 281 IPKFDMKMVF-EAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEV 339

Query: 279 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 338
                +      ++E  G TE S       L + +  G+                GVP+P
Sbjct: 340 QEKFETVTG-GKLVEGYGLTESSPVTHSNFLWEKRVPGSI---------------GVPWP 383

Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR-------------RHG 385
           D +  +       + L   + L   +  E+  +G  + KG   +               G
Sbjct: 384 DTEAMI-------MSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTG 436

Query: 386 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 445
           D+      G+  V+ R  D +   G      E+E V  + ++ + E   I V     G E
Sbjct: 437 DVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEK-VQEVVTIGVPDPYRG-E 494

Query: 446 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV-KVVPEFPRTASNKLLRRVL 504
            +  FVVLK+G     ++L     K + +     +KV  V +   E P+T   K+LRRVL
Sbjct: 495 TVKAFVVLKEGTECSEEELNQFARKYLAA-----YKVPKVYEFRDELPKTTVGKILRRVL 549

Query: 505 RDQIKHE 511
            ++ K +
Sbjct: 550 IEEEKRK 556

Length = 563

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 92/392 (23%), Positives = 141/392 (35%), Gaps = 80/392 (20%)

Query: 147 DAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDV-YCWPTNLGWVMG 202
           D    IL +SGTTG PK +P T    L+S R  A+      L   D           VM 
Sbjct: 2   DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHK---LTPSDRCLN-------VMP 51

Query: 203 P-------VILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRN 252
                   V L ++ L G ++      P + S  KF   +    VT    VP++ +    
Sbjct: 52  LFHIHGLIVSLLATLLAGGSVVC----PPKFSASKFWDDIAKYRVTWYSAVPTIHQILLK 107

Query: 253 T-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI------ 305
           T     G    ++R F  +         L    K +   ++E+ G TE +          
Sbjct: 108 TAKPNPGKPPPRLR-FIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPP 166

Query: 306 ----QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGA 356
                GS+ +P              + ILD+ G P P  Q   GE+ +        YL  
Sbjct: 167 LVRKPGSVGRPAG----------VEVAILDDDGRPLPPGQ--EGEIVIRGPNVTAGYLNN 214

Query: 357 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 416
            +    A  +  +FR             GD+      GY+ + GR  + +N GG K S  
Sbjct: 215 PEANREAFRDG-WFRT------------GDLGYLDEDGYLFLTGRIKELINRGGEKISPR 261

Query: 417 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 475
           E+E V  +    + E     V     G  E +   VVL+       ++L+     A +  
Sbjct: 262 EVEEVLLRHPA-VAEAVVFGVPDELYG--EEVAAAVVLRADSKVTIEELR---DFARKRL 315

Query: 476 LNPLFKV-SLVKVVPEFPRTASNKLLRRVLRD 506
               FKV   +  V   P+ A+ K+ RR L +
Sbjct: 316 A--AFKVPKKILFVDALPKGATGKIQRRKLAE 345

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 71.3 bits (176), Expect = 2e-13
 Identities = 97/387 (25%), Positives = 145/387 (37%), Gaps = 73/387 (18%)

Query: 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 206
           D    IL++SGTTG PK +  T  + +       A +DL  GDVY     L  +  P  L
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVY-----L--LAAP--L 51

Query: 207 FSSFLNGATL-ALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLEG 258
           + +      L AL  G    L   F        ++   VT    VP++ +          
Sbjct: 52  YHAAGGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFAR 111

Query: 259 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAF-- 315
            D + +R        + +  +L  +   W+  +  +  G TE        +LL P+ +  
Sbjct: 112 YDLSSLRLIIYGA--APMPAELKRAMIEWFGPVFVQGYGMTETGPT---TTLLSPEDWLR 166

Query: 316 --GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG- 372
             G+         + I+DE G   P      GEVG                  E+  RG 
Sbjct: 167 KLGSVGRPVPGVEVRIVDEDGRELP-----PGEVG------------------EIVVRGP 203

Query: 373 --MPMYKGM------CLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
             M  Y          LR      GD+      GY+ +  R  D +  GG      E+E 
Sbjct: 204 AVMAGYWNRPEATAEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVEN 263

Query: 421 VCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 479
           V      ++ + A I V     G  E +V  VVL+ G T   ++L   F +    +L   
Sbjct: 264 VLLA-HPAVADVAVIGVPDEEWG--EAVVAVVVLRPGATLDAEELIA-FCRE---RLAG- 315

Query: 480 FKV-SLVKVVPEFPRTASNKLLRRVLR 505
           +KV   V+ V E PR AS K+L+R LR
Sbjct: 316 YKVPKSVEFVDELPRNASGKILKRELR 342

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 99/477 (20%), Positives = 170/477 (35%), Gaps = 85/477 (17%)

Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY+EL E+V  +A+ L       GD +AI         I  LAI+  G V V I  +  
Sbjct: 46  ITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTST 105

Query: 60  AREIATRLRVSKAKGIFTQD------FILRGGRKFPLYSKVLGAAPLKAIVLP-----AI 108
             ++A  L  S++K IF ++       +        +   ++    ++  V        +
Sbjct: 106 PEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEV 165

Query: 109 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 168
             D GI L   D        S     R     P     D +  I+++SGTTG PK +  T
Sbjct: 166 FPDEGISLFLID--------SAGLEGRIAPPKP-----DDLATIIYTSGTTGTPKGVMLT 212

Query: 169 QLSSIRCTAEGWAHID-LKVGDVY-CW-PTNLGWVMGPVILFSSFLNGATLALYQGSPLE 225
             + +   A     +  +  GD    + P  L  +          L G    L++  P  
Sbjct: 213 HRNLLAQVAGIDEVLPPIGPGDRVLSFLP--LAHIFERAFEGGLALYGGVTVLFKEDP-- 268

Query: 226 RSFGKFVQDAGVTVLGTVPSL------------VKAWRNTNCL-EGLDWTKIRSFASTGE 272
           R+  + +++   TV+  VP +             KA      L         +  +    
Sbjct: 269 RTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALL 328

Query: 273 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA----------- 321
                  L ++ +  +  I ++ GG  +  A   G+ L P+    F  +           
Sbjct: 329 GGGPLSWLLVADRLVFRKIRDALGG-RIRYALSGGAPLSPEL-LHFFRSLGIPILEGYGL 386

Query: 322 TMTAGLVILDECGVPYPDDQPCVGEVG-LFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 380
           T T+ +V ++      P D+  +G VG   P   G   ++  AD  E+  RG  + KG  
Sbjct: 387 TETSAVVSVN------PPDRFVLGTVGKPLP---GIEVKI--ADDGEILVRGPNVMKGYY 435

Query: 381 LR--------------RHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVC 422
                           R GD+ +    GY+++ GR  + + L  G   +   IE   
Sbjct: 436 KNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKL 492

Length = 613

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 125/564 (22%), Positives = 222/564 (39%), Gaps = 99/564 (17%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYV 50
           +TY +L E+V   +  L  +  SK D + I M  T+  +I  L+         ++  GY 
Sbjct: 93  LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152

Query: 51  VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI----VLP 106
           V S+ D      I  +L ++   GI   + I      F     +  A  L       V+ 
Sbjct: 153 VKSLIDRI--ETITPKLIITTNYGILNDEII-----TFT--PNLKEAIELSTFKPSNVIT 203

Query: 107 AIGNDV----------GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV--VNILF 154
              ND+           IP     LSW D +  +  + +  +Y   Y PV++   + IL+
Sbjct: 204 LFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYE--YVPVESSHPLYILY 261

Query: 155 SSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 213
           +SGTTG  KA+  +    +      W + I+  +  V    +++GWV     L+ S   G
Sbjct: 262 TSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLG 321

Query: 214 ATLALYQG-----SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 268
            T  +++G       +E      ++   VT   T+P  ++    T+     + T IR   
Sbjct: 322 NTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP----EATIIR--- 374

Query: 269 STGETSNVDDDLWLSSKAWYNAI---IES---------CGGTELSSAYIQGSLLQPQAFG 316
           S  + SN+  ++W   +    +I   IE+          G TE+   Y+         +G
Sbjct: 375 SKYDLSNL-KEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYC-------YG 426

Query: 317 AFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 369
             +      G+        IL E G     ++  +GEV  F L +  S       ++E +
Sbjct: 427 HINIPYNATGVPSIFIKPSILSEDGKELNVNE--IGEVA-FKLPMPPSFATTFYKNDEKF 483

Query: 370 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 429
            +    + G      GD+  +   GY  +  R+DD + + G K     IE        SI
Sbjct: 484 KQLFSKFPGY--YNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIE-------TSI 534

Query: 430 L------ETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPLF 480
           L      E  +I +        V +  +VLK+  ++Q    +KLK   +  I   +  L 
Sbjct: 535 LKHPLVLECCSIGIYDPDCY-NVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLA 593

Query: 481 KVSLVKVVPEFPRTASNKLLRRVL 504
            +  + +V + P+T + K+ R+++
Sbjct: 594 VLRKIIIVNQLPKTKTGKIPRQII 617

Length = 647

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 108/456 (23%), Positives = 172/456 (37%), Gaps = 95/456 (20%)

Query: 95  LGAAPLKAIVLPA-----IGNDVGIPLREQDLSWKDFLSSVDYH---PRPNYYSPVYNPV 146
           L A+ L A++  A     +G+D     R        F++S D       P        P 
Sbjct: 81  LSASELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASADALEPADTP------SIPP 134

Query: 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 206
           + V  ILF+SGT+G+PK +  ++  +++ TA                  N G V+G V  
Sbjct: 135 ERVSLILFTSGTSGQPKGVMLSE-RNLQQTA-----------------HNFG-VLGRVDA 175

Query: 207 FSSFL--------------------NGATLALYQGSPLERSFGKFV-QDAGVTVLGTVPS 245
            SSFL                     G ++ +  G   +R+ G+      G+T    VP 
Sbjct: 176 HSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQ 235

Query: 246 LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA-- 303
           + +A+R     +      + +  + G     +D L      W +  I    G  +S A  
Sbjct: 236 MAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILG-----WLDDGIPMVDGFGMSEAGT 290

Query: 304 ----YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYL 354
                +   +++ +A GA    T T    ++D+ G   P   P  GE+      L P Y 
Sbjct: 291 VFGMSVDCDVIRAKA-GAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPGYW 347

Query: 355 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 414
                   A   + +FR             GDI +R   G+  V  R  D    GG    
Sbjct: 348 RRPQATARAFTGDGWFRT------------GDIARRDADGFFWVVDRKKDMFISGGENVY 395

Query: 415 SVEIERVCDQADE-SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 473
             EIE V   AD   I E A + ++ A  G EV  + +V   G     ++++   S  + 
Sbjct: 396 PAEIEAVL--ADHPGIRECAVVGMADAQWG-EVGYLAIVPADGAPLDLERIRSHLSTRLA 452

Query: 474 SKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQI 508
                 +KV   +++V   PRTAS KL +  LRD +
Sbjct: 453 K-----YKVPKHLRLVDALPRTASGKLQKARLRDAL 483

Length = 488

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 65.6 bits (160), Expect = 5e-11
 Identities = 90/382 (23%), Positives = 139/382 (36%), Gaps = 49/382 (12%)

Query: 147  DAVVNILFSSGTTGEPK--AIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 204
            D +  ++++SG+TG+PK  AI    L++  C       + L   D     +   + +G  
Sbjct: 656  DNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAER--LQLAADDSMLMVSTFAFDLGVT 713

Query: 205  ILFSSFLNGATLAL--YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 262
             LF +  +GATL L     +    +F   + D GVTVL  VPS ++A    + +      
Sbjct: 714  ELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALP--R 771

Query: 263  KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTA 321
              R+    GE   VD    + +      +I   G TE +       L  + + FG     
Sbjct: 772  PQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIG 831

Query: 322  TMTA--GLVILDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPM 375
               A  GL ILD    P P     VGE     LY+G    A             F   P 
Sbjct: 832  QPLANLGLYILDHYLNPVP--VGVVGE-----LYIGGAGLARGYHRRPALTAERFVPDPF 884

Query: 376  -YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 434
               G  L R GD+ +    G I   GR D  + + G +    EIE     A   + E   
Sbjct: 885  GADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIE-ARLLAQPGVREAVV 943

Query: 435  ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEF--- 491
            ++     G    LV ++V                   +++         L +V+P++   
Sbjct: 944  LAQPGDAG--LQLVAYLVPAAVADGAE---HQATRDELKA--------QLRQVLPDYMVP 990

Query: 492  ---------PRTASNKLLRRVL 504
                     P T + KL R+ L
Sbjct: 991  AHLLLLDSLPLTPNGKLDRKAL 1012

Length = 3956

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 64.1 bits (157), Expect = 6e-11
 Identities = 116/550 (21%), Positives = 181/550 (32%), Gaps = 165/550 (30%)

Query: 1   MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL+E+   +A  L  +    GD +A+    +  A    LA + AG   V +  S  
Sbjct: 17  LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPSQP 76

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A     R+                         K+L AA   A+V               
Sbjct: 77  A----ERIA------------------------KILEAAGPAALV--------------- 93

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
                         P    Y            ILF+SG+TG+PK +  +     S +   
Sbjct: 94  ------------ADPDDLAY------------ILFTSGSTGKPKGVQISHANLASFL--- 126

Query: 177 AEGWAHIDLKVGDVYCWPTNLGWVMGPVI--------------LFSSFLNGATLAL---- 218
              W   D  + +            G V               LF +  +GATL +    
Sbjct: 127 --DWMVEDFDLTE------------GDVFSNQAPFSFDLSVFDLFPALASGATLYVIPKE 172

Query: 219 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 278
               PL     +F+++ G+TV  +VPS       +  L       +R+F   GE      
Sbjct: 173 QIADPLA--LFEFLKEHGLTVWVSVPSFASLLLLSRELNPESLPSLRTFLFCGEVLPKKL 230

Query: 279 DLWLSSKAWYNA-----IIESCGGTELSSA--YIQGSLLQPQAFG------AFSTATMTA 325
                +KA         II   G TE + A    + +                       
Sbjct: 231 -----AKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLR--- 282

Query: 326 GLVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFR--GMPMYKGMC 380
             +ILDE G P P  +     +    + P YL   ++       + +F+  G   Y    
Sbjct: 283 -ALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEK-----TAKAFFQDEGQRWY---- 332

Query: 381 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL------ETAA 434
             R GD++     G ++  GR D  + L G +   +E+E +     E+ L      E A 
Sbjct: 333 --RTGDLVYLEDDGLLVYLGRKDFQIKLHGYR---IELEEI-----EAALRALPGVEEAV 382

Query: 435 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT 494
           +   P G     LV FVV K+G       LK    K ++ +L P         +   P  
Sbjct: 383 VLPVPKGEKVVRLVAFVVGKEGALD-TKALK----KELKKRLPPYMIPRRFVYLDSLPLN 437

Query: 495 ASNKLLRRVL 504
           A+ K+ R+ L
Sbjct: 438 ANGKIDRKAL 447

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 64.1 bits (157), Expect = 6e-11
 Identities = 118/531 (22%), Positives = 196/531 (36%), Gaps = 66/531 (12%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY +   +V  +ANAL+++    GD +A     T R + +Y A+   G V+ ++    + 
Sbjct: 27  TYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSP 86

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQ 119
            +IA  +  ++ K IF  D  L      PL   +    P +KA+V+    +     L   
Sbjct: 87  EQIAYIINHAEDKVIFVDDDFL------PLLEAIAPRLPTVKAVVVYDDADMPETSL-PN 139

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-----R 174
             ++++ L        P Y  P  +   A   + ++SGTTG PK + ++  S +      
Sbjct: 140 VYAYEELLEEES----PEYEWPELDENTAAG-LCYTSGTTGNPKGVVYSHRSLVLHTLAS 194

Query: 175 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 234
              +      L   D       +  V    + +++ + GA L L        S    +++
Sbjct: 195 ALPDSLG---LSESDTVLPVVPMFHVNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEE 251

Query: 235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 292
             VTV   VP++     N     G D + +R     G          L  K       +I
Sbjct: 252 EKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSAL----PRSLIEKLEERGVEVI 307

Query: 293 ESCGGTELS----SAYIQGSLLQPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQ 341
            + G TE S     + ++  L+               G         I+D+ G   P D 
Sbjct: 308 HAWGMTETSPLGTVSRLKPHLVDLPEEEKLE-LRAKQGRPVPGVELRIVDDEGNELPWDG 366

Query: 342 PCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 396
             VGE+      +   Y        + +  E   R           R GD+      GYI
Sbjct: 367 KTVGELVVRGPWVTGSYYK------DPEKTEELTRDGWF-------RTGDVAVIDEDGYI 413

Query: 397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKK 455
            +  RA D +  GG   SSVE+E        ++ E A + V     G  E  +  VVLK 
Sbjct: 414 QITDRAKDVIKSGGEWISSVELENALMAH-PAVAEAAVVGVPHEKWG--ERPLAVVVLKP 470

Query: 456 GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
           G     ++L    +K +     P      V  V E P+T+  K  ++ LR+
Sbjct: 471 GAKVTEEELLEHLAKKVAKWWLP----DRVVFVDEIPKTSVGKFDKKALRE 517

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 92/436 (21%), Positives = 148/436 (33%), Gaps = 66/436 (15%)

Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL  +   +A  L       G+ +AI    ++  V+  LA++ AG   V +   + 
Sbjct: 253 LTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYP 312

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A  +A  L  S+   + TQ                               +DVG+P    
Sbjct: 313 AERLAYILEDSRPTLLLTQA--------------------------HLRVDDVGLPGLAL 346

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
           D +  +   +           P     DA+  I+++SG+TG+PK +     +      + 
Sbjct: 347 DDALSEIPDTDP--------IPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDA 398

Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLAL----YQGSPLERSFGKFVQDA 235
            A   L   D      +L +      +F + L GA L L     Q  P      + ++  
Sbjct: 399 GARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAA--LLELLEAQ 456

Query: 236 GVTVLGTVPSLVK--AWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 293
           G+TVL  VP L++                ++R   S GE   +     L   A     + 
Sbjct: 457 GITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLL 516

Query: 294 SCGG-----TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC--VGE 346
           +  G      +  S  I   L      G     T    L ILD+         P    GE
Sbjct: 517 NLYGPTEATLDAPSFPISAELESRVPIGRPVANTQ---LYILDQ----GLRPLPLGVPGE 569

Query: 347 VGLFPLYLGASDRLLNADH-EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT 405
           + +  L L A   L   D   E +     +Y      R GD+ +    G +   GR D  
Sbjct: 570 LYIAGLGL-ALGYLNRPDLTAERFIAL-RLY------RTGDLARPLADGALEYLGRKDSQ 621

Query: 406 MNLGGIKTSSVEIERV 421
           + + G +    EIE  
Sbjct: 622 VKIRGFRIELGEIEAA 637

Length = 642

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 62.5 bits (153), Expect = 2e-10
 Identities = 87/393 (22%), Positives = 136/393 (34%), Gaps = 85/393 (21%)

Query: 152 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG-----WVMGPVIL 206
           ++++SG+TG PK +       +   A       L  GD      +       W      +
Sbjct: 98  VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWE-----I 152

Query: 207 FSSFLNGATLALY----QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 262
           F   L+GATL L        P      + +++  +TVL  VPSL++A  +      L   
Sbjct: 153 FPPLLSGATLVLAPPEVLRDPEA--LAELLREHRITVLHLVPSLLRALLDALEPAAL--P 208

Query: 263 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQGSLLQPQAFG 316
            +R     GE                    E   G  L +AY      +  +  +     
Sbjct: 209 SLRLVIVGGEA---------LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDP-D 258

Query: 317 AFSTATMTAG-------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHE 366
                ++  G       + +LDE   P P   P    +G  G+   YL   +  L A+  
Sbjct: 259 DLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPE--LTAER- 315

Query: 367 EVYF-------RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD-------TMNLGGIK 412
              F        G  +Y      R GD+ +    G +   GRADD        + LG   
Sbjct: 316 ---FVPDPFGGPGERLY------RTGDLARWLPDGNLEFLGRADDQVKIRGYRIELG--- 363

Query: 413 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 472
               EIE     A   + E A +     G G + LV +VV   G      +L+      +
Sbjct: 364 ----EIEAAL-LAHPGVRE-AVVVAREDGAGEKRLVAYVVPAAGAELDAAELR----AFL 413

Query: 473 QSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVL 504
             +L P + V S   V+   P T + K+ R+ L
Sbjct: 414 AERL-PDYMVPSAFVVLDALPLTPNGKVDRKAL 445

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 134/574 (23%), Positives = 200/574 (34%), Gaps = 141/574 (24%)

Query: 2   TYKELREQVMLVAN-ALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY  L      +AN  L      GD +A  +P      IIYLA +  G V V +  S+  
Sbjct: 51  TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110

Query: 61  REIATRLRVSKAKGIFT---------QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 111
            E+   L   +AK  F           D IL    + P   +++G   L     PA    
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLA----PAT--- 163

Query: 112 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPW 167
                    LS    ++          Y P+   +    D +  +LF+SGT G PK +  
Sbjct: 164 -------SSLSLSQIIAD---------YEPLTTAITTHGDELAAVLFTSGTEGLPKGVML 207

Query: 168 TQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL 224
           T    L+S R                YC   NL W    V +  + L  AT  L+     
Sbjct: 208 THNNILASER---------------AYCARLNLTW--QDVFMMPAPLGHATGFLH----- 245

Query: 225 ERSFGKFVQDAGVT---VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLW 281
                      GVT   ++G    L+  +    CL  L+  + R     G T  + D L 
Sbjct: 246 -----------GVTAPFLIGARSVLLDIFTPDACLALLE--QQRCTCMLGATPFIYDLLN 292

Query: 282 LSSKAWYNAIIES-----CGGTELSSAYIQ-----GSLLQPQAFGAFSTATMTAGLVILD 331
           L  K   +  + +     CGGT +     +     G  L    +G  ST +    +V LD
Sbjct: 293 LLEKQPAD--LSALRFFLCGGTTIPKKVARECQQRGIKLL-SVYG--STESSPHAVVNLD 347

Query: 332 EC--------GVPYP-------DDQ----PCVGEVG--------LFPLYLGASDRLLNAD 364
           +         G           D+     P  G  G        +F  YL   +    A 
Sbjct: 348 DPLSRFMHTDGYAAAGVEIKVVDEARKTLPP-GCEGEEASRGPNVFMGYLDEPELTARAL 406

Query: 365 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 424
            EE ++     Y        GD+ +    GYI + GR  D +  GG   SS E+E +  Q
Sbjct: 407 DEEGWY-----YS-------GDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQ 454

Query: 425 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP--DKLKMIFSKAIQSKLNPLFKV 482
               I +   +++     G E    +VVLK    S    + +     K +     P    
Sbjct: 455 H-PKIHDACVVAMPDERLG-ERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYP---- 508

Query: 483 SLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 516
             + V+ + PRTAS K+ + +LR  I   L+   
Sbjct: 509 EHIVVIDKLPRTASGKIQKFLLRKDIMRRLTQDV 542

Length = 547

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 61.5 bits (150), Expect = 4e-10
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 17/196 (8%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY+E  ++   +A+AL  +   KGD +A+  P T   +  +  + +AG V+V +     A
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 61  REIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            +IA  L  S+AK +F  Q+F         L  + L     K I+   I          +
Sbjct: 91  DDIAFILNHSEAKVLFVDQEF-------LSLAEEALALLSTKEIIDTEIIVISPAAEDSE 143

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVD--AVVNILFSSGTTGEPKAIPWTQLSSIRCTA 177
           +  ++D L+  D  P          P D    +++ ++SGTTG PK + +T   +     
Sbjct: 144 EGDYEDLLAGGDPDP------LPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNAL 197

Query: 178 EGWAHIDLKVGDVYCW 193
                  +    VY W
Sbjct: 198 GNVIEWGMPDRPVYLW 213

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 444
           GD+  R   GY    GR  D M + G    +  IER+  +  +   E A  +V     G 
Sbjct: 386 GDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPD-ATEVAVYAVPDPVVGD 444

Query: 445 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 504
           +V+   +VL  G    PD      +   Q  L P    S V+V  E PRTA+ K+L+R L
Sbjct: 445 QVMAA-LVLAPGAKFDPDAFAEFLAA--QPDLGPKQWPSYVRVCAELPRTATFKVLKRQL 501

Query: 505 RDQ 507
             +
Sbjct: 502 SAE 504

Length = 529

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 106/460 (23%), Positives = 154/460 (33%), Gaps = 101/460 (21%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y EL ++   +A  L  +    GD + + +P      I + A++  G   V    S  
Sbjct: 54  LSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHR 113

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A E+       +A  +        G    P   +++   P    V+  +  +   P   +
Sbjct: 114 ASELGAFASQIEAALLIVARQH-SGFDYRPFARELVAKHPTLRHVI--VAGEAEHPSVLE 170

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
                        HP   +          V     S GTTG PK IP T      S+R +
Sbjct: 171 AAL---------CHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRAS 221

Query: 177 AEGWAHIDLKVGDVY--CWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 234
           AE           VY    P    + +        FL G T+ L      E  F   ++ 
Sbjct: 222 AEICG---FDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCF-PLIER 277

Query: 235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 294
            GVTV   VP L                                 LWL +  W  A + S
Sbjct: 278 HGVTVTALVPPLAS-------------------------------LWLQAAEWERADLSS 306

Query: 295 -----CGGTELSSAYIQ------GSLLQPQAFGAFSTATMTAGLV-----------ILDE 332
                 GG  LS+   +      G  LQ Q FG      M  GLV           I+  
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQ-QVFG------MAEGLVNYTRLDDPPEIIIHT 359

Query: 333 CGVPY-PDDQPCVGEVGLFPLYLGASDRLL-----------NAD-HEEVYFRGMPMYKGM 379
            G P  PDD+  V +    P+  G    LL            A  H    F     Y   
Sbjct: 360 QGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFY--- 416

Query: 380 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 419
              R GD+++R   GY++V+GR  D +N GG K ++ E+E
Sbjct: 417 ---RSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVE 453

Length = 542

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 110/523 (21%), Positives = 175/523 (33%), Gaps = 107/523 (20%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           T+++L  +   +A AL       G  +A+    ++  V++  A +L G  +  +      
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
            E   +L     + + T            L  K   A  L  I              E  
Sbjct: 61  NERTNQLEDLDVQLLLTDS---------LLEEKDFQADSLDRIEAAG--------RYETS 103

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 180
           LS                       +D +  ++F+SGTTG+PKA+P T   +   +A G 
Sbjct: 104 LS-------------------ASFNMDQIATLMFTSGTTGKPKAVPHT-FRNHYASAVGS 143

Query: 181 AHIDLKVGDVYCWPTNLGW--VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD---A 235
              +L   +   W  +L    + G  ILF   + GATL +         F + ++     
Sbjct: 144 KE-NLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK------FNQLLEMIANE 196

Query: 236 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-AIIES 294
            VT +  VP+ +    +    EG     +R     G          +     Y   I  S
Sbjct: 197 RVTHISLVPTQLNRLLD----EGGHNENLRKILLGGSAIPAP---LIEEAQQYGLPIYLS 249

Query: 295 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP--------DDQPCVGE 346
            G TE  S                 T      L    + G P          D++   GE
Sbjct: 250 YGMTETCSQ---------------VTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGE 294

Query: 347 V-----GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 401
           +      L   YL   + L  A  ++ +F              GDI +    G++ V GR
Sbjct: 295 IMVKGANLMKGYLYQGE-LTPAFEQQGWFNT------------GDIGELDGEGFLYVLGR 341

Query: 402 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 461
            DD +  GG      EIE V  Q     ++ A +   P     +V V ++V      S  
Sbjct: 342 RDDLIISGGENIYPEEIETVLYQHPG--IQEAVVVPKPDAEWGQVPVAYIV----SESDI 395

Query: 462 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 504
            + K+I    +  KL         + + E P  AS K+LR  L
Sbjct: 396 SQAKLIAY--LTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)

Query: 400 GRADDTMNLGGIKTSSVEIERVCDQADESILE---TAAISVSPAGGGPEVLVIFVVLKKG 456
           GR  D + + G+   + EIE   +Q     +E   TAA +V  AG G + L +F V +  
Sbjct: 448 GREKDMIIINGVNYYNHEIEAAVEQVP--GVEPSFTAACAVRDAGSGTDELAVFFVPRYD 505

Query: 457 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP----EFPRTASNKLLRRVLRDQ 507
              +   L     +AI++ +     ++   V+P    +FP+T+  K+ R  LR +
Sbjct: 506 LDDRLAAL----LRAIRTHVARKIGIAPAYVIPLAKEDFPKTSLGKIQRAQLRKR 556

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 58.0 bits (141), Expect = 6e-09
 Identities = 46/180 (25%), Positives = 65/180 (36%), Gaps = 21/180 (11%)

Query: 2   TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY EL   V  VA AL D    KGD +A     +    +++LA   AG V V +      
Sbjct: 38  TYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTG 97

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
            E+A  L  S A+       +       P     L   P+  ++L  +     +  RE  
Sbjct: 98  EELAYILDHSGARAFLVDPALA------PTAEAALALLPVDTLILSLV-----LGGREAP 146

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK-------AIPWTQLSSI 173
             W DF               V    D +  IL++SGT   PK       A+    +S I
Sbjct: 147 GGWLDFAD--WAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCI 204

Length = 523

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 118/546 (21%), Positives = 193/546 (35%), Gaps = 113/546 (20%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA---D 56
           +TY EL EQ   +A  L  +    GD +A+ +    R  +  LA+  AG V   I     
Sbjct: 75  LTYAELDEQSNALARGLLALGVRAGDGVAV-LARNHRGFV--LALYAAGKVGARIILLNT 131

Query: 57  SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 116
            F+  ++A        K +   D           ++ +L A P     L A G +     
Sbjct: 132 GFSGPQLAEVAAREGVKALVYDD----------EFTDLLSALPPDLGRLRAWGGNP-DDD 180

Query: 117 REQDLSWKDFLSSVDYH-----PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS 171
                + +     +        P+P     +         ++ +SGTTG PK  P  + S
Sbjct: 181 EPSGSTDETLDDLIAGSSTAPLPKPPKPGGI---------VILTSGTTGTPKGAPRPEPS 231

Query: 172 SIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGATLALYQGSPLERS 227
            +   A   + +  + G+    P       GW    + +      G+T+       L R 
Sbjct: 232 PLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMAL----GSTVV------LRRR 281

Query: 228 FG-----KFVQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDL 280
           F      + +     T L  VP ++    +     L   D + ++    +G  S +  +L
Sbjct: 282 FDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSG--SALSPEL 339

Query: 281 WLSSKAWYNAIIESC-GGTELSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDE 332
              +   +  ++ +  G TE++ A I      P+     + A  T G       + ILDE
Sbjct: 340 ATRALEAFGPVLYNLYGSTEVAFATIAT----PE---DLAEAPGTVGRPPKGVTVKILDE 392

Query: 333 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFR-GMPMYKGMCLRRHGDIIKR- 390
            G   P      G VG                   ++   G P  +G    R   II   
Sbjct: 393 NGNEVP-----RGVVG------------------RIFVGNGFPF-EGYTDGRDKQIIDGL 428

Query: 391 ----TVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 441
                VG     G + V GR DD +  GG      E+E +     + ++E A I V    
Sbjct: 429 LSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPD-VVEAAVIGVDDEE 487

Query: 442 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSL-VKVVPEFPRTASNKLL 500
            G + L  FVV   G     D +K      ++  L   +KV   V  + E PR  + K+L
Sbjct: 488 FG-QRLRAFVVKAPGAALDEDAIK----DYVRDNLAR-YKVPRDVVFLDELPRNPTGKVL 541

Query: 501 RRVLRD 506
           +R LR+
Sbjct: 542 KRELRE 547

Length = 549

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 125/563 (22%), Positives = 210/563 (37%), Gaps = 125/563 (22%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY+EL   V  VA  L  +   +GD ++  +P      ++YLA    G V+  +   F 
Sbjct: 56  FTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFR 115

Query: 60  AREIATRLRVSKAKG-IFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 118
            RE++  L+ +++K  +  + F     R F   +      P     LPA+ + V +   +
Sbjct: 116 ERELSFMLKHAESKVLVVPKTF-----RGFDHAAMARRLRPE----LPALRHVVVVG-GD 165

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNP---VDAVVNILFSSGTTGEPKAIPWTQ---LSS 172
              S++  L +  +   P+  + +       D V  ++++SGTTGEPK +  T    +++
Sbjct: 166 GADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMAN 225

Query: 173 IRCTAEGWAHIDLKVGDVYCWPTNLGWVMG-------PVILFSSFLNGATLALYQGSPLE 225
           I   AE    + L   DV    + +    G       PV+L      GAT A+ Q     
Sbjct: 226 IVPYAE---RLGLGADDVILMASPMAHQTGFMYGLMMPVML------GAT-AVLQDIWDP 275

Query: 226 RSFGKFVQDAGVT-VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 284
               + ++  GVT  + + P L    R      G   + +R+F                 
Sbjct: 276 ARAAELIRTEGVTFTMASTPFLTDLTRAVK-ESGRPVSSLRTFL---------------- 318

Query: 285 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA------GLVIL-------- 330
                     C G     A I G+L++ +A  A     ++A      G V L        
Sbjct: 319 ----------CAG-----APIPGALVE-RARAALGAKIVSAWGMTENGAVTLTKLDDPDE 362

Query: 331 -----DECGVPY-------PDDQPC-VGEVG--------LFPLYLGASDRLLNADHEEVY 369
                D C +P         D  P   G++G         F  YL      LN    + +
Sbjct: 363 RASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQ--LNGTDADGW 420

Query: 370 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 429
           F              GD+ +    GYI + GR+ D +  GG     VEIE +  +     
Sbjct: 421 FDT------------GDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPA-- 466

Query: 430 LETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVV 488
           +   AI   P     E    FVV + G +    + ++ + ++ +  +  P   V    V 
Sbjct: 467 IAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLV----VR 522

Query: 489 PEFPRTASNKLLRRVLRDQIKHE 511
              PRT S K+ +  LR+ ++ E
Sbjct: 523 DALPRTPSGKIQKFRLREMLRGE 545

Length = 547

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 11/122 (9%)

Query: 383 RHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPA 440
           + GD+      GY  + GR  DD +  GG K S++EIE         + E A I V  P 
Sbjct: 317 KTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALL-EHPGVAEVAVIGVPDPD 375

Query: 441 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKL 499
            G  E +V  VV + G      +L+       + KL P +K+   V VV E PR A  K+
Sbjct: 376 WG--EAVVAVVVPEAGAALTLAELR----AWAREKLAP-YKIPKRVIVVDELPRNAMGKV 428

Query: 500 LR 501
            +
Sbjct: 429 QK 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 119/518 (22%), Positives = 181/518 (34%), Gaps = 65/518 (12%)

Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY ELR +V  VA  L          +A+  P +V AVI  LA+   G V   +     
Sbjct: 29  LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
             EIA              + I RG     + + V+      A V+ AI    G  +R  
Sbjct: 89  PAEIA--------------ELIKRG----EMTAAVIAVD---AQVMDAI-FQSGSGVRVL 126

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA--IPWTQLSS---IR 174
            L     L        P    P   P      + ++SGTTG PK   IP     S     
Sbjct: 127 ALGDLVGL-GEPESAGPPIEDPPREPEQPAF-VFYTSGTTGLPKGAVIPQRAAESRVLFM 184

Query: 175 CTAEGWAHIDLKVGDVYCWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFV 232
            T  G  H      +V      L  V+G   V++ +  L+G  + + +  P +    K +
Sbjct: 185 STQAGLRHGR---HNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADAL--KLI 239

Query: 233 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 292
           +   VT L   P+ + A         L    +      G T   D  L   ++      +
Sbjct: 240 EQERVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATMP-DAVLERVNQHLPGEKV 298

Query: 293 ESCGGTE-LSSAYI----QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV 347
              G TE ++S Y+     G+ ++P   G FS   +       DE      + +  V   
Sbjct: 299 NIYGTTEAMNSLYMRDPRTGTEMRP---GFFSEVRIVRIGGSPDEALPNGEEGELVVAAA 355

Query: 348 -GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM 406
              F  YL        A  E++            +   G +          + GR DD +
Sbjct: 356 DATFTGYLNQPQ----ATAEKLQDGWYRTSDVAVVDPSGTVR---------ILGRVDDMI 402

Query: 407 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 466
             GG      E+ERV  +A   + E   I +     G + +   VV ++G T   D L  
Sbjct: 403 ISGGENIHPSEVERVLGRA-PGVTEVVVIGLPDERWG-QSVTACVVPREGETLSADALDT 460

Query: 467 IFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 504
                  S+L    +      + E P+ A NK+LRR L
Sbjct: 461 F---CRASELADFKRPRRYFFLDELPKNAMNKVLRRQL 495

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 54.6 bits (132), Expect = 8e-08
 Identities = 131/556 (23%), Positives = 198/556 (35%), Gaps = 100/556 (17%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY EL   V   AN L ++    GD +A  +P              AG +   I     
Sbjct: 59  WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLE 117

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP-LKAIVLPAIGNDVGIP 115
             +IA  LR + AK + T    L       ++ KV   L A P L+ +V   +   +  P
Sbjct: 118 PEQIAELLRAAGAKVLVT----LGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGP 173

Query: 116 LREQDLSWK--------DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPW 167
            R      +        DF + +   P    +S      D V     + GTTG PK    
Sbjct: 174 KRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQH 233

Query: 168 TQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLAL----- 218
           T  + +   A  W     + L  GD       L  V    V   +    GA + L     
Sbjct: 234 THGNEV---ANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQG 290

Query: 219 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET---SN 275
           Y+G  +  +F K V+   +  L  VP++  A       +G D + +R +A  G       
Sbjct: 291 YRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLR-YALCGAAPLPVE 348

Query: 276 VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA----FSTATMTAGLVILD 331
           V      ++      I+E  G TE +           +  G+         +    VILD
Sbjct: 349 VFRRFEAATGV---RIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRV--VILD 403

Query: 332 ECGVPYPDDQPCVGEVGL--------FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRR 383
           + G  Y  D   V EVG+        F  Y       L A H           KG+ L  
Sbjct: 404 DAG-RYLRDCA-VDEVGVLCIAGPNVFSGY-------LEAAHN----------KGLWLED 444

Query: 384 H----GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 439
                GD+ +    GY  + GRA D +  GG       IE       E++L   A++++ 
Sbjct: 445 GWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIE-------EALLRHPAVALAA 497

Query: 440 AGGGP-----EVLVIFVVLKKGFTSQPDKLK-----MIFSKAIQSKLNPLFKVSLVKVVP 489
           A G P     E+ V +V LK G ++   +L       I  +A   K         V+++ 
Sbjct: 498 AVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPK--------HVRILD 549

Query: 490 EFPRTASNKLLRRVLR 505
             P+TA  K+ +  LR
Sbjct: 550 ALPKTAVGKIFKPALR 565

Length = 632

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 18/132 (13%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 444
           GD+      GYI V  R  D +  GG   +S E+E        ++ E A I +      P
Sbjct: 400 GDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYT-HPAVAEVAVIGL------P 452

Query: 445 -----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNK 498
                E +   VV K G T   D+L +   +A   +L   FKV   V  V E PR  S K
Sbjct: 453 DPKWIEAVTAVVVPKAGATVTEDEL-IAHCRA---RLAG-FKVPKRVIFVDELPRNPSGK 507

Query: 499 LLRRVLRDQIKH 510
           +L+R LR++   
Sbjct: 508 ILKRELRERYAG 519

Length = 523

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 26/183 (14%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY EL E     A  L       GD +A+ +P   +  I++  I+  G V V ++  F  
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI-------VLPAIGNDVG 113
            E++  L  + A+ +   D +       P+  +V     L+ +       VLPA      
Sbjct: 120 HELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEPT--- 170

Query: 114 IPL-------REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIP 166
           +PL       R       D L ++     P    P    +DA+  + ++ GTTG PK   
Sbjct: 171 LPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPA--LDALAALNYTGGTTGMPKGCE 228

Query: 167 WTQ 169
            TQ
Sbjct: 229 HTQ 231

Length = 567

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 77/324 (23%), Positives = 104/324 (32%), Gaps = 106/324 (32%)

Query: 145 PVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-------- 193
             D V     S G+TG PK IP T      S+R + E             CW        
Sbjct: 180 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE------------ICWLTQQTRYL 227

Query: 194 ---PTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 250
              P    + +        F  G  + L         F   ++   VTV   VP  V   
Sbjct: 228 CALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCF-PLIERHKVTVTALVPPAVA-- 284

Query: 251 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYI 305
                                        LW+ + +   A + S      GG + S+A  
Sbjct: 285 -----------------------------LWMQAASKSRADLSSLKLLQVGGAKFSAAAA 315

Query: 306 Q------GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEV 347
           +      G  LQ Q FG      M  GLV           I    G P  PDD+  V + 
Sbjct: 316 RRVPAVFGCQLQ-QVFG------MAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDD 368

Query: 348 GLFPLYLGASDRLL------------NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 395
              P+  G +  LL              +H    F     Y        GD+++ T  GY
Sbjct: 369 HGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFY------YTGDLVRLTPEGY 422

Query: 396 IIVQGRADDTMNLGGIKTSSVEIE 419
           I+V GRA D +N GG K ++ EIE
Sbjct: 423 IVVVGRAKDQINRGGEKIAAEEIE 446

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 115/549 (20%), Positives = 186/549 (33%), Gaps = 114/549 (20%)

Query: 1    MTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            +TY EL  +   +A+ L  +    +  + I +  ++  V+  LAI+ AG   V +   + 
Sbjct: 1600 LTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYP 1659

Query: 60   AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
               +A  +  S  + + TQ  +     + PL         L+++VL            +Q
Sbjct: 1660 RERLAYMIEDSGIELLLTQSHLQA---RLPL------PDGLRSLVL------------DQ 1698

Query: 120  DLSWKDFLSSVDYHPRPNYYSPVYNP-VDAVVNILFSSGTTGEPKA-----------IPW 167
            +  W      ++ +   N   P  N     +  ++++SG+TG PK            +  
Sbjct: 1699 EDDW------LEGYSDSN---PAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCA 1749

Query: 168  TQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS 227
            TQ +     A+          DV  W            LF   +NGA L +       R 
Sbjct: 1750 TQEAYQLSAADVVLQFTSFAFDVSVWE-----------LFWPLINGARLVIAPPG-AHRD 1797

Query: 228  FGKFVQ---DAGVTVLGTVPSLVKAW-----RNTNCLEGLDWTKIRSFASTGETSNVDD- 278
              + +Q      VT L  VPS+++       +  +         +R     GE   V+  
Sbjct: 1798 PEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHP------LSLRRVVCGGEALEVEAL 1851

Query: 279  DLWLSSKAWYNAIIESCGGTE--LSSAYIQGSLLQPQAFGAFSTATMTA--GLVILDECG 334
              WL        +    G TE  +   +        +   +       A     ILD   
Sbjct: 1852 RPWLERLPD-TGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASL 1910

Query: 335  VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEV-----YFRGMPMYK-GMCLRRHGDII 388
             P P      GE     LYLG    L              F   P    G  L R GD+ 
Sbjct: 1911 NPVP--IGVAGE-----LYLGG-VGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLA 1962

Query: 389  KRTVGGYIIVQGRADDTMNLGGIKTSSVEIE-RVCDQADESILETAAISVSPAGGGPEVL 447
            +    G I   GR D  + + G +    EIE R+ +Q    + E   I+   A G  + L
Sbjct: 1963 RYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGG--VREAVVIAQDGANG--KQL 2018

Query: 448  VIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEF------------PRTA 495
            V +VV        P    ++     Q  L  + K  L   +PE+            P T 
Sbjct: 2019 VAYVV--------PTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTP 2070

Query: 496  SNKLLRRVL 504
            + KL R+ L
Sbjct: 2071 NGKLDRKAL 2079

Length = 3956

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 129/577 (22%), Positives = 205/577 (35%), Gaps = 136/577 (23%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY EL +QV   A  L  +    GD +AI +P   + ++ + A++  G VVV     + 
Sbjct: 58  TTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT 117

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV-------LPAIGN-D 111
           A E+        A+     D      +  P   ++    PL+ IV       +P +    
Sbjct: 118 AHELEHPFEDHGARVAIVWD------KVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLA 171

Query: 112 VGIPL------REQ-------DLSWKDFLSS-------VDYHPRPNYYSPVYNPVDAVVN 151
           + +P+      R          + W+  + +          HPRP          D V  
Sbjct: 172 LRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPT--------PDDVAL 223

Query: 152 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG----WVMGPVILF 207
           IL++SGTTG+PK    T  +     A+G A           W   LG     V+  + +F
Sbjct: 224 ILYTSGTTGKPKGAQLTHRNLFANAAQGKA-----------WVPGLGDGPERVLAALPMF 272

Query: 208 SSF---LNGATLALYQGSPLERSFGKF----VQDA----GVTVLGTVPSLVKAWRNTNCL 256
            ++   L   TLA+  G  L           + DA      T L  VP L +        
Sbjct: 273 HAYGLTLCL-TLAVSIGGELVL-LPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEE 330

Query: 257 EGLDWTKIR---SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQ 313
            G+D + +R   S A     S V+  LW         ++E  G TE S          P 
Sbjct: 331 RGVDLSGVRNAFSGAMALPVSTVE--LWEKLTGGL--LVEGYGLTETS----------PI 376

Query: 314 AFGAFSTATMTAGLVILDECGVPYPD-------------DQPCVGEVG--------LFPL 352
             G   +     G V     GVP+PD               P  GE G        +F  
Sbjct: 377 IVGNPMSDDRRPGYV-----GVPFPDTEVRIVDPEDPDETMP-DGEEGELLVRGPQVFKG 430

Query: 353 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 412
           Y    +    +  +  +             R GD++     G+I +  R  + +  GG  
Sbjct: 431 YWNRPEETAKSFLDGWF-------------RTGDVVVMEEDGFIRIVDRIKELIITGGFN 477

Query: 413 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 472
               E+E V  +    + + A + + P   G E +V  VVL+ G    P+ L+    + +
Sbjct: 478 VYPAEVEEVLREHP-GVEDAAVVGL-PREDGSEEVVAAVVLEPGAALDPEGLRAYCREHL 535

Query: 473 QSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQI 508
                  +KV      V E PR    K+ RR +R+++
Sbjct: 536 TR-----YKVPRRFYHVDELPRDQLGKVRRREVREEL 567

Length = 573

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 52.7 bits (126), Expect = 5e-07
 Identities = 98/512 (19%), Positives = 163/512 (31%), Gaps = 64/512 (12%)

Query: 1    MTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            ++Y EL  +   +A+ L       D  + + +  ++  V+  LAI+ AG   V +   + 
Sbjct: 3083 LSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYP 3142

Query: 60   AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
               +A  L  S A+ + +Q  +     + PL   V                        Q
Sbjct: 3143 EERLAYMLEDSGAQLLLSQSHL-----RLPLAQGV------------------------Q 3173

Query: 120  DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
             L       +           P     + +  ++++SG+TG+PK +     +        
Sbjct: 3174 VLDLDRGDENYAEANPAIRTMP-----ENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWM 3228

Query: 180  WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239
                 L VGD     T   + +    LF   ++GA + L  G    R     V+      
Sbjct: 3229 QQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVL-AGPEDWRDPALLVELINSEG 3287

Query: 240  LGTVPSLVKAWRNTNCLEGL-DWTKIRSFASTGETSNVD-DDLWLSSKAWYNAIIESCGG 297
            +  + +     +     E     T ++     GE    D      +    YN      G 
Sbjct: 3288 VDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQQQVFAGLPLYNLY----GP 3343

Query: 298  TELSSAYIQGSLLQPQAFGAF-STATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLG- 355
            TE +        ++                  ILD    P P     VG +G   LYLG 
Sbjct: 3344 TEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPVP-----VGALG--ELYLGG 3396

Query: 356  ---ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 412
               A             F   P   G  L R GD+ +    G I   GR D  + + G +
Sbjct: 3397 EGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFR 3456

Query: 413  TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 472
                EIE         + E   ++V         LV +VV +       + LK     ++
Sbjct: 3457 IELGEIE-ARLLEHPWVREAVVLAVD-----GRQLVAYVVPEDEAGDLREALKAHLKASL 3510

Query: 473  QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 504
               + P   + L       P T + KL R+ L
Sbjct: 3511 PEYMVPAHLLFL----ERMPLTPNGKLDRKAL 3538

Length = 5163

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 51.8 bits (125), Expect = 5e-07
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 1  MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
          +T+ EL E+V  +A  L  +    GD +AI        VI  LAI+ AG V V I  + +
Sbjct: 6  ITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSS 65

Query: 60 AREIATRLRVSKAKGIFTQD 79
            E+A  L  S A+ +F +D
Sbjct: 66 PEEVAYILNDSGARVVFVED 85

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 68/283 (24%), Positives = 112/283 (39%), Gaps = 35/283 (12%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY  L E+V+ +A+ L  +  ++G+ +AI +   +  V       LAG V V I     
Sbjct: 26  LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFP-----LYSKVLGAAPLKAIVLPAIGNDVGI 114
           A ++A  L     + + T    L            L + ++   P  A            
Sbjct: 86  AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPA-- 143

Query: 115 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 174
                  SW   L+  D  P      PV +   A   IL++SG+TG PK +  +   ++ 
Sbjct: 144 -------SWPKLLALGDADPPH----PVIDSDMAA--ILYTSGSTGRPKGVVLSH-RNLV 189

Query: 175 CTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ 233
             A+  A  ++ +  D       L +  G   L ++F  GAT+ L+    L R   K ++
Sbjct: 190 AGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHD-YLLPRDVLKALE 248

Query: 234 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-----IRSFASTG 271
             G+T L  VP L   W     L  LDW +     +R   ++G
Sbjct: 249 KHGITGLAAVPPL---WAQ---LAQLDWPESAAPSLRYLTNSG 285

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 120/537 (22%), Positives = 196/537 (36%), Gaps = 83/537 (15%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            +Y+EL  +V  +A  L  +   +GD ++  +P       +YLA    G V+  +   F 
Sbjct: 54  FSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFR 113

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGI---- 114
            RE++  L  + +K +F    + RG     +  ++    P L+ +V+     D       
Sbjct: 114 ERELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVL 172

Query: 115 --PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--- 169
             P R+        L+     PRP   SP     D V  ++++SGTTGEPK +  T    
Sbjct: 173 MTPERDDTPDAAAILAG----PRP---SP-----DDVTQLIYTSGTTGEPKGVMHTANTL 220

Query: 170 LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFG 229
            S+I   AE    ++L  GDV    +       P+   + F+ G  + L           
Sbjct: 221 FSNIHPYAE---RLELGGGDVILMAS-------PMAHQTGFMYGLMMPL----------- 259

Query: 230 KFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR-SFASTGETSNVDDDLWLSSKAWY 288
                    +L     L   W      E +  T +  + AST   +++   +  S     
Sbjct: 260 ---------ILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVP 310

Query: 289 NAIIESCGGTELSSAYIQGS-----LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 343
           +     C G  +    ++ +      L   A+G      +T              D +P 
Sbjct: 311 SLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPL 370

Query: 344 VG-EVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH------------GDIIKR 390
            G EV +         +L   +   +  RG   + G   R H            GD+  +
Sbjct: 371 PGVEVKVID---ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQ 427

Query: 391 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 450
              GYI + GR+ D +  GG     VEIE +  Q     +   AI   P     E     
Sbjct: 428 DAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQ--HPAVAQVAIVAYPDERLGERACAV 485

Query: 451 VVLKKGFTSQPDKLKMI-FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
           VV K G T   D   M+ F KA +  L   +    ++VV   P T + K+ +  LR+
Sbjct: 486 VVPKPGCTL--DFAAMVAFLKAQKVALQ--YIPERLEVVDALPATPAGKIQKFRLRE 538

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 51/173 (29%), Positives = 70/173 (40%), Gaps = 26/173 (15%)

Query: 354 LGASDRLLNADH---EEVYFRGMPMYKG-----------MCLRRHG-----DIIKRTVGG 394
             A   LLNAD    E V   G   ++G           M   RHG     D+  R   G
Sbjct: 338 FDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM---RHGMYWSGDLAYRDADG 394

Query: 395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 454
           +I   GR  D M + G   S+  IER+      +I   A  +V     G +V+   +VL+
Sbjct: 395 WIYFAGRTADWMRVDGENLSAAPIERIL-LRHPAINRVAVYAVPDERVGDQVMAA-LVLR 452

Query: 455 KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 507
            G T  PD        A Q  L        V++  + P TA+NK+L+R L  Q
Sbjct: 453 DGATFDPDAFAAFL--AAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQ 503

Length = 540

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 442
           R GD+      G++ +  R  D +  GG   +S E+ERV  +  E + E A I V     
Sbjct: 376 RSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPE-VAEAAVIGVHDDRW 434

Query: 443 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLR 501
           G  +  + VVL  G T   + L     + + S     FKV   +KV  E PR  S K+L+
Sbjct: 435 GERITAV-VVLNPGATLTLEALDRHCRQRLAS-----FKVPRQLKVRDELPRNPSGKVLK 488

Query: 502 RVLRDQI 508
           RVLRD++
Sbjct: 489 RVLRDEL 495

Length = 497

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 65/289 (22%), Positives = 102/289 (35%), Gaps = 62/289 (21%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY ++      VA  L  +   +GD + + +P     V+ +L     G V  +    + 
Sbjct: 51  YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYT 110

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
             EIA + + S AK I TQ              K+ G A    + +  I +     L   
Sbjct: 111 PAEIAKQAKASGAKLIITQS---------CYVDKLKGLAEDDGVTVVTIDDPPEGCLHFS 161

Query: 120 DLSWKDF--LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 177
           +L+  D   L  V+  P            D VV + +SSGTTG PK +  T    +   A
Sbjct: 162 ELTQADENELPEVEISP------------DDVVALPYSSGTTGLPKGVMLTHKGLVTSVA 209

Query: 178 EGWAHID-------LKVGDV----------YCWPTNLGWVMGPVILFSSFLNGATLALYQ 220
           +    +D           DV          Y   +         +L      GA + +  
Sbjct: 210 Q---QVDGENPNLYFHSDDVILCVLPMFHIYSLNS---------VLLCGLRVGAAILIMP 257

Query: 221 ----GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 265
               G+ LE      +Q   VT+   VP +V A   +  +E  D + IR
Sbjct: 258 KFEIGALLE-----LIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIR 301

Length = 537

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 9/116 (7%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL E    +A  L +   +KG  +AI MP  ++  +   A++ AGYVVV++   + 
Sbjct: 49  ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108

Query: 60  AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 114
            RE+  +L+ S A+ I   ++F            +VL    +K +V+ ++G+ +G 
Sbjct: 109 PRELEHQLKDSGAEAIVVLENFA-------TTVQQVLAKTAVKHVVVASMGDLLGF 157

Length = 557

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 14/123 (11%)

Query: 393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAGGGPEVLVIFV 451
            G +++ GRA D + + G      +IERV +Q +   L   AA  V       E +VIFV
Sbjct: 381 NGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFV 440

Query: 452 VLKK---GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVLRD 506
             ++    FT          +  I+  +N    +++  V+P    P+T S K+ R  L  
Sbjct: 441 EYRQSLDDFTP--------LALKIKRHVNKKMGLNIDHVIPVRSIPKTTSGKIQRYKLAQ 492

Query: 507 QIK 509
           Q  
Sbjct: 493 QFL 495

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 115/518 (22%), Positives = 182/518 (35%), Gaps = 82/518 (15%)

Query: 24  GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 83
           GD +A+ M      V+  LA   A  VVV +  +    E   R + + A+ +   D    
Sbjct: 68  GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI-DADGP 126

Query: 84  GGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV- 142
             R  P         PL   V    G   G      D             P P   +P  
Sbjct: 127 HDRAEPTTR----WWPLTVNVGGDSGPSGGTLSVHLD---------AATEPTPATSTPEG 173

Query: 143 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD--VYCWPTNL 197
             P DA+  I+F+ GTTG PK +PWT     SS+R    G+    L   D  V   P   
Sbjct: 174 LRPDDAM--IMFTGGTTGLPKMVPWTHANIASSVRAIITGY---RLSPRDATVAVMPLYH 228

Query: 198 GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE 257
           G  +   +L +    GA L   +G     +F   ++  G T    VP++ +        E
Sbjct: 229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATE 288

Query: 258 GLDWTK-----IRSFAS--TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL 310
                      IRS ++  T ET+      + +       ++ + G TE   A  Q +  
Sbjct: 289 PSGRKPAALRFIRSCSAPLTAETAQALQTEFAA------PVVCAFGMTE---ATHQVTTT 339

Query: 311 QPQAFGAFSTATMTAGLVILD---ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNADHE 366
           Q +  G      ++ GLV      +  +   D  P   G VG                  
Sbjct: 340 QIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVG------------------ 381

Query: 367 EVYFRGMPMYKGMC-------------LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 413
           EV+ RG  + +G                 R GD+   +  G + ++GR  + +N GG K 
Sbjct: 382 EVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKI 441

Query: 414 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 473
           S   +E V      +++E A   V     G  V  + +V ++      ++L     +  +
Sbjct: 442 SPERVEGVLASHP-NVMEAAVFGVPDQLYGEAVAAV-IVPRESAPPTAEEL----VQFCR 495

Query: 474 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 511
            +L      +  +     P TA   L RR + +Q  H 
Sbjct: 496 ERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGHS 533

Length = 534

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 109/540 (20%), Positives = 194/540 (35%), Gaps = 104/540 (19%)

Query: 1   MTYKELREQVMLVANAL--DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 58
           MTYK+L E V  VA  L  +    KG+ IAI    ++  +++  AI     + V +    
Sbjct: 28  MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRL 87

Query: 59  AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 118
              E+  +L+ S    +F +            +  +  +    + V   I          
Sbjct: 88  TENELIFQLKDSGTTVLFVE----------KTFQNMALSMQKVSYVQRVI---------- 127

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 178
                   L  ++     N+         A   I ++SGTTG+PK    TQ +       
Sbjct: 128 ----SITSLKEIEDRKIDNFVEK---NESASFIICYTSGTTGKPKGAVLTQENMFWNALN 180

Query: 179 GWAHIDLKVGDVYCWPTNLGWVMGPVILFS--SFLNGATLALYQGSPLERSFGKFVQDAG 236
               IDL + D       L + +G + LF+  +   G  + + +     ++    ++   
Sbjct: 181 NTFAIDLTMHDRSIVLLPL-FHIGGIGLFAFPTLFAGGVIIVPRKFEPTKAL-SMIEKHK 238

Query: 237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 296
           VTV+  VP++ +A  N +  E  +   +R F + G                         
Sbjct: 239 VTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPE-------------------- 278

Query: 297 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG---LFPLY 353
             EL   +I    L  Q FG   T T     ++ +E      D +  VG +G   LF  Y
Sbjct: 279 --ELMREFIDRGFLFGQGFGM--TETSPTVFMLSEE------DARRKVGSIGKPVLFCDY 328

Query: 354 LGASDRLLNADHE--------EVYFRGMPMYKGMCLRRH-------------GDIIKRTV 392
                 L++ +          E+  RG  + K    R               GD+ +   
Sbjct: 329 -----ELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDE 383

Query: 393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 452
            G++ + GR  + +  GG     +E+E+V ++    + E A +       G E+ + F+V
Sbjct: 384 DGFVYIVGRKKEMIISGGENIYPLEVEQVINKLS-DVYEVAVVGRQHVKWG-EIPIAFIV 441

Query: 453 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK---VVPEFPRTASNKLLRRVLRDQIK 509
            K           +I    I+     L K  + K    + E P+ A+ K+ +  L +Q+K
Sbjct: 442 KKSSSV-------LIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLK 494

Length = 496

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 125/551 (22%), Positives = 211/551 (38%), Gaps = 110/551 (19%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILA----GYVVVSIAD 56
           T+ +L++     AN    +   KGD +     +T++    +   +LA    G + +    
Sbjct: 49  TFGDLKDYSNKAANFFKALGIGKGDTVM----LTLKRRYEFWFSMLALHKIGAIAIPATH 104

Query: 57  SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 116
              A++I  R+  +  K I     +  G    P +  +  AAP        +   VG P+
Sbjct: 105 MLTAKDIVYRIEAAGIKMI-----VCIGEDGVPEH--IDEAAPECGSPTLLV--LVGDPV 155

Query: 117 REQDLSWKDFLSSVD----YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
            E    W DF   ++       RP          D ++ + F+SGTTG PK +       
Sbjct: 156 PE---GWIDFDKEIENASPDFERPT--GNDATCNDDILLVYFTSGTTGMPKMVEHDHTYP 210

Query: 173 IR--CTAEGWAHIDLKVGDVYCWPTNLGW---VMGPVILFSSFLNGATLALYQGSPLERS 227
           +    TA+ W   ++K G ++    + GW   V G   L+  ++ GA + +Y        
Sbjct: 211 LGHIVTAKYWQ--NVKEGGLHLTVADTGWGKAVWGK--LYGQWIAGAAVFVY-------D 259

Query: 228 FGKFVQDA--------GVTVLGTVPS----LVKAWRNTNCLEGLDWTKIRSFASTGETSN 275
           + KF            GVT     P+    L+K       L   D + +R   + GE  N
Sbjct: 260 YDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIKE-----DLSKYDLSSLRYCTTAGEPLN 314

Query: 276 VDD-DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG 334
            +  + +         ++E  G TE +        ++P+  G+    +    + I+D   
Sbjct: 315 PEVFNTFKEKTGI--KLMEGFGQTETTLTIATFPWMEPKP-GSMGKPSPGYDIDIID--- 368

Query: 335 VPYPDDQPC-VGE-------------VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 380
              PD + C VGE             +GLF  Y    +R     H+  Y  G        
Sbjct: 369 ---PDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTG-------- 417

Query: 381 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SP 439
                D       GY+   GRADD +   G +    E+E    Q   ++LE A   V  P
Sbjct: 418 -----DTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQ-HPAVLECAVTGVPDP 471

Query: 440 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ---SKLNPLFKV-SLVKVVPEFPRTA 495
             G  +V+   +VL KG+    ++LK    K +Q    K+   +K   +++ V E P+T 
Sbjct: 472 IRG--QVVKATIVLTKGYEPS-EELK----KELQDHVKKVTAPYKYPRIIEFVDELPKTI 524

Query: 496 SNKLLRRVLRD 506
           S K+ R  +R+
Sbjct: 525 SGKIRRVEIRE 535

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 41/205 (20%)

Query: 2   TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +Y+EL E+   +A  L       KGD + + M  + + VI Y AI+ A  VVV +     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 60  AREIATRLRVSKAK-GIFTQDFILRGGRKFPLYSKVL---GAAPLK-AIV------LPAI 108
             E+A  +  S A+  I   +          L  KV    G   L+  IV      LPA 
Sbjct: 97  EEELAHYVTDSGARVAIVGSE----------LAPKVAPAVGNLRLRHVIVAQYSDYLPAE 146

Query: 109 GND-------VGIPLR----EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 157
                        PL+       ++WK+ L++    P P+   P     D +  + ++SG
Sbjct: 147 PEIAVPAWLRAEPPLQALAPGGVVAWKEALAA-GLAPPPHTAGP-----DDLAVLPYTSG 200

Query: 158 TTGEPKAIPWTQLSSIRCTAEGWAH 182
           TTG PK    T   ++   A G   
Sbjct: 201 TTGVPKGCMHTH-RTVMANAVGSVL 224

Length = 546

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 453
           GYI ++ R+ D +  GG   SS+E+E V  +   ++LE A ++      G E    FVVL
Sbjct: 415 GYIEIKDRSKDIIISGGENISSIEVEGVLYKHP-AVLEAAVVARPDEKWG-ETPCAFVVL 472

Query: 454 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
           K G +   ++L + + +    KL   FKV       E P+TA+ K+ + VLR+
Sbjct: 473 KPGASVTEEEL-IEYCRE---KL-AHFKVPKTVEFVELPKTATGKIQKFVLRE 520

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 35/190 (18%)

Query: 329 ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC-------- 380
           ++DE     PD +P  GE+            LL AD    +  G   Y GM         
Sbjct: 356 VVDEHDQELPDGEP--GEL------------LLRADEPFAFATG---YFGMPEKTVEAWR 398

Query: 381 -LRRH-GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 438
            L  H GD + R   G+     R  D +   G   SS E+E+V   +  ++   A   V 
Sbjct: 399 NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVL-LSHPAVAAAAVFPVP 457

Query: 439 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASN 497
              G  EV+   VVL+ G   +P  L     +  + +L   F V   V+ V   P+T + 
Sbjct: 458 SELGEDEVMAA-VVLRDGTALEPVAL----VRHCEPRL-AYFAVPRYVEFVAALPKTENG 511

Query: 498 KLLRRVLRDQ 507
           K+ + VLR+Q
Sbjct: 512 KVQKFVLREQ 521

Length = 542

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 119/520 (22%), Positives = 200/520 (38%), Gaps = 72/520 (13%)

Query: 1    MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            + Y EL  +   +A+AL          + + M  ++  V+  LAI+ AG   V +   + 
Sbjct: 537  LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYP 596

Query: 60   AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            A  +A  L  S  + + +Q  +   GRK PL      AA ++ + L              
Sbjct: 597  AERLAYMLEDSGVQLLLSQSHL---GRKLPL------AAGVQVLDLDRPA---------- 637

Query: 120  DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTA 177
              +W +  S  +     N  +  Y        ++++SG+TG+PK        LS+  C  
Sbjct: 638  --AWLEGYSEENPGTELNPENLAY--------VIYTSGSTGKPKGAGNRHRALSNRLC-- 685

Query: 178  EGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ-- 233
              W      L VGD     T   + +     F   ++GA L +       R   K V+  
Sbjct: 686  --WMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVV-AAPGDHRDPAKLVELI 742

Query: 234  -DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 292
               GV  L  VPS+++A+     +     T +R    +GE    D    + +K     + 
Sbjct: 743  NREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLY 800

Query: 293  ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL--VILDECGVPYPDDQPCVGEV--- 347
               G TE +      + ++ +   +       A L   ILD    P P     +GE+   
Sbjct: 801  NLYGPTEAAIDVTHWTCVE-EGGDSVPIGRPIANLACYILDANLEPVP--VGVLGELYLA 857

Query: 348  --GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT 405
              GL   Y G     L A+     F   P   G  + R GD+ +    G I   GR D  
Sbjct: 858  GRGLARGYHGRPG--LTAER----FVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQ 911

Query: 406  MNLGGIKTSSVEIE-RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL 464
            + L G++    EIE R+ +     + E A ++V       + LV +VVL+       + L
Sbjct: 912  VKLRGLRIELGEIEARLLEH--PWVREAAVLAV-----DGKQLVGYVVLESEGGDWREAL 964

Query: 465  KMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 504
            K   + ++   + P   ++L ++    P T + KL R+ L
Sbjct: 965  KAHLAASLPEYMVPAQWLALERL----PLTPNGKLDRKAL 1000

Length = 5163

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 91/385 (23%), Positives = 133/385 (34%), Gaps = 48/385 (12%)

Query: 146 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV-Y-CWPT--NLGWVM 201
           VD    I ++SGTTG PKA   +    +R  A       LK  DV Y C P   +    +
Sbjct: 81  VDPAFYI-YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTV 139

Query: 202 GPVILFSSFLNGATLALYQGSPLERSFG--KF---VQDAGVTVLGTVPSLVKAWRNTNCL 256
           G     S+   GA+LAL       R F   +F   V+  G T    V  L +   N    
Sbjct: 140 GWS---SALAAGASLAL------RRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEK 190

Query: 257 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSLLQPQA 314
                  +R     G       D+W   K  +    I+E  G TE +  +I      P A
Sbjct: 191 PDDRDHPLRKIIGNGLR----PDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNK-PGA 245

Query: 315 FGAFSTATMTAGLVILDECGVPYPDDQPCV----GEVGLFPLYLGASDRLL-------NA 363
            G    A +      ++        +  C+    GEVGL    LG             + 
Sbjct: 246 VGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGL---LLGEITDRNPFDGYTDDE 302

Query: 364 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 423
             E+   R +   KG      GD+++R   GY     R  DT    G   S+ E+E V  
Sbjct: 303 ATEKKILRDV-FKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLA 361

Query: 424 QADESILETAAISVS-PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 482
           +    + E     V  P   G   +   + L  G    P        + + +   PLF  
Sbjct: 362 KH-PGVEEANVYGVEVPGTEGRAGMAA-LTLAPGAAFDPQAFAAHLDEQLPAYARPLF-- 417

Query: 483 SLVKVVPEFPRTASNKLLRRVLRDQ 507
             ++V      T + K  +  LR +
Sbjct: 418 --LRVQAAMETTGTFKYQKTDLRKE 440

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 88/387 (22%), Positives = 151/387 (39%), Gaps = 71/387 (18%)

Query: 147 DAVVNILFSSGTTGEPK--AIP---------WTQLSSIRCTAEGWAHI--------DLKV 187
           D +  ++++SG+TG PK  AI          W        +AE  A +        DL V
Sbjct: 105 DDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAV---FSAEELAGVLAATSICFDLSV 161

Query: 188 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLV 247
            +++  P + G   G V+L  + L  A   L   +  E           VT++ TVPS  
Sbjct: 162 FEIFV-PLSTG---GRVVLADNAL--ALPDLP--AKAE-----------VTLINTVPSAA 202

Query: 248 KAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG 307
           +     + L     + +R+    GE    +    L +      +    G +E  + Y   
Sbjct: 203 RELLRHDALP----SSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSE-DTTYSTY 257

Query: 308 SLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLN 362
           + ++P A    S     AG    +LD    P P   P    +G  G+   YLG  +  L 
Sbjct: 258 AEVEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPE--LT 315

Query: 363 AD----HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 418
           A+    +      G  +Y      R GD+++R   G +   GR DD + + G +    EI
Sbjct: 316 AERFLPNPFAGSPGERLY------RTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEI 369

Query: 419 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 478
           E    ++   + E   +++  A G  + LV ++V   G     + L+      + ++L P
Sbjct: 370 EA-ALRSIPGVAEAVVVAIGDAAGDRQ-LVAYIVADPGAAIDIEDLR----ARLATRL-P 422

Query: 479 LFKV-SLVKVVPEFPRTASNKLLRRVL 504
            + V S    +   P T + K+ R+ L
Sbjct: 423 AYMVPSRFVRLDALPLTPNGKIDRKAL 449

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 123/543 (22%), Positives = 194/543 (35%), Gaps = 104/543 (19%)

Query: 1   MTYKELREQVMLVANALDTMFSK-GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            +Y+E+REQV+ +AN L     K GD++A+ +P +V   +   AI+ AG   + +   + 
Sbjct: 484 FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYP 543

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
              +   L  ++   + T    L      P ++ V     L      A       PL+  
Sbjct: 544 DDRLKMMLEDARPSLLITTADQL------PRFADVPDLTSLCYNAPLAPQG--AAPLQL- 594

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK-------AIP----WT 168
                          +P+     Y        I+F+SG+TG PK       AI     W 
Sbjct: 595 --------------SQPH--HTAY--------IIFTSGSTGRPKGVMVGQTAIVNRLLWM 630

Query: 169 QLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY----QGSPL 224
           Q            H  L   DV    T   + +     F  F+ GA L +        PL
Sbjct: 631 Q-----------NHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPL 679

Query: 225 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI---RSFASTGETSNVD-DDL 280
                +F  + GVT    VPS++ A+  +   EG   +     + F S GE    D    
Sbjct: 680 A--MQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCS-GEALPADLCRE 736

Query: 281 WLSSKAWYNAIIESC-GGTELS---SAYIQGSLLQPQAFGAFSTATM-------TAGLVI 329
           W   +    A + +  G TE +   S Y        +   A   +++         GL I
Sbjct: 737 W---QQLTGAPLHNLYGPTEAAVDVSWYPAF----GEELAAVRGSSVPIGYPVWNTGLRI 789

Query: 330 LDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPMYKGMCLRRHG 385
           LD    P P      G  G   LYL     A   L   D     F   P   G  + R G
Sbjct: 790 LDARMRPVP-----PGVAG--DLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTG 842

Query: 386 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC----DQADESILETAAISVSPAG 441
           D+ +    G +   GR+DD + + G +    EI+R      D              +  G
Sbjct: 843 DVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATG 902

Query: 442 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLR 501
           G    LV ++V + G       L+      ++ +L P     ++  + + P +A+ KL R
Sbjct: 903 GDARQLVGYLVSQSGLPLDTSALQ----AQLRERLPPHMVPVVLLQLDQLPLSANGKLDR 958

Query: 502 RVL 504
           + L
Sbjct: 959 KAL 961

Length = 1296

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 2  TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
          T+ EL+E+    AN L D    +GD +A+ +P       + L  I  G V +        
Sbjct: 2  TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61

Query: 61 REIATRLRVSKAKGIFTQD 79
          ++I  RL  + A+ I T  
Sbjct: 62 KDIRYRLERAGARAIVTSA 80

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 114/529 (21%), Positives = 190/529 (35%), Gaps = 84/529 (15%)

Query: 1    MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            ++Y EL  +   +A+ L          +AI    +   V+  LA++ AG   V +  ++ 
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYP 2088

Query: 60   AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            A  +A  L  S A  + TQ               +L   PL A V         +PL ++
Sbjct: 2089 AERLAYMLEDSGAALLLTQ-------------RHLLERLPLPAGV-------ARLPL-DR 2127

Query: 120  DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTA 177
            D  W D+  +    P            + +  ++++SG+TG PK  A+    L +  C A
Sbjct: 2128 DAEWADYPDT---APAVQLAG------ENLAYVIYTSGSTGLPKGVAVSHGALVA-HCQA 2177

Query: 178  EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDA 235
             G  + +L   D      +  +       F   LNGA + +        E+ + + ++  
Sbjct: 2178 AGERY-ELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDE-MERH 2235

Query: 236  GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD-DLW---LSSKAWYNAI 291
            GVT+L   P  ++        +G     +R +   GE        L    L     +N  
Sbjct: 2236 GVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGY 2294

Query: 292  IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQPCV 344
                G TE   A +   L + +       A +  G         ILD             
Sbjct: 2295 ----GPTE---AVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLA--PGMA 2345

Query: 345  GEVGLFPLYLGAS-------DR-LLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGY 395
            GE     LYLG         +R  L A+     F   P    G  L R GD+ +    G 
Sbjct: 2346 GE-----LYLGGEGLARGYLNRPGLTAER----FVPDPFSASGERLYRTGDLARYRADGV 2396

Query: 396  IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 455
            +   GR D  + + G +    EIE    QA  ++ E   ++   A G  + LV +VV   
Sbjct: 2397 VEYLGRIDHQVKIRGFRIELGEIE-ARLQAHPAVREAVVVAQDGASG--KQLVAYVVPDD 2453

Query: 456  GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 504
                   +L+   +  + + + P   V L ++    P   + KL R+ L
Sbjct: 2454 AAEDLLAELRAWLAARLPAYMVPAHWVVLERL----PLNPNGKLDRKAL 2498

Length = 5163

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 60/269 (22%), Positives = 93/269 (34%), Gaps = 75/269 (27%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI-ADSF 58
           +TY EL  +   +A AL     + GD +A+ MP     ++  L I+LAG   V I  D  
Sbjct: 13  LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72

Query: 59  AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 118
           A R  A  L  + A+ + T                       +    P +          
Sbjct: 73  AER-RAAILARAGARAVLTDP------------------GLAQPEEAPDLLVVA------ 107

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRC 175
            D +                  P     D +  ++F+SG+TGEPK +  T    +++I  
Sbjct: 108 -DDAAAA---------ESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILD 157

Query: 176 TAEGWA-------------HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 222
               +              H DL V D++                S+   GA L L    
Sbjct: 158 VNRRFGVGPADRVLALSALHFDLSVYDIFG-------------ALSA---GAALVL--PD 199

Query: 223 PLER----SFGKFVQDAGVTVLGTVPSLV 247
              R     + + VQ  GVTV  +VP+L+
Sbjct: 200 EARRRDPDHWAELVQRHGVTVWNSVPALM 228

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 27/182 (14%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            T+++L + V  +A  L  +    GD + I  P     ++   A    G ++V+I  ++ 
Sbjct: 46  YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-----------------LKA 102
           A E+   L  S  + +   D      +    ++ +    P                 L+ 
Sbjct: 106 ASELEYALGQSGVRWVICAD----AFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG 161

Query: 103 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 162
           +V  A     G     +  +  + +S      R           D  +NI ++SGTTG P
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDR-----DDPINIQYTSGTTGFP 216

Query: 163 KA 164
           K 
Sbjct: 217 KG 218

Length = 558

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 453
           G++  + RADDT  +GG+     E+ER+  + + ++ E A ++V  + G    L  F+V 
Sbjct: 379 GWVTYRCRADDTEVIGGVNVDPREVERLIIEDE-AVAEAAVVAVRESTGA-STLQAFLVA 436

Query: 454 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVS-LVKVVPEFPRTASNKLLRRVLRDQ 507
             G T     ++ +    + ++L+  FKV     VV   PRT + KL+R  LR Q
Sbjct: 437 TSGATIDGSVMRDLHRGLL-NRLSA-FKVPHRFAVVDRLPRTPNGKLVRGALRKQ 489

Length = 705

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 22/185 (11%)

Query: 327 LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNAD---HEEVYFRGMPMYKGMC 380
           + +LDE   P P   P    +G  G+   YLG  +  L A+    +     G  +Y    
Sbjct: 269 VYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPE--LTAERFVPDPFDDPGGRLY---- 322

Query: 381 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 440
             R GD+++    G +   GRADD + + G +    EIE          +  A + V   
Sbjct: 323 --RTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPG--VADAVVVVREE 378

Query: 441 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKL 499
           G G + LV +VV K G     + L+     A+++ L P + V +    + E P T + K+
Sbjct: 379 GPGDQRLVAYVVPKAGAAPDAEALR----AALRATL-PAYMVPAAFVQLDELPLTPNGKV 433

Query: 500 LRRVL 504
            R+ L
Sbjct: 434 DRKAL 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 81/403 (20%), Positives = 126/403 (31%), Gaps = 101/403 (25%)

Query: 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD---VYCWPTNLGWVMGP 203
           D V  I ++SGTTG PK    T   ++  TA   A       D   +   P  L  V G 
Sbjct: 84  DDVAVIPYTSGTTGLPKGCMHTH-RTVLATAAASAAWSGLTPDSVLLAFLP--LFHVAG- 139

Query: 204 VILFSSFLNGATLALYQGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 256
                         +Y G+ L         +  + ++   VT    + ++V         
Sbjct: 140 ------MQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRF 193

Query: 257 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ-----GSLLQ 311
              D + ++                              GG  L  A  +       LL 
Sbjct: 194 ADYDLSSLKVVG--------------------------GGGAALPPAVAERLKALTGLLY 227

Query: 312 PQAFGAFSTA---TMTAGL-VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE- 366
            + +G   T                 G+P       V +          +   L    E 
Sbjct: 228 EEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVIDP--------ETGEELPPGEEG 279

Query: 367 EVYFRGMPMYKGM---------CLR--------RHGDIIKRTVGGYIIVQGRADDTMNLG 409
           E+  RG  ++KG                     R GD+      GY     R    +N+ 
Sbjct: 280 EIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVS 339

Query: 410 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK---KGFTSQPD---- 462
           G K    E+E +  Q   ++LE   I       G EV+  FVVLK   +G  ++ D    
Sbjct: 340 GYKVWPAEVEALLYQ-HPAVLEVCVIGRPDPRRG-EVVKAFVVLKPDYRGKVTEEDIIEW 397

Query: 463 -KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 504
            + +M   K             +++ V E P+TAS K+L R+L
Sbjct: 398 CRERMAAYKY----------PRIIEFVDELPKTASGKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 86/386 (22%), Positives = 133/386 (34%), Gaps = 80/386 (20%)

Query: 157 GTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLN 212
           GTTG PK    +  + +   A  W       L  GDV      L  V G ++   +    
Sbjct: 12  GTTGAPKLARHSHRNEV---ANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAPLAR 68

Query: 213 GATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 267
           GAT+ L     ++   +  +F K V+   VT+L  VP+++ A      L   D + +R +
Sbjct: 69  GATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVP-LGDADISSLR-Y 126

Query: 268 ASTGET---SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMT 324
           A TG       V       +      ++E  G TE +                 S     
Sbjct: 127 ALTGAAPLPVEVARRFEAVTGV---PVVEGYGMTEGTGV---------------SAINPR 168

Query: 325 AGLVILDECGVPYP--------------DDQPC-VGEVG--------LFPLYLGASDRLL 361
            G       G+  P                + C  GEVG        +FP YL  +    
Sbjct: 169 GGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAH--- 225

Query: 362 NADH--EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 419
           NA    E+ +               GD+ +    GY+ + GRA D +  GG       IE
Sbjct: 226 NAGARLEDGWLNT------------GDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIE 273

Query: 420 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 479
                   ++   AA+    A  G E+ V +V LK G T    +L       I  +    
Sbjct: 274 EAL-LRHPAVALAAAVGRPDAYAG-ELPVAYVQLKPGATVTEGELLAFVKARIPER--AA 329

Query: 480 FKVSLVKVVPEFPRTASNKLLRRVLR 505
              + + ++   P TA  K+ +  LR
Sbjct: 330 VPKA-IYIIDALPLTAVGKIFKPRLR 354

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG- 441
           R GD+      G  + Q R  D++ LGG   +  EIE     A E++   AA  V  A  
Sbjct: 409 RTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIE----HALEALPGVAAAQVVGATR 464

Query: 442 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTAS---N 497
            G  V V FV+   G +     L      A +  L   FKV + V+VV  FP T S    
Sbjct: 465 DGKTVPVAFVIPTDGASPDEAGLM----AACREALAG-FKVPARVQVVEAFPVTESANGA 519

Query: 498 KLLRRVLRDQ 507
           K+ +  LR+ 
Sbjct: 520 KIQKHRLREM 529

Length = 540

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 17/164 (10%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            T++EL ++V  +A AL       GD + I M      V   LA  + G + V +     
Sbjct: 43  TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
             EIA  +    A  + T+  +       P+ + V    PL + V+ A     G    + 
Sbjct: 103 PPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVA-----GGSSDDS 151

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 163
            L ++D L+           +PV  P D+   I+++SGTTG PK
Sbjct: 152 VLGYEDLLAEAGPAH-----APVDIPNDSPALIMYTSGTTGRPK 190

Length = 542

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 34/173 (19%)

Query: 1   MTYKELREQVMLVANALDTMF-----SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 55
           +TY EL  +    +N L          +GD +AI +        +Y A   +G     I 
Sbjct: 12  VTYGELEAR----SNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPIN 67

Query: 56  DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 115
               A EIA  +  S AK +                +++    P    +L  +   V   
Sbjct: 68  WHLTAAEIAYIVDDSGAKVLIVS------AALADTAAELAAELPAGVPLLLVVAGPVP-- 119

Query: 116 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV---NILFSSGTTGEPKAI 165
                  ++ +  ++   P          P+       ++L+SSGTTG PK I
Sbjct: 120 ------GFRSYEEALAAQPDT--------PIADETAGADMLYSSGTTGRPKGI 158

Length = 502

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 35/137 (25%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAG-- 441
           GD       GY   QGR DD      IKTS    ERV     ES L E  A  V+ AG  
Sbjct: 437 GDSAYMDEDGYFWFQGRVDDV-----IKTSG---ERVGPFEVESKLMEHPA--VAEAGVI 486

Query: 442 GGP-----EVLVIFVVLKKGFTSQP-DKLKMIFSKAIQSKLNPL-------FKVSLVKVV 488
           G P     E++  FV L+ G+  +P ++LK      ++  L          FK  L    
Sbjct: 487 GKPDPVRGEIIKAFVALRPGY--EPSEELKEEIRGFVKKGLGAHAAPREIEFKDKL---- 540

Query: 489 PEFPRTASNKLLRRVLR 505
              P+T S K++RRVL+
Sbjct: 541 ---PKTRSGKIMRRVLK 554

Length = 570

>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009)

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 485 VKVVPEFPRTASNKLLRRVLRDQIKHE 511
           V+ V E P+T S K+LRR+LR     E
Sbjct: 7   VEFVDELPKTRSGKILRRLLRAIALGE 33

This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 419
           GD++     GYI V GR  D +N GG K ++ EIE
Sbjct: 414 GDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIE 448

Length = 536

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 453
           G + V GR D+ +  GG     +E+E+      + + E A I V     G + L  FVVL
Sbjct: 430 GRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPD-VAEAAVIGVDDEQYG-QRLAAFVVL 487

Query: 454 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVSL-VKVVPEFPRTASNKLLRRVLRD 506
           K G ++ P+ LK      + +     +KV   + V+ E PR A+ K+LRR L+ 
Sbjct: 488 KPGASATPETLKQHVRDNLAN-----YKVPRDIVVLDELPRGATGKILRRELQA 536

Length = 537

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 64/267 (23%), Positives = 98/267 (36%), Gaps = 46/267 (17%)

Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVV--VSIADS 57
           +TY E +  V  +A AL D     G  + I    ++   ++ LA + AG     VS A S
Sbjct: 81  VTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS 140

Query: 58  FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA----IVLPAIG 109
             + + A +L+    + K + +F Q            +++ L A  L       V     
Sbjct: 141 LMSHDHA-KLKHLFDLVKPRVVFAQSG--------APFARALAALDLLDVTVVHVTGPGE 191

Query: 110 NDVGIPLREQDLSWKDFLSSVDY-HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 168
               I     DL+     ++V                 D V   LF+SG+TG PKA+  T
Sbjct: 192 GIASIAFA--DLAATPPTAAVAAAIAAITP--------DTVAKYLFTSGSTGMPKAVINT 241

Query: 169 Q--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPVILFSSFL-NGATLALYQ 220
           Q  + +     E               P +L W      MG    F+  L  G TL +  
Sbjct: 242 QRMMCANIAMQEQ-LRPREPDPPP---PVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDD 297

Query: 221 GSPLERSFGKFVQ---DAGVTVLGTVP 244
           G PL   F + ++   +   TV G VP
Sbjct: 298 GKPLPGMFEETIRNLREISPTVYGNVP 324

Length = 624

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 442
           R GDI      GY+ +  R  + +   G + +  ++E V     E I++ A  +V     
Sbjct: 433 RTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPE-IIDAAVTAVPDKEC 491

Query: 443 GPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLR 501
           G E+ V FVV ++G T SQ   +  +       ++ P  KV  V  V   P++ + K+LR
Sbjct: 492 G-EIPVAFVVRRQGSTLSQEAVINYV-----AKQVAPYKKVRKVVFVQSIPKSPAGKILR 545

Query: 502 RVLRDQIKHELSVRSRI 518
           R L+  +    SV SR+
Sbjct: 546 RELKRSLT--NSVSSRL 560

Length = 560

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 1   MTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 58
           ++Y EL+  V  +A  L  +    +GD + + +P +V   +I+LA++  G +V ++  S 
Sbjct: 67  ISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSS 126

Query: 59  AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 118
           +  EI  R+        FT           P   + L    +  I +P   +     +  
Sbjct: 127 SLGEIKKRVVDCSVGLAFTS----------PENVEKLSPLGVPVIGVPENYDFDSKRIEF 176

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 168
                       D+ P+P     +    D V  I++SSGTTG  K +  T
Sbjct: 177 PKFYEL-IKEDFDFVPKP----VIKQ--DDVAAIMYSSGTTGASKGVVLT 219

Length = 560

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 24/166 (14%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           T+ ++ +Q   +A AL ++    GD IAI        +I  LAI +AG+V V +  +  A
Sbjct: 8   TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV---LPAIGNDVGIPLR 117
             I   L  S AK +F                K+     +KA V   LP I       L+
Sbjct: 68  ETIRYVLEHSDAKALFV--------------GKLDDWDAMKAGVPEGLPTIILFPYSTLK 113

Query: 118 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 163
           +    W D L++      P    P+  P + +  I+++SGTTG+PK
Sbjct: 114 DHY-KWDDLLAA----TEPLQGRPLPEP-EDLATIVYTSGTTGQPK 153

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 444
           GD+ K    GY+ + GR  D +  GG      E+E   D+    ++E+A I V     G 
Sbjct: 382 GDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPG-VVESAVIGVPHPDFG- 439

Query: 445 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRV 503
           E +   VV K G  +  D+  ++   A++ +L   FK    V  V E PR    K+ + +
Sbjct: 440 EGVTAVVVPKPG--AALDEAAIL--AALKGRLAR-FKQPKRVFFVDELPRNTMGKVQKNL 494

Query: 504 LRDQIK 509
           LR+Q  
Sbjct: 495 LREQYA 500

Length = 504

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 453
           G++ V  R  D +  GG      EIE V   +   + E   + V     G +V V FVV 
Sbjct: 374 GFLYVLDRRSDLIISGGENIYPAEIEEVL-LSHPGVAEAGVVGVPDDKWG-QVPVAFVVK 431

Query: 454 KKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIK 509
               T   ++L+    + +       +KV      V E PR AS KLLR  L+  ++
Sbjct: 432 SGEVTE--EELRHFCEEKLAK-----YKVPKRFYFVEELPRNASGKLLRHELKQLVE 481

Length = 483

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 10/123 (8%)

Query: 394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS-PAGGGPEVLVIFVV 452
           G++ ++ R+ D +  GG   SSVE+E V  +  + +LETA +++  P  G  E    FVV
Sbjct: 434 GHVEIKDRSKDIIISGGENISSVEVENVLYKYPK-VLETAVVAMPHPTWG--ETPCAFVV 490

Query: 453 LKKGFTSQPDKLKMIFS------KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
           L+KG T++ D++  + +      +  +  L        V  + E P+  + K+L+  LRD
Sbjct: 491 LEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRD 550

Query: 507 QIK 509
             K
Sbjct: 551 IAK 553

Length = 579

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 442
           + GDI      GY+ +  R  D + + G      E+E V   A   +L+ AAI V     
Sbjct: 436 KTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVL-AALPGVLQCAAIGVPDEKS 494

Query: 443 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLR 501
           G E + +FVV+K G T   +++ M   +A  +     +KV   V+   E P T   K+LR
Sbjct: 495 G-EAIKVFVVVKPGETLTKEQV-MEHMRANLTG----YKVPKAVEFRDELPTTNVGKILR 548

Query: 502 RVLRDQ 507
           R LRD+
Sbjct: 549 RELRDE 554

Length = 562

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 2  TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
          TY EL  +   +A AL       GD +A+  P +   V++YLAI  AG V V +  S+ A
Sbjct: 13 TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72

Query: 61 REIA 64
           E+A
Sbjct: 73 AELA 76

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 31/184 (16%)

Query: 1   MTYKELREQVMLVANALDTMFSK--GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 58
           ++Y ++R+ V+    AL T  SK     I I MP +  A I Y A +L+G + V I  S 
Sbjct: 46  LSYNQVRKAVI----ALATKVSKYPDQHIGIMMPASAGAYIAYFATLLSGKIPVMINWSQ 101

Query: 59  AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIP 115
             RE+     +     + T   +++         +  G     P   I +  +       
Sbjct: 102 GLREVTACANLVGVTHVLTSKQLMQHLA------QTHGEDAEYPFSLIYMEEV------- 148

Query: 116 LREQDLSWKD-----FLSSVDYHPRPNYY-SPVYNPVDAVVNILFSSGTTGEPKAIPWTQ 169
              ++LS+ +        S+ +     ++     +P D  V ILF+SGT   PK +P T 
Sbjct: 149 --RKELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAV-ILFTSGTEKLPKGVPLTH 205

Query: 170 LSSI 173
            + +
Sbjct: 206 ANLL 209

Length = 539

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 126/533 (23%), Positives = 191/533 (35%), Gaps = 96/533 (18%)

Query: 1    MTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            + Y EL  Q   +A+ L       D  +AI    + + ++  LAI+ AG   V +   + 
Sbjct: 1157 LDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYP 1216

Query: 60   AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            A  +A  L  S  + + TQ             S +L         LP       I L   
Sbjct: 1217 AERLAYMLADSGVELLLTQ-------------SHLLER-------LPQAEGVSAIALDSL 1256

Query: 120  DL-SWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 178
             L SW      +  H             D +  ++++SG+TG+PK +  T        AE
Sbjct: 1257 HLDSWPSQAPGLHLHG------------DNLAYVIYTSGSTGQPKGVGNTH----AALAE 1300

Query: 179  --GW--AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE----RSFGK 230
               W  A   L   DV      + + +     F   + G  L L    P E    +   +
Sbjct: 1301 RLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVL--AGPGEHRDPQRIAE 1358

Query: 231  FVQDAGVTVLGTVPSLVKAW----RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 286
             VQ  GVT L  VP L++ +        C      T +R   S GE         L +  
Sbjct: 1359 LVQQYGVTTLHFVPPLLQLFIDEPLAAAC------TSLRRLFSGGEA--------LPA-E 1403

Query: 287  WYNAIIESCGGTELSSAY------IQGSLLQPQAF-GAFSTATMTAGLV---ILDECGVP 336
              N +++     +L + Y      I  +  Q QA  G  S      G V   +LD     
Sbjct: 1404 LRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNL 1463

Query: 337  YPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTV 392
             P       C+G  GL   YLG     L A+     F   P+   G  L R GD  +   
Sbjct: 1464 LPPGVAGELCIGGAGLARGYLGRPA--LTAER----FVPDPLGEDGARLYRTGDRARWNA 1517

Query: 393  GGYIIVQGRADDTMNLGGIKTSSVEIE-RVCDQADESILETAAISVSPAGGGPEVLVIFV 451
             G +   GR D  + L G +    EI+ R+  Q     +  AA+ V     G + LV + 
Sbjct: 1518 DGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPG---VAQAAVLVREGAAGAQ-LVGYY 1573

Query: 452  VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 504
              + G  ++ ++LK   +  +   + P   + L     + P   S KL RR L
Sbjct: 1574 TGEAGQEAEAERLKAALAAELPEYMVPAQLIRL----DQMPLGPSGKLDRRAL 1622

Length = 4334

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 2  TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
          TY EL E+V  +A  L  +    GD +A+ +      +  + A+   G V V I  +   
Sbjct: 5  TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 61 REIATRLRVSKAKGIFT 77
           E+A  L  S A+ I  
Sbjct: 65 EELAHILDHSGARLIVV 81

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 36/131 (27%), Positives = 48/131 (36%), Gaps = 25/131 (19%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS---VSPA- 440
           GD+      GY+ V GR DD +  GG      EIE V       +L+  A+    V    
Sbjct: 293 GDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAV-------LLQHPAVEEAAVVGVP 345

Query: 441 ----GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTA 495
               G   +  V FVV      +            +  KL   +K       +PE PR A
Sbjct: 346 DDEWG---QRPVAFVV-----PNDDPVSVEELQAFLADKLAK-YKRPKRWYPLPELPRNA 396

Query: 496 SNKLLRRVLRD 506
           S K+ R  LR 
Sbjct: 397 SGKIDRAALRQ 407

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 20/169 (11%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY E+       A AL ++   KG  + + +P      I+ L I+ AG V      +   
Sbjct: 57  TYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALE 116

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
            EI  +   + AK I T D           Y KV G   L  IVL            E  
Sbjct: 117 SEIKKQAEAAGAKLIVTNDT---------NYGKVKGLG-LPVIVLGEEKI-------EGA 159

Query: 121 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ 169
           ++WK+ L + D     +    +      +  + FSSGTTG  K +  T 
Sbjct: 160 VNWKELLEAADRAGDTSDNEEILQ--TDLCALPFSSGTTGISKGVMLTH 206

Length = 546

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 25/178 (14%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 57
           +TY E  E+V  +A AL     S    + I    ++   ++ LA + AG  Y  VS A S
Sbjct: 70  LTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYS 129

Query: 58  FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 113
             +++   +LR    +     +F  D           +++ L A     + + A+   V 
Sbjct: 130 LVSQDFG-KLRHVLELLTPGLVFADDG--------AAFARALAAVVPADVEVVAVRGAVP 180

Query: 114 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 169
                    +   L++    P        +  V  D +   LF+SG+TG PKA+  T 
Sbjct: 181 GR---AATPFAALLAT----PPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTH 231

Length = 614

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 444
           GD ++R   G++   GR D+ +   G + S  E+E V   A   + E  A  V     G 
Sbjct: 401 GDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVA-YATGLVAEAVAFGVPDPTLG- 458

Query: 445 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRV 503
           + +V+ V    G       L        +++L P + V +L+ V    PR A+ K+ R+ 
Sbjct: 459 QAIVLVVTPPGGEELDRAALL----AECRARL-PNYMVPALIHVRQALPRNANGKIDRKA 513

Query: 504 L 504
           L
Sbjct: 514 L 514

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 1  MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
          +TY EL E V  +A  L +    KGD +A+ M  + + VI Y AI+ AG VVV +     
Sbjct: 2  ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61

Query: 60 AREIATRLRVSKAKGIFTQD 79
            E+   L  S A+ +    
Sbjct: 62 EAELEHILNDSGARVLIVGS 81

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 33/198 (16%)

Query: 12  LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 71
           L A+ +    +K D +++  P T     ++ A+ +AG V+  I     A  IA  LR +K
Sbjct: 52  LAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAK 111

Query: 72  AKGIFTQDFILRGGRKF-PLYSKVLGAAPLKAIVLPAIGNDVGIP---LREQDLSWKDFL 127
            K +F         R F PL  +VL        +L +  +++ +P   + E D   +   
Sbjct: 112 PKILFVD-------RSFEPLAREVLH-------LLSSEDSNLNLPVIFIHEIDFPKRPSS 157

Query: 128 SSVDY-------HPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAE 178
             +DY        P P+  + ++   D    +++ ++SGTT +PK +  +   +   T  
Sbjct: 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS 217

Query: 179 ---GWAHIDLKVGDVYCW 193
              GW   ++    VY W
Sbjct: 218 AIIGW---EMGTCPVYLW 232

Length = 579

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 45/270 (16%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 57
           +TY E   QV  +A AL  +  S    + I    ++   ++ LA + AG     VS A S
Sbjct: 26  VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85

Query: 58  FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 113
             +++ A +LR    +     +F +D           +++ L A  L  + + A+    G
Sbjct: 86  LLSKDFA-KLRHIFDLLTPGAVFAEDG--------AAFARALAALGLAGVPVVAVRGAPG 136

Query: 114 IP--LREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 169
            P       L+           P        +  V  D V   LF+SG+TG PKA+  T 
Sbjct: 137 GPAIAFAALLA----------TPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTH 186

Query: 170 L---SSIRCTAEGWAHIDLKVGDVYCWPTNLGW--VMGPVILFSSFL-NGATLALYQGSP 223
               ++    A+ W  +  +   +  W   L W    G    F+  L NG TL +  G P
Sbjct: 187 RMLCANQAMIAQCWPFLTEEPPVLVDW---LPWNHTFGGNHNFNMVLYNGGTLYIDDGKP 243

Query: 224 LERSFGKFVQ---DAGVTVLGTVPSLVKAW 250
           +   F + ++   +   TV   VP   K +
Sbjct: 244 VPGLFEETLRNLREVSPTVYFNVP---KGF 270

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 17/167 (10%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           +Y EL E++   AN   ++   KGD +A+ +      +  +  +   G ++V I      
Sbjct: 39  SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL--GAAPLKAIVLPAIGNDVGIPLRE 118
            E A  L+ S+A  + T           P+Y ++    A PL+ I L  +          
Sbjct: 99  EESAWILQNSQASLLVTSAQFY------PMYRQIQQEDATPLRHICLTRVALP------- 145

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI 165
            D     F       P    Y+P  +  D    ILF+SGTT  PK +
Sbjct: 146 ADDGVSSFTQLKAQQPATLCYAPPLS-TDDTAEILFTSGTTSRPKGV 191

Length = 517

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 4/126 (3%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 444
           GD+  +   GYI ++ R+ D +  GG   SS+E+E V      ++LE A++   P     
Sbjct: 435 GDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVV-YTHPAVLE-ASVVARPDERWG 492

Query: 445 EVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRV 503
           E    FV LK G   S    L     K  + +L P + V    V    P+TA+ K+ + V
Sbjct: 493 ESPCAFVTLKPGVDKSDEAALAEDIMKFCRERL-PAYWVPKSVVFGPLPKTATGKIQKHV 551

Query: 504 LRDQIK 509
           LR + K
Sbjct: 552 LRAKAK 557

Length = 567

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 444
           GD+      GY+ +  R+ D +  GG   SS+++E +       + E A I V       
Sbjct: 415 GDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLA-VGHPKVAEAAVIGVYHPKWDE 473

Query: 445 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 504
             L+I V LK G T+  ++      K +  K+   +    V  V   P TA+ K+L+  L
Sbjct: 474 RPLLI-VQLKPGETATREE----ILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTAL 528

Query: 505 RDQIK 509
           R+Q K
Sbjct: 529 REQFK 533

Length = 542

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 2  TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
          +Y+EL+E     AN L ++   KG+ +   +P +    +  L  +  G V   +  +F  
Sbjct: 2  SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 61 REIATRLRVSKAKGIFTQDFILR 83
            I  RL + +AK + T   +  
Sbjct: 62 EPIRDRLELGEAKVLITTPELYE 84

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 65/301 (21%), Positives = 106/301 (35%), Gaps = 65/301 (21%)

Query: 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVY-CW-PTNLGWVMGP 203
           D +  ++++SGTTG PK +  T   ++   A      I L  GD    + P  L  V   
Sbjct: 88  DDLATLIYTSGTTGNPKGVMLTH-RNLLAQAAALLEVIPLSPGDRVLSFLP--LAHVFEQ 144

Query: 204 VI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 262
            +  +    +GA +  +  SP   +  + +++   TV   VP +              W 
Sbjct: 145 RLGEYLPLSSGARVN-FAESP--ETLLEDLREVRPTVFFAVPRV--------------WE 187

Query: 263 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT 322
           KI +       + V     L  K +  A+    GG  L  A   G+ L P+    F    
Sbjct: 188 KIYAGIE----AKVAAAGPLKRKLFRWAL----GGGRLRFAVSGGAPLPPEVLEFFR--- 236

Query: 323 MTAGLVILD-----ECGVPY---PDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 374
              G+ IL+     E              +G VG      G   R+  A+  E+  RG  
Sbjct: 237 -ALGIPILEGYGLTETSGVATVNRPGDIRIGTVG--KPLPGVEVRI--AEDGEILVRGPN 291

Query: 375 MYKGMCLR---------------RHGDIIKRTVGGYIIVQGRADDTM-NLGGIKTSSVEI 418
           + KG   +                 GDI +    G++++  R  D +   GG   +   I
Sbjct: 292 VMKGY-YKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPI 350

Query: 419 E 419
           E
Sbjct: 351 E 351

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            ++ EL ++    A  L  +    GD +A+ M           A +  G   V +   F 
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRK-FPLYSKVLGAAPLKAIVLPAIG-NDVGIPLR 117
             EIA  L  S A+ +     +L G     P    VL + P    +  A   +   +   
Sbjct: 72  PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130

Query: 118 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI 165
              + W+ +L+      +  Y  P   PV    +++++SGTTG PK +
Sbjct: 131 AGAIDWEGWLAQ-----QEPYDGP---PVPQPQSMIYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 13/105 (12%)

Query: 146 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGW----- 199
           +D    I+F+SG+TG+PKA+  T   +   +A G A ++ L   D   W   L       
Sbjct: 76  LDRPATIIFTSGSTGKPKAVVHT-WGNHLASARGSAENLGLTPDD--NW---LLSLPLFH 129

Query: 200 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVP 244
           V G  I+  S L G  L L      E    + +++ GVT +  VP
Sbjct: 130 VSGLAIVMRSLLAGGALVLPDKFDAEAI-AEALENHGVTHISLVP 173

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	518
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.98
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.97
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.89
PRK09188	365	serine/threonine protein kinase; Provisional	99.87
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.77
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.63
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.29
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.98
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.76
PLN02249	597	indole-3-acetic acid-amido synthetase	98.1
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	98.01
PLN02247	606	indole-3-acetic acid-amido synthetase	97.88
PLN02620	612	indole-3-acetic acid-amido synthetase	97.8
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	93.29

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=5.6e-79  Score=604.35  Aligned_cols=484  Identities=27%  Similarity=0.304  Sum_probs=412.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc---cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEe
Q 010114            1 MTYKELREQVMLVANALDTM---FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT   77 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~---v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~   77 (518)
                      +||+|+.+++.++|.+|.+.   +++||+|++++||++++..+++||...|++..++||.+.+.++.+.++.++++++|+
T Consensus        46 ~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~  125 (537)
T KOG1176|consen   46 LTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFV  125 (537)
T ss_pred             EcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEE
Confidence            69999999999999999976   788999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccc-hhhhhccCCCCCCCCCCCCCCCCCCCEEEEEecc
Q 010114           78 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLS-WKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS  156 (518)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  156 (518)
                      +....      ++...+........+++................. +..+......    ..  ......+|+++++|||
T Consensus       126 d~~~~------~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~dd~~~il~SS  193 (537)
T KOG1176|consen  126 DEDFY------DKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP----DG--IRPVSEDDTAAILYSS  193 (537)
T ss_pred             cCchH------HHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCC----cc--cccCCCCCeEEEecCC
Confidence            98543      3443444333333333332211111111111122 3333322221    11  4455679999999999


Q ss_pred             CCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114          157 GTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAG  236 (518)
Q Consensus       157 GtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  236 (518)
                      ||||.||||++||++++.+.........+...|+.++.+|++|.+|+..++.++..|++.++....+++..+++.+++|+
T Consensus       194 GTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kyk  273 (537)
T KOG1176|consen  194 GTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYK  273 (537)
T ss_pred             CCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhC
Confidence            99999999999999999987766666677889999999999999999997776666777667676789999999999999


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccC
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG  316 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~  316 (518)
                      +|+++++|.++..|++.+.....+++++|.+.+||.++++++.+.+.++++...+.++||+||+++..+.+........+
T Consensus       274 vt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~  353 (537)
T KOG1176|consen  274 VTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPG  353 (537)
T ss_pred             EEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCccc
Confidence            99999999999999999877889999999999999999999999999999878899999999999877777766656889


Q ss_pred             CCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCce
Q 010114          317 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY  395 (518)
Q Consensus       317 ~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  395 (518)
                      ++|.++++.++.+.+++|+.++.++  .||||+ ++..+.+|  +.|++.+...+      +.+|||+|||+|++|+||+
T Consensus       354 svG~~~~g~~~~v~~e~g~~l~~~~--~GEI~vrg~~imkGY--~~NpeaT~~~~------~~~GW~~TGDiGy~D~DG~  423 (537)
T KOG1176|consen  354 SVGRLLPGVRVKVLDETGVSLGPNQ--TGEICVRGPQVMKGY--LKNPEATKEAF------DDDGWFHTGDLGYFDEDGY  423 (537)
T ss_pred             ccCccccceEEEeeCCCCCCCCCCC--ceEEEEECcccchhh--cCChHHHHhhc------ccCCccccCceEEEcCCCe
Confidence            9999999999999999999999999  599999 77777764  44555555444      3448999999999999999


Q ss_pred             EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 010114          396 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK  475 (518)
Q Consensus       396 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~  475 (518)
                      |++++|.+|+||.+|++|+|.|||++|. .||.|.|+|||+.+|+..| +.++|||+.+++...+++++.++    ++++
T Consensus       424 l~IvdR~KdlIk~~G~qv~P~EiE~vL~-~hP~V~eaaVvgipDe~~G-e~p~A~VV~k~g~~lte~di~~~----v~k~  497 (537)
T KOG1176|consen  424 LYIVDRSKDLIKYGGEQVSPAEIEAVLL-THPDVLEAAVVGIPDEVWG-ETPAAFVVLKKGSTLTEKDIIEY----VRKK  497 (537)
T ss_pred             EEEecchhhheeeCCEEeCHHHHHHHHH-hCCCccEEEEEcccccccC-CcceEEEEecCCCcCCHHHHHHH----HHhh
Confidence            9999999999999999999999999998 9999999999999999999 99999999999888899898888    5567


Q ss_pred             cCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          476 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       476 l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      |++|++|..++|+|+||+|++|||+|+.||+++++.-
T Consensus       498 l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~  534 (537)
T KOG1176|consen  498 LPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLG  534 (537)
T ss_pred             CChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhcc
Confidence            8889999999999999999999999999999998653

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=2.9e-78  Score=595.79  Aligned_cols=475  Identities=28%  Similarity=0.417  Sum_probs=403.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.+.++++|+.|++.  + +||+|++++|+.+|.++++|||+++|++++|+.+.++++.+..+++++++|++|++
T Consensus        41 ~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~  119 (528)
T COG0365          41 LTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIAD  119 (528)
T ss_pred             EEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEe
Confidence            69999999999999999975  7 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      +......+.........+.... .++...          .. +.|.++......     ...+...+++|+++++|||||
T Consensus       120 d~~~~~gk~~~~~~~~~~~~~~-~iv~~r----------~~-~~~~~~~~~~~~-----~~~~~~~~~~dpl~ilYTSGT  182 (528)
T COG0365         120 DGTFRNGKEIALLEDADAVLSS-VVVVPR----------LG-LWYDEAVEKASE-----KFEFEPLPADDPLFLLYTSGT  182 (528)
T ss_pred             cccccccccccchhHHHHhhcc-eEEecc----------cc-ccHHHHhhccCC-----CCCccccCCCCeEEEEeCCCC
Confidence            8877665555554443333322 222211          01 567776665443     222333678999999999999


Q ss_pred             CCCCceEEeccchhHHHhhhcc-ccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCC--hhHHHHHHHH
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQD  234 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~-~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~--~~~~~~~i~~  234 (518)
                      ||+||||+++|..++....... ..+.+.++|++++..+..|++|... ++++|.+|+++++++...+  ++.+++.|++
T Consensus       183 TG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~  262 (528)
T COG0365         183 TGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEK  262 (528)
T ss_pred             CCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence            9999999999998766654433 3567789999999999999999988 9999999999999977654  8899999999


Q ss_pred             cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcc
Q 010114          235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA  314 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~  314 (518)
                      +++|.++++|+.+++|++....++.++++||.+.+.||+|+++..+|+.+.+ +++|.+.||+||+|+.+.....  +..
T Consensus       263 ~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~~gqTEtg~~~~~~~~--~~~  339 (528)
T COG0365         263 YKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRP--PVK  339 (528)
T ss_pred             hCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHh-CCCEeccccccccCccccCCCC--CcC
Confidence            9999999999999999998876778999999999999999999999999887 5999999999999966555544  445


Q ss_pred             cCCCCcccccccEEEECCCCCCCCCCCCeeeeeeecccccCCcccccccc-ccceeeeCCCCCCCceeccccceEEEecC
Q 010114          315 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNAD-HEEVYFRGMPMYKGMCLRRHGDIIKRTVG  393 (518)
Q Consensus       315 ~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  393 (518)
                      .++.|.|+||+++.++|++|++++.++   |+|++.....+....+++.. -....|.      +. ||+|||.+++|+|
T Consensus       340 ~g~~g~p~pG~~~~vvdd~g~~~~~~~---G~Lvi~~~~p~~~~~~w~d~er~~~~y~------~~-~y~tGD~~~~Ded  409 (528)
T COG0365         340 NGSSGLPLPGYAVRRVDDEGNPVPPGV---GELVVRLPWPGMALTYWNDPERYKEAYF------GR-WYRTGDWAERDED  409 (528)
T ss_pred             CCCCCCCCCCceeEEECCCCCcCCCCc---eEEEEeCCCchhhhhhhCCHHHHHHHHh------hc-eeecCceeEEccC
Confidence            556699999999999999999999997   99999432223333333321 1111111      11 8999999999999


Q ss_pred             ceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHH
Q 010114          394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  473 (518)
Q Consensus       394 g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  473 (518)
                      |+++|+||.||+||+.|++|.+.|||++|. +||.|.|++||+.+|+..| +++++||+++++..++  +|.+.++++++
T Consensus       410 Gy~~i~GR~DDvI~vsG~Rig~~EvE~~l~-~hP~VaEaAvVg~pd~~kg-~~v~afVvL~~g~~~~--~L~~ei~~~vr  485 (528)
T COG0365         410 GYFWLHGRSDDVIKVSGKRIGPLEIESVLL-AHPAVAEAAVVGVPDPGKG-QIVLAFVVLAAGVEPN--ELAEEIRRHVA  485 (528)
T ss_pred             CCEEEEeeccceEeccCeeccHHHHHHHHH-hCcceeeeEEEeccCCCCC-cEEEEEEEecCCCChH--HHHHHHHHHHH
Confidence            999999999999999999999999999998 9999999999999999999 9999999999998766  99999999998


Q ss_pred             hccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          474 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       474 ~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      +.+.+++.|+.|.++++||||.||||.|+.||+.+.+
T Consensus       486 ~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         486 RNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             hccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence            8888999999999999999999999999999999884

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=2.7e-75  Score=616.06  Aligned_cols=517  Identities=67%  Similarity=1.101  Sum_probs=422.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|++|+++++|||+++|++++|+++.++++++..+++.++++++|+++
T Consensus       209 ~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d  288 (728)
T PLN03052        209 MTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQD  288 (728)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcC
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ......+..+...++........+++................+|.+++........+....+...+.+++++|+||||||
T Consensus       289 ~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTT  368 (728)
T PLN03052        289 VIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTT  368 (728)
T ss_pred             ccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCC
Confidence            65444444455554443333333333211111111111234567776654321000111222223568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      |.||||+++|.+++.........+++.++|++++..+++|+++...++++|..|++++++++..++..+++.++++++|+
T Consensus       369 G~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~  448 (728)
T PLN03052        369 GEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTM  448 (728)
T ss_pred             CCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCE
Confidence            99999999999887766555555778999999999999999998778899999999999986666678999999999999


Q ss_pred             EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCC
Q 010114          240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS  319 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g  319 (518)
                      +.++|++++.|.+.....+.++++||.++++||+++++...++.+.++..++++.||+||+++.+...........+++|
T Consensus       449 l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g  528 (728)
T PLN03052        449 LGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFS  528 (728)
T ss_pred             EEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccc
Confidence            99999999999887655667899999999999999999988887766546799999999998755444333445568899


Q ss_pred             cccccccEEEECCCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEe
Q 010114          320 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQ  399 (518)
Q Consensus       320 ~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~  399 (518)
                      .|.+|++++|+|++|++++.|+.+.|||++++.+++....+.+......||.+.+..++++||+|||++++|+||+++++
T Consensus       529 ~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~  608 (728)
T PLN03052        529 TPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAH  608 (728)
T ss_pred             cCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEE
Confidence            99999999999999999998864469999976666554445555555567766777778889999999999999999999


Q ss_pred             eccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEec--CCCCCChhHHHHHHHHHHHhccC
Q 010114          400 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK--KGFTSQPDKLKMIFSKAIQSKLN  477 (518)
Q Consensus       400 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~--~~~~~~~~~l~~~~~~~~~~~l~  477 (518)
                      ||.||+||++|++|+|.|||++|...||.|.+++|++.+++..|++.+++||+++  ++...+.++|++.+++.+.++|+
T Consensus       609 GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~  688 (728)
T PLN03052        609 GRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLN  688 (728)
T ss_pred             ecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999954799999999999998866558899999998  55555678999999999999999


Q ss_pred             CccccceEEEecCCCCCCCchhHHHHHHHHHhccccccCCC
Q 010114          478 PLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI  518 (518)
Q Consensus       478 ~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~~~~~  518 (518)
                      ++++|..|+++++||+|.+||++|+.|++++.+... ++||
T Consensus       689 ~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~~~-~~~~  728 (728)
T PLN03052        689 PLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQELS-RSKL  728 (728)
T ss_pred             CccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhhhh-ccCC
Confidence            999999999999999999999999999999987776 6665

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-75  Score=538.33  Aligned_cols=494  Identities=20%  Similarity=0.235  Sum_probs=411.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+|+.+.++++|++|.+. +++||+|+++.||+.+|+.+.|||+++|.+.+++||.+..++++..|++.+++++|+.+
T Consensus        78 ~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~  157 (596)
T KOG1177|consen   78 LTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPP  157 (596)
T ss_pred             hhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccc
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhccCCCCcchhhhhccC---------CCceeeccccccCC---CCCCcccccchhhhhccCCCCCCC-CCCCCCCCCC
Q 010114           80 FILRGGRKFPLYSKVLGAA---------PLKAIVLPAIGNDV---GIPLREQDLSWKDFLSSVDYHPRP-NYYSPVYNPV  146 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  146 (518)
                      .+..    -..++-+++.+         ..+...++....-.   ......+.+.+.+++......... -+.-.....+
T Consensus       158 ~~k~----~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~p  233 (596)
T KOG1177|consen  158 QFKT----QNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGAFLLSEVLKAASKEERAKLADMSKWLSP  233 (596)
T ss_pred             hhhh----chHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCceehHHHHHhcchHHHHHHHhhhhhcCC
Confidence            6531    11112222111         01111111110000   012346777888888765541111 1111233467


Q ss_pred             CCEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCCh
Q 010114          147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLE  225 (518)
Q Consensus       147 ~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~  225 (518)
                      |+++.|.|||||||.|||+.+||.+++++.......+++.+++++++..|++|.+|... +++++..|+++++..+.+++
T Consensus       234 dd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~  313 (596)
T KOG1177|consen  234 DDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDP  313 (596)
T ss_pred             CCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCCh
Confidence            99999999999999999999999999999998888899999999999999999999765 99999999999999999999


Q ss_pred             hHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEe
Q 010114          226 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI  305 (518)
Q Consensus       226 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~  305 (518)
                      .+.+++|++++||.++++|.++..+++.++....+++++|..+.+|.++|+++.+.+.....-..+...||+||+++..+
T Consensus       314 k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~  393 (596)
T KOG1177|consen  314 KDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLF  393 (596)
T ss_pred             HHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCccee
Confidence            99999999999999999999999999999999999999999999999999999999987765456899999999997655


Q ss_pred             ecCCCC--CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceec
Q 010114          306 QGSLLQ--PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR  382 (518)
Q Consensus       306 ~~~~~~--~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (518)
                      .....+  .....++|..+++.+..++|..|.+++.+.+  |||++ +..++.+   |++...     ........++||
T Consensus       394 ~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~--Gel~iRGY~tMl~---Ywg~~~-----kT~eti~~drW~  463 (596)
T KOG1177|consen  394 MSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTK--GELLIRGYSTMLG---YWGEEE-----KTKETIGNDRWY  463 (596)
T ss_pred             eecCCCCHHHHHhhhhhcccccccccccCCCCccccCCC--ceEEEEechhhee---ecCCcc-----cchhhcccccce
Confidence            544443  3466799999999999999999999999996  99999 5545543   222111     111224678899


Q ss_pred             cccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC--C
Q 010114          383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS--Q  460 (518)
Q Consensus       383 ~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~--~  460 (518)
                      +|||++.+|++|.++++||.+|+|+.+|++|+|.|||+.|. +||.|.++.||+++|+..| +.++|+|.++++...  .
T Consensus       464 ~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~-~hp~V~~a~VVGV~D~R~G-E~VCA~vRLqe~~e~~~t  541 (596)
T KOG1177|consen  464 DTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLN-KHPLVKEAHVVGVPDERLG-EEVCACVRLQEGAEGKTT  541 (596)
T ss_pred             ecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHh-hCCCeeeEEEEccCCCccc-ceEEEEEEeecccccccc
Confidence            99999999999999999999999999999999999999998 9999999999999999999 999999999986543  4


Q ss_pred             hhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          461 PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       461 ~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      .++|+.+    ++.++..|.+|+.|+++++||+|.+|||+|.++|+++++++.-
T Consensus       542 ~E~lKa~----Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l~l  591 (596)
T KOG1177|consen  542 AETLKAM----CKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHLGL  591 (596)
T ss_pred             HHHHHHH----HhcccccccCCcEEEEeccCcccccccchhHHHHHHHHhhcce
Confidence            4455554    6678999999999999999999999999999999999987754

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.5e-71  Score=566.81  Aligned_cols=478  Identities=26%  Similarity=0.285  Sum_probs=393.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++|++++|+||.++..++.+.++.++++.+++++
T Consensus        39 ~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~  118 (534)
T COG0318          39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSA  118 (534)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ..      ................+...........     .++.++......    ........+++++++++||||||
T Consensus       119 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~yTSGTT  183 (534)
T COG0318         119 EF------AALLEAVAEALPVVLVVLLVGDADDRLP-----ITLEALAAEGPG----PDADARPVDPDDLAFLLYTSGTT  183 (534)
T ss_pred             cc------hhHHHHHhccCCcceEEEeccccccccc-----ccHHHHhhccCC----cccccCCCCCCCEEEEEeCCCCC
Confidence            42      1222333222222222221111110000     244454322211    01111115679999999999999


Q ss_pred             CCCceEEeccchhHHHhhhcccccc--CCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecC-CCChhHHHHHHHHc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG-SPLERSFGKFVQDA  235 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~  235 (518)
                      |.||||++||++++.+.......+.  +.+.|++++.+|++|.+|+.. ++.+++.|+++++.++ .+++..++..+.++
T Consensus       184 G~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~  263 (534)
T COG0318         184 GLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKY  263 (534)
T ss_pred             CCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHh
Confidence            9999999999999999888777887  899999999999999999987 5666999999988875 57888999999999


Q ss_pred             CccEEEechHHHHHHHhcccCCCCCccc-hhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-Cc
Q 010114          236 GVTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQ  313 (518)
Q Consensus       236 ~~t~l~~~P~~~~~l~~~~~~~~~~l~~-lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~  313 (518)
                      ++|.+.++|.++..+++.......++++ +|.+++||+++++++.+.+.+.++...++++||+||+++.++...... ..
T Consensus       264 ~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~  343 (534)
T COG0318         264 KVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA  343 (534)
T ss_pred             cceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhh
Confidence            9999999999999999998777777776 999999999999999999999986568999999999998766666655 24


Q ss_pred             ccCCCCcccccccEEEECCCCC-CCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEe
Q 010114          314 AFGAFSTATMTAGLVILDECGV-PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT  391 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~-~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~  391 (518)
                      ..+++|.|+|+++++|+|+++. +.| |+  +|||++ ++.++.+|.  .+++.+...+.      +++||+|||+|++|
T Consensus       344 ~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~--vGei~irgp~v~~GY~--~~pe~t~~~f~------~~gW~~TGDlg~~d  412 (534)
T COG0318         344 KPGSVGRPLPGVEVRIVDPDGGEVLP-GE--VGEIWVRGPNVMKGYW--NRPEATAEAFD------EDGWLRTGDLGYVD  412 (534)
T ss_pred             cCCcccccCCCcEEEEEeCCCCccCC-CC--ceEEEEECchhhhhhc--CChHHHHHhhc------cCCeeeecceEEEc
Confidence            6677799999999999996654 555 77  699999 788887642  22233322222      25899999999999


Q ss_pred             cCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC--CCChhHHHHHHH
Q 010114          392 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF--TSQPDKLKMIFS  469 (518)
Q Consensus       392 ~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~--~~~~~~l~~~~~  469 (518)
                      +||+++|.||.+|+|+.+|++|+|.+||+++. .||.|.+++|++++++..| +.++++++++++.  ..+.+++.++  
T Consensus       413 ~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~-~~~~V~~aavvgvpd~~~G-e~~~a~v~~~~~~~~~~~~~~i~~~--  488 (534)
T COG0318         413 EDGYLYIVGRLKDLIISGGENIYPEEIEAVLA-EHPAVAEAAVVGVPDERWG-ERVVAVVVLKPGGDAELTAEELRAF--  488 (534)
T ss_pred             CCccEEEEeccceEEEeCCeEECHHHHHHHHH-hCCCcceEEEEeCCCCccC-ceEEEEEEEcCCCCCCCCHHHHHHH--
Confidence            99999999999999999999999999999998 9999999999999999999 9999999998763  3355566666  


Q ss_pred             HHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          470 KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       470 ~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                        ++++++.+++|+.+++++++|+|++||++|+.|++.+..
T Consensus       489 --~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         489 --LRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             --HHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence              556889999999999999999999999999999999987

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.2e-71  Score=578.54  Aligned_cols=499  Identities=21%  Similarity=0.277  Sum_probs=387.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++|+++|+.|++. +++||+|+++++|++|+++++|||+++|++++|+++.++++++.+++++++++++|+++
T Consensus        93 ~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~  172 (647)
T PTZ00237         93 LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTN  172 (647)
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999976


Q ss_pred             hhhccCCCC---cchhhhhccCC---Cceeecccccc--CC------CCCCcccccchhhhhccCCCCCCCCCCCCCCCC
Q 010114           80 FILRGGRKF---PLYSKVLGAAP---LKAIVLPAIGN--DV------GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP  145 (518)
Q Consensus        80 ~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (518)
                      ......+..   +.+........   ...++......  ..      ..........|.+++.................+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (647)
T PTZ00237        173 YGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVE  252 (647)
T ss_pred             cceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeC
Confidence            432211111   11222221111   11111110000  00      000111234566655432110011112233456


Q ss_pred             CCCEEEEEeccCCCCCCceEEeccch-hHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCC-
Q 010114          146 VDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP-  223 (518)
Q Consensus       146 ~~~~~~i~~TSGtTG~pK~v~~s~~~-~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~-  223 (518)
                      ++++++|+|||||||.||||+++|.+ +..........+....++++++..|++|+.+...+++++..|+++++.+... 
T Consensus       253 ~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~  332 (647)
T PTZ00237        253 SSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGII  332 (647)
T ss_pred             CCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCC
Confidence            79999999999999999999999998 4443332233455677899999999999977666889999999999987531 


Q ss_pred             C----hhHHHHHHHHcCccEEEechHHHHHHHhccc-----CCCCCccchhhhhccCCCCCchhhhHhhhccccCceecc
Q 010114          224 L----ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-----LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES  294 (518)
Q Consensus       224 ~----~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~-----~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~  294 (518)
                      .    +..+++.++++++|++.++|++++.|++...     ....++++||.++++|+++++++.+++.+.+ ++++++.
T Consensus       333 ~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~  411 (647)
T PTZ00237        333 KNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRG  411 (647)
T ss_pred             CCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCEEee
Confidence            1    5789999999999999999999999987532     2345789999999999999999999998876 5889999


Q ss_pred             ccccccceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cc---cccCCccccccccccceee
Q 010114          295 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FP---LYLGASDRLLNADHEEVYF  370 (518)
Q Consensus       295 yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~---~~~~~~~~~~~~~~~~~~~  370 (518)
                      ||+||+++.+...........+++|.|+++++++|+|++|++++.|+  .|||++ ++   +++.++  +.+++.+..+|
T Consensus       412 yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge--~GEl~v~~p~~p~~~~gy--~~~~~~~~~~f  487 (647)
T PTZ00237        412 YGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNE--IGEVAFKLPMPPSFATTF--YKNDEKFKQLF  487 (647)
T ss_pred             echHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCC--ceEEEEeccCCchhhCce--eCCHHHHHHHH
Confidence            99999986544333222233478999999999999999999999998  699999 43   333332  22222222233


Q ss_pred             eCCCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEE
Q 010114          371 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF  450 (518)
Q Consensus       371 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~  450 (518)
                      .     ..++||+|||+|++|+||+++++||.||+||++|++|+|.+||++|. +||.|.+++|++.+++..| +.+++|
T Consensus       488 ~-----~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~-~~p~V~eaavvg~~~~~~g-~~~~a~  560 (647)
T PTZ00237        488 S-----KFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSIL-KHPLVLECCSIGIYDPDCY-NVPIGL  560 (647)
T ss_pred             h-----CCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHH-hCCCceeeEEEeeEcCCCC-CEEEEE
Confidence            1     23569999999999999999999999999999999999999999998 9999999999999999888 899999


Q ss_pred             EEecCC---CCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          451 VVLKKG---FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       451 v~~~~~---~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      |+++++   ...+.+++.+.+++.++++|+++++|+.|+++++||+|++||++|+.|++++..+
T Consensus       561 Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~  624 (647)
T PTZ00237        561 LVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDS  624 (647)
T ss_pred             EEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCC
Confidence            999853   2345567888888989999999999999999999999999999999999998654

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=2.5e-69  Score=569.49  Aligned_cols=495  Identities=24%  Similarity=0.337  Sum_probs=390.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++|+++++|||+++|++++|+++.++++++..+++.++++++|+++
T Consensus       121 ~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~  200 (666)
T PLN02654        121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCN  200 (666)
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcC
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcch---hhhhccCC---C-ceeeccccccC-C---CCC-CcccccchhhhhccCCCCCCCCCCCCCCCCCC
Q 010114           80 FILRGGRKFPLY---SKVLGAAP---L-KAIVLPAIGND-V---GIP-LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVD  147 (518)
Q Consensus        80 ~~~~~~~~~~~~---~~~~~~~~---~-~~~~~~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (518)
                      ......+.....   ........   . ...++...... .   ... .......|.++....     +.........++
T Consensus       201 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  275 (666)
T PLN02654        201 AVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNY-----PTKCEVEWVDAE  275 (666)
T ss_pred             ccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcC-----CCCCCceecCCC
Confidence            654333222221   11111110   0 00011000000 0   000 000112344443221     111122234679


Q ss_pred             CEEEEEeccCCCCCCceEEeccchhHHHh-hhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---
Q 010114          148 AVVNILFSSGTTGEPKAIPWTQLSSIRCT-AEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---  222 (518)
Q Consensus       148 ~~~~i~~TSGtTG~pK~v~~s~~~~~~~~-~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---  222 (518)
                      ++++++|||||||.||||+++|.+++... ......++++++|++++..|++|++|... ++++|+.|+++++.++.   
T Consensus       276 d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~  355 (666)
T PLN02654        276 DPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNY  355 (666)
T ss_pred             CceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCC
Confidence            99999999999999999999999976443 33444578899999999999999999765 88999999999998753   


Q ss_pred             CChhHHHHHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhcccc--Cceecccccc
Q 010114          223 PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NAIIESCGGT  298 (518)
Q Consensus       223 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~--~~i~~~yg~t  298 (518)
                      .++..+++.|+++++|+++++|++++.|++...  ....++++||.++++||++++++.+++.+.++.  +.+.+.||+|
T Consensus       356 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~T  435 (666)
T PLN02654        356 PDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQT  435 (666)
T ss_pred             CCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceecccccc
Confidence            457899999999999999999999999988653  244578899999999999999999999888753  6799999999


Q ss_pred             ccceeEeecCCC-CCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-c--ccccCCccccccccccceeeeCCC
Q 010114          299 ELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLLNADHEEVYFRGMP  374 (518)
Q Consensus       299 E~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~--~~~~~~~~~~~~~~~~~~~~~~~~  374 (518)
                      |+++........ .....+++|.|++|++++|+|++|++++.++  .|||++ +  +.++.+|  +.+.+.+...+    
T Consensus       436 E~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~--~Gel~v~~~~p~~~~gy--~~~~~~~~~~~----  507 (666)
T PLN02654        436 ETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGEC--SGYLCVKKSWPGAFRTL--YGDHERYETTY----  507 (666)
T ss_pred             ccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCC--ceEEEEcCCCchhhhhh--cCChHHHHHhh----
Confidence            998755433321 2346789999999999999999999998877  699999 4  3444332  11222111111    


Q ss_pred             CCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEec
Q 010114          375 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK  454 (518)
Q Consensus       375 ~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~  454 (518)
                      ....++||+|||++++|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+++||+++
T Consensus       508 ~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~-~~p~V~eaaVvg~~d~~~g-e~~~a~Vvl~  585 (666)
T PLN02654        508 FKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALV-SHPQCAEAAVVGIEHEVKG-QGIYAFVTLV  585 (666)
T ss_pred             hhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEeeEcCCCC-eEEEEEEEEC
Confidence            0123579999999999999999999999999999999999999999998 9999999999999999888 9999999999


Q ss_pred             CCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          455 KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       455 ~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      ++... .+++.+.++++++++|++++.|..|+++++||+|.+||++|+.|++++.++
T Consensus       586 ~~~~~-~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~  641 (666)
T PLN02654        586 EGVPY-SEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ  641 (666)
T ss_pred             CCCCC-CHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCC
Confidence            86543 357788888889999999999999999999999999999999999998764

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=7.7e-69  Score=549.87  Aligned_cols=487  Identities=71%  Similarity=1.176  Sum_probs=370.4

Q ss_pred             cCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechhhhccCCCCcchhhhhccCCCceeecccccc
Q 010114           31 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN  110 (518)
Q Consensus        31 ~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (518)
                      ++|++|+++++|||+++|++++|+++.++++++.++++.++++++|+++.........+.+.++........+++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            58999999999999999999999999999999999999999999999864211001112222222211112222211111


Q ss_pred             CCCCCCcccccchhhhhccCCCCC--CCCCCCCCCCCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCCC
Q 010114          111 DVGIPLREQDLSWKDFLSSVDYHP--RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG  188 (518)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~  188 (518)
                      ...........++.+++.......  ......+...+++++++|+|||||||.||||+++|.+++.+.......+++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  160 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG  160 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence            000000112335666543211100  000111122346899999999999999999999999988766555556678899


Q ss_pred             cEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhh
Q 010114          189 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS  266 (518)
Q Consensus       189 d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~  266 (518)
                      |++++.+|++|.+++..++.+++.|+++++.+...++..+++.|+++++|++.++|+++..|++...  ....++++||.
T Consensus       161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~  240 (499)
T PLN03051        161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV  240 (499)
T ss_pred             CEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheE
Confidence            9999999999999987788899999999988755667899999999999999999999999987643  34567899999


Q ss_pred             hhccCCCCCchhhhHhhhcc-ccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeee
Q 010114          267 FASTGETSNVDDDLWLSSKA-WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG  345 (518)
Q Consensus       267 i~~~Ge~l~~~~~~~~~~~~-~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~G  345 (518)
                      ++++|++++++..+++.+.. .++++++.||+||++..+...........+++|.|.++++++|+|++|++++.|+.++|
T Consensus       241 i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~G  320 (499)
T PLN03051        241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVG  320 (499)
T ss_pred             EEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcce
Confidence            99999999999888776522 23679999999998754333222223356789999999999999999999998853369


Q ss_pred             eeee-cccccCCccccccccccceeeeCCCCC--CCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHH
Q 010114          346 EVGL-FPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC  422 (518)
Q Consensus       346 el~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l  422 (518)
                      ||++ ++. .+....|.+.+.+..++.+.+..  ++.+||+|||+|++|+||+|+++||.||+||++|++|+|.|||++|
T Consensus       321 el~v~g~~-~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l  399 (499)
T PLN03051        321 EVALAPPM-LGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERAC  399 (499)
T ss_pred             EEEEecCc-CCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHH
Confidence            9999 553 22112233444344444333332  5667999999999999999999999999999999999999999999


Q ss_pred             hhcCcccceeeEEEeCCCCCCccEEEEEE---EecCCC-CCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCch
Q 010114          423 DQADESILETAAISVSPAGGGPEVLVIFV---VLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK  498 (518)
Q Consensus       423 ~~~~~~v~~~~vv~~~~~~~g~~~~~~~v---~~~~~~-~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK  498 (518)
                      .+.||+|.+++|++++++..|.+.+++||   +++++. ..+.+++.+++++++.++|+++++|..|+++++||+|++||
T Consensus       400 ~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GK  479 (499)
T PLN03051        400 DRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNK  479 (499)
T ss_pred             HhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCcc
Confidence            72399999999999999887756788888   777654 35678899999998989999988888899999999999999


Q ss_pred             hHHHHHHHHHhccccccCCC
Q 010114          499 LLRRVLRDQIKHELSVRSRI  518 (518)
Q Consensus       499 v~R~~l~~~~~~~~~~~~~~  518 (518)
                      ++|++|++.+.++++.||+|
T Consensus       480 i~r~~L~~~~~~~~~~~~~~  499 (499)
T PLN03051        480 LLRRVLRDQLKKELSGRSKL  499 (499)
T ss_pred             HHHHHHHHHHHHhhccccCC
Confidence            99999999999999999986

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.8e-68  Score=561.72  Aligned_cols=498  Identities=24%  Similarity=0.377  Sum_probs=386.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++++|+++
T Consensus        84 ~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~  163 (628)
T TIGR02316        84 LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSAD  163 (628)
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECC
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhccCCCCcc---hhhhhccC--CCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           80 FILRGGRKFPL---YSKVLGAA--PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        80 ~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      ......+....   +.......  ....++..................+.++......    ...+.....++++++|+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ily  239 (628)
T TIGR02316       164 AGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAALRTQHED----AQVPVEWLESNEPSYILY  239 (628)
T ss_pred             ccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHHHHhhcccc----CCCCceecCCCCcEEEEE
Confidence            53322222111   11111111  1112222111100000001123455555443211    111122245689999999


Q ss_pred             ccCCCCCCceEEeccchhHHH-hhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecC---CCChhHHH
Q 010114          155 SSGTTGEPKAIPWTQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG---SPLERSFG  229 (518)
Q Consensus       155 TSGtTG~pK~v~~s~~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~---~~~~~~~~  229 (518)
                      ||||||.||||+++|.+++.+ .......++++++|++++..|++|++|+.. ++++|+.|+++++.+.   ..++..++
T Consensus       240 TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~  319 (628)
T TIGR02316       240 TSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWW  319 (628)
T ss_pred             CCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHH
Confidence            999999999999999997544 333444577899999999999999999754 8899999999999874   23578899


Q ss_pred             HHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeec
Q 010114          230 KFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG  307 (518)
Q Consensus       230 ~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~  307 (518)
                      +.++++++|+++++|++++.|.+...  ....++++||.++++||++++++.+++.+.+ +..+++.||+||++..++..
T Consensus       320 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~  398 (628)
T TIGR02316       320 SIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAI  398 (628)
T ss_pred             HHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecC
Confidence            99999999999999999999887643  2456789999999999999999999988776 57899999999998544333


Q ss_pred             CCC---CCcccCCCCcccccccEEEECC-CCCCCCCCCCeeeeeee-cccccCCcccccccc-cc-ceeeeCCCCCCCce
Q 010114          308 SLL---QPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNAD-HE-EVYFRGMPMYKGMC  380 (518)
Q Consensus       308 ~~~---~~~~~~~~g~~~~~~~~~i~~~-~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~  380 (518)
                      ...   .....+++|.|+++++++|+|+ +|++++.|+  .|||++ ++...+....|.+.. .. ..++.    ..+++
T Consensus       399 ~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~--~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~----~~~~~  472 (628)
T TIGR02316       399 MPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNE--KGVLTVVPPLPPGCLSTVWGDDARFLKTYWS----HFKRP  472 (628)
T ss_pred             CCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCC--cEEEEEecCCCccccccccCChHHHHHhhhh----cCCCC
Confidence            221   1235678999999999999997 799999998  699999 552111111122211 11 11211    12357


Q ss_pred             eccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC-
Q 010114          381 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS-  459 (518)
Q Consensus       381 ~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~-  459 (518)
                      ||+|||+|++|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+++||+++++... 
T Consensus       473 ~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~-~~p~V~ea~Vvg~~d~~~g-~~~~~~vv~~~~~~~~  550 (628)
T TIGR02316       473 LYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVS-SHPSVAEVAVVGVHDELKG-QVAVVFAILKESDSAG  550 (628)
T ss_pred             EEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeeecCCCC-eEEEEEEEEcCCcccc
Confidence            9999999999999999999999999999999999999999998 9999999999999999888 999999998865432 


Q ss_pred             ---ChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          460 ---QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       460 ---~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                         +.+.+.+.+++++.++|++|++|..|+++++||+|++||++|+.|++++.+.
T Consensus       551 ~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~  605 (628)
T TIGR02316       551 DAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGR  605 (628)
T ss_pred             cccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCC
Confidence               2346777888889999999999999999999999999999999999988643

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=8.5e-69  Score=528.82  Aligned_cols=499  Identities=32%  Similarity=0.426  Sum_probs=424.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||.|+.+++.++|+.|..+ +++||+|++++|+.+|++++++||.++|++.+++...+++.++...++.+++|++|+.+
T Consensus        97 ~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d  176 (626)
T KOG1175|consen   97 WTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQD  176 (626)
T ss_pred             EEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEe
Confidence            58999999999999999987 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ......+.........+................-.......+.+.+++.....     ...+...+.+|+.+|+||||||
T Consensus       177 ~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~-----~~~~~~~~~edpl~IlfTSGtT  251 (626)
T KOG1175|consen  177 VVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASP-----EHPCVPVKAEDPLFILFTSGTT  251 (626)
T ss_pred             eeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcCC-----CCCceecCccCceEEEecCCCC
Confidence            87766666666555554443333221111111000111224456666555443     2336677889999999999999


Q ss_pred             CCCceEEeccch-hHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCC-ChhHHHHHHHHcC
Q 010114          160 GEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP-LERSFGKFVQDAG  236 (518)
Q Consensus       160 G~pK~v~~s~~~-~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~-~~~~~~~~i~~~~  236 (518)
                      |.||++.+++.. ++..+......++++++|+++++....|+.|... ++++|++|+++++++... ++..+++.+.+++
T Consensus       252 g~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~  331 (626)
T KOG1175|consen  252 GKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYK  331 (626)
T ss_pred             CCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcc
Confidence            999999988865 5666666677789999999999999999999987 889999999999998765 7899999999999


Q ss_pred             ccEEEechHHHHHHHhcccCC--CCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-Cc
Q 010114          237 VTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQ  313 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~--~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~  313 (518)
                      +|.++..|..++.|.+.....  ..++++||.+.++||+++++..+|+.+.+...+|++.||+||+|..++.+.... +.
T Consensus       332 it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~  411 (626)
T KOG1175|consen  332 VTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPI  411 (626)
T ss_pred             eEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCc
Confidence            999999999999887765433  334567999999999999999999998886557999999999999888887777 78


Q ss_pred             ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeeeccccc-CCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      ++++++.|.+++.+.|+|++|..++.+. +.|+|++.+... +...-+++..   .+|++..+.+-.++|+|||.+++|+
T Consensus       412 ~pg~~~~p~~g~~v~i~de~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~---erf~~~yf~k~pg~y~tGD~~~rd~  487 (626)
T KOG1175|consen  412 KPGSAGKPFPGYDVQILDENGNELPPST-GNGELRLKPPWPPGMFRTLWGNH---ERFRAAYFKKFPGYYFTGDGGRRDE  487 (626)
T ss_pred             CccccCCCCCCcceEEECCCCCCcCCCC-ceeEEEEeCCCCccccccccCCH---HHhhhhhcccCCceEEecCceEEcC
Confidence            9999999999999999999999999875 479999955444 4333233322   2566666666778999999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      ||++++.||.||+++++|+++++.|||+++. +||.|.|++||+.+++..| |.+++||+++++ ..+.++|.++|++++
T Consensus       488 dGY~~i~GR~DDviNvsGhRigtaEIE~al~-~hp~VaEsAvVg~p~~~~g-e~v~aFvvl~~g-~~~~~~L~kel~~~V  564 (626)
T KOG1175|consen  488 DGYYWILGRVDDVINVSGHRIGTAEIESALV-EHPAVAESAVVGSPDPIKG-EVVLAFVVLKSG-SHDPEQLTKELVKHV  564 (626)
T ss_pred             CceEEEEecccccccccceeecHHHHHHHHh-hCcchhheeeecCCCCCCC-eEEEEEEEEcCC-CCChHHHHHHHHHHH
Confidence            9999999999999999999999999999997 9999999999999999988 999999999998 678899999999999


Q ss_pred             HhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          473 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       473 ~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      +..+++++.|+.|.+++.||+|.|||+.|+.||+.+..+
T Consensus       565 R~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  565 RSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK  603 (626)
T ss_pred             HhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence            999999999999999999999999999999999999877

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=8.8e-68  Score=557.33  Aligned_cols=494  Identities=27%  Similarity=0.422  Sum_probs=390.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++|++++|+++.++++++..+++.++++++|+++
T Consensus        89 ~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~  168 (625)
T TIGR02188        89 ITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITAD  168 (625)
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcc---hhhhhccCC--Cceeecccc-ccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEE
Q 010114           80 FILRGGRKFPL---YSKVLGAAP--LKAIVLPAI-GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL  153 (518)
Q Consensus        80 ~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  153 (518)
                      ......+....   +.......+  ....+.... .....+ .......+.+++.....     ...+....++++++|+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~il  242 (625)
T TIGR02188       169 EGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPW-VEGRDVWWHDLMAKASA-----YCEPEPMDSEDPLFIL  242 (625)
T ss_pred             ccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCc-cccccccHHHHHhhcCC-----CCCceecCCCCceEEE
Confidence            54332222221   222222222  111121111 111000 01112345555443211     1223345678999999


Q ss_pred             eccCCCCCCceEEeccchhHHHhh-hccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhHH
Q 010114          154 FSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSF  228 (518)
Q Consensus       154 ~TSGtTG~pK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~  228 (518)
                      |||||||.||||+++|.+++.+.. .....+++.++|++++..|++|+.+... ++.++..|+++++.+..   .++..+
T Consensus       243 ~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~  322 (625)
T TIGR02188       243 YTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRF  322 (625)
T ss_pred             ecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHH
Confidence            999999999999999999765543 2333467889999999999999998754 88999999999998642   357899


Q ss_pred             HHHHHHcCccEEEechHHHHHHHhcccC--CCCCccchhhhhccCCCCCchhhhHhhhcccc--CceeccccccccceeE
Q 010114          229 GKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NAIIESCGGTELSSAY  304 (518)
Q Consensus       229 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~--~~i~~~yg~tE~~~~~  304 (518)
                      ++.++++++|++.++|++++.|.+....  ...++++||.++++|+++++++.+++.+.++.  +++++.||+||+++.+
T Consensus       323 ~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~  402 (625)
T TIGR02188       323 WEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIM  402 (625)
T ss_pred             HHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCce
Confidence            9999999999999999999999886532  34568899999999999999999999887653  7899999999998765


Q ss_pred             eecCCC-CCcccCCCCcccccccEEEECCCCCCCC-CCCCeeeeeee-c--ccccCCccccccccccceeeeCCCCCCCc
Q 010114          305 IQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYP-DDQPCVGEVGL-F--PLYLGASDRLLNADHEEVYFRGMPMYKGM  379 (518)
Q Consensus       305 ~~~~~~-~~~~~~~~g~~~~~~~~~i~~~~g~~~~-~~~~~~Gel~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (518)
                      +..... .....+++|.|+++++++|+|++|++++ .|+  .|||++ +  +.++.+|.  .+.+.....+    ....+
T Consensus       403 ~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~--~GeL~v~~p~p~~~~gy~--~~~~~~~~~~----~~~~~  474 (625)
T TIGR02188       403 ITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGE--GGYLVIKQPWPGMLRTIY--GDHERFVDTY----FSPFP  474 (625)
T ss_pred             eecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCC--eEEEEEccCCCccccccc--CChHHHHHHH----hccCC
Confidence            443322 2345688999999999999999999999 888  699999 4  24443321  1221111111    11235


Q ss_pred             eeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC
Q 010114          380 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS  459 (518)
Q Consensus       380 ~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~  459 (518)
                      +||+|||++++|+||++++.||.||+||++|++|+|.+||++|. +||.|.+++|++.+++..| +.++++|+++++...
T Consensus       475 g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~~~~~g-~~~~a~vv~~~~~~~  552 (625)
T TIGR02188       475 GYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALV-SHPAVAEAAVVGIPDDIKG-QAIYAFVTLKDGYEP  552 (625)
T ss_pred             CEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEEEEEeCCCCCC
Confidence            69999999999999999999999999999999999999999998 8999999999999998888 999999999876543


Q ss_pred             ChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          460 QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       460 ~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      + +++.+.++++++++|+++++|+.|+++++||+|.+||++|+.|++++..+
T Consensus       553 ~-~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~  603 (625)
T TIGR02188       553 D-DELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE  603 (625)
T ss_pred             C-HHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence            3 45677788889999999999999999999999999999999999998766

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6e-68  Score=551.00  Aligned_cols=470  Identities=21%  Similarity=0.217  Sum_probs=384.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        75 ~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  154 (549)
T PRK07788         75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDD  154 (549)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ....      .+..+.........+.......  .....+...+.+++......       +.....+++++++||||||
T Consensus       155 ~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~TSGTT  219 (549)
T PRK07788        155 EFTD------LLSALPPDLGRLRAWGGNPDDD--EPSGSTDETLDDLIAGSSTA-------PLPKPPKPGGIVILTSGTT  219 (549)
T ss_pred             hhHH------HHHhhccccccceEEEEecCcc--ccCCcCcccHHHHhcCCCCC-------CCCCCCCCCcEEEECCCCC
Confidence            5431      1211111111111111100000  01113345666665533221       1112346788999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      |.||+|.++|.++...+......+++.++|+++...|++|.+|+..++.++..|+++++.. ..++..+++.++++++|+
T Consensus       220 G~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~vt~  298 (549)
T PRK07788        220 GTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRR-RFDPEATLEDIAKHKATA  298 (549)
T ss_pred             CCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHhCCcE
Confidence            9999999999999988777777778889999999999999999987888999999998874 678899999999999999


Q ss_pred             EEechHHHHHHHhcccC--CCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          240 LGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      +.++|+++..+++....  ...+++++|.+++||+++++++.+++.+.+ ++.+++.||+||++..............++
T Consensus       299 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~  377 (549)
T PRK07788        299 LVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTEVAFATIATPEDLAEAPGT  377 (549)
T ss_pred             EEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcchhchhhccChhhhhhcCCC
Confidence            99999999999887654  556788999999999999999999998876 567999999999986555444333345678


Q ss_pred             CCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114          318 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  396 (518)
Q Consensus       318 ~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  396 (518)
                      +|.|+++++++|+|+++++++.|+  .|||++ ++..+.+|   .+....         ...++||+|||++++|+||++
T Consensus       378 vG~~~~~~~~~i~d~~~~~~~~g~--~Gel~v~g~~~~~gY---~~~~~~---------~~~~g~~~TGDl~~~~~~g~l  443 (549)
T PRK07788        378 VGRPPKGVTVKILDENGNEVPRGV--VGRIFVGNGFPFEGY---TDGRDK---------QIIDGLLSSGDVGYFDEDGLL  443 (549)
T ss_pred             cccCCCCcEEEEECCCcCCCCCCC--eEEEEEeCCCccccc---cCCCcc---------cccCCceecCceEEEcCCCCE
Confidence            999999999999999999999998  699999 55554432   222111         123579999999999999999


Q ss_pred             EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      ++.||.+|+||++|++|+|.+||++|. ++|+|.+++|++.+++..| +.+.++|+++++...+.+++.++    ++++|
T Consensus       444 ~~~GR~dd~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----~~~~l  517 (549)
T PRK07788        444 FVDGRDDDMIVSGGENVFPAEVEDLLA-GHPDVVEAAVIGVDDEEFG-QRLRAFVVKAPGAALDEDAIKDY----VRDNL  517 (549)
T ss_pred             EEeccCcceEEECCEEECHHHHHHHHH-hCCCeeEEEEECCcCcccc-cEEEEEEEeCCCCCCCHHHHHHH----HHHhh
Confidence            999999999999999999999999997 9999999999999988888 89999999987666666665555    56678


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHHH
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~  507 (518)
                      ++|++|..|+++++||+|++||++|++|+++
T Consensus       518 ~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        518 ARYKVPRDVVFLDELPRNPTGKVLKRELREM  548 (549)
T ss_pred             hcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence            9999999999999999999999999999753

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-66  Score=549.03  Aligned_cols=494  Identities=27%  Similarity=0.389  Sum_probs=387.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        99 lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~  178 (637)
T PRK00174         99 ITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITAD  178 (637)
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcC
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcc---hhhhhccCCC-ceeecccc-ccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           80 FILRGGRKFPL---YSKVLGAAPL-KAIVLPAI-GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        80 ~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      .........+.   +......... ..+++... ...... .......+.++......     ...+.....+++++++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~  252 (637)
T PRK00174        179 EGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDW-VEGRDLWWHELVAGASD-----ECEPEPMDAEDPLFILY  252 (637)
T ss_pred             ccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCc-CCCCcccHHHHHhhcCC-----CCCccccCCCCcEEEEE
Confidence            54322211111   1122221111 11221111 111100 01123345555432211     11223345689999999


Q ss_pred             ccCCCCCCceEEeccchhHHHhhh-ccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhHHH
Q 010114          155 SSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFG  229 (518)
Q Consensus       155 TSGtTG~pK~v~~s~~~~~~~~~~-~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~  229 (518)
                      ||||||.||||+++|.+++.+... ....+++.++|++++..|++|+.+... ++.+++.|+++++.+..   .++..++
T Consensus       253 TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~  332 (637)
T PRK00174        253 TSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFW  332 (637)
T ss_pred             CCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHH
Confidence            999999999999999998765432 333467888999999999999998764 88999999999997642   3578999


Q ss_pred             HHHHHcCccEEEechHHHHHHHhcccC--CCCCccchhhhhccCCCCCchhhhHhhhcccc--CceeccccccccceeEe
Q 010114          230 KFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NAIIESCGGTELSSAYI  305 (518)
Q Consensus       230 ~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~--~~i~~~yg~tE~~~~~~  305 (518)
                      +.|+++++|++.++|++++.|++....  ...++++||.++++||++++++.+++.+.++.  +++++.||+||++....
T Consensus       333 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  412 (637)
T PRK00174        333 EVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMI  412 (637)
T ss_pred             HHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceE
Confidence            999999999999999999999886532  34568899999999999999999998877643  68999999999987654


Q ss_pred             ecCCC-CCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-c--ccccCCccccccccccceeeeCCCCCCCcee
Q 010114          306 QGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLLNADHEEVYFRGMPMYKGMCL  381 (518)
Q Consensus       306 ~~~~~-~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (518)
                      ..... .....+++|.|++|++++|+|++|++++.|+  .|||++ +  +.++.+|+  .+.+...    ...+...++|
T Consensus       413 ~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~--~Gel~v~g~~p~~~~gy~--~~~~~~~----~~~~~~~~g~  484 (637)
T PRK00174        413 TPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGE--GGNLVIKDPWPGMMRTIY--GDHERFV----KTYFSTFKGM  484 (637)
T ss_pred             ecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCC--cEEEEEcCCCCccccccc--CCHHHHH----HhhhcCCCCE
Confidence            33222 2334678999999999999999999999998  699999 4  34444322  1221111    1111234579


Q ss_pred             ccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCCh
Q 010114          382 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP  461 (518)
Q Consensus       382 ~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~  461 (518)
                      |+|||++++|+||++++.||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|++.++... .
T Consensus       485 ~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~~~V~~~~Vvg~~~~~~g-~~~~a~vv~~~~~~~-~  561 (637)
T PRK00174        485 YFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKVAEAAVVGRPDDIKG-QGIYAFVTLKGGEEP-S  561 (637)
T ss_pred             EECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEEEEEECCCCCC-C
Confidence            999999999999999999999999999999999999999997 9999999999999998888 899999999876543 3


Q ss_pred             hHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          462 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       462 ~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      +++.+.+++++.++|++++.|..|+++++||+|++||++|+.|++++.++
T Consensus       562 ~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  611 (637)
T PRK00174        562 DELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE  611 (637)
T ss_pred             HHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence            45666788888899999999999999999999999999999999998765

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.1e-67  Score=552.64  Aligned_cols=496  Identities=28%  Similarity=0.393  Sum_probs=385.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++|++++|+++.++++++.++++.++++++|+++
T Consensus       115 ~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~  194 (655)
T PRK03584        115 LSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVD  194 (655)
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcch---hhhhccCCC--ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           80 FILRGGRKFPLY---SKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        80 ~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      ............   ..+......  ..+++.................|.+++.....    ..........+++++|+|
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ily  270 (655)
T PRK03584        195 GYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEA----AELEFEPVPFDHPLWILY  270 (655)
T ss_pred             ccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHhhcccc----CCCCceecCCCCcEEEEe
Confidence            543222222222   222222221  11111111100001112234456666542111    112223345689999999


Q ss_pred             ccCCCCCCceEEeccchhHHH-hhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC---CCChhHHHH
Q 010114          155 SSGTTGEPKAIPWTQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG---SPLERSFGK  230 (518)
Q Consensus       155 TSGtTG~pK~v~~s~~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~  230 (518)
                      ||||||.||||+++|.+++.+ .......+++.++|++++..++.|+++. .++++++.|+++++.+.   ..++..+++
T Consensus       271 TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~  349 (655)
T PRK03584        271 SSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWD  349 (655)
T ss_pred             cCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHH
Confidence            999999999999999987643 4444456778999999999999988653 36789999999999864   246789999


Q ss_pred             HHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccc-cCceeccccccccceeEeec
Q 010114          231 FVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQG  307 (518)
Q Consensus       231 ~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~~  307 (518)
                      .++++++|++..+|++++.+.+...  ....++++||.++++||++++++.+++.+.++ +..+.+.||+||++..+...
T Consensus       350 ~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~  429 (655)
T PRK03584        350 LAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGG  429 (655)
T ss_pred             HHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccC
Confidence            9999999999999999999876532  23467899999999999999999999988763 57799999999986544333


Q ss_pred             CCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cc--cccCCccccccccccceeeeCCCCCCCceeccc
Q 010114          308 SLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FP--LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH  384 (518)
Q Consensus       308 ~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T  384 (518)
                      ........+++|.|.+|++++|+|++|.++ .|+  .|||++ ++  .+..+   |.+......+. ........+||+|
T Consensus       430 ~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~--~GeL~v~gp~p~~~~g---y~~~~~~~~~~-~~~~~~~~g~~~T  502 (655)
T PRK03584        430 NPLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGE--VGELVCTKPFPSMPLG---FWNDPDGSRYR-DAYFDTFPGVWRH  502 (655)
T ss_pred             CCCCCcCCCccCCCcCCceeEEECCCCCCC-CCC--ceEEEEccCCCCCcce---eeCCCccchHH-HhhhccCCCEeec
Confidence            333344568899999999999999999998 677  699999 43  23332   33322211111 1111122357899


Q ss_pred             cceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHH
Q 010114          385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL  464 (518)
Q Consensus       385 GD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l  464 (518)
                      ||+|++|+||+++++||.||+||++|++|+|.|||++|. +||.|.+++|++.+++..| +.+++||+++++... .+++
T Consensus       503 GDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~-~~p~V~ea~vvg~~~~~~g-~~~~a~vv~~~~~~~-~~~~  579 (655)
T PRK03584        503 GDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVE-ALPEVLDSLVIGQEWPDGD-VRMPLFVVLAEGVTL-DDAL  579 (655)
T ss_pred             CCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-EEEEEEEEECCCCCC-cHHH
Confidence            999999999999999999999999999999999999997 9999999999999998888 999999999876443 3566


Q ss_pred             HHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          465 KMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       465 ~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      .+.+++++.++|+++++|..|+++++||+|++||++|+.|++++.+.
T Consensus       580 ~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~  626 (655)
T PRK03584        580 RARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHGR  626 (655)
T ss_pred             HHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence            77788889999999999999999999999999999999999998754

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=9.9e-67  Score=549.00  Aligned_cols=498  Identities=28%  Similarity=0.367  Sum_probs=380.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++|++++|+++.++++++..++++++|+++|+++
T Consensus       115 ~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~  194 (652)
T TIGR01217       115 VTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVD  194 (652)
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcc---hhhhhccCCC-ceeeccc-cccC-CCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEE
Q 010114           80 FILRGGRKFPL---YSKVLGAAPL-KAIVLPA-IGND-VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL  153 (518)
Q Consensus        80 ~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  153 (518)
                      ......+....   +..+....+. ...++.. .... ...........+.+++.....    ........+.+++++|+
T Consensus       195 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~il  270 (652)
T TIGR01217       195 GYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQA----AELVFEQLPFDHPLWIL  270 (652)
T ss_pred             ccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcccC----CCCCceecCCCCCEEEE
Confidence            54322222222   2222222221 1121111 0100 000011133456666543211    01112234568999999


Q ss_pred             eccCCCCCCceEEeccchhHH-HhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC---CChhHHH
Q 010114          154 FSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFG  229 (518)
Q Consensus       154 ~TSGtTG~pK~v~~s~~~~~~-~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~---~~~~~~~  229 (518)
                      |||||||.||||+++|.+++. ........+++.++|++++..|+.|+++. .++.++..|+++++.+..   .++..++
T Consensus       271 yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~  349 (652)
T TIGR01217       271 FSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNVLW  349 (652)
T ss_pred             EcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCCchHHH
Confidence            999999999999999998654 33334445678999999999999998643 356899999999998642   2567899


Q ss_pred             HHHHHcCccEEEechHHHHHHHhcc--cCCCCCccchhhhhccCCCCCchhhhHhhhccc-cCceeccccccccceeEee
Q 010114          230 KFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQ  306 (518)
Q Consensus       230 ~~i~~~~~t~l~~~P~~~~~l~~~~--~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~  306 (518)
                      +.++++++|++..+|.+++.+.+..  .....++++||.++++||++++++.+++.+.++ +..+.+.||+||++..+..
T Consensus       350 ~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~  429 (652)
T TIGR01217       350 DIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAG  429 (652)
T ss_pred             HHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccC
Confidence            9999999999988888887776542  124567899999999999999999999887664 2457899999997543333


Q ss_pred             cCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceecccc
Q 010114          307 GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG  385 (518)
Q Consensus       307 ~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG  385 (518)
                      .........+++|.|.+|++++|+|++|++++ |+  .|||++ ++. .+....|++......+. .....+.++||+||
T Consensus       430 ~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~~-g~--~GEl~v~gp~-p~~~~gy~~~~~~t~~~-~~~~~~~~g~~~tG  504 (652)
T TIGR01217       430 ANPTLPVHIGEIQAPGLGTAVQSWDPEGKPVT-GE--VGELVCTNPM-PSMPIRFWNDPDGSKYR-DAYFDTYPGVWRHG  504 (652)
T ss_pred             CCCCCCCcCCccCCCcCCCceEEECCCCCCCC-CC--ccEEEEecCC-CccccceeCCCccchhH-HhhhcCCCCEEEcC
Confidence            22333345678899999999999999999984 77  699999 432 11112233332211111 00011234688999


Q ss_pred             ceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHH
Q 010114          386 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK  465 (518)
Q Consensus       386 D~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~  465 (518)
                      |+|++|+||+|+++||.||+||++|++|+|.|||++|. +||.|.+++|++.+++..| +.+++||+++++...+ +++.
T Consensus       505 Dlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~-~~p~V~eaavvg~~~~~~g-e~~~afVv~~~~~~~~-~~~~  581 (652)
T TIGR01217       505 DWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVE-RLDEVRESLCIGQEQPDGG-YRVVLFVHLAPGATLD-DALL  581 (652)
T ss_pred             CcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHH-hCCCcceEEEEeeecCCCC-EEEEEEEEECCCCCCC-HHHH
Confidence            99999999999999999999999999999999999998 9999999999999998888 9999999998765433 4667


Q ss_pred             HHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          466 MIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       466 ~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      +.++++++++|++++.|..|+++++||+|++||++|+.|++.+..+
T Consensus       582 ~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~  627 (652)
T TIGR01217       582 DRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGT  627 (652)
T ss_pred             HHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCC
Confidence            7788889999999999999999999999999999999999998544

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.2e-66  Score=547.39  Aligned_cols=488  Identities=21%  Similarity=0.223  Sum_probs=386.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++| +++|+++.++++++.++++.++++++|+++
T Consensus        59 ~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~  137 (632)
T PRK07529         59 WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLG  137 (632)
T ss_pred             eEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeC
Confidence            69999999999999999999 9999999999999999999999999999 569999999999999999999999999986


Q ss_pred             hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCC-----------CcccccchhhhhccCCCCCCCCCCCCCCCCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIP-----------LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVD  147 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (518)
                      ..... +..+.+.......... .++..........+           ...+...+.+.+.....   ..........++
T Consensus       138 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d  213 (632)
T PRK07529        138 PFPGT-DIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPG---DRLFSGRPIGPD  213 (632)
T ss_pred             CCCCc-hHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccccccCCHHHHHhcCCC---ccccccCCCCcC
Confidence            43110 0011111122222111 11111111100000           11223345554443221   111122233568


Q ss_pred             CEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCC--C
Q 010114          148 AVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP--L  224 (518)
Q Consensus       148 ~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~--~  224 (518)
                      ++++++|||||||.||+|.++|.+++.+.......+.+.++|++++.+|++|.+++.. ++.++..|+++++.++..  +
T Consensus       214 ~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~  293 (632)
T PRK07529        214 DVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRG  293 (632)
T ss_pred             ceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCc
Confidence            9999999999999999999999999888776666677889999999999999999875 889999999999976421  1


Q ss_pred             ---hhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccc
Q 010114          225 ---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS  301 (518)
Q Consensus       225 ---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~  301 (518)
                         ...+++.++++++|.+.++|+++..|++... ...+++++|.+++||+++++++.+++.+.+ ++++++.||+||++
T Consensus       294 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~  371 (632)
T PRK07529        294 PGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEAT  371 (632)
T ss_pred             chHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccC
Confidence               3578899999999999999999999988753 345789999999999999999999998776 68899999999998


Q ss_pred             eeEeecCCCCCcccCCCCcccccccEEEE--CCCC---CCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCC
Q 010114          302 SAYIQGSLLQPQAFGAFSTATMTAGLVIL--DECG---VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM  375 (518)
Q Consensus       302 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~--~~~g---~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (518)
                      .++..+........+++|.|+|++.++++  |++|   ++++.|+  .|||++ ++.++.+|.   +...+...+     
T Consensus       372 ~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~--~Gel~v~gp~v~~GY~---~~~~~~~~~-----  441 (632)
T PRK07529        372 CVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDE--VGVLCIAGPNVFSGYL---EAAHNKGLW-----  441 (632)
T ss_pred             cccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCC--ceEEEEECCCcccccc---CCccccccc-----
Confidence            76655554444567899999999998885  6777   7889998  699999 777776632   333333222     


Q ss_pred             CCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecC
Q 010114          376 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK  455 (518)
Q Consensus       376 ~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~  455 (518)
                       .+++||+|||+|++|+||++++.||.+|+||++|.+|+|.+||++|. +||+|.+++|++.+++..| +.++++|++.+
T Consensus       442 -~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~-~~p~V~~a~vvg~~d~~~g-e~~~a~v~l~~  518 (632)
T PRK07529        442 -LEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALL-RHPAVALAAAVGRPDAHAG-ELPVAYVQLKP  518 (632)
T ss_pred             -cCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCCC-ceeEEEEEEcC
Confidence             24679999999999999999999999999999999999999999998 8999999999999998888 99999999998


Q ss_pred             CCCCChhHHHHHHHHHHHhccC-CccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          456 GFTSQPDKLKMIFSKAIQSKLN-PLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       456 ~~~~~~~~l~~~~~~~~~~~l~-~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      +...+.+++.++++    ++++ .+++|..|+++++||+|.+||++|+.|++.+..+.
T Consensus       519 ~~~~~~~~l~~~~~----~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~~~  572 (632)
T PRK07529        519 GASATEAELLAFAR----DHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIRRV  572 (632)
T ss_pred             CCCCCHHHHHHHHH----HhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHHHH
Confidence            77777777777755    4554 47899999999999999999999999999886543

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.2e-66  Score=536.13  Aligned_cols=474  Identities=17%  Similarity=0.181  Sum_probs=370.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF   80 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~   80 (518)
                      +||+||.++++++|+.|.+.  +||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++
T Consensus        46 ~Ty~el~~~~~~lA~~L~~~--~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~  123 (539)
T PRK06334         46 LSYNQVRKAVIALATKVSKY--PDQHIGIMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQ  123 (539)
T ss_pred             ccHHHHHHHHHHHHHHHhhc--cCCeEEEEcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHH
Confidence            69999999999999999884  9999999999999999999999999999999999999999999999999999999875


Q ss_pred             hhccCCCCcchhhhhcc---CCCceeeccccccCCCCCCcccccchhhhhccCC--CCCCC---CCCCCCCCCCCCEEEE
Q 010114           81 ILRGGRKFPLYSKVLGA---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD--YHPRP---NYYSPVYNPVDAVVNI  152 (518)
Q Consensus        81 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~i  152 (518)
                      ...      .+......   .....+.+....         ....+.+......  ..+..   .........+++++++
T Consensus       124 ~~~------~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i  188 (539)
T PRK06334        124 LMQ------HLAQTHGEDAEYPFSLIYMEEVR---------KELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVI  188 (539)
T ss_pred             HHH------HHhhhhhccccccccEEEEehhh---------hhccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEE
Confidence            432      11111110   011111111000         0001111100000  00000   0011123456899999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKF  231 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~  231 (518)
                      +|||||||.||+|.++|.++..+.......+++.++|++++.+|++|.+++.. ++.++..|+++++.+...++..+++.
T Consensus       189 ~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~  268 (539)
T PRK06334        189 LFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEM  268 (539)
T ss_pred             EECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHH
Confidence            99999999999999999999988776666778889999999999999999865 78899999999887656778999999


Q ss_pred             HHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC
Q 010114          232 VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ  311 (518)
Q Consensus       232 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~  311 (518)
                      |+++++|++.++|++++.|++.......++++||.+++||+++++++.+++.+.+++..+++.||+||++..+.......
T Consensus       269 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  348 (539)
T PRK06334        269 IDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNS  348 (539)
T ss_pred             HHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCC
Confidence            99999999999999999998876556677899999999999999999999998887788999999999987665544433


Q ss_pred             CcccCCCCcccccccEEEECC-CCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEE
Q 010114          312 PQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK  389 (518)
Q Consensus       312 ~~~~~~~g~~~~~~~~~i~~~-~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~  389 (518)
                      ....+++|.|+++++++|+|+ ++.+++.|+  .|||++ ++.++.+|..  +++ ...+.    ..++++||+|||+|+
T Consensus       349 ~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~--~Gel~v~g~~~~~GY~~--~~~-~~~~~----~~~~~~w~~TGD~g~  419 (539)
T PRK06334        349 PKHESCVGMPIRGMDVLIVSEETKVPVSSGE--TGLVLTRGTSLFSGYLG--EDF-GQGFV----ELGGETWYVTGDLGY  419 (539)
T ss_pred             CCCCCcCceecCCCEEEEEcCCCCccCCCCc--eEEEEEecCcccccccC--Ccc-cccce----eeCCceeEECCCEEE
Confidence            344568999999999999994 688999998  699999 7776665322  222 11111    124678999999999


Q ss_pred             EecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccce------eeEEEeCCCCCCccEEEEEEEecCCCCCChhH
Q 010114          390 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE------TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK  463 (518)
Q Consensus       390 ~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~------~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~  463 (518)
                      +|++|++++.||.+|+||++|++|+|.+||++|. +||+|.+      ++|++.+++.   ..++++++..    .+.++
T Consensus       420 ~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~~~v~~~~~~~~~~v~~~~~~~---~~~~~~~~~~----~~~~~  491 (539)
T PRK06334        420 VDRHGELFLKGRLSRFVKIGAEMVSLEALESILM-EGFGQNAADHAGPLVVCGLPGEK---VRLCLFTTFP----TSISE  491 (539)
T ss_pred             ECCCCeEEEEeccCCeEEECCEEECHHHHHHHHH-HccCCccccccCceEEEcCCCCc---eEEEEEEecc----CChHH
Confidence            9999999999999999999999999999999998 9999988      6777766421   3455555432    23445


Q ss_pred             HHHHHHHHHHhc-cCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          464 LKMIFSKAIQSK-LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       464 l~~~~~~~~~~~-l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      +.++    +.++ ++.|++|..+.++++||+|++||++|+.|+++++...
T Consensus       492 ~~~~----l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  537 (539)
T PRK06334        492 VNDI----LKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKSLF  537 (539)
T ss_pred             HHHH----HHhcCCcccccchheeeecccccccCCcccHHHHHHHHHHhh
Confidence            5444    5454 7889999999999999999999999999999876543

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.6e-66  Score=544.00  Aligned_cols=496  Identities=23%  Similarity=0.324  Sum_probs=384.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|+++
T Consensus        85 ~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~  164 (629)
T PRK10524         85 YTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSAD  164 (629)
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEcc
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999976


Q ss_pred             hhhccCCCCc---chhhhhccC--CCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           80 FILRGGRKFP---LYSKVLGAA--PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        80 ~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      ..........   .+.+.....  .....+..................+.++......    .........++++++++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~il~  240 (629)
T PRK10524        165 AGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLG----ARVPVEWLESNEPSYILY  240 (629)
T ss_pred             CcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHHHHHhcCCC----CCCCceeeCCCCceEEEe
Confidence            4332222211   122222211  1112222111100000011122345554432211    011112235689999999


Q ss_pred             ccCCCCCCceEEeccchhHHHhh-hccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhHHH
Q 010114          155 SSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFG  229 (518)
Q Consensus       155 TSGtTG~pK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~  229 (518)
                      ||||||.||||+++|.+++.... .....+++.++|++++..|++|.++... ++.++..|+++++.+..   .++..++
T Consensus       241 TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~  320 (629)
T PRK10524        241 TSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWW  320 (629)
T ss_pred             ecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHH
Confidence            99999999999999998755443 2333467889999999999999988754 88999999999988752   3578899


Q ss_pred             HHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeec
Q 010114          230 KFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG  307 (518)
Q Consensus       230 ~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~  307 (518)
                      +.++++++|+++++|++++.+.+...  ....++++||.++++||++++++.+++.+.+ ++++++.||+||++..+...
T Consensus       321 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~  399 (629)
T PRK10524        321 RIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAI  399 (629)
T ss_pred             HHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcC
Confidence            99999999999999999999877542  2345788999999999999999999998776 57899999999998433222


Q ss_pred             CC---CCCcccCCCCcccccccEEEECC-CCCCCCCCCCeeeeeee-cc---cccCCcccccccc-ccceeeeCCCCCCC
Q 010114          308 SL---LQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-FP---LYLGASDRLLNAD-HEEVYFRGMPMYKG  378 (518)
Q Consensus       308 ~~---~~~~~~~~~g~~~~~~~~~i~~~-~g~~~~~~~~~~Gel~v-~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~  378 (518)
                      ..   ......+++|.|+++++++|+|+ +|++++.|+  .|||++ ++   +++.++.  .+.. ..+.++..    .+
T Consensus       400 ~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~--~Gel~i~gp~~~~~~~~~~--~~~~~~~~~~~~~----~~  471 (629)
T PRK10524        400 ARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNE--KGVLVIEGPLPPGCMQTVW--GDDDRFVKTYWSL----FG  471 (629)
T ss_pred             CCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCC--cEEEEEcCCCChhhcCCcc--CChHHHHHhhhcc----CC
Confidence            21   12345678999999999999998 999999998  699999 54   2333221  1111 11112211    14


Q ss_pred             ceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCC
Q 010114          379 MCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT  458 (518)
Q Consensus       379 ~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~  458 (518)
                      ++||+|||+|++|+||++++.||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+++|++++++..
T Consensus       472 ~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~d~~~g-~~~~~~vv~~~~~~  549 (629)
T PRK10524        472 RQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESIS-SHPAVAEVAVVGVKDALKG-QVAVAFVVPKDSDS  549 (629)
T ss_pred             CcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHH-hCCCcceEEEEccccCCCC-eEEEEEEEECCCCc
Confidence            579999999999999999999999999999999999999999997 9999999999999998888 89999999887543


Q ss_pred             CC----hhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          459 SQ----PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       459 ~~----~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      .+    .+++.+.++++++++|++++.|..|+++++||+|++||++|+.|++++..+
T Consensus       550 ~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  606 (629)
T PRK10524        550 LADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGR  606 (629)
T ss_pred             cccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence            22    346777888889999999999999999999999999999999999987644

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.7e-66  Score=536.27  Aligned_cols=479  Identities=23%  Similarity=0.324  Sum_probs=391.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++.++++++.++++.++++.+|+++
T Consensus        74 ~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~  153 (570)
T PRK04319         74 YTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTP  153 (570)
T ss_pred             ecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEECh
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ........     .  .......+++.....    ....+...+.+++.....     ........++++++++||||||
T Consensus       154 ~~~~~~~~-----~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTT  217 (570)
T PRK04319        154 ALLERKPA-----D--DLPSLKHVLLVGEDV----EEGPGTLDFNALMEQASD-----EFDIEWTDREDGAILHYTSGST  217 (570)
T ss_pred             hhhhccch-----h--cCCCceEEEEECCCc----CCCcCccCHHHHHhhcCC-----cCCccccCCCCCEEEEeCCCCC
Confidence            54321110     0  000111111111100    011233455555543221     1122233568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      |.||+|+++|.+++.+.......+++.++|++++..|+.|.+|... ++.++..|+++++.+...++..+++.++++++|
T Consensus       218 G~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t  297 (570)
T PRK04319        218 GKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVT  297 (570)
T ss_pred             CCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCe
Confidence            9999999999999988777667778899999999999999998755 889999999999987778899999999999999


Q ss_pred             EEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccC
Q 010114          239 VLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG  316 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~  316 (518)
                      +++++|++++.|.+...  ....+++++|.++++|+++++++.+++.+.+ +.++++.||+||++..+...........+
T Consensus       298 ~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~  376 (570)
T PRK04319        298 VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPAMDIKPG  376 (570)
T ss_pred             EEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCCCCCCCC
Confidence            99999999999987643  2345688999999999999999999988766 57899999999998765443333344567


Q ss_pred             CCCcccccccEEEECCCCCCCCCCCCeeeeeee-c--ccccCCccccccccccceeeeCCCCCCCceeccccceEEEecC
Q 010114          317 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  393 (518)
Q Consensus       317 ~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  393 (518)
                      ++|.|+++++++|+|+++.+++.|+  .|||++ +  +.++.+|  +.++..+...+.       ++||+|||+++++++
T Consensus       377 ~~G~p~~g~~~~i~d~~~~~~~~g~--~Gel~i~~~~~~~~~GY--~~~~~~~~~~~~-------~gw~~TGDl~~~~~~  445 (570)
T PRK04319        377 SMGKPLPGIEAAIVDDQGNELPPNR--MGNLAIKKGWPSMMRGI--WNNPEKYESYFA-------GDWYVSGDSAYMDED  445 (570)
T ss_pred             cCcCCCCCCEEEEECCCCCCCCCCC--ceEEEEcCCCChHHhHh--cCCHHHhhhhhc-------CCceEeCcEEEECCC
Confidence            8999999999999999999999998  699999 3  4444332  222222232221       469999999999999


Q ss_pred             ceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHH
Q 010114          394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  473 (518)
Q Consensus       394 g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  473 (518)
                      |++++.||.+|+|+.+|++|+|.+||+++. +||.|.+++|++.+++..| +.+.+++++.++... .+++.+.++++++
T Consensus       446 g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~-~~~~V~~~~v~g~~~~~~g-~~~~a~v~~~~~~~~-~~~~~~~l~~~~~  522 (570)
T PRK04319        446 GYFWFQGRVDDVIKTSGERVGPFEVESKLM-EHPAVAEAGVIGKPDPVRG-EIIKAFVALRPGYEP-SEELKEEIRGFVK  522 (570)
T ss_pred             eeEEEEecCCCEEEECCEEECHHHHHHHHh-hCCCeeecceecccCcCCc-eEEEEEEEECCCCCC-CHHHHHHHHHHHH
Confidence            999999999999999999999999999998 9999999999999998888 999999998875432 3466677888899


Q ss_pred             hccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          474 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       474 ~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      ++|+.|++|..|+++++||+|++||++|++|++++.+
T Consensus       523 ~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~  559 (570)
T PRK04319        523 KGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELG  559 (570)
T ss_pred             HhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhC
Confidence            9999999999999999999999999999999999754

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=6.6e-65  Score=528.58  Aligned_cols=479  Identities=20%  Similarity=0.232  Sum_probs=381.1

Q ss_pred             CCHHHHHHHHHHHHHHHhh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~-~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|+.|++ . +++||+|+++++|++++++++|||+++|++++|++|..+..++.++++.+++++++++
T Consensus        67 ~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~  146 (560)
T PLN02574         67 ISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTS  146 (560)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEEC
Confidence            6999999999999999999 7 9999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ++....         +.. .....+.+..... .. ........+.+++.....     ........++++++++|||||
T Consensus       147 ~~~~~~---------~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGT  209 (560)
T PLN02574        147 PENVEK---------LSP-LGVPVIGVPENYD-FD-SKRIEFPKFYELIKEDFD-----FVPKPVIKQDDVAAIMYSSGT  209 (560)
T ss_pred             HHHHHH---------HHh-cCCcEEecCcccc-cc-cCccCcccHHHHhhcCCc-----ccccCCCCcCCEEEEEcCCCc
Confidence            754311         111 1111111110000 00 000112234444433221     111222356899999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccc----cccC-CCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHH
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWA----HIDL-KVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFV  232 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~----~~~~-~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i  232 (518)
                      ||.||+|.++|.++..++.....    .... ...++++..+|++|.+++.. ++.++..|+++++.+ ..++..+++.|
T Consensus       210 TG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i  288 (560)
T PLN02574        210 TGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMR-RFDASDMVKVI  288 (560)
T ss_pred             cCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEec-CCCHHHHHHHH
Confidence            99999999999999887654332    1222 35678899999999999866 677888999998876 56789999999


Q ss_pred             HHcCccEEEechHHHHHHHhcccC-CCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCC-C
Q 010114          233 QDAGVTVLGTVPSLVKAWRNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-L  310 (518)
Q Consensus       233 ~~~~~t~l~~~P~~~~~l~~~~~~-~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~-~  310 (518)
                      +++++|.+.++|+++..|++.... ...+++++|.++++|+++++++.+++.+.+++.++++.||+||++.+...... .
T Consensus       289 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  368 (560)
T PLN02574        289 DRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTE  368 (560)
T ss_pred             HHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCcc
Confidence            999999999999999999887543 34568899999999999999999999888877899999999999865442222 1


Q ss_pred             CCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114          311 QPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII  388 (518)
Q Consensus       311 ~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~  388 (518)
                      .....+++|.|.++++++|+| ++|.+++.|+  .|||++ ++..+.+|  +.+...+...+      ..++||+|||+|
T Consensus       369 ~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~--~Gei~v~g~~~~~GY--~~~~~~t~~~~------~~~g~~~TGDlg  438 (560)
T PLN02574        369 KLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGN--CGELWIQGPGVMKGY--LNNPKATQSTI------DKDGWLRTGDIA  438 (560)
T ss_pred             ccCCCCceeeeCCCcEEEEEeCCCCcCCCCCC--CeEEEEECcchhhhh--cCChhHhhhhc------cCCCCcccceEE
Confidence            224567899999999999999 7899999998  699999 77666553  22333322222      246799999999


Q ss_pred             EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114          389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF  468 (518)
Q Consensus       389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~  468 (518)
                      ++|+||++++.||.+|+||++|++|+|.+||++|. .||+|.+++|++.+++..| +.++++|+.+++...+.+++.++ 
T Consensus       439 ~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~V~~~~v~~~~~~~~g-~~~~a~v~~~~~~~~~~~~l~~~-  515 (560)
T PLN02574        439 YFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLI-SHPEIIDAAVTAVPDKECG-EIPVAFVVRRQGSTLSQEAVINY-  515 (560)
T ss_pred             EEECCCeEEEEecchhheEECCEEECHHHHHHHHH-hCCCcceEEEEccccCCCC-cceEEEEEeCCCCCCCHHHHHHH-
Confidence            99999999999999999999999999999999998 9999999999999988877 88999998876655555555544 


Q ss_pred             HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                         ++++|++|+.|..++++++||+|.+||++|+.|++++.+...
T Consensus       516 ---~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~~  557 (560)
T PLN02574        516 ---VAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSVS  557 (560)
T ss_pred             ---HHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhccc
Confidence               667899999999999999999999999999999999976543

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=4.6e-65  Score=530.06  Aligned_cols=486  Identities=17%  Similarity=0.128  Sum_probs=373.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++
T Consensus        33 ~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~  112 (563)
T PLN02860         33 RTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDE  112 (563)
T ss_pred             eeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEec
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhh-ccCCC-ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114           80 FILRGGRKFPLYSKVL-GAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      ...      ....... ..... ...+....................++......    .........++++++++||||
T Consensus       113 ~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSG  182 (563)
T PLN02860        113 TCS------SWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG----TTELDYAWAPDDAVLICFTSG  182 (563)
T ss_pred             ccc------hHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccc----cccccCCCCCCCeEEEEecCC
Confidence            421      1111111 01111 11111110000000000001111111111000    000111235689999999999


Q ss_pred             CCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          158 TTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |||.||+|.++|.+++.+.......+++.++|+++...|++|.+++..++.++..|+++++.+ .+++..+++.|+++++
T Consensus       183 TTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~v  261 (563)
T PLN02860        183 TTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLP-KFDAKAALQAIKQHNV  261 (563)
T ss_pred             CCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecC-CCCHHHHHHHHHHhCC
Confidence            999999999999999887766666678899999999999999999988889999999998876 5788999999999999


Q ss_pred             cEEEechHHHHHHHhcccC--CCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC----
Q 010114          238 TVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----  311 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----  311 (518)
                      |++.++|+++..|++....  ....++++|.+++||+++++++.+.+.+.+++.++++.||+||+++.+.......    
T Consensus       262 t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~  341 (563)
T PLN02860        262 TSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLE  341 (563)
T ss_pred             eeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccc
Confidence            9999999999999876432  2245789999999999999999999998887889999999999876443222111    


Q ss_pred             ------------------CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeC
Q 010114          312 ------------------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG  372 (518)
Q Consensus       312 ------------------~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~  372 (518)
                                        .....++|.|+++++++|++++     .|+  .|||++ ++..+.+|.  .++..+...+  
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----~g~--~Gel~v~g~~~~~GY~--~~~~~t~~~~--  410 (563)
T PLN02860        342 SPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE-----SSR--VGRILTRGPHVMLGYW--GQNSETASVL--  410 (563)
T ss_pred             cchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC-----CCc--eeEEEEecCccccccc--CCccccchhc--
Confidence                              1112368999999999999875     455  699999 776665532  2222222222  


Q ss_pred             CCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEE
Q 010114          373 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV  452 (518)
Q Consensus       373 ~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~  452 (518)
                          ..++||+|||+|++|+||++++.||.+|+||++|++|+|.+||+++. .||+|.+++|++.+++..+ +.++++|+
T Consensus       411 ----~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~~~v~~~~~~~~~-~~~~a~v~  484 (563)
T PLN02860        411 ----SNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLS-QHPGVASVVVVGVPDSRLT-EMVVACVR  484 (563)
T ss_pred             ----cCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHH-hCCCcceeEEEEEecCcCC-ceEEEEEE
Confidence                34679999999999999999999999999999999999999999997 9999999999999998888 89999999


Q ss_pred             ecCCCCC----------ChhHHHHHHHHHHHh-ccCCccccceEEEe-cCCCCCCCchhHHHHHHHHHhccccc
Q 010114          453 LKKGFTS----------QPDKLKMIFSKAIQS-KLNPLFKVSLVKVV-PEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       453 ~~~~~~~----------~~~~l~~~~~~~~~~-~l~~~~~p~~i~~v-~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      ++++...          ......+.+++++.+ +|++|++|..++++ +.||+|++||++|++|++++.+++..
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~~~~~  558 (563)
T PLN02860        485 LRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHLQS  558 (563)
T ss_pred             ECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHHHHHhc
Confidence            8865210          011122345555665 69999999888765 67999999999999999999887654

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5e-65  Score=542.63  Aligned_cols=456  Identities=19%  Similarity=0.219  Sum_probs=374.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|+++++++++||+++|++++|++|.++..++.++++.++++++|+++
T Consensus        31 ~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~  110 (705)
T PRK06060         31 VTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSD  110 (705)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEch
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...+....          .    .+.                ...+++..... ..+.  ......++++++++||||||
T Consensus       111 ~~~~~~~~----------~----~~~----------------~~~~~~~~~~~-~~~~--~~~~~~~~~~a~il~TSGST  157 (705)
T PRK06060        111 ALRDRFQP----------S----RVA----------------EAAELMSEAAR-VAPG--GYEPMGGDALAYATYTSGTT  157 (705)
T ss_pred             HHhhhhcc----------c----ccc----------------hhhhhhhhccc-cCCC--CCCCCCCCCeEEEEECCCCC
Confidence            53211000          0    000                00011110000 0000  01123458899999999999


Q ss_pred             CCCceEEeccchhHHHhhhcc-ccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~-~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |.||||.++|.++..++.... ..+++.++|++++..|++|.+++.. ++.++..|+++++.+...++..+...++++++
T Consensus       158 G~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~  237 (705)
T PRK06060        158 GPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGP  237 (705)
T ss_pred             CCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCC
Confidence            999999999999988765443 3567889999999999999998854 78899999999998766677888899999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      |+++++|+++..+++...  ..+++++|.+++|||++++++.+++.+.+++.++++.||+||++..+..+.. .....++
T Consensus       238 t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~  314 (705)
T PRK06060        238 SVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRV-DEWRLGT  314 (705)
T ss_pred             eEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccC-CCCCcCc
Confidence            999999999999987542  3457899999999999999999999888877899999999999865543332 2334678


Q ss_pred             CCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114          318 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  396 (518)
Q Consensus       318 ~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  396 (518)
                      +|+|+++++++|+|++|.+++.|+  .|||++ ++....+|.   +...        ....+++||+|||+|++++||++
T Consensus       315 iG~p~~~~~v~i~d~~g~~~~~g~--~GEl~i~g~~v~~GY~---~~~~--------~~~~~~~~~~TGDl~~~~~dG~l  381 (705)
T PRK06060        315 LGRVLPPYEIRVVAPDGTTAGPGV--EGDLWVRGPAIAKGYW---NRPD--------SPVANEGWLDTRDRVCIDSDGWV  381 (705)
T ss_pred             ccccCCCcEEEEECCCCCCCCCCC--ceEEEEccchhhhhhh---CCCc--------ccccCCCcEECCeeEEECCCceE
Confidence            999999999999999999999998  699999 666655432   2111        11235689999999999999999


Q ss_pred             EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      ++.||.+|+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.+.+|++..++...+. +..+.+++++.++|
T Consensus       382 ~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~~~~-~~~~~i~~~l~~~L  458 (705)
T PRK06060        382 TYRCRADDTEVIGGVNVDPREVERLII-EDEAVAEAAVVAVRESTGA-STLQAFLVATSGATIDG-SVMRDLHRGLLNRL  458 (705)
T ss_pred             EEecccCceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeecCccCC-eeEEEEEEeccccCcCh-HHHHHHHHHHHHhC
Confidence            999999999999999999999999998 8999999999999988777 88999999876544443 33345666788899


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHHHH
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI  508 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~  508 (518)
                      +.|++|..|+++++||+|.+||++|++|++.+
T Consensus       459 ~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~  490 (705)
T PRK06060        459 SAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS  490 (705)
T ss_pred             CCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence            99999999999999999999999999999875

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=5.5e-64  Score=520.79  Aligned_cols=481  Identities=20%  Similarity=0.245  Sum_probs=386.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++++|+++
T Consensus        56 ~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~  135 (547)
T PRK13295         56 FTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPK  135 (547)
T ss_pred             eeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEec
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCC-ceeeccccccCCCCCCcccccchhhhhccCCCCC---CCCCCCCCCCCCCCEEEEEec
Q 010114           80 FILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP---RPNYYSPVYNPVDAVVNILFS  155 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~T  155 (518)
                      .... .+.......+...... ..++....         ....++.+++.......   .+..........+++++++||
T Consensus       136 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T  205 (547)
T PRK13295        136 TFRG-FDHAAMARRLRPELPALRHVVVVGG---------DGADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYT  205 (547)
T ss_pred             cccC-cchHHHHHHHhhhCCCcceEEEecC---------CCccCHHHHhhCCccccccccccccccCCCCCcceeEEEeC
Confidence            5310 0000111111111111 11111110         01123444332211100   011111223456899999999


Q ss_pred             cCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114          156 SGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQD  234 (518)
Q Consensus       156 SGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~  234 (518)
                      |||||.||+|.++|.+++.++......+++.+++++++..|++|..++.. ++.++..|+++++.+ ..++..+++.+++
T Consensus       206 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~  284 (547)
T PRK13295        206 SGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQD-IWDPARAAELIRT  284 (547)
T ss_pred             CCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCC-CCCHHHHHHHHHH
Confidence            99999999999999999988887777788899999999999999998765 889999999998876 5678999999999


Q ss_pred             cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-Cc
Q 010114          235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQ  313 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~  313 (518)
                      +++|.+.++|.++..+.........+++++|.++++|+++++++.+++.+.+ +.++++.||+||++...+.+.... ..
T Consensus       285 ~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~  363 (547)
T PRK13295        285 EGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDPDER  363 (547)
T ss_pred             cCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCcchh
Confidence            9999999999999999887766667789999999999999999999998777 788999999999987655443322 22


Q ss_pred             ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      ...++|.|+++++++|+|+++.+++.|+  .|||++ ++..+.+|.  .++..+..        ..++||+|||+|++++
T Consensus       364 ~~~~~G~~~~~~~v~i~d~~~~~~~~g~--~Gel~v~g~~~~~gY~--~~~~~t~~--------~~~g~~~TGD~~~~~~  431 (547)
T PRK13295        364 ASTTDGCPLPGVEVRVVDADGAPLPAGQ--IGRLQVRGCSNFGGYL--KRPQLNGT--------DADGWFDTGDLARIDA  431 (547)
T ss_pred             ccCccccccCCcEEEEECCCCCCCCCCC--CCeEEEEcCccccccc--CCcccccc--------CCCCCeecceEEEEcC
Confidence            3468899999999999999999999998  699999 666655432  12222111        1356999999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      +|++++.||.+|+++++|.+|+|.+||++|. ++++|.+++|++.+++..| +.+++++++.++...+.+++.+.    +
T Consensus       432 ~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~  505 (547)
T PRK13295        432 DGYIRISGRSKDVIIRGGENIPVVEIEALLY-RHPAIAQVAIVAYPDERLG-ERACAFVVPRPGQSLDFEEMVEF----L  505 (547)
T ss_pred             CceEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeecCCCC-cEEEEEEEeCCCCCCCHHHHHHH----H
Confidence            9999999999999999999999999999997 8999999999999988888 89999999887654455555555    4


Q ss_pred             H-hccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          473 Q-SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       473 ~-~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      . .+++++++|..++++++||+|.+||++|++|+++++++
T Consensus       506 ~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~~  545 (547)
T PRK13295        506 KAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRGE  545 (547)
T ss_pred             HhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhcC
Confidence            4 37999999999999999999999999999999988753

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1e-64  Score=535.00  Aligned_cols=485  Identities=17%  Similarity=0.141  Sum_probs=372.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++||+++++||+++|++++|+++.++++++.+++++++++++|+++
T Consensus        79 lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~  158 (651)
T PLN02736         79 MTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVP  158 (651)
T ss_pred             EEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECH
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCC-----CCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI-----PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      +..+      .+.......+....++.........     .......++.+++......+    .......++++++++|
T Consensus       159 ~~~~------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dd~a~Ily  228 (651)
T PLN02736        159 QTLN------TLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSP----QPFRPPKPEDVATICY  228 (651)
T ss_pred             HHHH------HHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCC----CCCCCCCccceEEEEE
Confidence            5431      2222222222212222111100000     00112345666655432211    1112235789999999


Q ss_pred             ccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114          155 SSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD  234 (518)
Q Consensus       155 TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~  234 (518)
                      ||||||.||||++||++++.++......+++.++|++++.+|++|.+++..++.+++.|+++++.+.  ++..+++.|++
T Consensus       229 TSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~--~~~~~~~~i~~  306 (651)
T PLN02736        229 TSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQG--DNLKLMDDLAA  306 (651)
T ss_pred             cCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHH
Confidence            9999999999999999999988877777888999999999999999999888889999999988763  56789999999


Q ss_pred             cCccEEEechHHHHHHHhccc----------------------------CCC-------------CCc-cchhhhhccCC
Q 010114          235 AGVTVLGTVPSLVKAWRNTNC----------------------------LEG-------------LDW-TKIRSFASTGE  272 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~----------------------------~~~-------------~~l-~~lr~i~~~Ge  272 (518)
                      +++|+++++|.+++.+.+...                            ...             ..+ +++|.+++||+
T Consensus       307 ~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa  386 (651)
T PLN02736        307 LRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGAS  386 (651)
T ss_pred             hCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCC
Confidence            999999999999988765310                            000             001 47999999999


Q ss_pred             CCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEECC-CCCC---CCCCCCeeeeee
Q 010114          273 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVP---YPDDQPCVGEVG  348 (518)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~-~g~~---~~~~~~~~Gel~  348 (518)
                      ++++++.+++.+.+ +++++++||+||+++.+..... .....+++|.|+|+++++|+|. ++..   ...+.  .|||+
T Consensus       387 ~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~--~GEl~  462 (651)
T PLN02736        387 PLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMDE-GDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYP--RGEIC  462 (651)
T ss_pred             CCCHHHHHHHHHHh-CCCeEEEechHHhchheeccCC-CCCCCCccCCccCceEEEEEEccccCcccCCCCCC--CceEE
Confidence            99999999988766 5789999999999865544333 3345689999999999999983 3221   12222  49999


Q ss_pred             e-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeee-CceecchhHHHHHHhhcC
Q 010114          349 L-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQAD  426 (518)
Q Consensus       349 v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~  426 (518)
                      + ++.++.+|+  .+++.+...+      ..+|||+|||+|++|+||+|+++||.+|+||+ +|++|+|.+||++|. .|
T Consensus       463 vrgp~v~~GY~--~~~~~t~~~~------~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~-~~  533 (651)
T PLN02736        463 VRGPIIFKGYY--KDEVQTREVI------DEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYA-KC  533 (651)
T ss_pred             ecCCccccccc--cCHHHHHhhh------ccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHh-cC
Confidence            9 888777642  2333333332      34689999999999999999999999999997 799999999999997 99


Q ss_pred             cccceeeEEEeCCCCCCccEEEEEEEecCCC--------CCChhH---------HHHHHHHHHH-----hccCCccccce
Q 010114          427 ESILETAAISVSPAGGGPEVLVIFVVLKKGF--------TSQPDK---------LKMIFSKAIQ-----SKLNPLFKVSL  484 (518)
Q Consensus       427 ~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~--------~~~~~~---------l~~~~~~~~~-----~~l~~~~~p~~  484 (518)
                      |.|.+++|++.   ..+ +.++|+|++.++.        ..+.++         +.+.+.+.++     ++|+.|.+|..
T Consensus       534 p~V~~a~V~g~---~~~-~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  609 (651)
T PLN02736        534 KFVAQCFVYGD---SLN-SSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKA  609 (651)
T ss_pred             CCeeEEEEEec---CCC-ceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeE
Confidence            99999999983   234 7899999987531        112122         2333333232     36999999999


Q ss_pred             EEEecCCC------CCCCchhHHHHHHHHHhccccc
Q 010114          485 VKVVPEFP------RTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       485 i~~v~~~P------~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      |.++++.|      +|++||++|+.+++.|+++++.
T Consensus       610 ~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~  645 (651)
T PLN02736        610 VTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISD  645 (651)
T ss_pred             EEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHH
Confidence            99999876      6999999999999999988764

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.6e-64  Score=521.61  Aligned_cols=485  Identities=22%  Similarity=0.245  Sum_probs=382.0

Q ss_pred             CCHHHHHHHHHHHHHHHhh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~-~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|++|.+ . +++||+|+++++|++++++++|||+++|++++|+++..+.+++.+++++++++++|++
T Consensus        50 ~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~  129 (562)
T PRK05677         50 LTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCL  129 (562)
T ss_pred             eeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEe
Confidence            6999999999999999987 5 9999999999999999999999999999999999999999999999999999999997


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccCCC-------------------CCCcccccchhhhhccCCCCCCCCCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG-------------------IPLREQDLSWKDFLSSVDYHPRPNYY  139 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (518)
                      +...      ..+.+.........+++.......+                   .........+.+.+.....    ...
T Consensus       130 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  199 (562)
T PRK05677        130 ANMA------HLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAG----QPV  199 (562)
T ss_pred             cchh------hhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCCcccccHHHHHhcCCC----CCC
Confidence            6432      1122222111111111111000000                   0000112334443332221    111


Q ss_pred             CCCCCCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcccccc--CC-CCcEEEeecCchhhhhhHH-HHHhhhcCcE
Q 010114          140 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LK-VGDVYCWPTNLGWVMGPVI-LFSSFLNGAT  215 (518)
Q Consensus       140 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~--~~-~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~  215 (518)
                      ......++++++++|||||||.||+|+++|.++..+.......+.  +. ..+.+++.+|++|.+++.. ++.++..|++
T Consensus       200 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~  279 (562)
T PRK05677        200 TEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNH  279 (562)
T ss_pred             CCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCe
Confidence            122345689999999999999999999999999876654433332  33 3467899999999999865 7778888998


Q ss_pred             EEEecCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccc
Q 010114          216 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC  295 (518)
Q Consensus       216 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~y  295 (518)
                      .++.+...++..+++.|+++++|.++++|+++..+++.......+++++|.+++||+++++++.+.+.+.+ ++++++.|
T Consensus       280 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~Y  358 (562)
T PRK05677        280 NILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAERWKEVT-GCAICEGY  358 (562)
T ss_pred             EEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCHHHHHHHHHHc-CCCeeccC
Confidence            88777666788999999999999999999999999876654556678999999999999999999888765 68899999


Q ss_pred             cccccceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCC
Q 010114          296 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMP  374 (518)
Q Consensus       296 g~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~  374 (518)
                      |+||+++++..... .....+++|.|++++.++|+|+++.+++.|+  .|||++ ++....+|  +.++..+...+    
T Consensus       359 G~tE~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~--~Gel~v~g~~~~~gY--~~~~~~t~~~~----  429 (562)
T PRK05677        359 GMTETSPVVSVNPS-QAIQVGTIGIPVPSTLCKVIDDDGNELPLGE--VGELCVKGPQVMKGY--WQRPEATDEIL----  429 (562)
T ss_pred             CccccCcceeecCc-cCCCCCccCccCCCCEEEEECCCCCCCCCCC--CeEEEEecCccchhh--cCCchhhhhcc----
Confidence            99999876554433 2335678999999999999999999999998  599999 66655543  23333333333    


Q ss_pred             CCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEec
Q 010114          375 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK  454 (518)
Q Consensus       375 ~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~  454 (518)
                        ..++||+|||+|++|++|++++.||.+|+++++|.+|+|.+||++|. .+|+|.+++|++.+++..| +.+.++++++
T Consensus       430 --~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~-~~~~v~~~~v~g~~~~~~g-~~~~~~v~~~  505 (562)
T PRK05677        430 --DSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLA-ALPGVLQCAAIGVPDEKSG-EAIKVFVVVK  505 (562)
T ss_pred             --CCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCccCC-ceEEEEEEeC
Confidence              24579999999999999999999999999999999999999999997 9999999999999988877 8888999887


Q ss_pred             CCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          455 KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       455 ~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      ++...+.+++.+.    ++++|++|++|..++++++||+|++||++|++|++++.++..
T Consensus       506 ~~~~~~~~~l~~~----~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~~~  560 (562)
T PRK05677        506 PGETLTKEQVMEH----MRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKAG  560 (562)
T ss_pred             CCCCCCHHHHHHH----HHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHhcc
Confidence            6655566666555    566789999999999999999999999999999998877654

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.3e-65  Score=463.32  Aligned_cols=482  Identities=21%  Similarity=0.259  Sum_probs=407.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||+++++++|..|++. +++||+|.+.++|..+|++.+||++++|+.+|.-=|.....+|......+.++.+|.++
T Consensus        54 ~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~  133 (542)
T COG1021          54 LSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVAR  133 (542)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeech
Confidence            69999999999999999999 99999999999999999999999999999999877888899999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ... ..+..+.....+........++.. +..      .........+....    ....+..+.++++++++..+.|||
T Consensus       134 ~~~-gFd~~~~ar~~~a~~~tlr~v~v~-ge~------~~~~~~~~~~~~~a----~~~~~a~~~~~~~vA~fqLSGGTT  201 (542)
T COG1021         134 QHS-GFDYRPFARELVAKHPTLRHVIVA-GEA------EHPSVLEAALCHPA----GLFTPAPPADAGEVAFFQLSGGTT  201 (542)
T ss_pred             hhc-ccCcHHHHHHHHhhCCcceEEEEc-cCC------CCcchhhhhhhCcc----ccCCcCCCCCCCceEEEEecCCCC
Confidence            642 222333444455555554333332 111      00111222222111    122223345678999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH--HHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |.||.++.+|+....+++...+..+++.++++++.+|..|.+-+.+  .++.+++|+++|+.+ +.++...+.+|+++++
T Consensus       202 GtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~-~psp~~~F~lIerh~V  280 (542)
T COG1021         202 GTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAP-DPSPELCFPLIERHGV  280 (542)
T ss_pred             CCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECC-CCCHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999876  999999999999876 7888999999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      |+.-.+|.+...|++..+.+..+++|||.+-.||.+++++..+++...+ +|.+-+.+||.|.-..++-..+..+.-..+
T Consensus       281 t~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAEGLvnyTRLDDp~E~i~~T  359 (542)
T COG1021         281 TVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEGLVNYTRLDDPPEIIIHT  359 (542)
T ss_pred             ceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhhhhhcccccCCchHheeec
Confidence            9999999999999999999999999999999999999999999998776 799999999999655444333333445677


Q ss_pred             CCccc-ccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCce
Q 010114          318 FSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY  395 (518)
Q Consensus       318 ~g~~~-~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  395 (518)
                      -|+|+ |.-+++|+|++|+++++|+  +|++.. +|..+.+|  |..+..+...|      +.+|+|+|||+++.|+||+
T Consensus       360 QGrPlsP~DEvrvvD~dg~pv~pGE--~G~LltRGPYTirGY--yrap~HNa~aF------~a~GFYrsGD~V~~~~dGy  429 (542)
T COG1021         360 QGRPLSPDDEVRVVDADGNPVAPGE--VGELLTRGPYTIRGY--YRAPEHNARAF------DADGFYRSGDLVRRDPDGY  429 (542)
T ss_pred             CCCcCCCcceeEEecCCCCCCCCCC--cceeeecCCeeeeee--ccCchhhhhcc------CcCCceecCceeEecCCce
Confidence            88888 6789999999999999999  699999 88888775  34555555555      6788999999999999999


Q ss_pred             EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 010114          396 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK  475 (518)
Q Consensus       396 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~  475 (518)
                      +.+.||.+|+|+.+|+||-.+|||+.|. .||.|.++++|..+|+..| |+.++||+.++.. .+..++++++++   ..
T Consensus       430 l~V~GR~KDQINRgGEKIAAeEvEn~LL-~HP~V~~AAlVampDelLG-EksCAfiv~~~~~-~~~~qlr~~L~~---~G  503 (542)
T COG1021         430 LVVEGRVKDQINRGGEKIAAEEVENLLL-RHPAVHDAALVAMPDELLG-EKSCAFIVVKEPP-LRAAQLRRFLRE---RG  503 (542)
T ss_pred             EEEEeeehhhhccccchhhHHHHHHHHh-hCchhhhhhhhcCchhhcC-cceeEEEEecCCC-CCHHHHHHHHHH---cc
Confidence            9999999999999999999999999999 9999999999999999999 9999999998753 667778888755   68


Q ss_pred             cCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          476 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       476 l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      ++.|++|+.|.+++++|.|+-|||+++.|++.+....
T Consensus       504 lAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~~  540 (542)
T COG1021         504 LAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASRL  540 (542)
T ss_pred             hhhhcCCcceeecccCCCcccccccHHHHHHHhhhhc
Confidence            9999999999999999999999999999999887543

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=8.5e-64  Score=518.45  Aligned_cols=474  Identities=21%  Similarity=0.246  Sum_probs=384.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|+++++++++||+++|++++|+++.++..++..+++.++++++|+++
T Consensus        51 ~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~  130 (537)
T PLN02246         51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQS  130 (537)
T ss_pred             eeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ..+...........+.+.  ..      ......+.++......     ........++++++++||||||
T Consensus       131 ~~~------~~~~~~~~~~~~~~i~~~--~~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGtT  191 (537)
T PLN02246        131 CYV------DKLKGLAEDDGVTVVTID--DP------PEGCLHFSELTQADEN-----ELPEVEISPDDVVALPYSSGTT  191 (537)
T ss_pred             chH------HHHHHHhhcCCceEEEeC--CC------CCCceeHHHHhcCCCC-----CCCCCCCCccCEEEEEeCCCCC
Confidence            432      222222111111111111  10      0122334444332211     1122234568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccc----cccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQD  234 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~  234 (518)
                      |.||+|+++|++++.+......    .+.+.++|+++..+|++|.+++.. ++.++..|+++++.+ ..++..+++.+++
T Consensus       192 G~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~  270 (537)
T PLN02246        192 GLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMP-KFEIGALLELIQR  270 (537)
T ss_pred             CCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeC-CCCHHHHHHHHHH
Confidence            9999999999999887654332    466889999999999999999865 778899999999987 4678899999999


Q ss_pred             cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC----
Q 010114          235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----  310 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----  310 (518)
                      +++|++.++|.++..|.+.......+++++|.++++|+++++++.+++.+.+++..+++.||+||++.++..+...    
T Consensus       271 ~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~  350 (537)
T PLN02246        271 HKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEP  350 (537)
T ss_pred             hCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCC
Confidence            9999999999999999887665566788999999999999999999999988788899999999998754433211    


Q ss_pred             CCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114          311 QPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII  388 (518)
Q Consensus       311 ~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~  388 (518)
                      .....+++|.|+++++++|+| +++.+++.|+  .|||++ ++.++.+|+  .+...+...+      ..++||+|||++
T Consensus       351 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~Gel~v~g~~~~~GY~--~~~~~~~~~~------~~~~~~~TGD~~  420 (537)
T PLN02246        351 FPVKSGSCGTVVRNAELKIVDPETGASLPRNQ--PGEICIRGPQIMKGYL--NDPEATANTI------DKDGWLHTGDIG  420 (537)
T ss_pred             ccccCCccccccCCcEEEEecCCCCCcCCCCC--ceEEEEECCchhcccc--CCchhhhhcc------cCCCCeeecceE
Confidence            123457899999999999999 5789999998  599999 776666532  2333222222      345799999999


Q ss_pred             EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114          389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF  468 (518)
Q Consensus       389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~  468 (518)
                      +++++|++++.||.+|+|+.+|.+|+|.+||+.+. .+|+|.+++|++.+++..+ +.++++++..++...+.+++    
T Consensus       421 ~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l----  494 (537)
T PLN02246        421 YIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-SHPSIADAAVVPMKDEVAG-EVPVAFVVRSNGSEITEDEI----  494 (537)
T ss_pred             EEeCCCeEEEEecccceEEECCEEECcHHHHHHHH-hCCCeeEEEEEcccCccCC-ceeEEEEEeCCCCCCCHHHH----
Confidence            99999999999999999999999999999999997 8999999999999888877 88999998876654454444    


Q ss_pred             HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      ++.+++++++++.|..+++++++|+|++||++|++|++++++
T Consensus       495 ~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~  536 (537)
T PLN02246        495 KQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA  536 (537)
T ss_pred             HHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            444677899999999999999999999999999999998753

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.7e-64  Score=519.56  Aligned_cols=464  Identities=19%  Similarity=0.187  Sum_probs=376.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++.++..++.++++.++++++|+++
T Consensus        69 ~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  148 (537)
T PRK13382         69 LTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDE  148 (537)
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEch
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ..+.............+.....       .....+..+......   .   .+ ....++.++++||||||
T Consensus       149 ~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~---~~-~~~~~~~~~il~TSGTT  208 (537)
T PRK13382        149 EFS------ATVDRALADCPQATRIVAWTDE-------DHDLTVEVLIAAHAG---Q---RP-EPTGRKGRVILLTSGTT  208 (537)
T ss_pred             hhH------HHHHHHHhhccccceEEEecCC-------cccccHHHHhhccCc---C---CC-CCCCCCCeEEEECCCCC
Confidence            542      1222221111111111100000       011233333322111   0   01 12357889999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      |.||+|.++|.++..........+.+..+++++...|++|.+++..++.++..|+++++.. .+++..+++.|+++++|.
T Consensus       209 G~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~vt~  287 (537)
T PRK13382        209 GTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRR-RFDPEATLDLIDRHRATG  287 (537)
T ss_pred             CCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECC-CcCHHHHHHHHHHhCCEE
Confidence            9999999999988877776666677888999999999999999977889999999988764 677899999999999999


Q ss_pred             EEechHHHHHHHhcccC--CCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          240 LGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      +.++|++++.+++....  ...+++++|.+++||+++++++.+.+.+.+ +.++++.||+||++.+...+........++
T Consensus       288 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~  366 (537)
T PRK13382        288 LAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGMIATATPADLRAAPDT  366 (537)
T ss_pred             EEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCcceecChhHhccCCCC
Confidence            99999999999876432  234567899999999999999999998877 467999999999987665554433446689


Q ss_pred             CCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114          318 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  396 (518)
Q Consensus       318 ~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  396 (518)
                      +|+|++++.++|+|+++.+++.|+  .|||++ ++.++.+|.    ...+..        ..++||+|||+++++++|++
T Consensus       367 vG~p~~~~~~~i~d~~~~~~~~g~--~GEl~v~g~~~~~gY~----~~~~~~--------~~~g~~~TGDl~~~~~~g~l  432 (537)
T PRK13382        367 AGRPAEGTEIRILDQDFREVPTGE--VGTIFVRNDTQFDGYT----SGSTKD--------FHDGFMASGDVGYLDENGRL  432 (537)
T ss_pred             ccccCcCcEEEEECCCCCCCCCCC--eeEEEEEcCCcccCcc----ccchhh--------ccCCCEeeCceEEEeCCCcE
Confidence            999999999999999999999998  699999 776666542    111111        12469999999999999999


Q ss_pred             EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      ++.||.+|+||.+|.+|+|.+||++|. .+|+|.+++|++.+++..| +.+.++|++.++...+.++    +++.+.++|
T Consensus       433 ~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~~~~a~vv~~~~~~~~~~~----l~~~l~~~l  506 (537)
T PRK13382        433 FVVGRDDEMIVSGGENVYPIEVEKTLA-THPDVAEAAVIGVDDEQYG-QRLAAFVVLKPGASATPET----LKQHVRDNL  506 (537)
T ss_pred             EEeccccceeEECCEEECHHHHHHHHH-hCCCEeeEEEEccCccccC-CEEEEEEEECCCCCCCHHH----HHHHHHHhc
Confidence            999999999999999999999999997 9999999999999988777 8899999987765444444    444577789


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHH
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRD  506 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~  506 (518)
                      ++|++|..+++++++|+|++||++|++|++
T Consensus       507 ~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        507 ANYKVPRDIVVLDELPRGATGKILRRELQA  536 (537)
T ss_pred             cCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence            999999999999999999999999999864

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-63  Score=514.39  Aligned_cols=480  Identities=20%  Similarity=0.204  Sum_probs=380.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||.||.++++++|++|.+. +++||+|+++++|+++++++++||+++|++++|+++.++++++..+++.++++++++++
T Consensus        40 ~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~  119 (539)
T PRK07008         40 YTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDL  119 (539)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcc
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      +..      +....+....... .++........... ..+..++.++......     ........++++++++|||||
T Consensus       120 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~i~~TSGT  187 (539)
T PRK07008        120 TFL------PLVDALAPQCPNVKGWVAMTDAAHLPAG-STPLLCYETLVGAQDG-----DYDWPRFDENQASSLCYTSGT  187 (539)
T ss_pred             hhH------HHHHHHHhhCCCceEEEEEccCCccccC-CcccccHHHHhcccCC-----CcCcccCCcccceEEEECCCC
Confidence            543      1222222111111 11111111111111 1224456665443221     111123456889999999999


Q ss_pred             CCCCceEEeccchhHHHh--hhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114          159 TGEPKAIPWTQLSSIRCT--AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAG  236 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~--~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  236 (518)
                      ||.||+|+++|.+++.+.  ......+++.++|+++...|++|..++...+.++..|+++++.++..++..+++.+++++
T Consensus       188 TG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~  267 (539)
T PRK07008        188 TGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAER  267 (539)
T ss_pred             CCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcC
Confidence            999999999999986432  233345678889999999999998887667788999999999876778899999999999


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-----
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-----  311 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-----  311 (518)
                      +|.+.++|+++..+++.......+++++|.++++|+++++++.+++.+.+ +.++++.||+||++.....+....     
T Consensus       268 vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~  346 (539)
T PRK07008        268 VTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQL  346 (539)
T ss_pred             CEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccccccccceecccccccccC
Confidence            99999999999999987766667889999999999999999999998776 688999999999986544332110     


Q ss_pred             -----CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceecccc
Q 010114          312 -----PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG  385 (518)
Q Consensus       312 -----~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG  385 (518)
                           .....++|.|++++.++|+|+++.+++.+....|||++ ++....+|.  .+..        .+.  .++||+||
T Consensus       347 ~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~--~~~~--------~~~--~~g~~~TG  414 (539)
T PRK07008        347 PLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYF--RGDA--------SPL--VDGWFPTG  414 (539)
T ss_pred             CchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhc--CChh--------hhh--cCCCcccC
Confidence                 01246789999999999999999988865433699999 655544321  1110        111  14699999


Q ss_pred             ceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHH
Q 010114          386 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK  465 (518)
Q Consensus       386 D~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~  465 (518)
                      |++++|+||++++.||.+|+++.+|.+|+|.+||+++. .+|.|.++++++.+++..+ +.+.++|+..++...+.+++.
T Consensus       415 D~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~  492 (539)
T PRK07008        415 DVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAV-AHPAVAEAACIACAHPKWD-ERPLLVVVKRPGAEVTREELL  492 (539)
T ss_pred             ceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHH-hCCceeEEEEEecCCchhc-cceEEEEEeCCCCccCHHHHH
Confidence            99999999999999999999999999999999999997 8999999999999988777 788888887765555555555


Q ss_pred             HHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          466 MIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       466 ~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      ++    +.+++++|+.|..|++++++|+|++||++|++|++++.+.
T Consensus       493 ~~----~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~  534 (539)
T PRK07008        493 AF----YEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDY  534 (539)
T ss_pred             HH----HHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence            55    6678899999999999999999999999999999988753

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.8e-63  Score=513.42  Aligned_cols=485  Identities=21%  Similarity=0.228  Sum_probs=386.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|+.|.+.  +++||+|+++++|+++++++++||+++|++++|+++.++..++.++++.++++++|++
T Consensus        36 ~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~  115 (546)
T PRK08314         36 ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVG  115 (546)
T ss_pred             ecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEc
Confidence            69999999999999999986  9999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccC----C--------------CCCCcccccchhhhhccCCCCCCCCCCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND----V--------------GIPLREQDLSWKDFLSSVDYHPRPNYYS  140 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (518)
                      ++..      ..+.+.........++.......    .              ......+...+.+.+....      ...
T Consensus       116 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  183 (546)
T PRK08314        116 SELA------PKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL------APP  183 (546)
T ss_pred             cchh------hhHHHHhhccCcceEEEecchhhcccccccCcccccccccccccccccccccHHHHhcccC------CCC
Confidence            7543      12222211111111111100000    0              0000112234444443211      112


Q ss_pred             CCCCCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEe
Q 010114          141 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALY  219 (518)
Q Consensus       141 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~  219 (518)
                      .....++++++++|||||||.||+|.++|.+++.++......+++..+|++++.+|++|.+|+.. ++.++..|+++++.
T Consensus       184 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~  263 (546)
T PRK08314        184 PHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLM  263 (546)
T ss_pred             CCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEec
Confidence            22345689999999999999999999999999998887777778899999999999999999865 88999999999998


Q ss_pred             cCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccc
Q 010114          220 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE  299 (518)
Q Consensus       220 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE  299 (518)
                      + ..++..+++.++++++|++.++|.++..++........+++++|.+++||+++++++.+++.+.+ +.++++.||+||
T Consensus       264 ~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE  341 (546)
T PRK08314        264 P-RWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGLTE  341 (546)
T ss_pred             C-CCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHHHHHHHHc-CCcEEecccccc
Confidence            7 46788999999999999999999999999877655666788999999999999999999998877 578999999999


Q ss_pred             cceeEeecCCCCCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCC
Q 010114          300 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYK  377 (518)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (518)
                      ++......... ....+++|.|+++++++|+| +++.+++.|+  .|||++ ++..+.+|.  .+...+...+..   .+
T Consensus       342 ~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~--~Gel~v~g~~~~~gY~--~~~~~t~~~f~~---~~  413 (546)
T PRK08314        342 TMAQTHSNPPD-RPKLQCLGIPTFGVDARVIDPETLEELPPGE--VGEIVVHGPQVFKGYW--NRPEATAEAFIE---ID  413 (546)
T ss_pred             cccceecCCCc-CCCCCccCcccCCeEEEEEeCCCCcCCCCCC--ceEEEEECCchhcccc--CChhHhhhhhhh---cC
Confidence            98765543322 23457899999999999999 5789999998  699999 666555432  233333322221   24


Q ss_pred             CceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC
Q 010114          378 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF  457 (518)
Q Consensus       378 ~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~  457 (518)
                      +.+||+|||+|+++++|++++.||.+|+++++|.+|+|.+||+++. ++|+|.+++|++.+++..+ +.++++++++++.
T Consensus       414 ~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~-~~~~v~~~~v~~~~~~~~~-~~~~a~v~~~~~~  491 (546)
T PRK08314        414 GKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLY-KHPAIQEACVIATPDPRRG-ETVKAVVVLRPEA  491 (546)
T ss_pred             CCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHH-hCcchheEEEEeCCCcccC-ceeEEEEEECCCC
Confidence            5679999999999999999999999999999999999999999997 8999999999999988777 8899999988753


Q ss_pred             CCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          458 TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       458 ~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      ....  -.+.+++.++++|+++++|..++++++||+|++||++|+.|++..+..
T Consensus       492 ~~~~--~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~~  543 (546)
T PRK08314        492 RGKT--TEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKAR  543 (546)
T ss_pred             CCCC--CHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhhh
Confidence            2211  113445557789999999999999999999999999999998876643

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=8.8e-64  Score=526.37  Aligned_cols=484  Identities=16%  Similarity=0.146  Sum_probs=364.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++||++++|||+++|++++|+++.++++++.+++++++++++|+++
T Consensus        80 ~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~  159 (666)
T PLN02614         80 QTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEE  159 (666)
T ss_pred             eEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECH
Confidence            49999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccC-C-CceeeccccccCCCC-----CCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           80 FILRGGRKFPLYSKVLGAA-P-LKAIVLPAIGNDVGI-----PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      +...      .+....... . ...++... ......     .......++.+++......  .  .......++++++|
T Consensus       160 ~~~~------~~~~~~~~~~~~l~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~d~a~I  228 (666)
T PLN02614        160 KKIS------ELFKTCPNSTEYMKTVVSFG-GVSREQKEEAETFGLVIYAWDEFLKLGEGK--Q--YDLPIKKKSDICTI  228 (666)
T ss_pred             HHHH------HHHHhcccccccceEEEEeC-CCChHHhhhhhhcCcEEEEHHHHHhhcccC--C--CCCCCCCCCceEEE
Confidence            5321      111111110 0 11111111 100000     0001124566665433210  0  11112356899999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhhccccc-----cCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-----DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS  227 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  227 (518)
                      +|||||||.||||++||.+++.++......+     ++.++|++++.+|++|.++....+..++.|+++++.+  .++..
T Consensus       229 ~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~--~~~~~  306 (666)
T PLN02614        229 MYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWR--GDVKL  306 (666)
T ss_pred             EEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeC--CCHHH
Confidence            9999999999999999999988766543332     5678999999999999999876667788999998865  36789


Q ss_pred             HHHHHHHcCccEEEechHHHHHHHhcccC---------------------------------CC-----------CCc-c
Q 010114          228 FGKFVQDAGVTVLGTVPSLVKAWRNTNCL---------------------------------EG-----------LDW-T  262 (518)
Q Consensus       228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---------------------------------~~-----------~~l-~  262 (518)
                      +++.|++++||+++++|.+++.+.+....                                 .+           ..+ +
T Consensus       307 ~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~  386 (666)
T PLN02614        307 LIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGG  386 (666)
T ss_pred             HHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCC
Confidence            99999999999999999999988642100                                 00           001 5


Q ss_pred             chhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEEC-CC--CCCCCC
Q 010114          263 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-EC--GVPYPD  339 (518)
Q Consensus       263 ~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~--g~~~~~  339 (518)
                      ++|.+++||+++++++. .+.+.+++++++++||+||+++..+..........+++|+|+|+++++|+| ++  +.+++.
T Consensus       387 ~lr~~~~Gga~l~~~~~-~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~  465 (666)
T PLN02614        387 NVRIILSGAAPLASHVE-SFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAS  465 (666)
T ss_pred             cEEEEEEcCCCCCHHHH-HHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCC
Confidence            89999999999998764 455566568899999999987654433332223568999999999999997 33  467888


Q ss_pred             CCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeee-CceecchhH
Q 010114          340 DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVE  417 (518)
Q Consensus       340 ~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~~  417 (518)
                      |+  .|||++ ++.++.+|  +.+++.+...+       .+|||+|||+|++|+||+|+|+||.||+||+ +|++|+|.+
T Consensus       466 g~--~GEl~vrGp~v~~GY--~~~pe~T~~~f-------~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~e  534 (666)
T PLN02614        466 TP--RGEICIRGKTLFSGY--YKREDLTKEVL-------IDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVEN  534 (666)
T ss_pred             CC--CceEEEcCCcccccc--cCCHHHhhhhh-------ccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHH
Confidence            88  599999 88777664  33444443333       1479999999999999999999999999996 799999999


Q ss_pred             HHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC----------C------CChhHHHHHHHHHH-----Hhcc
Q 010114          418 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------T------SQPDKLKMIFSKAI-----QSKL  476 (518)
Q Consensus       418 iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~----------~------~~~~~l~~~~~~~~-----~~~l  476 (518)
                      ||++|. +||.|.+++|++....    ..++|+|++..+.          .      .+..++++.+.+.+     +++|
T Consensus       535 IE~~l~-~~p~V~~~~V~g~~~~----~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  609 (666)
T PLN02614        535 IENIYG-EVQAVDSVWVYGNSFE----SFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKM  609 (666)
T ss_pred             HHHHHh-cCCCeeEEEEEecCCc----ceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            999997 9999999999997532    4588888876421          0      01123444444433     4679


Q ss_pred             CCccccceEEEecC-C-----CCCCCchhHHHHHHHHHhccccc
Q 010114          477 NPLFKVSLVKVVPE-F-----PRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       477 ~~~~~p~~i~~v~~-~-----P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      +.|.+++.|.+++. |     -.|+++|+.|..+.+.|+++|+.
T Consensus       610 ~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~  653 (666)
T PLN02614        610 KGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDE  653 (666)
T ss_pred             CCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHH
Confidence            99999999999973 3     38999999999999999988764

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4e-63  Score=515.39  Aligned_cols=480  Identities=16%  Similarity=0.164  Sum_probs=372.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|+++++++++||+++|++++|+++.++.+++..++++++++++|+++
T Consensus        42 ~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~  121 (552)
T PRK09274         42 LSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIP  121 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEecc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999865


Q ss_pred             hhhccCCCCcchhhhhccC-CCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAA-PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ...       ......... ......+.....     .......+.++......    .........++++++++|||||
T Consensus       122 ~~~-------~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGT  185 (552)
T PRK09274        122 KAH-------LARRLFGWGKPSVRRLVTVGGR-----LLWGGTTLATLLRDGAA----APFPMADLAPDDMAAILFTSGS  185 (552)
T ss_pred             HHH-------HHHHHhccCccchhheeccccc-----cccCCccHHHhcccCcc----ccCCCCCCCCCCeEEEEECCCC
Confidence            210       001111000 000001110000     00112234444321111    1112223456899999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC------CCChhHHHHHH
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG------SPLERSFGKFV  232 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~------~~~~~~~~~~i  232 (518)
                      ||.||+|.++|.++...+......+++.++|+.+..+|++|.+++       ..|+++++.+.      ..++..+++.|
T Consensus       186 TG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i  258 (552)
T PRK09274        186 TGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAI  258 (552)
T ss_pred             CCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHH
Confidence            999999999999999888777777888999999999999876543       45888776542      34578999999


Q ss_pred             HHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccc-cCceeccccccccceeEeecCCC-
Q 010114          233 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLL-  310 (518)
Q Consensus       233 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~~~~~-  310 (518)
                      +++++|+++++|+++..|.+.....+.+++++|.+++||+++++++.+++.+.++ ++++++.||+||+++++...... 
T Consensus       259 ~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~  338 (552)
T PRK09274        259 ERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREI  338 (552)
T ss_pred             HHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhh
Confidence            9999999999999999999876656678999999999999999999999998876 37899999999998765433221 


Q ss_pred             --------CCcccCCCCcccccccEEEECC---------CCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeC
Q 010114          311 --------QPQAFGAFSTATMTAGLVILDE---------CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG  372 (518)
Q Consensus       311 --------~~~~~~~~g~~~~~~~~~i~~~---------~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~  372 (518)
                              ......++|+|+++++++|+|+         ++++++.|+  +|||++ ++..+.+|  +.++..+...+..
T Consensus       339 ~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~--~Gel~v~g~~~~~GY--~~~~~~t~~~~~~  414 (552)
T PRK09274        339 LFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGE--IGEIVVAGPMVTRSY--YNRPEATRLAKIP  414 (552)
T ss_pred             hccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCC--eeEEEEecCcccccc--cCChHHhhhhhcc
Confidence                    1112347899999999999984         567888888  699999 77666553  2233222222111


Q ss_pred             CCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEE
Q 010114          373 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV  452 (518)
Q Consensus       373 ~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~  452 (518)
                      +  ..+..||+|||+|++|+||+|+++||.+|+|+++|.+|+|.+||++|. +||+|.+++|++.+++. + +.++++|+
T Consensus       415 ~--~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~~~v~~~~~~~-~-~~~~~~v~  489 (552)
T PRK09274        415 D--GQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFN-THPGVKRSALVGVGVPG-A-QRPVLCVE  489 (552)
T ss_pred             c--CCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHH-hCcccceeEEEEeCCCC-C-ceEEEEEE
Confidence            0  122249999999999999999999999999999999999999999997 99999999999998754 4 68889999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCC--CCchhHHHHHHHHHhcccc
Q 010114          453 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT--ASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       453 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t--~~GKv~R~~l~~~~~~~~~  513 (518)
                      ++++...+.+++.+.+++.+.. .+.++.|..++++++||+|  .+||++|++|++++.+.+.
T Consensus       490 ~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~~~  551 (552)
T PRK09274        490 LEPGVACSKSALYQELRALAAA-HPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQLK  551 (552)
T ss_pred             ccCccccchHHHhhhhHHHHHh-cCCCcceeEEeccCCCCccccccccccHHHHHHHHHHhhc
Confidence            8887666666788888776643 4566788999999999999  7999999999999987654

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.7e-63  Score=506.53  Aligned_cols=457  Identities=21%  Similarity=0.236  Sum_probs=372.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF   80 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~   80 (518)
                      +||.||.++++++|++|.+...+||+|+++++|++++++++|||+++|++++|+++.+++.++.++++.++++.+|+++.
T Consensus        27 ~Ty~~l~~~~~~~a~~L~~~~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~  106 (487)
T PRK07638         27 LTYKDWFESVCKVANWLNEKESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERY  106 (487)
T ss_pred             eeHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecc
Confidence            69999999999999999988448999999999999999999999999999999999999999999999999999999874


Q ss_pred             hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCCC
Q 010114           81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG  160 (518)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  160 (518)
                      ...      .+..    .....+...               .+.+.+.....     ...+.....+++++++|||||||
T Consensus       107 ~~~------~~~~----~~~~~~~~~---------------~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG  156 (487)
T PRK07638        107 KLN------DLPD----EEGRVIEID---------------EWKRMIEKYLP-----TYAPIENVQNAPFYMGFTSGSTG  156 (487)
T ss_pred             ccc------chhh----ccceEEEeh---------------hhhhhhhhccc-----cccccccCCCCcEEEEeCCCCCC
Confidence            321      1110    000000000               11111111110     11111223477899999999999


Q ss_pred             CCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEE
Q 010114          161 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL  240 (518)
Q Consensus       161 ~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l  240 (518)
                      .||+|+++|.+++.++......+++.++|+++...|++|..++..++.+++.|+++++.+ ..++..+++.++++++|++
T Consensus       157 ~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~  235 (487)
T PRK07638        157 KPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMR-KFIPNQVLDKLETENISVM  235 (487)
T ss_pred             CCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcC-CCCHHHHHHHHHHcCCeEE
Confidence            999999999999988887777788899999999999999988877889999999999876 5778999999999999999


Q ss_pred             EechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCc
Q 010114          241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST  320 (518)
Q Consensus       241 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~  320 (518)
                      .++|+++..|.+...   . ..+.+.++++|+.++.+..+++.+.+++.++++.||+||++..+............++|.
T Consensus       236 ~~~P~~~~~l~~~~~---~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  311 (487)
T PRK07638        236 YTVPTMLESLYKENR---V-IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGR  311 (487)
T ss_pred             EeCcHHHHHHHhCcC---c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCc
Confidence            999999999987732   2 345556778899999999999998888889999999999998766555444456789999


Q ss_pred             ccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEe
Q 010114          321 ATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQ  399 (518)
Q Consensus       321 ~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~  399 (518)
                      |++++.++|+|++|.+++.|+  .|||++ ++....+|.  .+...+.       ....++||+|||++++|++|++++.
T Consensus       312 ~~~~~~~~i~d~~g~~~~~g~--~Gel~v~~~~~~~gy~--~~~~~~~-------~~~~~g~~~TGDl~~~d~~g~l~i~  380 (487)
T PRK07638        312 PFHNVQVRICNEAGEEVQKGE--IGTVYVKSPQFFMGYI--IGGVLAR-------ELNADGWMTVRDVGYEDEEGFIYIV  380 (487)
T ss_pred             ccCCcEEEEECCCCCCCCCCC--CeEEEEecccceeeec--CCHHHHh-------hhccCCcEecCccEeEcCCCeEEEE
Confidence            999999999999999999998  699999 665554432  1221111       1234579999999999999999999


Q ss_pred             eccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccCCc
Q 010114          400 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL  479 (518)
Q Consensus       400 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~  479 (518)
                      ||.+|+|+++|.+|+|.+||+++. ++|+|.+++|++.+++..| +.+.++++.    ..+.+++.++    +.++++++
T Consensus       381 GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~----~~~~~~l~~~----~~~~l~~~  450 (487)
T PRK07638        381 GREKNMILFGGINIFPEEIESVLH-EHPAVDEIVVIGVPDSYWG-EKPVAIIKG----SATKQQLKSF----CLQRLSSF  450 (487)
T ss_pred             ecCCCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEecCchhcC-CeeEEEEEC----CCCHHHHHHH----HHHHhhcc
Confidence            999999999999999999999998 8999999999999988878 888888763    2344445554    66788999


Q ss_pred             cccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          480 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       480 ~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      ++|..+++++++|+|++||++|++|++++.+...
T Consensus       451 ~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~  484 (487)
T PRK07638        451 KIPKEWHFVDEIPYTNSGKIARMEAKSWIENQEK  484 (487)
T ss_pred             cCCcEEEEecccCCCCcccccHHHHHHHHhcccc
Confidence            9999999999999999999999999999887653

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-62  Score=508.68  Aligned_cols=476  Identities=25%  Similarity=0.288  Sum_probs=388.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.+.+.++|+.|.+. +++||+|+++++|+++++++++||+++|++++|+++..+..++..+++.++++++++++
T Consensus        31 ~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~  110 (513)
T PRK07656         31 LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLG  110 (513)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEch
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCC-ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ...      ............ ..++........  .......+|.++......     .........+++++++|||||
T Consensus       111 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGt  177 (513)
T PRK07656        111 LFL------GVDYSATTRLPALEHVVICETEEDD--PHTEKMKTFTDFLAAGDP-----AERAPEVDPDDVADILFTSGT  177 (513)
T ss_pred             hhH------HHHHHHHhccCCccEEEEEcCcccc--cCccccccHHHHHhcCCC-----CCCcCCCCCCceEEEEeCCCC
Confidence            533      111111111111 111111111110  011123456666543321     112223466899999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      ||.||+|.++|.++...+......+++.++|++++..|++|.+++.. ++.++..|+++++.+ ..++..+++.++++++
T Consensus       178 TG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~  256 (513)
T PRK07656        178 TGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLP-VFDPDEVFRLIETERI  256 (513)
T ss_pred             CCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecC-cCCHHHHHHHHHHhCC
Confidence            99999999999999988877777788999999999999999999876 889999999998865 5678999999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcc--c
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA--F  315 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~--~  315 (518)
                      |++.++|.++..+.+.......+++++|.++++|+++++++.+.+.+.++...+++.||+||++++...+.......  .
T Consensus       257 t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  336 (513)
T PRK07656        257 TVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVA  336 (513)
T ss_pred             eEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccC
Confidence            99999999999999887766778899999999999999999999988875338999999999987776665543333  6


Q ss_pred             CCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCc
Q 010114          316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG  394 (518)
Q Consensus       316 ~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g  394 (518)
                      +++|.|++++.++|+|+++.+++.|+  .||+++ ++....+|.  .+...+...      ..+++||+|||+|+++++|
T Consensus       337 ~~vG~~~~~~~~~i~d~~~~~~~~g~--~Gel~v~~~~~~~gy~--~~~~~~~~~------~~~~~~~~tGDl~~~~~~g  406 (513)
T PRK07656        337 GTIGTAIAGVENKIVNELGEEVPVGE--VGELLVRGPNVMKGYY--DDPEATAAA------IDADGWLHTGDLGRLDEEG  406 (513)
T ss_pred             CCccccCCCcEEEEECCCCCCCCCCC--ceEEEEEcchhhhhhc--CCHHHHhhh------hccCCceeccceEEEcCCe
Confidence            78999999999999999999999998  599999 665555432  122222211      2346799999999999999


Q ss_pred             eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114          395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS  474 (518)
Q Consensus       395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~  474 (518)
                      .+++.||.+|+++++|.+++|.+||++|. ++++|.+++|++.+++..| +.+.++++.+++...+.+++.+.    +.+
T Consensus       407 ~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~i~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~~~  480 (513)
T PRK07656        407 YLYIVDRKKDMFIVGGFNVYPAEVEEVLY-EHPAVAEAAVIGVPDERLG-EVGKAYVVLKPGAELTEEELIAY----CRE  480 (513)
T ss_pred             eEEEEecccceEEeCCEEeCHHHHHHHHH-hCCCeeEEEEEecCCcccC-ceEEEEEEECCCCCCCHHHHHHH----HHh
Confidence            99999999999999999999999999997 8999999999999988877 88899998876555565555555    667


Q ss_pred             ccCCccccceEEEecCCCCCCCchhHHHHHHH
Q 010114          475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD  506 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~  506 (518)
                      +|+++++|..++++++||+|++||++|++|++
T Consensus       481 ~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        481 HLAKYKVPRSIEFLDELPKNATGKVLKRALRE  512 (513)
T ss_pred             hcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence            89999999999999999999999999999874

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=6.6e-63  Score=526.55  Aligned_cols=478  Identities=19%  Similarity=0.234  Sum_probs=366.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF   80 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~   80 (518)
                      +||+||.++++++|++|.+.+++||+|+++++|++++++++|||+++|++++|+++.++++++.+++++++++++|++++
T Consensus       232 ~Ty~el~~~~~~lA~~L~~~~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~  311 (718)
T PRK08043        232 DSYRKLLKKTLFVGRILEKYSVEGERIGLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQ  311 (718)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHH
Confidence            69999999999999999877899999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhh--hhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKD--FLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ..+....... .....  ....+.+.....         ...+.+  .......  .+ ........++++++++|||||
T Consensus       312 ~~~~~~~~~~-~~~~~--~~~~i~~~~~~~---------~~~~~~~~~~~~~~~--~~-~~~~~~~~~~d~a~i~~TSGT  376 (718)
T PRK08043        312 FLDKGKLWHL-PEQLT--QVRWVYLEDLKD---------DVTTADKLWIFAHLL--MP-RLAQVKQQPEDAALILFTSGS  376 (718)
T ss_pred             HHhhccCCCh-hhhhc--cccEEEhhhhhh---------hcchhHHHHHHHHHh--CC-ccccCCCCCCCeEEEEECCCC
Confidence            5321111000 00000  011111111000         001100  0000000  00 000112356899999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      ||.||||+++|.++..........+++.++|++++.+|++|.+++.. ++.++..|+++++.+.......+++.++++++
T Consensus       377 TG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~v  456 (718)
T PRK08043        377 EGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNC  456 (718)
T ss_pred             CCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCC
Confidence            99999999999999988777666778899999999999999999865 88999999999988754556778899999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      |.++++|+++..+.+..  ...++++||.+++||+++++++.+.+.+.+ ++++++.||+||+++....... .....++
T Consensus       457 t~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~-~~~~~~s  532 (718)
T PRK08043        457 TVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTECAPVVSINVP-MAAKPGT  532 (718)
T ss_pred             eEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccccceEEecCC-cccCCCC
Confidence            99999999998886642  345688999999999999999999888776 6889999999999876554332 2345789


Q ss_pred             CCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCcccccccccccee-eeCCCCCCCceeccccceEEEecCce
Q 010114          318 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVY-FRGMPMYKGMCLRRHGDIIKRTVGGY  395 (518)
Q Consensus       318 ~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~TGD~~~~~~~g~  395 (518)
                      +|+|+++++++++|+++.    ++  .||+++ ++..+.+|+...+.+..... ..+......++||+|||+|++|+||+
T Consensus       533 vG~p~pg~~~~i~d~~~~----~~--~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  606 (718)
T PRK08043        533 VGRILPGMDARLLSVPGI----EQ--GGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGF  606 (718)
T ss_pred             CCCcCCCCeeEEecCCCC----CC--ceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCc
Confidence            999999999999997653    33  499999 77766654321112111000 00101112357999999999999999


Q ss_pred             EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 010114          396 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK  475 (518)
Q Consensus       396 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~  475 (518)
                      +++.||.+|+|+++|++|+|.+||+++. +|+.+.+++|++.+++..| +.+++++.   +...+.+++.++    +.++
T Consensus       607 l~i~GR~~d~I~~~G~~V~p~eIE~~l~-~~~~~~~~avv~~~~~~~g-e~~v~~~~---~~~~~~~~l~~~----~~~~  677 (718)
T PRK08043        607 VQIQGRAKRFAKIAGEMVSLEMVEQLAL-GVSPDKQHATAIKSDASKG-EALVLFTT---DSELTREKLQQY----AREH  677 (718)
T ss_pred             EEEEecCCCeeEeCcEEcCHHHHHHHHH-hCCccceEEEEEccCCCCC-ceEEEEEc---CcccCHHHHHHH----HHhc
Confidence            9999999999999999999999999997 8888888999999888877 77777764   223445555554    5555


Q ss_pred             -cCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          476 -LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       476 -l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                       |+.|++|..+++++++|+|++||++|++|++++.+..
T Consensus       678 ~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  715 (718)
T PRK08043        678 GVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDEPE  715 (718)
T ss_pred             CCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhccc
Confidence             9999999999999999999999999999999987643

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-62  Score=512.72  Aligned_cols=487  Identities=22%  Similarity=0.248  Sum_probs=384.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        58 ~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  137 (573)
T PRK05605         58 TTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWD  137 (573)
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEech
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999977


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCC---------------------CCCCcccccchhhhhccCCCCCCCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV---------------------GIPLREQDLSWKDFLSSVDYHPRPNY  138 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (518)
                      ....      ....+.+......++........                     ......+..+|.++......... ..
T Consensus       138 ~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  210 (573)
T PRK05605        138 KVAP------TVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDG-SD  210 (573)
T ss_pred             hhHH------HHHhhhhccccceeEeeecccccccccccccccccccccccccccccCCCcceeHHHHhhccccccc-cc
Confidence            5321      11111111111111111000000                     00011233455555443221000 01


Q ss_pred             CCCCCCCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcccccc-C-CCCcEEEeecCchhhhhhHH-HHHhhhcCcE
Q 010114          139 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-L-KVGDVYCWPTNLGWVMGPVI-LFSSFLNGAT  215 (518)
Q Consensus       139 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~-~-~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~  215 (518)
                      ........+++++++|||||||.||+|.++|.++..++........ + ..++++++..|++|.+|+.. ++.+++.|++
T Consensus       211 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~  290 (573)
T PRK05605        211 VSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGE  290 (573)
T ss_pred             cCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCE
Confidence            1122345689999999999999999999999999877654333222 2 34789999999999999865 6778899999


Q ss_pred             EEEecCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccc
Q 010114          216 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC  295 (518)
Q Consensus       216 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~y  295 (518)
                      +++.+ ..++..+++.++++++|.+.++|.+++.|.+.....+.+++++|.++.||+++++++.+.+.+.+ +.++++.|
T Consensus       291 ~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-~~~i~~~Y  368 (573)
T PRK05605        291 LVLLP-APDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLT-GGLLVEGY  368 (573)
T ss_pred             EEEeC-CCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCCHHHHHHHHHHh-CCCeeccc
Confidence            98876 56789999999999999999999999999988777777889999999999999999999887665 57899999


Q ss_pred             cccccceeEeecCCCCCcccCCCCcccccccEEEECCC--CCCCCCCCCeeeeeee-cccccCCccccccccccceeeeC
Q 010114          296 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC--GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG  372 (518)
Q Consensus       296 g~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~--g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~  372 (518)
                      |+||+++++...........+++|.|.+++.++|+|++  +.+++.|+  .|||++ ++..+.+|.  .+...+...+. 
T Consensus       369 G~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~--~Gel~v~~~~~~~gy~--~~~~~~~~~~~-  443 (573)
T PRK05605        369 GLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE--EGELLVRGPQVFKGYW--NRPEETAKSFL-  443 (573)
T ss_pred             ccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCC--eeEEEEecCchhhhhc--CChhHhhhccc-
Confidence            99999877665554444556789999999999999965  58888888  699999 665555432  22222222221 


Q ss_pred             CCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEE
Q 010114          373 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV  452 (518)
Q Consensus       373 ~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~  452 (518)
                            .+||+|||+++++++|++++.||.+|+++.+|.+|+|.+||+++. .++.|.+++|++.+++..+ +.++++++
T Consensus       444 ------~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~-~~~~i~~~~v~~~~~~~~~-~~~~~~vv  515 (573)
T PRK05605        444 ------DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLR-EHPGVEDAAVVGLPREDGS-EEVVAAVV  515 (573)
T ss_pred             ------CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHH-hCcccceEEEEeeecccCC-eEEEEEEE
Confidence                  249999999999999999999999999999999999999999998 9999999999999988877 89999999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          453 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       453 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      +.++...+.+++.+.    +.++|+++++|..++++++||+|.+||++|++|++++.++++
T Consensus       516 ~~~~~~~~~~~l~~~----~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~~  572 (573)
T PRK05605        516 LEPGAALDPEGLRAY----CREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEKLG  572 (573)
T ss_pred             ECCCCCCCHHHHHHH----HHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHHhc
Confidence            887655565555554    667889999999999999999999999999999999987764

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-62  Score=509.85  Aligned_cols=482  Identities=21%  Similarity=0.193  Sum_probs=392.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.+++.++|+.|.+. +++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++++++
T Consensus        37 ~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~  116 (523)
T PRK08316         37 WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDP  116 (523)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ..+.+..+............  ............+.++......     .........+++++++||||||
T Consensus       117 ~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtT  183 (523)
T PRK08316        117 ALA------PTAEAALALLPVDTLILSLV--LGGREAPGGWLDFADWAEAGSV-----AEPDVELADDDLAQILYTSGTE  183 (523)
T ss_pred             chH------HHHHHHhhhcCccceeeeec--ccccccccchhhHHHHHhcCCC-----ccCccCCCCCCeEEEEeCCCCC
Confidence            532      22222221111111111000  0001111233444444332221     1122234568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      |.||+|.++|.+++.........+++.++|+++..+|++|..++.. ++.++..|+++++.+ ..++..+++.++++++|
T Consensus       184 G~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t  262 (523)
T PRK08316        184 SLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD-APDPELILRTIEAERIT  262 (523)
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEec-CCCHHHHHHHHHHhCCe
Confidence            9999999999999988777777788999999999999999999866 667788999999876 46789999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC-CCcccCC
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGA  317 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~  317 (518)
                      ++.++|+++..+.+.......+++++|.+++||+.++.++.+.+.+.+++.++++.||+||++.+....... .....++
T Consensus       263 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (523)
T PRK08316        263 SFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGS  342 (523)
T ss_pred             EEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCC
Confidence            999999999999988766677889999999999999999999999888788999999999998765544332 2345678


Q ss_pred             CCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114          318 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  396 (518)
Q Consensus       318 ~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  396 (518)
                      +|+|+++++++|+|++|.+++.|+  .||+++ ++....+|.  .+...+...+       .++||+|||+|++++||.+
T Consensus       343 ~G~~~~~~~~~i~~~~~~~~~~g~--~Gei~v~~~~~~~~y~--~~~~~~~~~~-------~~~~~~TGDl~~~~~~g~l  411 (523)
T PRK08316        343 AGRPVLNVETRVVDDDGNDVAPGE--VGEIVHRSPQLMLGYW--DDPEKTAEAF-------RGGWFHSGDLGVMDEEGYI  411 (523)
T ss_pred             cccCCCCcEEEEEcCCCCCCCCCC--cceEEEECCchhhhhc--CCHHHHHHHh-------hCCCeeccceEEEcCCceE
Confidence            999999999999999999999998  699999 666555432  2222222222       2469999999999999999


Q ss_pred             EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      ++.||.+|+++++|.+|+|.+||+.+. ++++|.+++|++.+++..+ +.++++++++++...+.+++.+.    ++++|
T Consensus       412 ~i~gR~~~~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l  485 (523)
T PRK08316        412 TVVDRKKDMIKTGGENVASREVEEALY-THPAVAEVAVIGLPDPKWI-EAVTAVVVPKAGATVTEDELIAH----CRARL  485 (523)
T ss_pred             EEecccccEEEeCCeEECHHHHHHHHH-hCCChheEeEecccCcccC-CeEEEEEEECCCCCCCHHHHHHH----HHHhc
Confidence            999999999999999999999999997 8999999999999988877 88999999887654455555444    66788


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      +++++|..+++++++|+|++||++|++|+++|.+.++
T Consensus       486 ~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~~  522 (523)
T PRK08316        486 AGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAFT  522 (523)
T ss_pred             ccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999987764

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.7e-63  Score=510.06  Aligned_cols=474  Identities=16%  Similarity=0.194  Sum_probs=367.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++.+|+++
T Consensus        42 ~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~  121 (540)
T PRK05857         42 LRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAP  121 (540)
T ss_pred             eeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEec
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ......   ..+.....   ....+........      . . +.......      ..........+++++++||||||
T Consensus       122 ~~~~~~---~~~~~~~~---~~~~~~~~~~~~~------~-~-~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGTT  181 (540)
T PRK05857        122 GSKMAS---SAVPEALH---SIPVIAVDIAAVT------R-E-SEHSLDAA------SLAGNADQGSEDPLAMIFTSGTT  181 (540)
T ss_pred             cchhcc---cccccccc---ccceeEeeccccc------c-c-cccccccc------ccccccCCCCCCeEEEEeCCCCC
Confidence            532111   11111110   0011111000000      0 0 00000000      00011223568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhcc----ccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGW----AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDA  235 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~----~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~  235 (518)
                      |.||||.++|.++.++.....    ..+....+++.+..+|++|.+++...+.+++.|+++++.  ..++..+++.++++
T Consensus       182 G~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~--~~~~~~~~~~i~~~  259 (540)
T PRK05857        182 GEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVTG--GENTTSLLEILTTN  259 (540)
T ss_pred             CCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEec--CCChhHHHHHHHhc
Confidence            999999999999877643221    224556788999999999999988788899999988763  34678899999999


Q ss_pred             CccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC----
Q 010114          236 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----  311 (518)
Q Consensus       236 ~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----  311 (518)
                      ++|.++++|.+++.|++.......+++++|.++++|++++....+++ +.+ +.++++.||+||++......+...    
T Consensus       260 ~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~-~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~  337 (540)
T PRK05857        260 AVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFI-EAT-GVRTAQVYGLSETGCTALCLPTDDGSIV  337 (540)
T ss_pred             CcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHH-HHh-CCeeecccCCCcCCceeeeccccccccc
Confidence            99999999999999988766566788999999999999988777644 344 688999999999986543332221    


Q ss_pred             CcccCCCCcccccccEEEECCCCCC-C-----CCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccc
Q 010114          312 PQAFGAFSTATMTAGLVILDECGVP-Y-----PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH  384 (518)
Q Consensus       312 ~~~~~~~g~~~~~~~~~i~~~~g~~-~-----~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T  384 (518)
                      ....+++|+|+++++++|+|+++.. .     +.++  .|||++ ++..+.+|+  .+++.+...+       .++||+|
T Consensus       338 ~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~--~Gel~v~g~~~~~GY~--~~~~~t~~~~-------~~g~~~T  406 (540)
T PRK05857        338 KIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSAS--FGTLWIKSPANMLGYW--NNPERTAEVL-------IDGWVNT  406 (540)
T ss_pred             ccccCCcCcccCCcEEEEECccccCccccccCCCCC--cceEEEeCcchhhhhh--CCccchhhhc-------CCCceec
Confidence            1245789999999999999987653 2     3355  699999 666555432  2333222222       2469999


Q ss_pred             cceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCC-CChhH
Q 010114          385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDK  463 (518)
Q Consensus       385 GD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~-~~~~~  463 (518)
                      ||+|++|++|++++.||.+|+||++|.+|+|.+||++|. .||+|.+++|++.+++..+ +.+.++++..+... ...++
T Consensus       407 GDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~V~~~~v~~~~~~~~~-~~~~~~vv~~~~~~~~~~~~  484 (540)
T PRK05857        407 GDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAE-GVSGVREAACYEIPDEEFG-ALVGLAVVASAELDESAARA  484 (540)
T ss_pred             cceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHH-hCCCeeEEEEEecCccccc-cceEEEEEeCCCCChhhHHH
Confidence            999999999999999999999999999999999999998 9999999999999988777 78888887765322 12356


Q ss_pred             HHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          464 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       464 l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      +.+.+.+.+++.++++++|..+.+++++|+|++||++|+.|+++++.+
T Consensus       485 l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~  532 (540)
T PRK05857        485 LKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATAD  532 (540)
T ss_pred             HHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhc
Confidence            777888888889999999999999999999999999999999998754

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=2.3e-62  Score=506.22  Aligned_cols=480  Identities=22%  Similarity=0.237  Sum_probs=384.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.+++.++|++|++. +++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|+++
T Consensus        26 ~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~  105 (515)
T TIGR03098        26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSS  105 (515)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhccCCCCcchhhhhccCCC--ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114           80 FILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      ...      ..+.........  ..+.+...  ............|.++......      ..+.....+++++++||||
T Consensus       106 ~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSG  171 (515)
T TIGR03098       106 ERL------DLLHPALPGCHDLRTLILVGEP--AHASEGGGESPSWPKLLALGDA------DPPHPVIDSDMAAILYTSG  171 (515)
T ss_pred             chh------hhhHhhhhcccccceEEEecCc--ccccCCccccccHHHhhccccc------cccCCCCcCCeEEEEECCC
Confidence            432      222222211111  11111111  0000111223345555433221      1222334588999999999


Q ss_pred             CCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          158 TTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |||.||+|.++|.++..++......+++..+|++++.+|++|++++..++.++..|+++++.+ ..++..+++.++++++
T Consensus       172 TTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~  250 (515)
T TIGR03098       172 STGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHD-YLLPRDVLKALEKHGI  250 (515)
T ss_pred             CCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcC-CCCHHHHHHHHHHcCC
Confidence            999999999999999988887777778899999999999999999988899999999999876 5678999999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      |++.++|+++..|.+... ...+++++|.++++|+++++++.+.+.+.+++..+++.||+||++..............++
T Consensus       251 t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  329 (515)
T TIGR03098       251 TGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDS  329 (515)
T ss_pred             ceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCC
Confidence            999999999999987532 2246789999999999999999999998887788999999999986554433333445689


Q ss_pred             CCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCC-----CCCCceeccccceEEEe
Q 010114          318 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMP-----MYKGMCLRRHGDIIKRT  391 (518)
Q Consensus       318 ~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~TGD~~~~~  391 (518)
                      +|.|++++.++|+|+++++++.|+  .||+++ ++..+.+|.  .+...+...+...+     ...+.+||+|||+|+++
T Consensus       330 vG~~~~~~~~~i~~~~~~~~~~~~--~Gel~v~g~~~~~gy~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~  405 (515)
T TIGR03098       330 IGKAIPNAEVLVLREDGSECAPGE--EGELVHRGALVAMGYW--NDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRD  405 (515)
T ss_pred             cceecCCCEEEEECCCCCCCCCCC--ceEEEEcCchhhcccc--CCchhhhhhhhccCCccccccccccceeccceEEEc
Confidence            999999999999999999999998  599999 666555432  22222222222111     12345689999999999


Q ss_pred             cCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHH
Q 010114          392 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA  471 (518)
Q Consensus       392 ~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~  471 (518)
                      ++|++++.||.+|+++.+|.+|+|.+||+++. ++|.|.+++|++.+++..| +.++++++..++...+.+++.+.    
T Consensus       406 ~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~----  479 (515)
T TIGR03098       406 EEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAY-ATGLVAEAVAFGVPDPTLG-QAIVLVVTPPGGEELDRAALLAE----  479 (515)
T ss_pred             CCceEEEEeccccceecCCEEeCHHHHHHHHh-cCCCeeEEEEEeccCcccC-ceEEEEEEeCCCCCCCHHHHHHH----
Confidence            99999999999999999999999999999998 9999999999999998888 88888888765545555555555    


Q ss_pred             HHhccCCccccceEEEecCCCCCCCchhHHHHHHH
Q 010114          472 IQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD  506 (518)
Q Consensus       472 ~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~  506 (518)
                      +.++|+++++|..++++++||+|++||++|++|++
T Consensus       480 l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       480 CRARLPNYMVPALIHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             HHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence            66789999999999999999999999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-62  Score=510.57  Aligned_cols=492  Identities=19%  Similarity=0.219  Sum_probs=389.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++++++.++.+++..+++.++++.+|+++
T Consensus        46 ~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~  125 (558)
T PRK12583         46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICAD  125 (558)
T ss_pred             ecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEec
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhccCCCCcchhhhhccC-------------CCceeeccccccCCCCCCcccccchhhhhccCCCCCC-CCCCCCCCCC
Q 010114           80 FILRGGRKFPLYSKVLGAA-------------PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNP  145 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  145 (518)
                      ..... .....+.......             +.....+.....     .......|.++......... ..........
T Consensus       126 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (558)
T PRK12583        126 AFKTS-DYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA-----PPPGFLAWHELQARGETVSREALAERQASLD  199 (558)
T ss_pred             ccccc-chhHHHHHHhhhhccccccccccccCCcceEEEEecCC-----CCccccchHhhhhcccccccccccccccccC
Confidence            43210 0011111111100             000001100000     01122233333322211000 0011112234


Q ss_pred             CCCEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCC
Q 010114          146 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPL  224 (518)
Q Consensus       146 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~  224 (518)
                      ++++++++|||||||.||+|.++|.++..++......+++.++|++++..|++|.+|... ++.++..|+++++.....+
T Consensus       200 ~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~  279 (558)
T PRK12583        200 RDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFD  279 (558)
T ss_pred             CCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCC
Confidence            688999999999999999999999999988877777788899999999999999999866 8888999999887666677


Q ss_pred             hhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeE
Q 010114          225 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY  304 (518)
Q Consensus       225 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~  304 (518)
                      +..+++.++++++|.++++|+++..+++.......+++++|.++++|+++++++.+++.+.++...+++.||+||++.+.
T Consensus       280 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  359 (558)
T PRK12583        280 PLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVS  359 (558)
T ss_pred             HHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccce
Confidence            88999999999999999999999988877665667789999999999999999999998888777899999999999876


Q ss_pred             eecCCCC--CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCcee
Q 010114          305 IQGSLLQ--PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCL  381 (518)
Q Consensus       305 ~~~~~~~--~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (518)
                      ..+....  .....++|.|.+++.++|+|+++.+++.|+  .|||++ ++....+|+  .+...+...+      ..++|
T Consensus       360 ~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~--~Gel~v~g~~~~~gy~--~~~~~~~~~~------~~~~~  429 (558)
T PRK12583        360 LQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGE--IGELCTRGYSVMKGYW--NNPEATAESI------DEDGW  429 (558)
T ss_pred             eccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCC--eeEEEEEeCccchhhc--CChHHHHhhc------CCCCC
Confidence            5543322  234678999999999999999899999998  699999 665555432  2222222111      24579


Q ss_pred             ccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCCh
Q 010114          382 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP  461 (518)
Q Consensus       382 ~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~  461 (518)
                      |+|||++++++||++++.||.+|+++++|.+|+|.+||++|. .+|+|.+++|++.+++..+ +.+++++++.++...+.
T Consensus       430 ~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~  507 (558)
T PRK12583        430 MHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLF-THPAVADVQVFGVPDEKYG-EEIVAWVRLHPGHAASE  507 (558)
T ss_pred             eeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHH-hCCCeeEEEEEeeecCCCC-cEEEEEEEECCCCCCCH
Confidence            999999999999999999999999999999999999999998 8999999999999988777 88999999877554455


Q ss_pred             hHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          462 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       462 ~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      +++.+.    +.++|+++++|..+++++++|+|++||++|++|+++..++++.
T Consensus       508 ~~i~~~----~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~~~~  556 (558)
T PRK12583        508 EELREF----CKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEELAL  556 (558)
T ss_pred             HHHHHH----HHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhhcCC
Confidence            555544    6678999999999999999999999999999999998877654

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.4e-63  Score=520.90  Aligned_cols=483  Identities=19%  Similarity=0.158  Sum_probs=360.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|++||++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus        78 ~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~  157 (660)
T PLN02861         78 LTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQE  157 (660)
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECH
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhccCCCCcchhhhhccCC--CceeeccccccCCC-----CCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           80 FILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVG-----IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      ...      ..+........  ...++... .....     ........++.+++......     .......++++++|
T Consensus       158 ~~~------~~~~~~~~~~~~~l~~ii~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~dd~a~i  225 (660)
T PLN02861        158 SKI------SSILSCLPKCSSNLKTIVSFG-DVSSEQKEEAEELGVSCFSWEEFSLMGSLD-----CELPPKQKTDICTI  225 (660)
T ss_pred             HHH------HHHHHhhhhCCCCCEEEEEEC-CCChhhhhhhhcCCcEEEEHHHHHHhCccc-----CCCCccCCCceEEE
Confidence            532      11111111111  11111111 10000     00011224566665433210     11112357999999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhhcccccc-----CCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-----LKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS  227 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~-----~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  227 (518)
                      +|||||||.||||++||.+++..+......++     +.++|++++.+|++|.+++...+.+++.|+++++..  .++..
T Consensus       226 ~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~--~~~~~  303 (660)
T PLN02861        226 MYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ--GDIRY  303 (660)
T ss_pred             EecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeC--CCHHH
Confidence            99999999999999999999887665444332     467899999999999999877666899999998864  46789


Q ss_pred             HHHHHHHcCccEEEechHHHHHHHhcc-------------------------------------cCCCC-------Cc-c
Q 010114          228 FGKFVQDAGVTVLGTVPSLVKAWRNTN-------------------------------------CLEGL-------DW-T  262 (518)
Q Consensus       228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~-------------------------------------~~~~~-------~l-~  262 (518)
                      +++.|++++||+++++|.+++.+.+..                                     .....       .+ .
T Consensus       304 ~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~  383 (660)
T PLN02861        304 LMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGG  383 (660)
T ss_pred             HHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCC
Confidence            999999999999999999999886410                                     00000       01 4


Q ss_pred             chhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEEC--CCC-CCCCC
Q 010114          263 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD--ECG-VPYPD  339 (518)
Q Consensus       263 ~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~--~~g-~~~~~  339 (518)
                      ++|.+++||+++++++.+ +...++...++++||+||+++.++..........+++|+|+++++++|+|  ++| ...+.
T Consensus       384 ~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~  462 (660)
T PLN02861        384 RVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSD  462 (660)
T ss_pred             cEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCC
Confidence            789999999999999765 44455445799999999987654433332223568999999999999997  444 23334


Q ss_pred             CCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeee-CceecchhH
Q 010114          340 DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVE  417 (518)
Q Consensus       340 ~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~~  417 (518)
                      +.  .|||++ ++.++.+|  +.+++.+...+       .+|||+|||+|++|+||+|+|+||.||+||+ +|++|+|.+
T Consensus       463 ~~--~GEi~vrGp~v~~GY--~~~pe~T~~~f-------~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~e  531 (660)
T PLN02861        463 VP--RGEICLRGNTLFSGY--HKRQDLTEEVL-------IDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVEN  531 (660)
T ss_pred             CC--ceeEEEcCCcccccc--cCCHHHHHhhh-------hccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHH
Confidence            44  599999 77777664  33444444333       1479999999999999999999999999996 799999999


Q ss_pred             HHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC----------CCChh------HHHHHHHHHHHh-----cc
Q 010114          418 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------TSQPD------KLKMIFSKAIQS-----KL  476 (518)
Q Consensus       418 iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~----------~~~~~------~l~~~~~~~~~~-----~l  476 (518)
                      ||++|. +||.|.+++|++.+.   + +.++|+|++..+.          ..+.+      .+...+.+.+++     .+
T Consensus       532 IE~~l~-~~p~V~~a~V~G~~~---~-~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  606 (660)
T PLN02861        532 LENTYS-RCPLIASIWVYGNSF---E-SFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQL  606 (660)
T ss_pred             HHHHHh-cCCCeeEEEEEecCC---c-ceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            999997 999999999999762   3 6788999876420          01111      133334444432     58


Q ss_pred             CCccccceEEEec-CC-----CCCCCchhHHHHHHHHHhccccc
Q 010114          477 NPLFKVSLVKVVP-EF-----PRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       477 ~~~~~p~~i~~v~-~~-----P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      +.+.++..+.+.+ .|     .+|+++|+.|+.+.+.|+++|+.
T Consensus       607 ~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~  650 (660)
T PLN02861        607 RGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQ  650 (660)
T ss_pred             CCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHH
Confidence            9999999999876 45     79999999999999999998874

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-62  Score=503.24  Aligned_cols=463  Identities=20%  Similarity=0.204  Sum_probs=377.3

Q ss_pred             CCHHHHHHHHHHHHHHHhh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~-~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|++|++ . +++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++.++++
T Consensus        28 ~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~  107 (496)
T PRK06839         28 MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVE  107 (496)
T ss_pred             EEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEc
Confidence            6999999999999999986 5 9999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      +....      ..............+..              .++.++.....       ........+++++++|||||
T Consensus       108 ~~~~~------~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-------~~~~~~~~~~~~~i~~TSGT  160 (496)
T PRK06839        108 KTFQN------MALSMQKVSYVQRVISI--------------TSLKEIEDRKI-------DNFVEKNESASFIICYTSGT  160 (496)
T ss_pred             HHHHH------HHHHhhhccCcceEEEe--------------cchHhhhccCC-------CCCCCCCCCCcEEEEeCCCC
Confidence            75431      11111111111111100              01222211111       01112345889999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      ||.||+|.++|.++..+.......+++..+|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.++++++
T Consensus       161 TG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~  239 (496)
T PRK06839        161 TGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPR-KFEPTKALSMIEKHKV  239 (496)
T ss_pred             CCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEcc-CCCHHHHHHHHHhhCC
Confidence            99999999999998776665556677889999999999999999866 678899999987755 6788999999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCC-CCCcccC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFG  316 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~-~~~~~~~  316 (518)
                      |.+.++|.+++.+++.......+++++|.+++||+++++++.+.+.+.  ++++.+.||+||++........ ......+
T Consensus       240 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  317 (496)
T PRK06839        240 TVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEEDARRKVG  317 (496)
T ss_pred             eEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEecccccccccCC
Confidence            999999999999998876666788999999999999999999988765  6889999999999875443332 2234568


Q ss_pred             CCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCce
Q 010114          317 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY  395 (518)
Q Consensus       317 ~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  395 (518)
                      ++|.|++++.++|+|+++..++.|+  .|||++ ++..+.+|  +.+++.+...+       .++||+|||+++++++|+
T Consensus       318 ~~G~p~~~~~~~i~d~~~~~~~~g~--~Gel~v~~~~~~~gy--~~~~~~~~~~~-------~~g~~~TGDl~~~~~~g~  386 (496)
T PRK06839        318 SIGKPVLFCDYELIDENKNKVEVGE--VGELLIRGPNVMKEY--WNRPDATEETI-------QDGWLCTGDLARVDEDGF  386 (496)
T ss_pred             CCcccCCCceEEEECCCcCCCCCCC--ceEEEEECCCcchhh--cCChHHHHHHH-------cCCCeeecceEEEcCCCc
Confidence            9999999999999999999999998  699999 65554432  22222222111       246999999999999999


Q ss_pred             EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 010114          396 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK  475 (518)
Q Consensus       396 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~  475 (518)
                      +++.||.+|+|+.+|.+|+|.+||+++. .+|+|.+++|++.+++..| +.++++|+++++...+.+++++.    +.++
T Consensus       387 ~~~~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~~~~  460 (496)
T PRK06839        387 VYIVGRKKEMIISGGENIYPLEVEQVIN-KLSDVYEVAVVGRQHVKWG-EIPIAFIVKKSSSVLIEKDVIEH----CRLF  460 (496)
T ss_pred             EEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-ceEEEEEEECCCCCCCHHHHHHH----HHhh
Confidence            9999999999999999999999999997 8999999999999998888 89999999987655555555444    6678


Q ss_pred             cCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          476 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       476 l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      |+++++|..+++++++|+|.+||++|++|+++.++
T Consensus       461 l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        461 LAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             CcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence            99999999999999999999999999999998764

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4e-62  Score=506.06  Aligned_cols=476  Identities=19%  Similarity=0.209  Sum_probs=378.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        54 ~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~  133 (538)
T TIGR03208        54 FSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPS  133 (538)
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCC-ceeeccccccCCCCCCcccccchhhhhccCCCCCCCC---CCCCCCCCCCCEEEEEec
Q 010114           80 FILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN---YYSPVYNPVDAVVNILFS  155 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~T  155 (518)
                      .... ................ ..++.... .        ....+.+++........+.   ........++++++++||
T Consensus       134 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T  203 (538)
T TIGR03208       134 VFRG-FDHAAMARELQSKLPALRQVVVIDG-D--------GDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYT  203 (538)
T ss_pred             cccc-ccHHHHHHHHhccCCcceEEEEecC-C--------CCcCHHHHhhccccccccccccccccCCCCCCCeEEEEEC
Confidence            4310 0000111111111111 11111111 0        1112333322111100000   011123456899999999


Q ss_pred             cCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114          156 SGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQD  234 (518)
Q Consensus       156 SGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~  234 (518)
                      |||||.||+|+++|.++...+......+++..+|++++.+|++|..++.. ++.+++.|+++++.+ ..++..+++.+++
T Consensus       204 SGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~  282 (538)
T TIGR03208       204 SGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQD-IWNPARAAELIRE  282 (538)
T ss_pred             CCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecC-ccCHHHHHHHHHH
Confidence            99999999999999999988887777778889999999999999998765 888999999998865 5678999999999


Q ss_pred             cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-Cc
Q 010114          235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQ  313 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~  313 (518)
                      +++|++.++|.++..+.+.....+.+++++|.++++|+++++++.+++.+.+ ++++++.||+||++.+........ ..
T Consensus       283 ~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~  361 (538)
T TIGR03208       283 TGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTVTEPDDALEK  361 (538)
T ss_pred             hCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCCCccccCcccchhh
Confidence            9999999999999998876544556788999999999999999999888776 678999999999987655443322 12


Q ss_pred             ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      ...++|.|+++++++|+|+++.+++.|+  .|||++ ++....+|.  .+++.+.        ..+++||+|||+|++|+
T Consensus       362 ~~~~~G~~~~g~~v~i~~~~~~~~~~g~--~Gel~v~g~~~~~gy~--~~~~~~~--------~~~~~~~~TGD~~~~~~  429 (538)
T TIGR03208       362 ASTTDGRPLPGVEVKVIDANGAKLSQGE--TGRLLVRGCSNFGGYL--KRPHLNS--------TDAEGWFDTGDLAFQDA  429 (538)
T ss_pred             ccCcccccCCCCEEEEECCCCCCCcCCC--CcEEEEecCccccccc--CCccccc--------ccCCCceeccceEEECC
Confidence            2457899999999999999999999998  599999 665554432  2222211        13568999999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      +|+++++||.+|+++.+|++|+|.+||++|. +||+|.+++|++.+++..| +.+.+++++.++...+.+++.+++++  
T Consensus       430 ~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~a~v~~~~~~~~~~~~l~~~~~~--  505 (538)
T TIGR03208       430 EGYIRINGRSKDVIIRGGENIPVVEIENLLY-QHPAVAQVAIVAYPDERLG-ERACAVVVPKPGCTLDFAAMVAFLKA--  505 (538)
T ss_pred             CCcEEEEeccCceEEECCEEECHHHHHHHHh-cCcceeeEEEEeccCCCCC-ceEEEEEEECCCCCCCHHHHHHHHHh--
Confidence            9999999999999999999999999999997 8999999999999988877 89999999887655666666665432  


Q ss_pred             HhccCCccccceEEEecCCCCCCCchhHHHHHH
Q 010114          473 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR  505 (518)
Q Consensus       473 ~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~  505 (518)
                       .+++.+++|..+++++++|+|++||++|++|+
T Consensus       506 -~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       506 -QKVALQYIPERLEVVDALPATPAGKIQKFRLR  537 (538)
T ss_pred             -cchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence             37889999999999999999999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=2.2e-62  Score=494.09  Aligned_cols=428  Identities=15%  Similarity=0.130  Sum_probs=346.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-c-CCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v-~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +.|+||.++++++|++|++. + ++|++|+++++|+++++++++||+++|++++|+++.+++.++.++++++++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            57999999999999999998 6 679999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      +....      .             ...                  .    ...   .    .....++++++++|||||
T Consensus       100 ~~~~~------~-------------~~~------------------~----~~~---~----~~~~~~~~~~~i~~TSGT  131 (452)
T PRK07445        100 DQLKL------S-------------HPP------------------P----LPS---Q----GILPNLETGWIMIPTGGS  131 (452)
T ss_pred             Ccccc------c-------------cCC------------------C----CCc---c----ccCCCCCCcEEEEeCCCC
Confidence            63210      0             000                  0    000   0    001235889999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      ||.||+|++||.+++..+......+++.+ ++.++.+|++|.+|+..++.++..|+++++.+.. ..........++++|
T Consensus       132 TG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~-~~~~~~~~~~~~~~t  209 (452)
T PRK07445        132 SGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQELPPNPSDF  209 (452)
T ss_pred             CCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChH-hccchhhhhhhcCce
Confidence            99999999999999887776655555554 4578899999999998888999999999987632 222223444578899


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-CcccCC
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFGA  317 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~~~~~  317 (518)
                      ++.++|++++.+++..   ...++++|.+++||++++++..+.+.. . +.++++.||+||++..+....... ....++
T Consensus       210 ~~~~vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~  284 (452)
T PRK07445        210 FLSLVPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLKPDDFLAGNNS  284 (452)
T ss_pred             EEEehHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccCchhhccCCCc
Confidence            9999999999998632   345789999999999999998887764 3 678999999999876543332221 224568


Q ss_pred             CCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114          318 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  396 (518)
Q Consensus       318 ~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  396 (518)
                      +|.|.++++++|+        .++  .|||++ ++..+.+|+.   .           ....++||+|||++++|+||++
T Consensus       285 ~G~~~p~~~v~i~--------~g~--~Gel~v~g~~~~~gY~~---~-----------~~~~~g~~~TGDl~~~d~dG~l  340 (452)
T PRK07445        285 SGQVLPHAQITIP--------ANQ--TGNITIQAQSLALGYYP---Q-----------ILDSQGIFETDDLGYLDAQGYL  340 (452)
T ss_pred             CCccCCCCeEEEc--------CCC--cceEEEeCCccchhhcC---C-----------ccCCCCEEECCCEEEEcCCCCE
Confidence            9999999999987        233  599999 6666655321   1           1124579999999999999999


Q ss_pred             EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      ++.||.+|+|+++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++++..++ ..+.+++    ++++.++|
T Consensus       341 ~~~GR~dd~I~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~~~~~~g-~~~~a~vv~~~~-~~~~~~l----~~~~~~~L  413 (452)
T PRK07445        341 HILGRNSQKIITGGENVYPAEVEAAIL-ATGLVQDVCVLGLPDPHWG-EVVTAIYVPKDP-SISLEEL----KTAIKDQL  413 (452)
T ss_pred             EEEeecCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEeccCcCCC-cEEEEEEEeCCC-CCCHHHH----HHHHHHhC
Confidence            999999999999999999999999997 9999999999999998888 889999988654 2344444    44467789


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      ++|++|..+++++++|+|++||++|++|++++.++|+.
T Consensus       414 ~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~  451 (452)
T PRK07445        414 SPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRLGL  451 (452)
T ss_pred             CcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999988763

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.2e-62  Score=505.26  Aligned_cols=479  Identities=22%  Similarity=0.243  Sum_probs=393.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++|++|+++++|+++++++++||+++|++++++++..+.+++..+++.++++++++++
T Consensus        32 ~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~  111 (521)
T PRK06187         32 TTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDS  111 (521)
T ss_pred             EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999997


Q ss_pred             hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ...      ..+.++.+..+.. .++..... ... ........+.+++.....     .........+++++++|||||
T Consensus       112 ~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGt  178 (521)
T PRK06187        112 EFV------PLLAAILPQLPTVRTVIVEGDG-PAA-PLAPEVGEYEELLAAASD-----TFDFPDIDENDAAAMLYTSGT  178 (521)
T ss_pred             hHH------HHHHHHhhccCCccEEEEecCc-ccc-ccccccccHHHHhhcCCc-----cCCCCCCCccceEEEEECCCC
Confidence            543      2233333322221 12221111 100 112334455555443221     111223456889999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      ||.||+|.++|.++..........+++.++|++++..|++|.+++...+.++..|+++++.+.. ++..+++.++++++|
T Consensus       179 TG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t  257 (521)
T PRK06187        179 TGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVT  257 (521)
T ss_pred             CCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCe
Confidence            9999999999999998888777788899999999999999999988766699999999988764 889999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCC-----c
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP-----Q  313 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~-----~  313 (518)
                      .++++|++++.+.+.......+++++|.++.+||+++.++.+++.+.+ ++++++.||+||++++.........     .
T Consensus       258 ~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (521)
T PRK06187        258 FFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWT  336 (521)
T ss_pred             EEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCcccccccccc
Confidence            999999999999988876677889999999999999999999999887 7889999999999876555443332     2


Q ss_pred             ccCCCCcccccccEEEECCCCCCCCC--CCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEE
Q 010114          314 AFGAFSTATMTAGLVILDECGVPYPD--DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR  390 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~~~~~--~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~  390 (518)
                      ...++|.|++++.++|+|+++.+++.  |+  .|||++ ++....+|.  .+.+.+...+       ..+||+|||++++
T Consensus       337 ~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~--~Gel~v~~~~~~~~y~--~~~~~~~~~~-------~~~~~~tGD~~~~  405 (521)
T PRK06187        337 KRRSAGRPLPGVEARIVDDDGDELPPDGGE--VGEIIVRGPWLMQGYW--NRPEATAETI-------DGGWLHTGDVGYI  405 (521)
T ss_pred             cCCccccccCCeEEEEECCCCCCCCCCCCC--eeEEEEECcchhhhhc--CCHHHHHHHh-------hCCceeccceEEE
Confidence            66789999999999999999999998  77  699999 555444432  1222222222       1239999999999


Q ss_pred             ecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHH
Q 010114          391 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK  470 (518)
Q Consensus       391 ~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~  470 (518)
                      +++|++++.||.+|+++++|.+++|.+||++|. .+++|.+++|++.+++..+ +.+.++++++++...+.+++.++   
T Consensus       406 ~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~---  480 (521)
T PRK06187        406 DEDGYLYITDRIKDVIISGGENIYPRELEDALY-GHPAVAEVAVIGVPDEKWG-ERPVAVVVLKPGATLDAKELRAF---  480 (521)
T ss_pred             cCCCCEEEeecccceEEcCCeEECHHHHHHHHH-hCCCceEEEEEeccCCCcC-ceEEEEEEECCCCCCCHHHHHHH---
Confidence            999999999999999999999999999999997 8999999999999887777 88999999887666666666655   


Q ss_pred             HHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          471 AIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       471 ~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                       +.++++++++|..+++++++|+|++||++|..|+++|++.
T Consensus       481 -l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~  520 (521)
T PRK06187        481 -LRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEG  520 (521)
T ss_pred             -HHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcC
Confidence             5678899999999999999999999999999999999863

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=6e-62  Score=505.42  Aligned_cols=475  Identities=19%  Similarity=0.208  Sum_probs=378.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++|+++
T Consensus        56 ~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~  135 (546)
T PLN02330         56 VTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTND  135 (546)
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ....      .+..    .....+.+..  ..     ......+.+++...+..  ...........+++++++||||||
T Consensus       136 ~~~~------~~~~----~~~~~i~~~~--~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTT  196 (546)
T PLN02330        136 TNYG------KVKG----LGLPVIVLGE--EK-----IEGAVNWKELLEAADRA--GDTSDNEEILQTDLCALPFSSGTT  196 (546)
T ss_pred             chhh------hHhh----cCCcEEEecC--CC-----CCCcccHHHHHhhcccc--CcccccccCCcccEEEEEeCCCCc
Confidence            5331      1111    1111111111  00     11233455555433221  111112223468999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccc--cCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHI--DLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAG  236 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~--~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  236 (518)
                      |.||+|.++|.++..+........  .....++.+..+|++|.+++.. ++.++..|+++++.+ ..++..+++.+++++
T Consensus       197 G~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~  275 (546)
T PLN02330        197 GISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMS-RFELRTFLNALITQE  275 (546)
T ss_pred             CCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEec-ccCHHHHHHHHHHcC
Confidence            999999999999887654322111  1223467899999999999875 788899999998876 567889999999999


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCcc--chhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC---
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWT--KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ---  311 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~--~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~---  311 (518)
                      +|.+.++|+++..+++.......+++  ++|.++++|+++++++.+++.+.+++.++++.||+||++.+...+....   
T Consensus       276 vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~  355 (546)
T PLN02330        276 VSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGH  355 (546)
T ss_pred             CeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccc
Confidence            99999999999999886554445554  4789999999999999999998887889999999999986544332111   


Q ss_pred             -CcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114          312 -PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII  388 (518)
Q Consensus       312 -~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~  388 (518)
                       .....++|.|+++++++|+| +++++++.|+  .|||++ ++.+..+|.  .+...+...+      +.++||+|||++
T Consensus       356 ~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~--~Gel~v~g~~~~~gy~--~~~~~~~~~~------~~~g~~~TGD~~  425 (546)
T PLN02330        356 GIAKKNSVGFILPNLEVKFIDPDTGRSLPKNT--PGELCVRSQCVMQGYY--NNKEETDRTI------DEDGWLHTGDIG  425 (546)
T ss_pred             cccccCccccccCCcEEEEEeCCCCccCCCCC--ceEEEEecchhhhhhc--cCccchhhhc------cCCCceecccEE
Confidence             12346899999999999999 6789999998  699999 666555432  2222222221      356799999999


Q ss_pred             EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114          389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF  468 (518)
Q Consensus       389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~  468 (518)
                      ++++||++++.||.+|+++++|++|+|.+||+++. ++|+|.+++|++.+++..| +.+.++|++.++...+.+++.+. 
T Consensus       426 ~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~a~v~~~~~~~~~~~~l~~~-  502 (546)
T PLN02330        426 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILL-THPSVEDAAVVPLPDEEAG-EIPAACVVINPKAKESEEDILNF-  502 (546)
T ss_pred             EEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHH-hCCchheEEEEeccccccC-ceeEEEEEECCCCCCCHHHHHHH-
Confidence            99999999999999999999999999999999997 8999999999999988888 88999999887655555555444 


Q ss_pred             HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                         +.++|++++.|..+++++++|+|.+||++|++|++++...
T Consensus       503 ---~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~  542 (546)
T PLN02330        503 ---VAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSI  542 (546)
T ss_pred             ---HHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence               6678999999999999999999999999999999999765

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-62  Score=498.36  Aligned_cols=457  Identities=21%  Similarity=0.236  Sum_probs=369.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.+.++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++.++++++..+++.++++++|+++
T Consensus        23 ~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~  102 (488)
T PRK09088         23 WTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDD  102 (488)
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcc
Confidence            59999999999999999998 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ......                .                ..+.+.++......  . ..........+++++++||||||
T Consensus       103 ~~~~~~----------------~----------------~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~i~~TSGTT  147 (488)
T PRK09088        103 AVAAGR----------------T----------------DVEDLAAFIASADA--L-EPADTPSIPPERVSLILFTSGTS  147 (488)
T ss_pred             hhhccc----------------c----------------cccchhhhhhhccc--c-ccccCCCCCCCCceEEEeCCCCC
Confidence            432100                0                00011111111110  0 00011123457899999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHH--HcC
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQ--DAG  236 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~--~~~  236 (518)
                      |.||+|.++|+++...............+|++++.+|++|.+++.. ++.++..|+++++.+ ...+..++..+.  +++
T Consensus       148 G~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~~~~~~~~  226 (488)
T PRK09088        148 GQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSN-GFEPKRTLGRLGDPALG  226 (488)
T ss_pred             CCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcC-CCCHHHHHHHHHhhccC
Confidence            9999999999999877666555566788999999999999999876 778888899988765 566777887775  489


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC--CCcc
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQA  314 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~--~~~~  314 (518)
                      +|.++++|.+++.+.+........++++|.+++||++++....+.+.+.  ++++++.||+||++.++......  ....
T Consensus       227 ~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~  304 (488)
T PRK09088        227 ITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAK  304 (488)
T ss_pred             CcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCccccccc
Confidence            9999999999999987655455668899999999999998887776644  67899999999998754322211  1235


Q ss_pred             cCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecC
Q 010114          315 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  393 (518)
Q Consensus       315 ~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  393 (518)
                      .+++|.|.++++++|+|+++.+++.|+  .|||++ ++.+..+|.  .+...+...+      .+++||+|||+|+++++
T Consensus       305 ~~~vG~~~~~~~~~i~d~~~~~~~~g~--~Gel~v~~~~~~~gY~--~~~~~~~~~~------~~~g~~~TGDl~~~~~~  374 (488)
T PRK09088        305 AGAAGIPTPTVQTRVVDDQGNDCPAGV--PGELLLRGPNLSPGYW--RRPQATARAF------TGDGWFRTGDIARRDAD  374 (488)
T ss_pred             CCccccCCCCcEEEEECCCCCCCcCCC--ceEEEEECCccchhhc--CChhhhhhhh------cCCCCeeecceEEEcCC
Confidence            578999999999999999999999998  599999 776665432  1222222222      34679999999999999


Q ss_pred             ceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHH
Q 010114          394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  473 (518)
Q Consensus       394 g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  473 (518)
                      |.+++.||.+|+|+.+|.+|+|.+||++|. .+|.|.+++|++.+++..| +...++++++++...+.+++.+.    +.
T Consensus       375 g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~~  448 (488)
T PRK09088        375 GFFWVVDRKKDMFISGGENVYPAEIEAVLA-DHPGIRECAVVGMADAQWG-EVGYLAIVPADGAPLDLERIRSH----LS  448 (488)
T ss_pred             CcEEEeccccceEEeCCEEECHHHHHHHHH-hCCCcceEEEEeCCCccCC-ceeEEEEEECCCCCCCHHHHHHH----HH
Confidence            999999999999999999999999999997 8999999999999987777 78888988877554455555554    66


Q ss_pred             hccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          474 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       474 ~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      ++++++++|..+.++++||+|++||++|++|++++.+-
T Consensus       449 ~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~  486 (488)
T PRK09088        449 TRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAG  486 (488)
T ss_pred             hhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence            78899999999999999999999999999999998754

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-61  Score=501.59  Aligned_cols=480  Identities=20%  Similarity=0.235  Sum_probs=381.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++.++++.
T Consensus        40 ~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~  119 (542)
T PRK06018         40 TTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDL  119 (542)
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEcc
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCC-ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ...      +.+.+..+.... ..++..............+...+.+++.....     .........+++++++|||||
T Consensus       120 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGT  188 (542)
T PRK06018        120 TFV------PILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADG-----DFAWKTFDENTAAGMCYTSGT  188 (542)
T ss_pred             ccH------HHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCCc-----ccCcccCCccceeeEEecCCC
Confidence            432      222222221111 11111111111111111233355555543321     111223455789999999999


Q ss_pred             CCCCceEEeccchhH-HHh-hhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114          159 TGEPKAIPWTQLSSI-RCT-AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAG  236 (518)
Q Consensus       159 TG~pK~v~~s~~~~~-~~~-~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  236 (518)
                      ||.||+|.++|.+++ ... ......+++..+|+++...|++|.+++...+.++..|+++++.....++..+++.+++++
T Consensus       189 TG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~  268 (542)
T PRK06018        189 TGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEK  268 (542)
T ss_pred             CCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcC
Confidence            999999999998743 222 233345678899999999999999988777788899999988655667789999999999


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCC----
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP----  312 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~----  312 (518)
                      +|.+.++|++++.|.+.......+++++|.++++|+++++++.+++.+ + +.++++.||+||++.+...+.....    
T Consensus       269 ~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  346 (542)
T PRK06018        269 VTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M-GVEVRHAWGMTEMSPLGTLAALKPPFSKL  346 (542)
T ss_pred             CceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h-CCCeEeeecccccCcccccccCccccccC
Confidence            999999999999998877666677899999999999999999999987 4 7889999999999876544322111    


Q ss_pred             ------cccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceecccc
Q 010114          313 ------QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG  385 (518)
Q Consensus       313 ------~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG  385 (518)
                            ....++|.|.++++++|+|+++++++.+....||+++ ++....+|+.   .  +...      ...++||+||
T Consensus       347 ~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~---~--~~~~------~~~~~~~~TG  415 (542)
T PRK06018        347 PGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYR---V--DGEI------LDDDGFFDTG  415 (542)
T ss_pred             CchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcchhhhc---C--cccE------ecCCcEEEcC
Confidence                  1135789999999999999999988865323699999 6666554332   1  1111      2356799999


Q ss_pred             ceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHH
Q 010114          386 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK  465 (518)
Q Consensus       386 D~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~  465 (518)
                      |+++++++|++++.||.+|+++++|.+|++.+||+++. ++|+|.+++|++.+++..+ +.+.+++++.++...+.+++.
T Consensus       416 Dl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~  493 (542)
T PRK06018        416 DVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAV-GHPKVAEAAVIGVYHPKWD-ERPLLIVQLKPGETATREEIL  493 (542)
T ss_pred             CEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHH-hCCcceeEEEEeccCCCcC-ceeEEEEEeCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999997 8999999999999988777 888899988877666666655


Q ss_pred             HHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          466 MIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       466 ~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      +.    +.++++.+++|..+.++++||+|++||++|++|+++|.+
T Consensus       494 ~~----~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        494 KY----MDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             HH----HHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            55    556889999999999999999999999999999999987

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1e-61  Score=506.05  Aligned_cols=493  Identities=20%  Similarity=0.224  Sum_probs=391.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|+++..+..++..+++.++++.+|+++
T Consensus        44 ~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~  123 (559)
T PRK08315         44 WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAAD  123 (559)
T ss_pred             EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEec
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccC-------------C-CceeeccccccCCCCCCcccccchhhhhccCCCCCCC-CCCCCCCC
Q 010114           80 FILRGGRKFPLYSKVLGAA-------------P-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP-NYYSPVYN  144 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  144 (518)
                      +.... .....+.......             . ....+.. ...     ...+...+.++.......... ........
T Consensus       124 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (559)
T PRK08315        124 GFKDS-DYVAMLYELAPELATCEPGQLQSARLPELRRVIFL-GDE-----KHPGMLNFDELLALGRAVDDAELAARQATL  196 (559)
T ss_pred             ccccc-chHHHHHHhhhhhhcccccccccccCCCceeEEee-ccc-----CCcccccHHHHHhhccccccccccchhccC
Confidence            53210 0001111110000             0 0001110 000     011223444443322110001 01112223


Q ss_pred             CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCC
Q 010114          145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP  223 (518)
Q Consensus       145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~  223 (518)
                      ..+++++++|||||||.||+|.++|.+++.++......+++.++|+++...|++|.+++.. ++.++..|+++++.....
T Consensus       197 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~  276 (559)
T PRK08315        197 DPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGF  276 (559)
T ss_pred             CCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCC
Confidence            5688999999999999999999999999988887777788999999999999999999866 889999999998776677


Q ss_pred             ChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceecccccccccee
Q 010114          224 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA  303 (518)
Q Consensus       224 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~  303 (518)
                      ++..+++.++++++|.++++|+++..++........+++++|.++++|++++.++.+.+.+.++..++++.||+||++..
T Consensus       277 ~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~  356 (559)
T PRK08315        277 DPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPV  356 (559)
T ss_pred             CHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccc
Confidence            88999999999999999999999998887765566678999999999999999999998888766679999999999876


Q ss_pred             EeecCCCC--CcccCCCCcccccccEEEECCC-CCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCc
Q 010114          304 YIQGSLLQ--PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGM  379 (518)
Q Consensus       304 ~~~~~~~~--~~~~~~~g~~~~~~~~~i~~~~-g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (518)
                      ++......  .....++|.|++++.++|+|++ |++++.|+  .|||++ ++....+|.  .++..+...+      ...
T Consensus       357 ~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~--~GEl~v~g~~~~~gy~--~~~~~~~~~~------~~~  426 (559)
T PRK08315        357 STQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGE--QGELCTRGYSVMKGYW--NDPEKTAEAI------DAD  426 (559)
T ss_pred             eeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCC--ceEEEEECchhhhhhc--CChhHHhhcC------CCC
Confidence            55443332  2346789999999999999977 99999999  699999 666665432  2222222111      245


Q ss_pred             eeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC
Q 010114          380 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS  459 (518)
Q Consensus       380 ~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~  459 (518)
                      +||+|||++++++||.++++||.+|+++++|.+|+|.+||++|. .+|+|.+++|++.+++..+ +.++++|++.++...
T Consensus       427 ~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~  504 (559)
T PRK08315        427 GWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLY-THPKIQDVQVVGVPDEKYG-EEVCAWIILRPGATL  504 (559)
T ss_pred             CCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHH-hCCCceEEEEEecCCCCCC-eEEEEEEEeCCCCCC
Confidence            69999999999999999999999999999999999999999998 8999999999999988777 788899888765544


Q ss_pred             ChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccccC
Q 010114          460 QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRS  516 (518)
Q Consensus       460 ~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~~~  516 (518)
                      +.+++.++    +.++++.|++|..+++++++|+|.+||++|.+|++++...+..++
T Consensus       505 ~~~~l~~~----l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~~~~~  557 (559)
T PRK08315        505 TEEDVRDF----CRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEELGLQA  557 (559)
T ss_pred             CHHHHHHH----HHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhhchhh
Confidence            55555555    667889999999999999999999999999999999988776654

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.6e-62  Score=503.98  Aligned_cols=476  Identities=20%  Similarity=0.227  Sum_probs=370.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++++++.++..++.++++.++++.+|++.
T Consensus        44 ~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  123 (534)
T PRK05852         44 ISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDA  123 (534)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcC
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .....     ........... ...+.....     ........ ........  ..... ......+++++++||||||
T Consensus       124 ~~~~~-----~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~--~~~~~-~~~~~~~~~a~il~TSGTT  188 (534)
T PRK05852        124 DGPHD-----RAEPTTRWWPL-TVNVGGDSG-----PSGGTLSV-HLDAATEP--TPATS-TPEGLRPDDAMIMFTGGTT  188 (534)
T ss_pred             CCcch-----hccccccccce-eeeeccccc-----cccccccc-ccccccCC--Ccccc-ccCCCCCCceEEEeCCCCC
Confidence            32110     00000000000 011110000     00000000 00000000  00001 1112246789999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecC-CCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG-SPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~  237 (518)
                      |.||+|.++|.++...+......+++..+|++++.+|++|.+++.. ++.+++.|+++++.+. ..++..+++.++++++
T Consensus       189 G~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~  268 (534)
T PRK05852        189 GLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGA  268 (534)
T ss_pred             CCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCC
Confidence            9999999999999988887777788899999999999999999876 8888888988877442 3467899999999999


Q ss_pred             cEEEechHHHHHHHhcccCC--CCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC-----
Q 010114          238 TVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-----  310 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~--~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-----  310 (518)
                      |.++++|+++..+.+.....  ..+.+++|.++++|+++++++.+++.+.+ +.++++.||+||++..+......     
T Consensus       269 t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~  347 (534)
T PRK05852        269 TWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQT  347 (534)
T ss_pred             cEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCccccccc
Confidence            99999999999998765332  34577999999999999999999998776 67899999999998755433221     


Q ss_pred             --CCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccce
Q 010114          311 --QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI  387 (518)
Q Consensus       311 --~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~  387 (518)
                        .....+..|. .+++.++++|++|++++.|+  .|||++ ++.++.+|.  .+.+.+...+       .++||+|||+
T Consensus       348 ~~~~~~~g~~g~-~~g~~~~i~d~~g~~~~~g~--~Gel~v~g~~v~~gY~--~~~~~t~~~~-------~~g~~~TGD~  415 (534)
T PRK05852        348 ENPVVSTGLVGR-STGAQIRIVGSDGLPLPAGA--VGEVWLRGTTVVRGYL--GDPTITAANF-------TDGWLRTGDL  415 (534)
T ss_pred             cCcccccccCCC-CCCCeEEEECCCCCCCCCCC--ceEEEEecCcccchhc--CCcccchhhh-------cCCCcccCce
Confidence              1112333443 68999999999999999998  699999 666665432  2333322222       2469999999


Q ss_pred             EEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHH
Q 010114          388 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI  467 (518)
Q Consensus       388 ~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~  467 (518)
                      +++|+||++++.||.+|+++.+|.+|+|.+||+++. ++|+|.+++|++.+++..| +.+.++++..+....+.+++.++
T Consensus       416 ~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~-~~~~V~~~~v~g~~~~~~g-~~~~~~vv~~~~~~~~~~~i~~~  493 (534)
T PRK05852        416 GSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLA-SHPNVMEAAVFGVPDQLYG-EAVAAVIVPRESAPPTAEELVQF  493 (534)
T ss_pred             EEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHH-hCCCeeeEEEEecCCcCcC-ceEEEEEEECCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999997 8999999999999988877 88889988766544555555555


Q ss_pred             HHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          468 FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       468 ~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                          +.++|+++++|..|+++++||+|++||++|++|+++|..
T Consensus       494 ----~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        494 ----CRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             ----HHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence                667889999999999999999999999999999998864

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.2e-61  Score=499.12  Aligned_cols=467  Identities=19%  Similarity=0.191  Sum_probs=381.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.+++.++|+.|.+. +++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++..+++.+++++
T Consensus        26 ~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~  105 (502)
T TIGR01734        26 LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTA  105 (502)
T ss_pred             EeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .......            ....+.+.               ....+......     .........++.++++||||||
T Consensus       106 ~~~~~~~------------~~~~~~~~---------------~~~~~~~~~~~-----~~~~~~~~~~~~~~il~TSGTT  153 (502)
T TIGR01734       106 ELSIDAV------------GTQIITLS---------------ALEQAETSGGP-----VSFDHAVKGDDNYYIIYTSGST  153 (502)
T ss_pred             ccccccc------------CCceEEch---------------HhhhhhhhcCC-----ccccccCCCCCeEEEEECCCCC
Confidence            4321000            00000000               00111111100     0111123458899999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~  237 (518)
                      |.||+|.++|.++..+..+....++...+++++...|++|..++..++.++..|+++++.+..  .++..+++.+.++++
T Consensus       154 G~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~  233 (502)
T TIGR01734       154 GNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGL  233 (502)
T ss_pred             CCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCC
Confidence            999999999999998888777777888999999999999999988899999999999988753  357889999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC----CCc
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQ  313 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~  313 (518)
                      +.+.++|.+++.++.........+++++.++++|+++++++.+++.+.++++++++.||+||++..+......    ...
T Consensus       234 ~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  313 (502)
T TIGR01734       234 NVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY  313 (502)
T ss_pred             eEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence            9999999999888766544556788999999999999999999999888888999999999987644332221    122


Q ss_pred             ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      ...++|.+.++++++|+|+++.+++.|+  .|||++ ++..+.+|.  .+++.+...+.   ...+.+||+|||+|++|+
T Consensus       314 ~~~~vg~~~~~~~~~i~~~~~~~~~~g~--~Gel~v~g~~~~~gy~--~~~~~~~~~~~---~~~~~~~~~TGDlg~~~~  386 (502)
T TIGR01734       314 PRLPIGFAKPDMNLFIMDEEGEPLPEGE--KGEIVIVGPSVSKGYL--NNPEKTAEAFF---SHEGQPAYRTGDAGTITD  386 (502)
T ss_pred             CccccccccCCCEEEEECCCCCCCCCCC--eeEEEEcccccccccc--CCcccchHhhe---eCCCcEEEECCCEEEEEC
Confidence            3457999999999999999999999998  699999 766665543  22222222211   124668999999999997


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeC-CCCCCccEEEEEEEecCCCCCChhHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS-PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA  471 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~-~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~  471 (518)
                      + ++++.||.+|+|+++|.+|+|.+||+.+. ++|.|.++++++.. +...+ +.+++++++.+....+..++.+.+++.
T Consensus       387 ~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~-~~~~v~~~~vv~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~i~~~  463 (502)
T TIGR01734       387 G-QLFYQGRLDFQIKLHGYRIELEDIEFNLR-QSSYIESAVVVPKYNKDHKV-EYLIAAIVPETEDFEKEFQLTKAIKKE  463 (502)
T ss_pred             C-EEEEeccccCeEEECcEEeCHHHHHHHHH-cCCCccEEEEEEEEcCCCCc-eEEEEEEEecccccccchhhHHHHHHH
Confidence            6 99999999999999999999999999998 99999999999865 33344 788899988775544555676778888


Q ss_pred             HHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHh
Q 010114          472 IQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK  509 (518)
Q Consensus       472 ~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~  509 (518)
                      ++++++++++|..+++++++|+|++||++|++|++++.
T Consensus       464 ~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       464 LKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             HhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence            99999999999999999999999999999999999875

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.5e-62  Score=512.98  Aligned_cols=474  Identities=19%  Similarity=0.180  Sum_probs=362.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEec-ccchh--HHHHHHHHHhcCceEEEe
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI-ADSFA--AREIATRLRVSKAKGIFT   77 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l-~~~~~--~~~i~~~l~~~~~~~ii~   77 (518)
                      +||+||.++++++|++|.+.+++||+|+++++|+++|++++|||+++|++++|+ ++..+  .+++.++++.++++++|+
T Consensus        56 ~Ty~el~~~v~~lA~~L~~~~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~  135 (631)
T PRK07769         56 LTWSQFGARNRAVGARLQQVTKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILT  135 (631)
T ss_pred             eeHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEE
Confidence            699999999999999998669999999999999999999999999999999999 45553  578999999999999999


Q ss_pred             chhhhccCCCCcchhhhhccCCC--ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEec
Q 010114           78 QDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS  155 (518)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  155 (518)
                      ++....      .+.+.......  ...++....             ..+   ...     .........++++++++||
T Consensus       136 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------------~~~---~~~-----~~~~~~~~~~~d~a~i~~T  188 (631)
T PRK07769        136 TTDSAE------GVRKFFRARPAKERPRVIAVDA-------------VPD---EVG-----ATWVPPEANEDTIAYLQYT  188 (631)
T ss_pred             ChHHHH------HHHHHHhhccccccceEEEccc-------------ccc---ccc-----cccCCCCCCCCCeEEEEeC
Confidence            875321      11111111110  001110000             000   000     0001112356899999999


Q ss_pred             cCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC-C--ChhHHHHHH
Q 010114          156 SGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS-P--LERSFGKFV  232 (518)
Q Consensus       156 SGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~-~--~~~~~~~~i  232 (518)
                      |||||.||||+++|.++..+.......+++..+|+++..+|++|.+|+...+.+++.|+++++.++. +  ++..+++.+
T Consensus       189 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i  268 (631)
T PRK07769        189 SGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIREL  268 (631)
T ss_pred             CCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHH
Confidence            9999999999999999998877766777888999999999999999998877778889999888642 3  678889999


Q ss_pred             HHcCc---cEEEechHHHHHHHhc---cc--CCCCCccchhhhhccCCCCCchhhhHhhhccc-----cCceeccccccc
Q 010114          233 QDAGV---TVLGTVPSLVKAWRNT---NC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTE  299 (518)
Q Consensus       233 ~~~~~---t~l~~~P~~~~~l~~~---~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-----~~~i~~~yg~tE  299 (518)
                      +++++   +.+.++|.++..++..   ..  ....+++++|.+++||+++++++.+++.+.+.     ...+++.||+||
T Consensus       269 ~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE  348 (631)
T PRK07769        269 ARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAE  348 (631)
T ss_pred             HhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhh
Confidence            99886   7889999988776643   11  12457889999999999999999999887652     245999999999


Q ss_pred             cceeEeecCCCCC--------------------------cccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cc
Q 010114          300 LSSAYIQGSLLQP--------------------------QAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FP  351 (518)
Q Consensus       300 ~~~~~~~~~~~~~--------------------------~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~  351 (518)
                      ++..+........                          ....++|+|.++..++|+| ++|.+++.|+  +|||++ ++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge--~GEl~v~gp  426 (631)
T PRK07769        349 ATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQ--IGEIWLHGN  426 (631)
T ss_pred             heeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCC--EEEEEecCC
Confidence            8765543322110                          0124789999999999999 6799999999  699999 77


Q ss_pred             cccCCccccccccccceeeeCCC-----------CCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHH
Q 010114          352 LYLGASDRLLNADHEEVYFRGMP-----------MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER  420 (518)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~  420 (518)
                      .++.+|+  .+.+.+...|....           ...+++||+|||+|+++ ||+|+++||.||+||++|++|+|.|||+
T Consensus       427 ~v~~GY~--~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~  503 (631)
T PRK07769        427 NIGTGYW--GKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEY  503 (631)
T ss_pred             Ccccccc--CChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHH
Confidence            7776643  33333433332210           11345899999999995 9999999999999999999999999999


Q ss_pred             HHhhcCcccce--eeEEEeCC-------------------CCCCccEEEEEEEecCCC-CCChhHHHHHHHHHHHhccCC
Q 010114          421 VCDQADESILE--TAAISVSP-------------------AGGGPEVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNP  478 (518)
Q Consensus       421 ~l~~~~~~v~~--~~vv~~~~-------------------~~~g~~~~~~~v~~~~~~-~~~~~~l~~~~~~~~~~~l~~  478 (518)
                      +|.+.||.|.+  ++|+++++                   +..| +.++++|++.++. ..+.++|.+++++.    |+.
T Consensus       504 ~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~g-e~~~a~v~~~~~~~~~~~~~l~~~~~~~----l~~  578 (631)
T PRK07769        504 TAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTS-EQLVIVAERAPGAHKLDPQPIADDIRAA----IAV  578 (631)
T ss_pred             HHHhccccccCCcEEEEEecccccccccccccccccccccCCCC-ccEEEEEEecCccccccHHHHHHHHHHH----HHH
Confidence            99734899998  89999888                   4566 8899999988753 45666677775554    443


Q ss_pred             -cc-ccceEEEec--CCCCCCCchhHHHHHHHHHhcc
Q 010114          479 -LF-KVSLVKVVP--EFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       479 -~~-~p~~i~~v~--~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                       ++ .|..+++++  +||+|++|||+|++|++.+.+.
T Consensus       579 ~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~  615 (631)
T PRK07769        579 RHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDG  615 (631)
T ss_pred             HcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcC
Confidence             44 368888987  7999999999999999988644

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.6e-62  Score=560.29  Aligned_cols=489  Identities=17%  Similarity=0.144  Sum_probs=376.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++.
T Consensus       271 lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~  350 (1389)
T TIGR03443       271 FTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIE  350 (1389)
T ss_pred             eeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEec
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhccCCCCcchhhhhccCC----Cc-eeeccccccCCCCCCcccccc--hhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           80 FILRGGRKFPLYSKVLGAAP----LK-AIVLPAIGNDVGIPLREQDLS--WKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      ...   ..............    .. ...+.... ..    ......  ..+.+.....  ...........+++++++
T Consensus       351 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i  420 (1389)
T TIGR03443       351 KAG---TLDQLVRDYIDKELELRTEIPALALQDDG-SL----VGGSLEGGETDVLAPYQA--LKDTPTGVVVGPDSNPTL  420 (1389)
T ss_pred             ccc---ccchhhhhhhhcccccccccceEEecccc-cc----cccccccccccccccccc--cccCCCCCcCCCCCceEE
Confidence            321   00111111111000    00 00010000 00    000000  0011100000  000111122356899999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCC--ChhHHHH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP--LERSFGK  230 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~--~~~~~~~  230 (518)
                      +|||||||.||||+++|+++++.+.+....+++.++|+++..+|++|+.++..++.+++.|+++++.+...  ++..+++
T Consensus       421 i~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~  500 (1389)
T TIGR03443       421 SFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAE  500 (1389)
T ss_pred             EECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHH
Confidence            99999999999999999999998887777888999999999999999999888999999999999876432  4678999


Q ss_pred             HHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC
Q 010114          231 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL  310 (518)
Q Consensus       231 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~  310 (518)
                      .|+++++|+++++|++++.|....   ...++++|.+++|||++++...+.+....++.+++|.||+||++..+......
T Consensus       501 ~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~  577 (1389)
T TIGR03443       501 WMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIP  577 (1389)
T ss_pred             HHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEcc
Confidence            999999999999999999887543   24578999999999999999988888777788999999999998654432211


Q ss_pred             C----------CcccCCCCcccccccEEEECCC--CCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCC--
Q 010114          311 Q----------PQAFGAFSTATMTAGLVILDEC--GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM--  375 (518)
Q Consensus       311 ~----------~~~~~~~g~~~~~~~~~i~~~~--g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~--  375 (518)
                      .          .....++|.|+++++++|+|++  +.+++.|+  .|||+| |+.+..+|  +.+++.+...|...++  
T Consensus       578 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~--~GEL~i~G~~v~~GY--~~~p~~t~~~f~~~~~~~  653 (1389)
T TIGR03443       578 SRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGE--VGEIYVRAGGLAEGY--LGLPELNAEKFVNNWFVD  653 (1389)
T ss_pred             ccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCC--ceEEEecccccchhc--CCChhHhhhhccCCcccC
Confidence            1          0124578999999999999954  57899998  699999 77777664  3344444444432211  


Q ss_pred             --------------------CCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEE
Q 010114          376 --------------------YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI  435 (518)
Q Consensus       376 --------------------~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv  435 (518)
                                          ..+++||+|||+|++++||+|+++||.||+||++|++|+|.+||.+|. +||.|.+++|+
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~-~~p~V~~a~v~  732 (1389)
T TIGR03443       654 PSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLS-QHPLVRENVTL  732 (1389)
T ss_pred             cccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHH-hCcchheeEEE
Confidence                                134689999999999999999999999999999999999999999997 89999999999


Q ss_pred             EeCCCCCCccEEEEEEEecCCC-CCC---------------------hhHHHHHHHHHHHhccCCccccceEEEecCCCC
Q 010114          436 SVSPAGGGPEVLVIFVVLKKGF-TSQ---------------------PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR  493 (518)
Q Consensus       436 ~~~~~~~g~~~~~~~v~~~~~~-~~~---------------------~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~  493 (518)
                      +.+++..+ +.+++|+++.++. ...                     ..+..+.++++++++|+.|++|..++++++||+
T Consensus       733 ~~~~~~~~-~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~  811 (1389)
T TIGR03443       733 VRRDKDEE-PTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPL  811 (1389)
T ss_pred             EeeCCCCC-eEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCC
Confidence            88877766 8899999876321 100                     012345677778899999999999999999999


Q ss_pred             CCCchhHHHHHHHHH
Q 010114          494 TASNKLLRRVLRDQI  508 (518)
Q Consensus       494 t~~GKv~R~~l~~~~  508 (518)
                      |++||++|++|+..+
T Consensus       812 t~~GKidr~~L~~~~  826 (1389)
T TIGR03443       812 NPNGKVDKPALPFPD  826 (1389)
T ss_pred             CCCccccHhhcCCCc
Confidence            999999999997543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=9.5e-62  Score=505.90  Aligned_cols=487  Identities=20%  Similarity=0.214  Sum_probs=363.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        40 ~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~  119 (579)
T PLN03102         40 FTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDR  119 (579)
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEECh
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccC-------CCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           80 FILRGGRKFPLYSKVLGAA-------PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      +..      +....+....       ....+.+......  ........++.++.......+............++++++
T Consensus       120 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i  191 (579)
T PLN03102        120 SFE------PLAREVLHLLSSEDSNLNLPVIFIHEIDFP--KRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISL  191 (579)
T ss_pred             hhH------HHHHHHHhhccccccccCceEEEecccccc--cCCcccccCHHHHHhccCCCCcccccccccCCCCCcEEE
Confidence            542      2222222111       1112222111100  001112344555544332211110000112346899999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFV  232 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i  232 (518)
                      +|||||||.||+|+++|.++............+...+++++.+|++|..++...+.++..|+++++.+ ..++..+++.|
T Consensus       192 l~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~-~~~~~~~~~~i  270 (579)
T PLN03102        192 NYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMR-HVTAPEIYKNI  270 (579)
T ss_pred             EeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeec-cCChHHHHHHH
Confidence            99999999999999999997555443333445667788999999999999877778888999998886 45678899999


Q ss_pred             HHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-
Q 010114          233 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-  311 (518)
Q Consensus       233 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-  311 (518)
                      +++++|++.++|+++..|.+.........++++.+++||+++++.+.+++.. + +.++++.||+||+++....+.... 
T Consensus       271 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~  348 (579)
T PLN03102        271 EMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATGPVLFCEWQDE  348 (579)
T ss_pred             HHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCccccccccccc
Confidence            9999999999999999998865434444567888999999999998888764 4 678999999999986433221110 


Q ss_pred             ------------CcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCC
Q 010114          312 ------------PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYK  377 (518)
Q Consensus       312 ------------~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (518)
                                  ....+..+.+.+  .+.+.+ +.+++++.+....|||++ ++..+.+|.  .++..+...+       
T Consensus       349 ~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~--~~~~~t~~~f-------  417 (579)
T PLN03102        349 WNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYL--KNPKATSEAF-------  417 (579)
T ss_pred             cccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcchhhhhc--CChhhhHhhh-------
Confidence                        011222223333  455666 456667653212599999 766665532  2333223222       


Q ss_pred             CceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC
Q 010114          378 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF  457 (518)
Q Consensus       378 ~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~  457 (518)
                      .++||+|||+|++|+||++++.||.+|+|+.+|++|+|.+||+++. +||.|.+++|++.+++..| +.++++|++.++.
T Consensus       418 ~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~  495 (579)
T PLN03102        418 KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLY-KYPKVLETAVVAMPHPTWG-ETPCAFVVLEKGE  495 (579)
T ss_pred             ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHH-hCCCcceeEEEeccCcccc-ceeEEEEEecCcc
Confidence            2469999999999999999999999999999999999999999998 8999999999999998888 8999999987654


Q ss_pred             CCChhH------HHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          458 TSQPDK------LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       458 ~~~~~~------l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      ..+...      -.+.+++.++++|++|++|..+++++++|+|++||++|++|++++.+.
T Consensus       496 ~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~~  555 (579)
T PLN03102        496 TTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGL  555 (579)
T ss_pred             cccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHHh
Confidence            322111      124566668889999999999999999999999999999999988653

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.2e-61  Score=499.26  Aligned_cols=471  Identities=20%  Similarity=0.231  Sum_probs=381.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|+++++++++||+++|++++|+++..+..++..+++.++++++|+++
T Consensus        29 ~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~  108 (504)
T PRK07514         29 YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDP  108 (504)
T ss_pred             EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ..............+.....         .....+.+....     .+..........+++++++||||||
T Consensus       109 ~~~------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~i~~TSGtT  168 (504)
T PRK07514        109 ANF------AWLSKIAAAAGAPHVETLDA---------DGTGSLLEAAAA-----APDDFETVPRGADDLAAILYTSGTT  168 (504)
T ss_pred             chh------HHHHHhhhccCCceEEEecC---------CCcccHHHhhhh-----cCcccCcccCCCCCeEEEEECCCCC
Confidence            432      12222211111111111100         000111111111     0111222334578999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      |.||+|.++|.++...+......+++.++|++++..|++|..++.. ++.+++.|+++++.+ ..++..+++.+.  ++|
T Consensus       169 G~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~--~~t  245 (504)
T PRK07514        169 GRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLP-KFDPDAVLALMP--RAT  245 (504)
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECC-CCCHHHHHHHHH--hhe
Confidence            9999999999999988877667778899999999999999999865 788999999999876 567888888883  799


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCC
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF  318 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~  318 (518)
                      .+.++|.++..+++.....+..++++|.+++||+++++++.+.+.+.+ +.++++.||+||++..... ........+++
T Consensus       246 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~-~~~~~~~~~~~  323 (504)
T PRK07514        246 VMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMNTSN-PYDGERRAGTV  323 (504)
T ss_pred             eeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecccccccccccC-CccccccCccc
Confidence            999999999999987766667788999999999999999999998776 5789999999998865432 22233445789


Q ss_pred             CcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114          319 STATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  396 (518)
Q Consensus       319 g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  396 (518)
                      |.|++++.++|+| +++.+++.|+  .|||++ ++.+..+|.  .+...+...+      ..++||+|||+++++++|.+
T Consensus       324 G~~~~~~~v~i~d~~~~~~~~~g~--~Gel~i~~~~~~~gy~--~~~~~~~~~~------~~~~~~~TGDl~~~~~~g~~  393 (504)
T PRK07514        324 GFPLPGVSLRVTDPETGAELPPGE--IGMIEVKGPNVFKGYW--RMPEKTAEEF------RADGFFITGDLGKIDERGYV  393 (504)
T ss_pred             ccCCCCcEEEEEECCCCCCCCCCC--ceEEEEecCCcccccc--CCchhhhhhc------ccCCCeeecceEEEcCCccE
Confidence            9999999999999 9999999998  599999 666665532  2222222222      23569999999999999999


Q ss_pred             EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      ++.||.+|+++++|.+|+|.+||+++. .+++|.+++|++.+++..+ +.+++++++.++...+.+++.+.    +++++
T Consensus       394 ~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~----~~~~l  467 (504)
T PRK07514        394 HIVGRGKDLIISGGYNVYPKEVEGEID-ELPGVVESAVIGVPHPDFG-EGVTAVVVPKPGAALDEAAILAA----LKGRL  467 (504)
T ss_pred             EEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEeCCCCCcC-ceEEEEEEECCCCCCCHHHHHHH----HHhhc
Confidence            999999999999999999999999997 8999999999999888777 88999999877655555555554    66778


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      +++++|..+++++++|+|++||++|++|++++++..
T Consensus       468 ~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~~  503 (504)
T PRK07514        468 ARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADLF  503 (504)
T ss_pred             ccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhhc
Confidence            999999999999999999999999999999988653

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1.3e-61  Score=503.40  Aligned_cols=487  Identities=21%  Similarity=0.239  Sum_probs=383.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++++++
T Consensus        50 ~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~  129 (547)
T PRK06087         50 YTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPT  129 (547)
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEec
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999976


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .... ....+.+............++......    ......++.+++.....     .........+++++++||||||
T Consensus       130 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTT  199 (547)
T PRK06087        130 LFKQ-TRPVDLILPLQNQLPQLQQIVGVDKLA----PATSSLSLSQIIADYEP-----LTTAITTHGDELAAVLFTSGTE  199 (547)
T ss_pred             cccc-ccHHHHHHHHHhhCCCCcEEEEeCCcC----CCcCccCHHHHhccCCc-----ccCCCCCCCCCeEEEEeCCCCC
Confidence            3210 011111111112111111111111110    01122244454433221     0112234568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      |.||+|.++|.+++.........+++.++|++++..|++|.+++.. ++.+++.|+++++.+ ..++..+++.++++++|
T Consensus       200 G~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t  278 (547)
T PRK06087        200 GLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD-IFTPDACLALLEQQRCT  278 (547)
T ss_pred             CCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCC
Confidence            9999999999999888777666778899999999999999999865 888899999998876 56789999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-CcccCC
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFGA  317 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~~~~~  317 (518)
                      .++++|..+..+++.......+++++|.+++||+++++++.+.+.+.  ++++++.||+||++.......... ....++
T Consensus       279 ~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~  356 (547)
T PRK06087        279 CMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPLSRFMHT  356 (547)
T ss_pred             EEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccCCccccCCCcchhhcCCc
Confidence            99988887777777665566678899999999999999998877653  688999999999987655443322 223457


Q ss_pred             CCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114          318 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  396 (518)
Q Consensus       318 ~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  396 (518)
                      +|.|++++.++++|+++.+++.|+  .||+++ ++..+.+|.  .+.+.+...+      ..++||+|||+++++++|++
T Consensus       357 ~G~~~~~~~~~i~d~~~~~~~~g~--~Gel~v~g~~~~~gy~--~~~~~~~~~~------~~~g~~~TGDl~~~~~~g~l  426 (547)
T PRK06087        357 DGYAAAGVEIKVVDEARKTLPPGC--EGEEASRGPNVFMGYL--DEPELTARAL------DEEGWYYSGDLCRMDEAGYI  426 (547)
T ss_pred             CCccCCCceEEEEcCCCCCCcCCC--cceEEEeccccccccc--CCHHHHHHHh------CCCCCcCcCceEEECCCCCE
Confidence            899999999999999999999998  699999 666555432  2222222111      34579999999999999999


Q ss_pred             EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCC-CCCChhHHHHHHHHHHHhc
Q 010114          397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG-FTSQPDKLKMIFSKAIQSK  475 (518)
Q Consensus       397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~-~~~~~~~l~~~~~~~~~~~  475 (518)
                      ++.||.+|+|+.+|.+|+|.+||++|. .+|+|.++++++.+++..| +.+++++++.+. ...+.+++.+++.   .+.
T Consensus       427 ~i~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~  501 (547)
T PRK06087        427 KITGRKKDIIVRGGENISSREVEDILL-QHPKIHDACVVAMPDERLG-ERSCAYVVLKAPHHSLTLEEVVAFFS---RKR  501 (547)
T ss_pred             EEEecchhhhhcCCEEECHHHHHHHHH-hCCCeeEEEEEecCCCCcC-ceEEEEEEECCCCCCCCHHHHHHHHH---hcc
Confidence            999999999999999999999999997 8999999999999988878 899999998763 2334444444432   368


Q ss_pred             cCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccccc
Q 010114          476 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR  515 (518)
Q Consensus       476 l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~~  515 (518)
                      ++++++|..|.++++||+|++||++|+.|++++.+++...
T Consensus       502 l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~~~~  541 (547)
T PRK06087        502 VAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRLTQD  541 (547)
T ss_pred             ccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999886554

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-61  Score=502.29  Aligned_cols=481  Identities=22%  Similarity=0.222  Sum_probs=385.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||.||.++++++|++|.+. +++||+|+++++|+++++++++||+++|++++|+++..+..++..+++.++++++|+++
T Consensus        43 ~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~  122 (542)
T PRK07786         43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEA  122 (542)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ...............++...+.     ...+..++.+++.....     .........+++++++||||||
T Consensus       123 ~~~------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTT  186 (542)
T PRK07786        123 ALA------PVATAVRDIVPLLSTVVVAGGS-----SDDSVLGYEDLLAEAGP-----AHAPVDIPNDSPALIMYTSGTT  186 (542)
T ss_pred             chH------HHHHHhhhccCccceEEEecCC-----CcccccCHHHHhhccCC-----CCCCCCCCCCCeEEEEeCCCCC
Confidence            532      1111111111111111111110     01123455565443222     1112234457899999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccC-CCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC-CCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDL-KVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~  237 (518)
                      |.||+|.++|.++...+......+++ ..++++++..|++|.+|+..++.++..|+++++.+. ..++..+++.++++++
T Consensus       187 G~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~  266 (542)
T PRK07786        187 GRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKV  266 (542)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCC
Confidence            99999999999998887766666666 677899999999999999779999999999998653 4578899999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-CcccC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFG  316 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~~~~  316 (518)
                      |.++++|+++..+++.......+ .++|.+++||+++++++.+++.+.+++.++++.||+||++.+.+...... ....+
T Consensus       267 t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~  345 (542)
T PRK07786        267 TGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLG  345 (542)
T ss_pred             eEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCC
Confidence            99999999999998875544333 37999999999999999999999888889999999999987655433322 23457


Q ss_pred             CCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCce
Q 010114          317 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY  395 (518)
Q Consensus       317 ~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  395 (518)
                      ++|.|++++.++|+|+++.+++.|+  .|||++ ++....+|  +.+...+...+       ..+||+|||+++++++|.
T Consensus       346 ~~G~~~~~~~~~i~d~~~~~~~~g~--~Gel~v~g~~~~~gy--~~~~~~~~~~f-------~~~~~~TGDl~~~~~~g~  414 (542)
T PRK07786        346 SVGKVIPTVAARVVDENMNDVPVGE--VGEIVYRAPTLMSGY--WNNPEATAEAF-------AGGWFHSGDLVRQDEEGY  414 (542)
T ss_pred             CccccCCCceEEEECCCCCCCcCCC--ceEEEEEChhhhhhh--cCCHHHHHHHh-------hCCcccccceEEEcCCce
Confidence            8999999999999999999999998  699999 66655543  22232222222       246999999999999999


Q ss_pred             EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCC-CChhHHHHHHHHHHHh
Q 010114          396 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQS  474 (518)
Q Consensus       396 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~~~  474 (518)
                      +++.||.+|+|+++|.+|++.+||++|. ++|.|.+++|++.+++..+ +.+.+++++.++.. ...    +.+.+.+.+
T Consensus       415 ~~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~----~~l~~~l~~  488 (542)
T PRK07786        415 VWVVDRKKDMIISGGENIYCAEVENVLA-SHPDIVEVAVIGRADEKWG-EVPVAVAAVRNDDAALTL----EDLAEFLTD  488 (542)
T ss_pred             EEEEecccceEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCcccC-ceEEEEEEECCCCCCCCH----HHHHHHHHh
Confidence            9999999999999999999999999997 8999999999998887777 88888888775432 222    345555778


Q ss_pred             ccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccccc
Q 010114          475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR  515 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~~  515 (518)
                      ++++|++|..++++++||+|++||++|++|++++.+.....
T Consensus       489 ~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~  529 (542)
T PRK07786        489 RLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVNVE  529 (542)
T ss_pred             hccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhchh
Confidence            89999999999999999999999999999999998776544

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-61  Score=504.30  Aligned_cols=491  Identities=16%  Similarity=0.167  Sum_probs=381.9

Q ss_pred             CCHHHHHHHHHHHHHHHhh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~-~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.+++.++|++|.+ . +++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++|++
T Consensus        39 ~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~  118 (576)
T PRK05620         39 TTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVAD  118 (576)
T ss_pred             EeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEC
Confidence            5999999999999999986 6 9999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccCCCCcchhhhhccCCCce-eeccccccC----CCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEE
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKA-IVLPAIGND----VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL  153 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  153 (518)
                      +...      ..+........... ++.......    ...+......+|.++......     ........++++++++
T Consensus       119 ~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~a~i~  187 (576)
T PRK05620        119 PRLA------EQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRST-----VYDWPELDETTAAAIC  187 (576)
T ss_pred             hhhH------HHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcCCC-----cCCCCCCCccceeEEE
Confidence            7532      22222222222211 111111100    001112233456776653221     1112234568999999


Q ss_pred             eccCCCCCCceEEeccchhHHHhhh--ccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHH
Q 010114          154 FSSGTTGEPKAIPWTQLSSIRCTAE--GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKF  231 (518)
Q Consensus       154 ~TSGtTG~pK~v~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~  231 (518)
                      |||||||.||+|.++|.++......  ....+++..++++++.+|++|.+++...+.++..|+++++.+...++..+++.
T Consensus       188 ~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~  267 (576)
T PRK05620        188 YSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKI  267 (576)
T ss_pred             ECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHH
Confidence            9999999999999999998654432  22346788899999999999999988788899999999988766788999999


Q ss_pred             HHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC
Q 010114          232 VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ  311 (518)
Q Consensus       232 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~  311 (518)
                      ++++++|.++++|+++..++........+..++|.++++|+++++++.+.+.+.+ +.++++.||+||++..........
T Consensus       268 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~  346 (576)
T PRK05620        268 IATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETSPVGTVARPPS  346 (576)
T ss_pred             HHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh-CCceeeeccccccccceeeeccCC
Confidence            9999999999999999988765433344456899999999999999999887766 578999999999987544333211


Q ss_pred             -------CcccCCCCcccccccEEEECCCCCCCCC--CCCeeeeeee-cccccCCcccccccccc----ceeeeCCCC--
Q 010114          312 -------PQAFGAFSTATMTAGLVILDECGVPYPD--DQPCVGEVGL-FPLYLGASDRLLNADHE----EVYFRGMPM--  375 (518)
Q Consensus       312 -------~~~~~~~g~~~~~~~~~i~~~~g~~~~~--~~~~~Gel~v-~~~~~~~~~~~~~~~~~----~~~~~~~~~--  375 (518)
                             .....++|++.++++++++|+ |..++.  +.  .|||++ ++.++.+|+  .+...+    ...++..+.  
T Consensus       347 ~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~--~Gel~v~g~~~~~gY~--~~~~~t~~~~~~~f~~~~~~~  421 (576)
T PRK05620        347 GVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRN--EGEIQVRGNWVTASYY--HSPTEEGGGAASTFRGEDVED  421 (576)
T ss_pred             ccccccccccccccCCcCCceeEEEecC-CccccCCCCC--ceEEEEEcCccccccc--CCccccccccccccccccchh
Confidence                   012347899999999999997 776653  44  699999 666665532  233322    222222111  


Q ss_pred             ----CCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEE
Q 010114          376 ----YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV  451 (518)
Q Consensus       376 ----~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v  451 (518)
                          ...++||+|||++++++||.+++.||.+|+++.+|.+|+|.+||++|. +||.|.+++|++.+++..| +.+++++
T Consensus       422 ~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~-~~p~v~~~~vv~~~~~~~g-~~~~a~v  499 (576)
T PRK05620        422 ANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIM-AAPEVVECAVIGYPDDKWG-ERPLAVT  499 (576)
T ss_pred             hhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHh-cCCCceEEEEEeccCCCcC-ceeEEEE
Confidence                234579999999999999999999999999999999999999999998 8999999999999998888 7888888


Q ss_pred             EecCCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          452 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       452 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      ++.++...+. ...+.+++++.++|++++.|..|++++++|+|++||++|++|++++++.
T Consensus       500 ~~~~~~~~~~-~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        500 VLAPGIEPTR-ETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             EecCCCCccc-ccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHHHhcC
Confidence            8877543321 2234566668889999999999999999999999999999999999864

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-61  Score=500.76  Aligned_cols=475  Identities=20%  Similarity=0.187  Sum_probs=375.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|+++++++++||+++|++++++++.++.+++.++++.++++.+++++
T Consensus        33 ~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~  112 (528)
T PRK07470         33 WTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHA  112 (528)
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      .......+.......++.....       .....+.+++.....    ..........+++++++||||||
T Consensus       113 ~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTT  175 (528)
T PRK07470        113 DFP------EHAAAVRAASPDLTHVVAIGGA-------RAGLDYEALVARHLG----ARVANAAVDHDDPCWFFFTSGTT  175 (528)
T ss_pred             hhH------HHHHHHHhhCCcCceEEEeCCC-------cccccHHHHHhcCCC----CCCCcccCCCCCeEEEEeCCCCC
Confidence            532      1111111111111111111000       012344544432211    01112234568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhcccc--ccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC-CCChhHHHHHHHHcC
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAG  236 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~  236 (518)
                      |.||+|+++|.++...+......  .+..+.|+++..+|++|.+++..++ .++.|++.++.+. ..++..+++.+++++
T Consensus       176 G~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~  254 (528)
T PRK07470        176 GRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVLLPSERFDPAEVWALVERHR  254 (528)
T ss_pred             CCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcC
Confidence            99999999999987654432222  1467789999999999999987654 5677888776653 457889999999999


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC------
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL------  310 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~------  310 (518)
                      +|.+.++|++++.+.+.......+++++|.++++|+++++...+++.+.+ +..+++.||+||++..+......      
T Consensus       255 ~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  333 (528)
T PRK07470        255 VTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGLGEVTGNITVLPPALHDAED  333 (528)
T ss_pred             CeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCCcccCCceeecchhhccccc
Confidence            99999999999999887766667789999999999999999988887766 57799999999998755433221      


Q ss_pred             -CCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114          311 -QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII  388 (518)
Q Consensus       311 -~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~  388 (518)
                       .....+++|.|+++++++++|++|.+++.|+  .|||++ ++....+|.  .++..+...+       .++||+|||++
T Consensus       334 ~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~--~Gel~i~~~~~~~gy~--~~~~~~~~~~-------~~~~~~TGDl~  402 (528)
T PRK07470        334 GPDARIGTCGFERTGMEVQIQDDEGRELPPGE--TGEICVIGPAVFAGYY--NNPEANAKAF-------RDGWFRTGDLG  402 (528)
T ss_pred             cccceeeccCcccCCcEEEEECCCCCCCCCCC--ceEEEEeCCccchhhc--CCHHHHHhhh-------cCCcEecceeE
Confidence             1234578899999999999999999999998  699999 665555432  2222222222       24699999999


Q ss_pred             EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114          389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF  468 (518)
Q Consensus       389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~  468 (518)
                      ++++||++++.||.+|+++++|.+|+|.+||+++. ++|.|.+++|++.+++..| +.++++++..++...+.+++.++ 
T Consensus       403 ~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  479 (528)
T PRK07470        403 HLDARGFLYITGRASDMYISGGSNVYPREIEEKLL-THPAVSEVAVLGVPDPVWG-EVGVAVCVARDGAPVDEAELLAW-  479 (528)
T ss_pred             EEccCCeEEEeCCccceEEeCCEEECHHHHHHHHH-hCCCceEEEEEeccCcccC-ceeEEEEEECCCCCCCHHHHHHH-
Confidence            99999999999999999999999999999999998 8999999999999988777 88888888877655565555555 


Q ss_pred             HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                         +.++|+++++|..++++++||+|++||++|+.|++++.+.
T Consensus       480 ---l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~  519 (528)
T PRK07470        480 ---LDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER  519 (528)
T ss_pred             ---HHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhc
Confidence               6678899999999999999999999999999999987653

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.9e-62  Score=594.16  Aligned_cols=466  Identities=16%  Similarity=0.175  Sum_probs=387.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+++
T Consensus      3121 lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~ 3200 (3956)
T PRK12467       3121 LSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQA 3200 (3956)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEech
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...+...         .......+.+.                  +.....    ...........++++++++||||||
T Consensus      3201 ~~~~~~~---------~~~~~~~~~~~------------------~~~~~~----~~~~~~~~~~~~~~~a~ii~TSGST 3249 (3956)
T PRK12467       3201 HLLEQLP---------APAGDTALTLD------------------RLDLNG----YSENNPSTRVMGENLAYVIYTSGST 3249 (3956)
T ss_pred             hhhhhcc---------cccCCceeeec------------------chhhcc----cCCCCCcccCCCCceEEEEEccCCC
Confidence            5431110         00000011110                  000000    0111112234678999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC-CChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS-PLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~~i~~~~~t  238 (518)
                      |.||||+++|+++.+.+......++++++|+++.+.|++|+.+...++.+|+.|+++++.+.. .++..+++.|+++++|
T Consensus      3250 G~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt 3329 (3956)
T PRK12467       3250 GKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRIS 3329 (3956)
T ss_pred             CCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCE
Confidence            999999999999999998888888999999999999999999988899999999999998732 5788999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC----Ccc
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----PQA  314 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----~~~  314 (518)
                      ++.++|++++.+++..  ...++++||.+++|||++++++.+.+.+.+++.+++|.||+||+++.++......    ...
T Consensus      3330 ~~~~~Ps~l~~l~~~~--~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~ 3407 (3956)
T PRK12467       3330 IACFPPAYLQQFAEDA--GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAP 3407 (3956)
T ss_pred             EEEcCHHHHHHHHhcc--cccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCC
Confidence            9999999999998754  3456789999999999999999999988777788999999999987655433221    123


Q ss_pred             cCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCC-CCCceeccccceEEEec
Q 010114          315 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       315 ~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~TGD~~~~~~  392 (518)
                      ..++|+|+++++++|+|++++++|.|+  +|||+| ++++..+|  +.+++.+...|..++. ..+.+||+|||+|++++
T Consensus      3408 ~~~iG~p~~~~~~~v~d~~~~~vp~G~--~GEL~i~G~~v~~GY--~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~ 3483 (3956)
T PRK12467       3408 YAPIGRPVAGRSIYVLDGQLNPVPVGV--AGELYIGGVGLARGY--HQRPSLTAERFVADPFSGSGGRLYRTGDLARYRA 3483 (3956)
T ss_pred             CCCCccccCCCEEEEECCCCCCCCCCC--CceEEEcchhhhhhc--cCCcccchhhccCCCCCCCCceeeccchhheecC
Confidence            468999999999999999999999999  699999 77777664  4455666666766555 56889999999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      ||+|+++||.||+||++|++|+|.|||++|. ++|+|.+++|++..+ ..+ +.+++|++........    .+.+++++
T Consensus      3484 dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~-~~p~V~~a~v~~~~~-~~~-~~lva~v~~~~~~~~~----~~~l~~~l 3556 (3956)
T PRK12467       3484 DGVIEYLGRIDHQVKIRGFRIELGEIEARLL-QHPSVREAVVLARDG-AGG-KQLVAYVVPADPQGDW----RETLRDHL 3556 (3956)
T ss_pred             CCcEEEeccccceEeeceEeecHHHHHHHHh-hCcccceEEEEEecC-CCC-cEEEEEEeCCCCCccc----HHHHHHHH
Confidence            9999999999999999999999999999997 999999999998754 345 7899999987643333    34455567


Q ss_pred             HhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          473 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       473 ~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      .++|+.|++|..|+++++||+|++||++|++|++...+
T Consensus      3557 ~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467       3557 AASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred             hccCChhhCCCeeeeeccCCCCCCCccchhhcCCCCcc
Confidence            88999999999999999999999999999999876543

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=3.8e-61  Score=498.05  Aligned_cols=471  Identities=20%  Similarity=0.195  Sum_probs=374.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|..|.+. +++|++|+++++|+++++++++||+++|++++|+++.++.+++..+++.+++++++++.
T Consensus        47 ~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~  126 (542)
T PRK06155         47 WTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEA  126 (542)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEECh
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccC-CCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAA-PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ...+      .+....... .....+.......  .. ........++..      ...........++++++++|||||
T Consensus       127 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~il~TSGT  191 (542)
T PRK06155        127 ALLA------ALEAADPGDLPLPAVWLLDAPAS--VS-VPAGWSTAPLPP------LDAPAPAAAVQPGDTAAILYTSGT  191 (542)
T ss_pred             hhHH------HHHHhcccccCcceEEEecCccc--cc-cccccchhhhcc------cCCCCCCCCCCCCCeEEEEECCCC
Confidence            5432      111111111 1111111111000  00 000000001100      001111223456899999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      ||.||+|+++|.++..........+++++++++++.+|++|..++..++.+++.|+++++.+ ..++..+++.|+++++|
T Consensus       192 TG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t  270 (542)
T PRK06155        192 TGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEP-RFSASGFWPAVRRHGAT  270 (542)
T ss_pred             CCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeC-CCCHHHHHHHHHHhCCc
Confidence            99999999999999887766666778899999999999999999988899999999998876 56789999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCC
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF  318 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~  318 (518)
                      .+.++|+++..+.+.........+++|.++.+|  +++++.+.+.+.+ +.++++.||+||++.++....  .....+.+
T Consensus       271 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~--~~~~~~~v  345 (542)
T PRK06155        271 VTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETNFVIAVTH--GSQRPGSM  345 (542)
T ss_pred             EEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccCccccCCC--CCCCCCCc
Confidence            999999999999888766666678899888776  4677888887766 678999999999987654432  23456789


Q ss_pred             CcccccccEEEECCCCCCCCCCCCeeeeeee-ccc---ccCCccccccccccceeeeCCCCCCCceeccccceEEEecCc
Q 010114          319 STATMTAGLVILDECGVPYPDDQPCVGEVGL-FPL---YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG  394 (518)
Q Consensus       319 g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g  394 (518)
                      |.+.+++.++|+|+++.+++.|+  .|||++ ++.   .+.+|.  .++..+...+       .++||+|||+|++++||
T Consensus       346 G~~~~~~~~~i~d~~~~~~~~g~--~Gei~v~~~~~~~~~~GY~--~~~~~~~~~~-------~~~~~~TGD~~~~~~dG  414 (542)
T PRK06155        346 GRLAPGFEARVVDEHDQELPDGE--PGELLLRADEPFAFATGYF--GMPEKTVEAW-------RNLWFHTGDRVVRDADG  414 (542)
T ss_pred             CccCCCceEEEECCCCCCCCCCC--ceEEEEecCCccccchhhc--CCHHHHHHhh-------cCCcEeccceEEEcCCc
Confidence            99999999999999999999998  699999 542   333321  1222222212       25799999999999999


Q ss_pred             eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114          395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS  474 (518)
Q Consensus       395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~  474 (518)
                      ++++.||.+|+++++|.+|+|.+||+++. ++|+|.+++|++++++..+ +.+.+++++.++...+..++.++    +.+
T Consensus       415 ~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~v~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~----~~~  488 (542)
T PRK06155        415 WFRFVDRIKDAIRRRGENISSFEVEQVLL-SHPAVAAAAVFPVPSELGE-DEVMAAVVLRDGTALEPVALVRH----CEP  488 (542)
T ss_pred             eEEEEecCCCEEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeecccccC-ceEEEEEEECCCCCCCHHHHHHH----HHh
Confidence            99999999999999999999999999997 8999999999999988777 78888888877655566555555    667


Q ss_pred             ccCCccccceEEEecCCCCCCCchhHHHHHHHHHh
Q 010114          475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK  509 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~  509 (518)
                      +++++++|..|++++++|+|++||++|++|++++-
T Consensus       489 ~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~  523 (542)
T PRK06155        489 RLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV  523 (542)
T ss_pred             hCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence            88999999999999999999999999999998764

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-61  Score=507.50  Aligned_cols=484  Identities=13%  Similarity=0.106  Sum_probs=359.7

Q ss_pred             CCHHHHHHHHHHHHHHHhh---c-cCCC-----------CEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHH
Q 010114            1 MTYKELREQVMLVANALDT---M-FSKG-----------DAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT   65 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~---~-v~~g-----------~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~   65 (518)
                      +||+|+.++++++|++|.+   . +++|           |+|+|+++|++||+++++||+++|++.+|+++.++++++.+
T Consensus        92 ~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~  171 (746)
T PTZ00342         92 ITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVD  171 (746)
T ss_pred             eeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHH
Confidence            6999999999999999996   5 9998           99999999999999999999999999999999999999999


Q ss_pred             HHHhcCceEEEechhhhccCCCCcchhhhhccCCCc-eeeccccccCC------------------CCCC----------
Q 010114           66 RLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDV------------------GIPL----------  116 (518)
Q Consensus        66 ~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------------~~~~----------  116 (518)
                      +|++++++++|++.+..      +.+.......+.. .+++.+.....                  ....          
T Consensus       172 il~~s~~~~lv~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (746)
T PTZ00342        172 ILNETKLEWLCLDLDLV------EGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGND  245 (746)
T ss_pred             HHhcCCCCEEEEcHHHH------HHHHHhhccCCCceEEEEECCCCcccccccccccccccccccccccccccccccccc
Confidence            99999999999986543      1222222222221 12211110000                  0000          


Q ss_pred             ---------------------------------cccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCCCCCc
Q 010114          117 ---------------------------------REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK  163 (518)
Q Consensus       117 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK  163 (518)
                                                       ......+.++.....     .........+++++.|+|||||||.||
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~dd~a~IiYTSGTTG~PK  320 (746)
T PTZ00342        246 LSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT-----TNYKIQNEDPDFITSIVYTSGTSGKPK  320 (746)
T ss_pred             cccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc-----cCCCCCCCCccceEEEEEcCCCCCCCC
Confidence                                             000011222221110     111122345799999999999999999


Q ss_pred             eEEeccchhHHHhhhcccc--ccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEE
Q 010114          164 AIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG  241 (518)
Q Consensus       164 ~v~~s~~~~~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~  241 (518)
                      ||++||+++++.+......  ......|++++.+|++|++++...+.+++.|+++++.+.  ++..+++.|++++||+++
T Consensus       321 GVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~--~~~~l~~di~~~~pT~~~  398 (746)
T PTZ00342        321 GVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSK--DINYFSKDIYNSKGNILA  398 (746)
T ss_pred             EEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHhCCcEEE
Confidence            9999999999887654322  123356899999999999999877888999999998764  678999999999999999


Q ss_pred             echHHHHHHHhc--------ccCCC----------------------------------CCccchhhhhccCCCCCchhh
Q 010114          242 TVPSLVKAWRNT--------NCLEG----------------------------------LDWTKIRSFASTGETSNVDDD  279 (518)
Q Consensus       242 ~~P~~~~~l~~~--------~~~~~----------------------------------~~l~~lr~i~~~Ge~l~~~~~  279 (518)
                      ++|.+++.+.+.        .....                                  .-.+++|.+++||+++++++.
T Consensus       399 ~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~  478 (746)
T PTZ00342        399 GVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIA  478 (746)
T ss_pred             chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHH
Confidence            999999998652        10000                                  001589999999999999999


Q ss_pred             hHhhhccccCceeccccccccceeEeecCCCCCcccCCCCccc-ccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCC
Q 010114          280 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGA  356 (518)
Q Consensus       280 ~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~  356 (518)
                      +++...+ +++++++||+||+++..+.... .....+++|.|+ |+++++|+| +++.....+.  .|||++ ++.++.+
T Consensus       479 ~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~-~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~--~GEl~vrGp~v~~G  554 (746)
T PTZ00342        479 EELSVLL-NVNYYQGYGLTETTGPIFVQHA-DDNNTESIGGPISPNTKYKVRTWETYKATDTLP--KGELLIKSDSIFSG  554 (746)
T ss_pred             HHHHHhc-CCCEEEeeccCcccceeeeccC-CCCCcccccCcCCCcEEEEEecccccccCCCCC--ceEEEEecCccccc
Confidence            9998765 6889999999999765554433 334678999998 999999998 4333333333  599999 7777766


Q ss_pred             ccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeee-CceecchhHHHHHHhhcCcccceeeEE
Q 010114          357 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAI  435 (518)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~~v~~~~vv  435 (518)
                      |  +.+++.+...+      ..+|||+|||+|++|+||+|+++||.+|+||+ +|++|+|.+||+++. +||.|.+++|+
T Consensus       555 Y--~~~pe~T~~~f------~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~-~~p~V~~~~Vv  625 (746)
T PTZ00342        555 Y--FLEKEQTKNAF------TEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYS-QISFINFCVVY  625 (746)
T ss_pred             c--cCChhhhhhhc------CcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHh-cCCCccEEEEE
Confidence            4  34444444444      34679999999999999999999999999995 799999999999997 99999999999


Q ss_pred             EeCCCCCCccEEEEEEEecCCC----------------C-CC-----------hhHHHHHHHHHH-----HhccCCcccc
Q 010114          436 SVSPAGGGPEVLVIFVVLKKGF----------------T-SQ-----------PDKLKMIFSKAI-----QSKLNPLFKV  482 (518)
Q Consensus       436 ~~~~~~~g~~~~~~~v~~~~~~----------------~-~~-----------~~~l~~~~~~~~-----~~~l~~~~~p  482 (518)
                      +.+..    ..++|+|++..+.                . .+           ..++.+++.+.+     +..|+.+.++
T Consensus       626 G~~~~----~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i  701 (746)
T PTZ00342        626 GDDSM----DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNII  701 (746)
T ss_pred             ccCCc----cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceee
Confidence            85321    3578888776410                0 01           112333333333     3479999999


Q ss_pred             ceEEEec-CCC----CCCCchhHHHHHHHHHhccccc
Q 010114          483 SLVKVVP-EFP----RTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       483 ~~i~~v~-~~P----~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      ..|.+++ .+-    .|+|.|+.|..+.+.|+..|+.
T Consensus       702 ~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~~  738 (746)
T PTZ00342        702 NDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFIDQ  738 (746)
T ss_pred             eeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHHH
Confidence            9999885 332    8999999999999999976654

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.4e-61  Score=492.96  Aligned_cols=465  Identities=20%  Similarity=0.191  Sum_probs=376.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||.||.+++.++|.+|.+. +++|++|+++++|+++++++++||+++|++++|+++.++..++..+++.++++.+++++
T Consensus        28 ~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~  107 (497)
T PRK06145         28 ISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDE  107 (497)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .....          ... ......+... ..         ..+..+ .....    .........++++++++||||||
T Consensus       108 ~~~~~----------~~~-~~~~~~~~~~-~~---------~~~~~~-~~~~~----~~~~~~~~~~~~~a~i~~TSGTT  161 (497)
T PRK06145        108 EFDAI----------VAL-ETPKIVIDAA-AQ---------ADSRRL-AQGGL----EIPPQAAVAPTDLVRLMYTSGTT  161 (497)
T ss_pred             chhhh----------hhc-ccceEEecCc-cc---------chhHHH-hccCC----CCCCCCCCCccceEEEEeCCCCC
Confidence            43210          000 0011111100 00         001111 10000    00111223568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      |.||+|+++|.++..........+++..+++++...|++|.+++.. .+.+++.|+++++.+ ..++..+++.++++++|
T Consensus       162 G~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t  240 (497)
T PRK06145        162 DRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHR-EFDPEAVLAAIERHRLT  240 (497)
T ss_pred             CCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECC-cCCHHHHHHHHHHhCCe
Confidence            9999999999999877665556678899999999999999999865 677889999998876 57889999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC-CCcccCC
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGA  317 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~  317 (518)
                      .+.++|+++..++........+++++|.+++||+++++++.+++.+.+++.++++.||+||++......... .....++
T Consensus       241 ~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  320 (497)
T PRK06145        241 CAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGS  320 (497)
T ss_pred             EEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCC
Confidence            999999999999987766667788999999999999999999999888778899999999998754433221 2234578


Q ss_pred             CCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114          318 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  396 (518)
Q Consensus       318 ~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  396 (518)
                      +|.|+++++++++|+++.+++.|+  .||+++ ++..+.+|.  .+...+...+       .++||+|||+++++++|++
T Consensus       321 ~G~~~~~~~~~i~~~~~~~~~~~~--~Gel~v~g~~~~~Gy~--~~~~~~~~~~-------~~~~~~TGDl~~~~~~g~l  389 (497)
T PRK06145        321 TGRALAHVEIRIADGAGRWLPPNM--KGEICMRGPKVTKGYW--KDPEKTAEAF-------YGDWFRSGDVGYLDEEGFL  389 (497)
T ss_pred             cccCCCCceEEEECCCCCCCCCCC--ceEEEEECcchhhhhc--CChHHHHHHH-------hCCCeeccceEEEcCCCcE
Confidence            999999999999999999999998  699999 666555432  2222222222       1369999999999999999


Q ss_pred             EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      +++||.+|+|+++|.+++|.+||+.|. .+|+|.+++|++.+++..| +.+.+++++.+....+.+++.++    ++++|
T Consensus       390 ~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l  463 (497)
T PRK06145        390 YLTDRKKDMIISGGENIASSEVERVIY-ELPEVAEAAVIGVHDDRWG-ERITAVVVLNPGATLTLEALDRH----CRQRL  463 (497)
T ss_pred             EEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEecCCCccC-ceEEEEEEECCCCCCCHHHHHHH----HHHhh
Confidence            999999999999999999999999997 8999999999999988777 88999999876555555555554    66778


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHHHHh
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK  509 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~  509 (518)
                      ++++.|..+.++++||+|++||++|+.|++++.
T Consensus       464 ~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        464 ASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             hcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence            999999999999999999999999999998764

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-61  Score=505.44  Aligned_cols=484  Identities=18%  Similarity=0.153  Sum_probs=364.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++++++.++.+++..+++.++++++|+++
T Consensus        63 ~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~  142 (600)
T PRK08279         63 ISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGE  142 (600)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEECh
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      +.+............++.......     .....+.++.......+............+++++++||||||
T Consensus       143 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTT  211 (600)
T PRK08279        143 ELV------EAFEEARADLARPPRLWVAGGDTL-----DDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTT  211 (600)
T ss_pred             HHH------HHHHHHhhhhcccceEEEecCccc-----cccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCC
Confidence            533      222222211111111111111000     001223333322221111111122234568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      |.||+|+++|.++..++......++++++|++++.+|++|.+++.. ++.++..|+++++.+ .+++..+++.++++++|
T Consensus       212 G~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t  290 (600)
T PRK08279        212 GLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR-KFSASRFWDDVRRYRAT  290 (600)
T ss_pred             CCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhcce
Confidence            9999999999999999888777788999999999999999999876 556677777777755 67788999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCC
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF  318 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~  318 (518)
                      ++.++|++++.++...........++|.+  +|+.+++++.+.+.+.++...+++.||+||++..+...    ....+++
T Consensus       291 ~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~----~~~~~~~  364 (600)
T PRK08279        291 AFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV----FNFDGTV  364 (600)
T ss_pred             EEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc----CCCCccc
Confidence            99999999999987654444455677754  47779999999998888666799999999988643321    2234566


Q ss_pred             Ccccc----cccE---------EEECCCC--CCCCCCCCeeeeee--e-cccccCCccccccccccceeeeCCCCCCCce
Q 010114          319 STATM----TAGL---------VILDECG--VPYPDDQPCVGEVG--L-FPLYLGASDRLLNADHEEVYFRGMPMYKGMC  380 (518)
Q Consensus       319 g~~~~----~~~~---------~i~~~~g--~~~~~~~~~~Gel~--v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (518)
                      |.+.+    +..+         .+.+.++  .+++.|+  .||++  + ++..+.+   |.+...+...+.......+++
T Consensus       365 g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~--~Gel~~~i~~~~~~~G---Y~~~~~t~~~~~~~~~~~~~~  439 (600)
T PRK08279        365 GRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGE--VGLLIGRITDRGPFDG---YTDPEASEKKILRDVFKKGDA  439 (600)
T ss_pred             ccccccccccceeeeeccCcCceeeCCCCccccCCCCC--ceeEEEEecCcccccc---cCCchhhHHHHhhcccCCCCc
Confidence            66555    2222         2333333  2467777  69998  4 5555544   234444443333333345678


Q ss_pred             eccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCC
Q 010114          381 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ  460 (518)
Q Consensus       381 ~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~  460 (518)
                      ||+|||+|++++||++++.||.+|+||++|++|+|.+||+++. ++|+|.+++|++.+++..+.....++++..++...+
T Consensus       440 ~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~-~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~  518 (600)
T PRK08279        440 WFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALS-GFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFD  518 (600)
T ss_pred             eEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHh-cCCCcceEEEEEeecCCCCCccceeEEEecCCccCC
Confidence            9999999999999999999999999999999999999999998 899999999999886543214556666666544455


Q ss_pred             hhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          461 PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       461 ~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      .+++.++    ++++|++|++|..|+++++||+|++||++|+.|++++.+..
T Consensus       519 ~~~l~~~----l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  566 (600)
T PRK08279        519 LAALAAH----LYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDPS  566 (600)
T ss_pred             HHHHHHH----HHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCcc
Confidence            5555554    66789999999999999999999999999999999887763

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.1e-60  Score=497.33  Aligned_cols=480  Identities=20%  Similarity=0.231  Sum_probs=372.2

Q ss_pred             CCHHHHHHHHHHHHHHHhh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~-~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|++|.+ . +++||+|+++++|++++++++|||+++|++++++++..+..++.++++.++++++|++
T Consensus        50 ~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~  129 (562)
T PRK12492         50 LSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYL  129 (562)
T ss_pred             eeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEec
Confidence            6999999999999999987 4 9999999999999999999999999999999999999999999999999999999997


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeec--------------ccc--ccC---CCCCCcccccchhhhhccCCCCCCCCCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVL--------------PAI--GND---VGIPLREQDLSWKDFLSSVDYHPRPNYY  139 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (518)
                      +....      ................              ...  ...   ..........++.++......    ...
T Consensus       130 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  199 (562)
T PRK12492        130 NMFGK------LVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRG----LSL  199 (562)
T ss_pred             cccch------HHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCCcccccHHHHHhccCC----CCC
Confidence            64321      1111111100000000              000  000   000000122344444332211    111


Q ss_pred             CCCCCCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcccccc---------CCC-CcEEEeecCchhhhhhHH-HHH
Q 010114          140 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID---------LKV-GDVYCWPTNLGWVMGPVI-LFS  208 (518)
Q Consensus       140 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~---------~~~-~d~~l~~~pl~~~~~~~~-~~~  208 (518)
                      .+.....+++++++|||||||.||+|+++|.++..+.......+.         +.. .++++..+|++|.+++.. ++.
T Consensus       200 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~  279 (562)
T PRK12492        200 KPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMC  279 (562)
T ss_pred             CCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHH
Confidence            223345689999999999999999999999999776654333222         223 356788999999999865 677


Q ss_pred             hhhcCcEEEEecCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhcccc
Q 010114          209 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY  288 (518)
Q Consensus       209 ~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~  288 (518)
                      .+..|+..++.....++..+++.++++++|.+.++|+++..+++.......+++++|.++++|+++++++.+++.+.+ +
T Consensus       280 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~  358 (562)
T PRK12492        280 MMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLT-G  358 (562)
T ss_pred             HhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEeccccCCHHHHHHHHHHh-C
Confidence            788898887776556778899999999999999999999999987766667788999999999999999999888765 6


Q ss_pred             CceeccccccccceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccc
Q 010114          289 NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEE  367 (518)
Q Consensus       289 ~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~  367 (518)
                      +++++.||+||++.++..+........+++|.|++++.++|+|+++.+++.|+  .|||++ ++..+.+|  +.+++.+.
T Consensus       359 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~--~Gel~v~g~~~~~gY--~~~~~~t~  434 (562)
T PRK12492        359 CTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGE--RGELCIKGPQVMKGY--WQQPEATA  434 (562)
T ss_pred             CceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCCC--ceEEEEeCCcccccc--ccCchhhh
Confidence            88999999999987766555444445678999999999999999999999998  699999 66555442  22333333


Q ss_pred             eeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEE
Q 010114          368 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL  447 (518)
Q Consensus       368 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~  447 (518)
                      ..+      ..++||+|||+|+++++|++++.||.+|+++++|.+|+|.+||+.|. +||.|.+++|++.+++..+ +.+
T Consensus       435 ~~~------~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~  506 (562)
T PRK12492        435 EAL------DAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVM-AHPKVANCAAIGVPDERSG-EAV  506 (562)
T ss_pred             hcc------cCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCCC-ceE
Confidence            222      23579999999999999999999999999999999999999999998 8999999999999888777 888


Q ss_pred             EEEEEecCCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHH
Q 010114          448 VIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI  508 (518)
Q Consensus       448 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~  508 (518)
                      .++++..+. ..+.++    +++.+.++++++++|..+.+++++|+|.+||++|++|++++
T Consensus       507 ~~~v~~~~~-~~~~~~----i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~~  562 (562)
T PRK12492        507 KLFVVARDP-GLSVEE----LKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDIA  562 (562)
T ss_pred             EEEEEeCCC-CCCHHH----HHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhhC
Confidence            888876543 233344    44446678999999999999999999999999999998753

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=5.2e-61  Score=495.43  Aligned_cols=456  Identities=18%  Similarity=0.138  Sum_probs=347.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEeccc-------chhHHHHHHHHHhcCce
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD-------SFAAREIATRLRVSKAK   73 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~-------~~~~~~i~~~l~~~~~~   73 (518)
                      +||+||.++++++|+.|.+. ++||+|+++++|++++++++|||+++|+++++++.       ....+++.+++..++++
T Consensus        32 ~ty~el~~~~~~lA~~L~~~-~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  110 (525)
T PRK05851         32 HPWPEVHGRAENVAARLLDR-DRPGAVGLVGEPTVELVAAIQGAWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVR  110 (525)
T ss_pred             ecHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCC
Confidence            59999999999999999987 89999999999999999999999999998654421       12234556778999999


Q ss_pred             EEEechhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEE
Q 010114           74 GIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL  153 (518)
Q Consensus        74 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  153 (518)
                      ++|+++....      .......    . +.+.               .+...... .   .....  ....++++++++
T Consensus       111 ~vi~~~~~~~------~~~~~~~----~-~~~~---------------~~~~~~~~-~---~~~~~--~~~~~~d~a~i~  158 (525)
T PRK05851        111 TVLSHGSHLE------RLRAVDS----S-VTVH---------------DLATAAHT-N---RSASL--TPPDSGGPAVLQ  158 (525)
T ss_pred             EEEeCHHHHH------HHHHhhc----c-cccc---------------cccccccc-c---ccccC--CCCCCCCeEEEE
Confidence            9999874321      1111000    0 0000               00000000 0   00000  113568999999


Q ss_pred             eccCCCCCCceEEeccchhHHHhhhccccccCC-CCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC-C--ChhHHH
Q 010114          154 FSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK-VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS-P--LERSFG  229 (518)
Q Consensus       154 ~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~-~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~-~--~~~~~~  229 (518)
                      |||||||.||||+++|.++..++......+++. ++|++++.+|++|.+++..++.+++.|+++++.+.. +  ++..++
T Consensus       159 ~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~  238 (525)
T PRK05851        159 GTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWL  238 (525)
T ss_pred             eCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHH
Confidence            999999999999999999999888777778888 899999999999999998888999999999987631 2  467889


Q ss_pred             HHHHHcCccEEEechHHHHHHHhccc-CCCCCccchhhhhccCCCCCchhhhHhhhc---c--ccCceecccccccccee
Q 010114          230 KFVQDAGVTVLGTVPSLVKAWRNTNC-LEGLDWTKIRSFASTGETSNVDDDLWLSSK---A--WYNAIIESCGGTELSSA  303 (518)
Q Consensus       230 ~~i~~~~~t~l~~~P~~~~~l~~~~~-~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~---~--~~~~i~~~yg~tE~~~~  303 (518)
                      +.++++++|.+..+|.++..+.+... ....+++++|.++++|+++++++.+++.+.   +  +...+++.||+||++..
T Consensus       239 ~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~  318 (525)
T PRK05851        239 SWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCA  318 (525)
T ss_pred             HHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceE
Confidence            99999999988666655555544322 234568899999999999999998887754   2  12359999999999865


Q ss_pred             EeecCCC--------------CCcccCCCCcccccccEEEECCCC-CCCCCCCCeeeeeee-cccccCCccccccccccc
Q 010114          304 YIQGSLL--------------QPQAFGAFSTATMTAGLVILDECG-VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEE  367 (518)
Q Consensus       304 ~~~~~~~--------------~~~~~~~~g~~~~~~~~~i~~~~g-~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~  367 (518)
                      +......              .....+++|+|+++++++|+|+++ .+++.|+  .|||++ ++.++.+|          
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~--~GEl~v~g~~~~~GY----------  386 (525)
T PRK05851        319 VTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGRE--IGEIEIRGASMMSGY----------  386 (525)
T ss_pred             EEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCC--eEEEEEecCchhhcc----------
Confidence            5433211              012346899999999999999776 4588888  699999 76666553          


Q ss_pred             eeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEE
Q 010114          368 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL  447 (518)
Q Consensus       368 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~  447 (518)
                        +.+.. .+.++||+|||+|+++ +|+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.+
T Consensus       387 --~~~~~-~~~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~~~~~~~-~~~  460 (525)
T PRK05851        387 --LGQAP-IDPDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAA-QVRGVREGAVVAVGTGEGS-ARP  460 (525)
T ss_pred             --ccCCc-cCCCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCcccceEEEEEecCCC-Cce
Confidence              22211 2345799999999996 8999999999999999999999999999997 8999999999999888777 667


Q ss_pred             EEEEEecCCCCCChhHHHHHHHHHHHhccCCccccceEEEec--CCCCCCCchhHHHHHHHHHhc
Q 010114          448 VIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       448 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~--~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      .++++.... ..+.+++.+.+++++..++  ++.|..+++++  +||+|++||++|+.|++.+.+
T Consensus       461 ~~~v~~~~~-~~~~~~~~~~~~~~l~~~l--~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        461 GLVIAAEFR-GPDEAGARSEVVQRVASEC--GVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             eEEEEEEec-CcchHHHHHHHHHHHHHHh--CCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence            776665421 2345667777766665554  28899999998  899999999999999998864

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=5.2e-61  Score=496.47  Aligned_cols=473  Identities=19%  Similarity=0.204  Sum_probs=372.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|..|.+. +++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.++++.+++++
T Consensus        49 ~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~  128 (527)
T TIGR02275        49 WSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDR  128 (527)
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcC
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...... .................++......       ........+.....     ........++++++++||||||
T Consensus       129 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTT  195 (527)
T TIGR02275       129 AHSLFD-YDAFARQLQSKLPTLRNIIVAGQTR-------VEAELFLWLESPAE-----PVKFPPTKSDEVAFFQLSGGST  195 (527)
T ss_pred             cccccc-hHHHHHHHHhhCCcceEEEEecCCC-------CcchhhHHhhCcCc-----cccCCCCCCCccEEEEeCCCCC
Confidence            421000 0000111111111111111110000       00011111111110     1111234568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH--HHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |.||+|.++|.++..++......+.+..+|++++.+|++|.+++..  ++.++..|+++++.+ ...+..+++.++++++
T Consensus       196 G~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~  274 (527)
T TIGR02275       196 GTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAP-DPSPTDCFPLIERHKV  274 (527)
T ss_pred             CCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECC-CCCHHHHHHHHHHhCC
Confidence            9999999999999888877666778899999999999999999863  788899999998765 5678899999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      |++.++|.+++.+++.......+++++|.+++||+++++++.+++.+.+ +.++++.||+||++..............++
T Consensus       275 t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  353 (527)
T TIGR02275       275 TVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAEGLVNYTRLDDPAEIIFTT  353 (527)
T ss_pred             eEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCccCccccCCCCcccccccc
Confidence            9999999999999888766667788999999999999999999998776 688999999999654332222122234568


Q ss_pred             CCccc-ccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCce
Q 010114          318 FSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY  395 (518)
Q Consensus       318 ~g~~~-~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  395 (518)
                      +|.|+ ++..++++|++|++++.|+  .|||++ ++.++.+|.  .+...+...      ...++||+|||+++++++|+
T Consensus       354 ~G~~~~~~~~v~i~d~~g~~~~~g~--~Gei~v~g~~~~~gY~--~~~~~~~~~------~~~dg~~~TGDl~~~~~~g~  423 (527)
T TIGR02275       354 QGRPMSPDDEVRVVDDHGNPVAPGE--TGMLLTRGPYTFRGYY--KAPEHNAAA------FDAEGFYYTGDLVRLTPEGY  423 (527)
T ss_pred             CCCCCCCCceEEEECCCCCCCCCCC--ceEEEecCCccchhhc--CChhHhHhh------cCcCCCEEcCceEEEcCCcc
Confidence            89999 4889999999999999998  699999 666665432  222222222      23467999999999999999


Q ss_pred             EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh-
Q 010114          396 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-  474 (518)
Q Consensus       396 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-  474 (518)
                      +++.||.+|+|+++|.+|+|.+||++|. +||+|.+++|++.+++..+ +.+.+++++.++ ..+.+++.+.    +.+ 
T Consensus       424 l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~vv~~~~-~~~~~~l~~~----l~~~  496 (527)
T TIGR02275       424 IVVVGRAKDQINRGGEKIAAEEIENLLL-AHPAVHDAALVSMPDELLG-EKSCAFIVVRDP-ALKAAQLRRF----LRER  496 (527)
T ss_pred             EEEEecccceeecCCEEECHHHHHHHHH-hCCCceEEEEEecCCcccc-cEEEEEEEECCC-CCCHHHHHHH----HHhC
Confidence            9999999999999999999999999998 9999999999999998888 889999988764 3455555555    554 


Q ss_pred             ccCCccccceEEEecCCCCCCCchhHHHHHH
Q 010114          475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLR  505 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~  505 (518)
                      +++++++|..+.++++||+|++||++|+.|+
T Consensus       497 ~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       497 GLAEYKLPDRVEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             CCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence            5999999999999999999999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4e-61  Score=504.84  Aligned_cols=472  Identities=21%  Similarity=0.208  Sum_probs=357.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEec-ccchh--HHHHHHHHHhcCceEEEe
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI-ADSFA--AREIATRLRVSKAKGIFT   77 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l-~~~~~--~~~i~~~l~~~~~~~ii~   77 (518)
                      +||+||.++++++|++|.+.+++||+|+++++|+++|+++++||+++|++++|+ ++.++  ++++.++++.++++++|+
T Consensus        69 ~Ty~el~~~~~~lA~~L~~~~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~  148 (612)
T PRK12476         69 LTWTQLGVRLRAVGARLQQVAGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLT  148 (612)
T ss_pred             EeHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEE
Confidence            599999999999999998779999999999999999999999999999999999 57765  789999999999999999


Q ss_pred             chhhhccCCCCcchhhhhccCC---CceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           78 QDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      ++....      ..........   ...++...                 ++....     ..........++++++++|
T Consensus       149 ~~~~~~------~~~~~~~~~~~~~~~~~i~~~-----------------~~~~~~-----~~~~~~~~~~~~d~a~i~y  200 (612)
T PRK12476        149 TTAAAE------AVEGFLRNLPRLRRPRVIAID-----------------AIPDSA-----GESFVPVELDTDDVSHLQY  200 (612)
T ss_pred             cHHHHH------HHHHHHhhcccccCceEEEec-----------------cccccc-----cccccCCCCCCCceEEEEe
Confidence            875431      1111111111   01111100                 000000     0011112235689999999


Q ss_pred             ccCCCCCCceEEeccchhHHHhhhcccccc-CCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC-C--ChhHHHH
Q 010114          155 SSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS-P--LERSFGK  230 (518)
Q Consensus       155 TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~-~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~-~--~~~~~~~  230 (518)
                      ||||||.||||.++|+++..++......++ +.+++++++.+|++|.+|+...+.+++.|++.++..+. +  ++..+++
T Consensus       201 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~  280 (612)
T PRK12476        201 TSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIK  280 (612)
T ss_pred             CCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence            999999999999999999877666555566 68889999999999999997766665667777666542 2  6788999


Q ss_pred             HHH--HcCccEEEechHHHHHHHhccc----CCCCCccchhhhhccCCCCCchhhhHhhhccc-----cCceeccccccc
Q 010114          231 FVQ--DAGVTVLGTVPSLVKAWRNTNC----LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTE  299 (518)
Q Consensus       231 ~i~--~~~~t~l~~~P~~~~~l~~~~~----~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-----~~~i~~~yg~tE  299 (518)
                      .++  +++++.++++|.++..++....    ....+++++| +++||+++++++.+++.+.+.     ...+++.||+||
T Consensus       281 ~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE  359 (612)
T PRK12476        281 ALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAE  359 (612)
T ss_pred             HHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhh
Confidence            995  4899999999998887776421    2345688999 999999999999998887652     245999999999


Q ss_pred             cceeEeecCCCC--------------------------CcccCCCCcccccccEEEECCC-CCCCCCCCCeeeeeee-cc
Q 010114          300 LSSAYIQGSLLQ--------------------------PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FP  351 (518)
Q Consensus       300 ~~~~~~~~~~~~--------------------------~~~~~~~g~~~~~~~~~i~~~~-g~~~~~~~~~~Gel~v-~~  351 (518)
                      ++..+.......                          ....+++|+|+++++++|+|++ |.+++.|+  .|||++ ++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~--~GEl~v~g~  437 (612)
T PRK12476        360 ATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGE--VGEIWLHGD  437 (612)
T ss_pred             hheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCC--EEEEEEcCC
Confidence            876543322110                          0023578999999999999977 99999998  699999 76


Q ss_pred             cccCCccccccccccceeeeCC------------CCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHH
Q 010114          352 LYLGASDRLLNADHEEVYFRGM------------PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE  419 (518)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE  419 (518)
                      ..+.+|  +.+++.+...+...            ...++++||+|||+|+++ ||+|+++||.+|+||++|++|+|.+||
T Consensus       438 ~v~~GY--~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE  514 (612)
T PRK12476        438 NIGRGY--WGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIE  514 (612)
T ss_pred             cccccc--cCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEECCcccCHHHHH
Confidence            666553  33344343333210            011245799999999984 999999999999999999999999999


Q ss_pred             HHHhhcCcccce--eeEEEeCCCCCCccEEEEEEEecCCCC-CChhHHHHHHHHHHHhccCCccc-cceEEEec--CCCC
Q 010114          420 RVCDQADESILE--TAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFK-VSLVKVVP--EFPR  493 (518)
Q Consensus       420 ~~l~~~~~~v~~--~~vv~~~~~~~g~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~-p~~i~~v~--~~P~  493 (518)
                      ++|.+.||.|.+  +++++.+++. + +.++++++++++.. .+.+++.+++++.+...   +++ |..+.+++  +||+
T Consensus       515 ~~l~~~~p~V~~~~v~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~---~~~~p~~v~~v~~~~lP~  589 (612)
T PRK12476        515 ATVAEASPMVRRGYVTAFTVPAED-N-ERLVIVAERAAGTSRADPAPAIDAIRAAVSRR---HGLAVADVRLVPAGAIPR  589 (612)
T ss_pred             HHHHHhcccccCCcEEEEEecCCC-c-ceEEEEEEecCCcccccHHHHHHHHHHHHHHh---hCCcceEEEEECCCCcCc
Confidence            999735899999  6777877776 5 78899999887542 46677777777666543   456 57888887  6999


Q ss_pred             CCCchhHHHHHHHHHhcc
Q 010114          494 TASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       494 t~~GKv~R~~l~~~~~~~  511 (518)
                      |++||++|++|++++.+.
T Consensus       590 t~~GKi~r~~L~~~~~~~  607 (612)
T PRK12476        590 TTSGKLARRACRAQYLDG  607 (612)
T ss_pred             CCchHHHHHHHHHHHHcC
Confidence            999999999999998653

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=3.3e-61  Score=547.87  Aligned_cols=464  Identities=22%  Similarity=0.262  Sum_probs=379.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++||+|+++++++++++++++||+++|++++|+++.++.+++..+++.++++++|+++
T Consensus       484 ~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~  563 (1296)
T PRK10252        484 FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTA  563 (1296)
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .......      .    .... ..                ..+........      ........++++++++||||||
T Consensus       564 ~~~~~~~------~----~~~~-~~----------------~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGST  610 (1296)
T PRK10252        564 DQLPRFA------D----VPDL-TS----------------LCYNAPLAPQG------AAPLQLSQPHHTAYIIFTSGST  610 (1296)
T ss_pred             chhhhcc------c----CCCc-ee----------------eeccccccccc------CCCCCCCCCCCeEEEEECCCCC
Confidence            4321110      0    0000 00                00000000000      0111122568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~  237 (518)
                      |.||||+++|.++.+.+.+....+++.++|++++..|++|..++..++.++..|+++++.++.  .++..+.+.++++++
T Consensus       611 G~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~v  690 (1296)
T PRK10252        611 GRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGV  690 (1296)
T ss_pred             CCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCC
Confidence            999999999999999998888888999999999999999999988899999999999997653  367889999999999


Q ss_pred             cEEEechHHHHHHHhcccCCC--CCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC----
Q 010114          238 TVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----  311 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----  311 (518)
                      |++.++|+++..+++......  ..++++|.+++|||++++++.+.+.+.+ +++++|.||+||++..+.......    
T Consensus       691 t~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~  769 (1296)
T PRK10252        691 TTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELA  769 (1296)
T ss_pred             eEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeeccccccc
Confidence            999999999999887643222  3467999999999999999999888765 678999999999987554433222    


Q ss_pred             --CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114          312 --PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII  388 (518)
Q Consensus       312 --~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~  388 (518)
                        .....++|.|+++++++|+|+++++++.|+  .|||++ ++++..+|  +.+++.+...|...++.++.+||+|||+|
T Consensus       770 ~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~--~Gel~i~g~~~~~GY--~~~~~~t~~~f~~~~~~~~~~~y~TGDl~  845 (1296)
T PRK10252        770 AVRGSSVPIGYPVWNTGLRILDARMRPVPPGV--AGDLYLTGIQLAQGY--LGRPDLTASRFIADPFAPGERMYRTGDVA  845 (1296)
T ss_pred             ccCCCCCCcccccCCCEEEEECCCCCCCCCCC--ceEEEecccccchhh--CCCcccchhhcccCCCCCCCEEEecCceE
Confidence              233467999999999999999999999999  699999 77766654  34555566667666666788999999999


Q ss_pred             EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeC----CCCCC-ccEEEEEEEecCCCCCChhH
Q 010114          389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS----PAGGG-PEVLVIFVVLKKGFTSQPDK  463 (518)
Q Consensus       389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~----~~~~g-~~~~~~~v~~~~~~~~~~~~  463 (518)
                      ++++||.++++||.||+||++|++|+|.+||.+|. +||+|.+++|+...    +...| ...++++++..++...+.++
T Consensus       846 ~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~-~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~  924 (1296)
T PRK10252        846 RWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQ-ALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSA  924 (1296)
T ss_pred             EEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHH-hCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHH
Confidence            99999999999999999999999999999999998 89999999876542    11222 24789999887654445455


Q ss_pred             HHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHH
Q 010114          464 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       464 l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~  507 (518)
                      +++    ++.++|+.|++|..++.+++||+|++||++|++|++.
T Consensus       925 l~~----~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~  964 (1296)
T PRK10252        925 LQA----QLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLP  964 (1296)
T ss_pred             HHH----HHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCCC
Confidence            544    4678899999999999999999999999999999764

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.5e-60  Score=493.62  Aligned_cols=478  Identities=18%  Similarity=0.210  Sum_probs=377.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++|++|+++++|+++++++++||+++|++++++.+.....++..+++.++++.+++++
T Consensus        49 ~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~  128 (536)
T PRK10946         49 FSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADR  128 (536)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEec
Confidence            69999999999999999999 99999999999999999999999999999888777777788899999999999999986


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ..... ........+.........+.....        .....+.+++.....     ........++++++++||||||
T Consensus       129 ~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTT  194 (536)
T PRK10946        129 QHALF-SDDDFLNTLVAEHSSLRVVLLLND--------DGEHSLDDAINHPAE-----DFTATPSPADEVAFFQLSGGST  194 (536)
T ss_pred             ccccc-chHHHHHHHHhhCCCceEEEEecC--------CCCccHHHHhhCccc-----ccccCCCCCCCeEEEEeCCCCC
Confidence            32100 000011111111111111111100        112234444432221     1112234568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhH--HHHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |.||+|+++|.++..++......+++..+|++++.+|++|.+++.  .++.++..|+++++.+ ..++..+++.++++++
T Consensus       195 G~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~  273 (536)
T PRK10946        195 GTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP-DPSATLCFPLIEKHQV  273 (536)
T ss_pred             CCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC-CCCHHHHHHHHHHhCC
Confidence            999999999999999888777778889999999999999998875  3788899999998765 5677889999999999


Q ss_pred             cEEEechHHHHHHHhcc--cCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCccc
Q 010114          238 TVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF  315 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~--~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~  315 (518)
                      |++.++|.++..|++..  ......++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..............
T Consensus       274 t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~  352 (536)
T PRK10946        274 NVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYTRLDDSDERIF  352 (536)
T ss_pred             cEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccccceeeecCCCcccccc
Confidence            99999999999998763  22334578999999999999999999988766 6899999999997644322222222346


Q ss_pred             CCCCccc-ccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecC
Q 010114          316 GAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  393 (518)
Q Consensus       316 ~~~g~~~-~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  393 (518)
                      +++|.|+ +++.++++|++|++++.|+  .|||++ ++..+.+|+  .+...+...+      ..++||+|||++++|++
T Consensus       353 ~~~G~p~~~~~~v~i~d~~~~~~~~g~--~Gel~v~g~~~~~GY~--~~~~~t~~~~------~~d~~~~TGDl~~~d~~  422 (536)
T PRK10946        353 TTQGRPMSPDDEVWVADADGNPLPQGE--VGRLMTRGPYTFRGYY--KSPQHNASAF------DANGFYCSGDLVSIDPD  422 (536)
T ss_pred             ccCCcccCCCceEEEECCCCCCCCCCC--ccEEEEecCccchhhc--CCcccchhhc------ccCCceecCceEEECCC
Confidence            7899998 7899999999999999999  699999 776665542  2233222222      34579999999999999


Q ss_pred             ceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHH
Q 010114          394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  473 (518)
Q Consensus       394 g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  473 (518)
                      |++++.||.+|+++++|.+++|.+||+.|. ++|+|.++++++.+++..| +.++++++++++  .+.+++.+.    +.
T Consensus       423 G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~a~vv~~~~--~~~~~l~~~----~~  494 (536)
T PRK10946        423 GYITVVGREKDQINRGGEKIAAEEIENLLL-RHPAVIHAALVSMEDELMG-EKSCAFLVVKEP--LKAVQLRRF----LR  494 (536)
T ss_pred             CcEEEeccccceeecCCEEEcHHHHHHHHH-hCCCcceEEEEcCCCcccC-ceEEEEEEeCCC--CCHHHHHHH----HH
Confidence            999999999999999999999999999997 9999999999999998878 888999987764  455565555    44


Q ss_pred             h-ccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          474 S-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       474 ~-~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      + ++++|++|..+.+++++|+|++||++|++|++++.+..
T Consensus       495 ~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~  534 (536)
T PRK10946        495 EQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA  534 (536)
T ss_pred             hCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence            4 49999999999999999999999999999999988654

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=3.2e-61  Score=509.46  Aligned_cols=491  Identities=18%  Similarity=0.148  Sum_probs=364.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+|+.++++++|++|.+. +++||+|+++++|++||+++++||+++|++++|+++.++++++.++|++++++++|+++
T Consensus       107 ~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~  186 (696)
T PLN02387        107 ITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDS  186 (696)
T ss_pred             EEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECH
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCc-eeeccccccCC-C----CCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEE
Q 010114           80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDV-G----IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL  153 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  153 (518)
                      ...      ..+.+........ .++..+..... .    ........+|.++...+...+    .......++++++|+
T Consensus       187 ~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dd~a~I~  256 (696)
T PLN02387        187 KQL------KKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENP----VDPDLPSPNDIAVIM  256 (696)
T ss_pred             HHH------HHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCC----CCCCCCCccceEEEE
Confidence            543      2222222222211 22221111000 0    001112345666655433211    111223579999999


Q ss_pred             eccCCCCCCceEEeccchhHHHhhhccccc-cCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCC-------h
Q 010114          154 FSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------E  225 (518)
Q Consensus       154 ~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~-------~  225 (518)
                      |||||||.||||++||++++.++....... .+.++|++++++|++|.+++...+..+..|+++.+..+...       +
T Consensus       257 yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~  336 (696)
T PLN02387        257 YTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIK  336 (696)
T ss_pred             ecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccc
Confidence            999999999999999999998877654443 57889999999999999998776666777887766432211       2


Q ss_pred             hHHHHHHHHcCccEEEechHHHHHHHhcccCC-------------------------------CC---------------
Q 010114          226 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE-------------------------------GL---------------  259 (518)
Q Consensus       226 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------------~~---------------  259 (518)
                      ..++..+++++||++.++|.+++.+.+.....                               ..               
T Consensus       337 ~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (696)
T PLN02387        337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRA  416 (696)
T ss_pred             cCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHH
Confidence            34567899999999999999999886532100                               00               


Q ss_pred             Cc-cchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEEC-CCCC-C
Q 010114          260 DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGV-P  336 (518)
Q Consensus       260 ~l-~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~-~  336 (518)
                      .+ +++|.+++||+++++++.+++...+ +++++++||+||+++..+.... .....+++|.|+|+++++|+| +++. .
T Consensus       417 ~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~TEt~~~~~~~~~-~~~~~gsvG~p~p~~evkivd~~~~~~~  494 (696)
T PLN02387        417 VLGGRIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLTETCAGATFSEW-DDTSVGRVGPPLPCCYVKLVSWEEGGYL  494 (696)
T ss_pred             HhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechhhcccceeecCc-ccCCCCccCCCCCceEEEEeeccccCcc
Confidence            01 5799999999999999988877655 6889999999999865544433 234568999999999999998 4443 2


Q ss_pred             C--CCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeee-Ccee
Q 010114          337 Y--PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIK  412 (518)
Q Consensus       337 ~--~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~  412 (518)
                      +  .++.  .|||++ ++.++.+|  +.+++.+...+..+  .+|.+||+|||+|++|+||+|+++||.+|+||+ +|++
T Consensus       495 ~~~~~~p--~GEi~vrGp~v~~GY--~~~pe~T~~~f~~d--~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~  568 (696)
T PLN02387        495 ISDKPMP--RGEIVIGGPSVTLGY--FKNQEKTDEVYKVD--ERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEY  568 (696)
T ss_pred             cCCCCCC--CceEEeccCcccchh--cCCHHHHhhhhccc--cCCCceeecCceEEECCCCcEEEEEcccceEECCCCeE
Confidence            2  1222  499999 77777764  33454444444211  135569999999999999999999999999997 6999


Q ss_pred             cchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC----------C-C------ChhHHHHHHHHHH---
Q 010114          413 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------T-S------QPDKLKMIFSKAI---  472 (518)
Q Consensus       413 v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~----------~-~------~~~~l~~~~~~~~---  472 (518)
                      |+|.+||++|. +||.|.+++|++.+..    ..++++|++.++.          . .      +..++.+.+.+.+   
T Consensus       569 I~p~eIE~~l~-~~p~V~~~~V~g~~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  643 (696)
T PLN02387        569 VSLGKVEAALS-VSPYVDNIMVHADPFH----SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKA  643 (696)
T ss_pred             EchHHHHHHHh-cCCCeeEEEEEecCCc----ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHH
Confidence            99999999997 9999999999986522    4677888876421          0 0      1123333333333   


Q ss_pred             --HhccCCccccceEEEecCCC------CCCCchhHHHHHHHHHhccccc
Q 010114          473 --QSKLNPLFKVSLVKVVPEFP------RTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       473 --~~~l~~~~~p~~i~~v~~~P------~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                        +++|+.+.+|+.|.++++-.      .|+++|+.|+.+++.|+++|+.
T Consensus       644 ~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~  693 (696)
T PLN02387        644 AKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKK  693 (696)
T ss_pred             HHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHHH
Confidence              35799999999999997644      6888999999999999998864

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.4e-60  Score=487.11  Aligned_cols=452  Identities=23%  Similarity=0.247  Sum_probs=369.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++.+|+++
T Consensus        28 ~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~  107 (483)
T PRK03640         28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDD  107 (483)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .....      ...   .                     ....+.++......    ..........+++++++||||||
T Consensus       108 ~~~~~------~~~---~---------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtT  153 (483)
T PRK03640        108 DFEAK------LIP---G---------------------ISVKFAELMNGPKE----EAEIQEEFDLDEVATIMYTSGTT  153 (483)
T ss_pred             hhhHH------Hhh---h---------------------ccccHHHHhhcccc----cCCCCCCCCCCCeEEEEeCCCcC
Confidence            43211      000   0                     00012222222111    01112233568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      |.||+|.++|.++...+......++++++|++++.+|++|++++..++.++..|+++++.+ ..++..+++.++++++|+
T Consensus       154 G~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~  232 (483)
T PRK03640        154 GKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVE-KFDAEKINKLLQTGGVTI  232 (483)
T ss_pred             CCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHhCCcE
Confidence            9999999999998887766666678899999999999999999988889999999999887 567899999999999999


Q ss_pred             EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCC-CCCcccCCC
Q 010114          240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAF  318 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~-~~~~~~~~~  318 (518)
                      +.++|+++..|++..... ....++|.++++|+++++.+.+.+.+.  ++++++.||+||++........ ......+++
T Consensus       233 l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        233 ISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             EEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCcccccccCCCc
Confidence            999999999998664322 234689999999999999998887753  6889999999998764333322 234456899


Q ss_pred             CcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEE
Q 010114          319 STATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII  397 (518)
Q Consensus       319 g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~  397 (518)
                      |.|++++++++.++ +.+++.|+  .|||++ ++..+.+|..  +...+...+       .++||+|||++++++||+++
T Consensus       310 G~p~~~~~~~i~~~-~~~~~~g~--~Gel~v~g~~~~~gy~~--~~~~~~~~~-------~~~~~~tGDl~~~~~~g~l~  377 (483)
T PRK03640        310 GKPLFPCELKIEKD-GVVVPPFE--EGEIVVKGPNVTKGYLN--REDATRETF-------QDGWFKTGDIGYLDEEGFLY  377 (483)
T ss_pred             ccccCCcEEEEecC-CCcCCCCC--ceEEEEECcchhhhhcC--CHHHHHHHH-------hcCCeeccceEEEcCCCCEE
Confidence            99999999999986 47888888  599999 7766654321  222111111       24699999999999999999


Q ss_pred             EeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccC
Q 010114          398 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN  477 (518)
Q Consensus       398 ~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~  477 (518)
                      +.||.+|++|.+|.+|++.+||+.+. .+++|.++++++.+++..+ +.+.++++..+  ..+.+++.++    +.++|+
T Consensus       378 ~~GR~~~~i~~~G~~v~~~~ie~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~----~~~~l~  449 (483)
T PRK03640        378 VLDRRSDLIISGGENIYPAEIEEVLL-SHPGVAEAGVVGVPDDKWG-QVPVAFVVKSG--EVTEEELRHF----CEEKLA  449 (483)
T ss_pred             EeecccCeEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeCCCcccC-CceEEEEEeCC--CCCHHHHHHH----HHHhcc
Confidence            99999999999999999999999997 8999999999999887777 78888777543  4455555554    667889


Q ss_pred             CccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          478 PLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       478 ~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      ++++|..|++++++|+|++||++|++|++++++
T Consensus       450 ~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        450 KYKVPKRFYFVEELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             CCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence            999999999999999999999999999999875

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-60  Score=489.67  Aligned_cols=474  Identities=18%  Similarity=0.189  Sum_probs=377.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++|++|+++++|+++++++++||+++|++++++++..+.+++..+++.++++.+++++
T Consensus        38 ~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~  117 (524)
T PRK06188         38 LTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDP  117 (524)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEec
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...     ................++......          .+.++....... ......+ ...++++++++||||||
T Consensus       118 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~-~~~~~~~a~i~~TSGtT  180 (524)
T PRK06188        118 APF-----VERALALLARVPSLKHVLTLGPVP----------DGVDLLAAAAKF-GPAPLVA-AALPPDIAGLAYTGGTT  180 (524)
T ss_pred             chh-----hHHHHHHhhhcCCceEEEEeCCcc----------chhhHHHhhhcc-Ccccccc-cCCCCCeEEEEeCCCCC
Confidence            411     011111111111111111100000          011111111100 0111111 12346699999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      |.||+|.++|.++...+......+++..++++++.+|++|.+++. ++.+++.|+++++.+ ..++..+++.++++++|+
T Consensus       181 G~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~  258 (524)
T PRK06188        181 GKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLA-KFDPAEVLRAIEEQRITA  258 (524)
T ss_pred             CCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcC-CCCHHHHHHHHHHhCCEE
Confidence            999999999999999888877888899999999999999998874 577899999999987 567899999999999999


Q ss_pred             EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-----Ccc
Q 010114          240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-----PQA  314 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-----~~~  314 (518)
                      +.++|+++..+++.......+++++|.+++||++++++....+.+.+ +..+++.||+||++..+.......     ...
T Consensus       259 ~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  337 (524)
T PRK06188        259 TFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHDPDDPKR  337 (524)
T ss_pred             EEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCceeecCchhcccccccc
Confidence            99999999999988766677889999999999999999888777666 567999999999976554443321     235


Q ss_pred             cCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecC
Q 010114          315 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  393 (518)
Q Consensus       315 ~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  393 (518)
                      ..++|.|++++.++|+|+++.+++.|+  .|||++ ++....+|+  .++..+...+       .++||+|||++++++|
T Consensus       338 ~~~~G~p~~g~~v~i~~~~~~~~~~g~--~Gel~v~~~~~~~gy~--~~~~~~~~~~-------~~g~~~TGDl~~~~~~  406 (524)
T PRK06188        338 LTSCGRPTPGLRVALLDEDGREVAQGE--VGEICVRGPLVMDGYW--NRPEETAEAF-------RDGWLHTGDVAREDED  406 (524)
T ss_pred             CCccccccCCcEEEEEcCCCCCCCCCC--eeEEEEECcchhhhhc--CChHHhhhhh-------cCCceeecceEEEcCC
Confidence            578999999999999999999999998  699999 655554421  1222111111       3469999999999999


Q ss_pred             ceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHH
Q 010114          394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  473 (518)
Q Consensus       394 g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  473 (518)
                      |++++.||.+|+++++|.+|+|.+||++|. .+++|.+++|++.+++..+ +.+.++++++++...+.+++.+.    +.
T Consensus       407 g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----~~  480 (524)
T PRK06188        407 GFYYIVDRKKDMIVTGGFNVFPREVEDVLA-EHPAVAQVAVIGVPDEKWG-EAVTAVVVLRPGAAVDAAELQAH----VK  480 (524)
T ss_pred             ccEEEEeccccceecCCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCcC-ceEEEEEEECCCCCCCHHHHHHH----HH
Confidence            999999999999999999999999999997 9999999999999888777 88999999887655555555554    66


Q ss_pred             hccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          474 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       474 ~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      +.++++++|..|+++++||+|++||++|++|++++.+.
T Consensus       481 ~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~  518 (524)
T PRK06188        481 ERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEG  518 (524)
T ss_pred             HhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhh
Confidence            78899999999999999999999999999999998543

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=4.4e-60  Score=487.85  Aligned_cols=468  Identities=18%  Similarity=0.191  Sum_probs=381.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|..|.+. +++||+|+++++|+.+++++++||+++|++++|+++..+.+++..+++..+++++++++
T Consensus        28 ~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (503)
T PRK04813         28 LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATE  107 (503)
T ss_pred             EeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ....      .      ..  ..                ..+.+.++......  ...........++++++++||||||
T Consensus       108 ~~~~------~------~~--~~----------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGTT  155 (503)
T PRK04813        108 ELPL------E------IL--GI----------------PVITLDELKDIFAT--GNPYDFDHAVKGDDNYYIIFTSGTT  155 (503)
T ss_pred             cccc------c------cc--CC----------------cEEehHHhhhhhhc--cccccccccCCCCCcEEEEECCCCC
Confidence            4210      0      00  00                00111111111000  0011112223568899999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~  237 (518)
                      |.||+|.++|.++..........+.+..+++++...|++|..++..++.++..|+++++.+..  .++..+++.++++++
T Consensus       156 G~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~  235 (503)
T PRK04813        156 GKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPI  235 (503)
T ss_pred             CCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCC
Confidence            999999999999998887777778888999999999999999987788999999999988753  357889999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC----CCc
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQ  313 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~  313 (518)
                      |.+..+|++++.+.........+++++|.++++|+++++.+.+++.+.+++..+++.||+||++..+......    ...
T Consensus       236 t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  315 (503)
T PRK04813        236 NVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQY  315 (503)
T ss_pred             eEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccC
Confidence            9999999999887766555556788999999999999999999999988788899999999997654432221    223


Q ss_pred             ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      ...++|.+.++++++|+|++|.+++.|+  .||+++ ++....+|+  .+...+...+.   ...+.+||+|||++++ +
T Consensus       316 ~~~~~g~~~~~~~~~i~d~~~~~~~~g~--~Gel~v~~~~~~~gy~--~~~~~~~~~~~---~~~g~~~~~tGD~~~~-~  387 (503)
T PRK04813        316 KRLPIGYAKPDSPLLIIDEEGTKLPDGE--QGEIVISGPSVSKGYL--NNPEKTAEAFF---TFDGQPAYHTGDAGYL-E  387 (503)
T ss_pred             CCCcccccCCCCEEEEECCCCCCCCCCC--ceEEEEeccccccccC--CChhHhHHhhc---cCCCceeEECCceEEe-e
Confidence            4567999999999999999999999998  699999 666555532  22222222211   1256679999999999 9


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      +|++++.||.+|+++++|.+++|.+||+.+. .+|+|.+++|++.+++..+ +.+++++++.++......++.+.+++++
T Consensus       388 ~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~  465 (503)
T PRK04813        388 DGLLFYQGRIDFQIKLNGYRIELEEIEQNLR-QSSYVESAVVVPYNKDHKV-QYLIAYVVPKEEDFEREFELTKAIKKEL  465 (503)
T ss_pred             CCeEEEeccccceEEECcEEeCHHHHHHHHH-hCCCcceEEEEEeeCCCCc-cEEEEEEEeccccccccchhHHHHHHHH
Confidence            9999999999999999999999999999997 8999999999997766655 7888888877643333456777888889


Q ss_pred             HhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          473 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       473 ~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      .++++++++|..+++++++|+|++||++|++|++++++
T Consensus       466 ~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~  503 (503)
T PRK04813        466 KERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK  503 (503)
T ss_pred             HhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence            89999999999999999999999999999999998763

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.8e-60  Score=491.18  Aligned_cols=449  Identities=17%  Similarity=0.171  Sum_probs=360.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++.+|+++
T Consensus        61 lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~  140 (516)
T PRK13383         61 LSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADN  140 (516)
T ss_pred             EeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEch
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...+.      ....    ......+..           ..   ..  .. ..     ...  +...++.++++||||||
T Consensus       141 ~~~~~------~~~~----~~~~~~~~~-----------~~---~~--~~-~~-----~~~--p~~~~~~~~il~TSGTT  186 (516)
T PRK13383        141 EFAER------IAGA----DDAVAVIDP-----------AT---AG--AE-ES-----GGR--PAVAAPGRIVLLTSGTT  186 (516)
T ss_pred             hHHHH------HHhh----hcceEEecc-----------ch---hh--hh-cC-----CCC--CCCCCCCcEEEECCCCC
Confidence            54311      1110    011111100           00   00  00 00     000  11234567899999999


Q ss_pred             CCCceEEeccchhH--HHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSI--RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~--~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |.||+|+++|....  ..........++.++|+++..+|++|.+|+..++.++..|+++++.. ..++..+++.++++++
T Consensus       187 G~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~  265 (516)
T PRK13383        187 GKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHR-HFDAEAALAQASLHRA  265 (516)
T ss_pred             CCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECC-CCCHHHHHHHHHHhCC
Confidence            99999999997421  11122233456788999999999999999988888899999998765 5678899999999999


Q ss_pred             cEEEechHHHHHHHhcccC--CCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCccc
Q 010114          238 TVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF  315 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~  315 (518)
                      |.+.++|.++..+.+....  ...+++++|.++++|+++++++.+++.+.+ +..+++.||+||++..............
T Consensus       266 t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~~~  344 (516)
T PRK13383        266 DAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALATPADLRDAP  344 (516)
T ss_pred             cEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-CchhhhcccccccccceeccccccccCC
Confidence            9999999999999876432  233578999999999999999999998877 5789999999999866554443333456


Q ss_pred             CCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCc
Q 010114          316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG  394 (518)
Q Consensus       316 ~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g  394 (518)
                      +++|.|+++++++|+|++|++++.|+  .|||++ ++....+|   .+...         ....++||+|||++++|++|
T Consensus       345 ~~~G~~~~~~~~~i~d~~~~~~~~g~--~Gel~v~g~~~~~~Y---~~~~~---------~~~~~g~~~TGDl~~~d~~G  410 (516)
T PRK13383        345 ETVGKPVAGCPVRILDRNNRPVGPRV--TGRIFVGGELAGTRY---TDGGG---------KAVVDGMTSTGDMGYLDNAG  410 (516)
T ss_pred             CcccCCCCCcEEEEECCCCCCCCCCC--ceEEEEecCcccccc---cCCch---------hheecCceecceeEEEcCCc
Confidence            78999999999999999999999998  699999 55555432   22111         11235799999999999999


Q ss_pred             eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114          395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS  474 (518)
Q Consensus       395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~  474 (518)
                      ++++.||.+|+++++|.+|+|.+||++|. ++|.|.++++++.+++..| +.+.++|++.++...+.+++.+.    +.+
T Consensus       411 ~l~i~GR~~~~i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~~~  484 (516)
T PRK13383        411 RLFIVGREDDMIISGGENVYPRAVENALA-AHPAVADNAVIGVPDERFG-HRLAAFVVLHPGSGVDAAQLRDY----LKD  484 (516)
T ss_pred             cEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-ceEEEEEEECCCCCCCHHHHHHH----HHH
Confidence            99999999999999999999999999997 9999999999999988777 88999999887655455554444    667


Q ss_pred             ccCCccccceEEEecCCCCCCCchhHHHHHH
Q 010114          475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLR  505 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~  505 (518)
                      +++++++|..+.++++||+|++||++|+.|+
T Consensus       485 ~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        485 RVSRFEQPRDINIVSSIPRNPTGKVLRKELP  515 (516)
T ss_pred             hcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence            7899999999999999999999999999873

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.1e-60  Score=538.46  Aligned_cols=487  Identities=19%  Similarity=0.197  Sum_probs=382.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF   80 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~   80 (518)
                      +||+||.++++++|+.|++.+++||+|+++++|+++++++++||+++|++++|+++..+++++.+++++++++.++++++
T Consensus       642 ~Ty~el~~~~~~~a~~L~~~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~  721 (1146)
T PRK08633        642 LSYGKALTGALALARLLKRELKDEENVGILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRK  721 (1146)
T ss_pred             CcHHHHHHHHHHHHHHHHHhCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHH
Confidence            69999999999999999766899999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCC--CCCCCCCCCCCCEEEEEeccCC
Q 010114           81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP--NYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ..+....... ..... .....+...+...  ..   .....+.+....... +..  .........++++++++|||||
T Consensus       722 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~i~~TSGT  793 (1146)
T PRK08633        722 FLEKLKNKGF-DLELP-ENVKVIYLEDLKA--KI---SKVDKLTALLAARLL-PARLLKRLYGPTFKPDDTATIIFSSGS  793 (1146)
T ss_pred             HHHHHhccCC-chhcc-cCceEEEeehhcc--cc---chhHHHHHHHHhccC-CHHHHHhhccCCCCCCCEEEEEECCCC
Confidence            5422110000 00000 0011111110000  00   000111111111100 000  0000123456899999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      ||.||+|.++|+++..+.......++..++|++++.+|++|.+++.. ++.++..|+++++.+...++..+++.++++++
T Consensus       794 TG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~  873 (1146)
T PRK08633        794 EGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRA  873 (1146)
T ss_pred             CCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCC
Confidence            99999999999999988887777788899999999999999999876 88899999999998766788999999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC------
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------  311 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~------  311 (518)
                      |++.++|++++.+.+.....+.+++++|.+++||+++++++.+++.+.+ +.++++.||+||+++.........      
T Consensus       874 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  952 (1146)
T PRK08633        874 TILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFK  952 (1146)
T ss_pred             eEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccccccCcceEEEecCcccccccc
Confidence            9999999999999887666667789999999999999999999998877 688999999999987655433211      


Q ss_pred             ---CcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccc
Q 010114          312 ---PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGD  386 (518)
Q Consensus       312 ---~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD  386 (518)
                         ....+++|.|+|+++++|+| +++++++.|+  .||+++ ++..+.+|  +.+++.+...+.+   .++++||+|||
T Consensus       953 ~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~--~Gel~v~g~~~~~gY--~~~~~~t~~~~~~---~~~~~~~~TGD 1025 (1146)
T PRK08633        953 RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGE--DGLILIGGPQVMKGY--LGDPEKTAEVIKD---IDGIGWYVTGD 1025 (1146)
T ss_pred             cccCCCCCCccccCCCCEEEEEcCCCCccCCCCC--ceEEEEcCCCccccc--cCCccchHHHhhc---CCCCCeEECCC
Confidence               13467899999999999999 5789999999  699999 77666553  2333333333322   24668999999


Q ss_pred             eEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCc--ccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHH
Q 010114          387 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE--SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL  464 (518)
Q Consensus       387 ~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~--~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l  464 (518)
                      ++++|+||++++.||.+|++|++|++|+|.+||+++. +||  .+.+++|++.+++..| +.++++++..   ..+.+++
T Consensus      1026 ~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~~~~~~~~v~~~~~~~~g-~~~~~~v~~~---~~~~~~l 1100 (1146)
T PRK08633       1026 KGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELA-KALGGEEVVFAVTAVPDEKKG-EKLVVLHTCG---AEDVEEL 1100 (1146)
T ss_pred             EEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHH-hccCCCCceEEEEeccCCCCC-cEEEEEEecC---ccCHHHH
Confidence            9999999999999999999999999999999999997 898  4667999999998888 8888888762   2344555


Q ss_pred             HHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          465 KMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       465 ~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      .+.+.   .+.+++|++|..+++++++|+|++||++|++|++++.+.
T Consensus      1101 ~~~~~---~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1101 KRAIK---ESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             HHHHH---hcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence            55432   247999999999999999999999999999999987654

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-60  Score=489.52  Aligned_cols=490  Identities=20%  Similarity=0.199  Sum_probs=373.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++|+++..+..++.++++.++++++|+++
T Consensus        36 ~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~  115 (540)
T PRK06164         36 LSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWP  115 (540)
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhcc-C-CCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114           80 FILRGGRKFPLYSKVLGA-A-PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      +.... .....+...... . ....++... ......+.. ....+.++...... .............+++++++||||
T Consensus       116 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSG  191 (540)
T PRK06164        116 GFKGI-DFAAILAAVPPDALPPLRAIAVVD-DAADATPAP-APGARVQLFALPDP-APPAAAGERAADPDAGALLFTTSG  191 (540)
T ss_pred             ccccc-cHHHHhhcccccccCCcceEEEec-cCcccCCCC-Cccccccccccccc-CCcccccccCCCCCceEEEEECCC
Confidence            53210 000111111100 0 011111111 000000000 00011111111000 000001112234588999999999


Q ss_pred             CCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          158 TTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |||.||+|+++|.++..+.......+++..++++++.+|++|.+|+..++.++..|+++++.+ ..++..+++.|+++++
T Consensus       192 tTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~  270 (540)
T PRK06164        192 TTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEP-VFDAARTARALRRHRV  270 (540)
T ss_pred             CCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecC-CCCHHHHHHHHHHhCC
Confidence            999999999999999988887777788899999999999999999988999999999998876 5678899999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccC-CCCCchhhhHhhhccccCceeccccccccceeEeecCCCC--Ccc
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG-ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQA  314 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~G-e~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~--~~~  314 (518)
                      |+++++|.++..+.+.. ....+++++|.+..+| .....+..+++...  ++++++.||+||++..+.......  ...
T Consensus       271 t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  347 (540)
T PRK06164        271 THTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPATDPVSVR  347 (540)
T ss_pred             eeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCCCCCCcce
Confidence            99999999999998872 3456788999887665 44445556666544  678999999999987655443322  122


Q ss_pred             cCCCCccc-ccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEe
Q 010114          315 FGAFSTAT-MTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT  391 (518)
Q Consensus       315 ~~~~g~~~-~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~  391 (518)
                      ..+.|.+. +++.++|+| +++.+++.|+  .|||++ ++..+.+|+  .++..+...+      ..++||+|||+|+++
T Consensus       348 ~~~~g~~~~~~~~~~i~d~~~~~~~~~g~--~Gel~v~g~~~~~gY~--~~~~~t~~~~------~~~~~~~TGDl~~~~  417 (540)
T PRK06164        348 IEGGGRPASPEARVRARDPQDGALLPDGE--SGEIEIRAPSLMRGYL--DNPDATARAL------TDDGYFRTGDLGYTR  417 (540)
T ss_pred             eccCccccCCCeEEEEecCCCCcCCCCCC--eeEEEEeccccccccc--CCchhhhhcc------cCCCceecCCeEEEc
Confidence            34567765 789999999 6789999998  699999 777776542  3333333222      245699999999999


Q ss_pred             cCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHH
Q 010114          392 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA  471 (518)
Q Consensus       392 ~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~  471 (518)
                      ++|.+++.||.+|+++++|.+|+|.+||+++. ++|+|.+++|++.+. .++ +.+++++++.++...+.+++.+.    
T Consensus       418 ~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~-~~~~v~~~~v~~~~~-~~~-~~~~~~vv~~~~~~~~~~~l~~~----  490 (540)
T PRK06164        418 GDGQFVYQTRMGDSLRLGGFLVNPAEIEHALE-ALPGVAAAQVVGATR-DGK-TVPVAFVIPTDGASPDEAGLMAA----  490 (540)
T ss_pred             CCceEEEEeecCCeEEECCEEcCHHHHHHHHH-hCCCceeEEEEecCC-CCc-eeEEEEEEeCCCCCCCHHHHHHH----
Confidence            99999999999999999999999999999997 899999999999873 344 78899999877655566555555    


Q ss_pred             HHhccCCccccceEEEecCCCCCCCc---hhHHHHHHHHHhcccccc
Q 010114          472 IQSKLNPLFKVSLVKVVPEFPRTASN---KLLRRVLRDQIKHELSVR  515 (518)
Q Consensus       472 ~~~~l~~~~~p~~i~~v~~~P~t~~G---Kv~R~~l~~~~~~~~~~~  515 (518)
                      +.++|+++++|..+++++.+|+|++|   |++|++|++++++.+...
T Consensus       491 ~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~~~  537 (540)
T PRK06164        491 CREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARLAAE  537 (540)
T ss_pred             HHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhhhhh
Confidence            66788999999999999999999999   999999999988776554

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=5.4e-60  Score=488.36  Aligned_cols=472  Identities=19%  Similarity=0.230  Sum_probs=369.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||.||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.++++.+++++
T Consensus        38 ~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~  117 (517)
T PRK08008         38 YSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSA  117 (517)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEec
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCC--CceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114           80 FILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      ...      +.+..+.+...  ...+......    ........++.++......   . .........+++++++||||
T Consensus       118 ~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~a~i~~TSG  183 (517)
T PRK08008        118 QFY------PMYRQIQQEDATPLRHICLTRVA----LPADDGVSSFTQLKAQQPA---T-LCYAPPLSTDDTAEILFTSG  183 (517)
T ss_pred             chh------HHHHHHHhhccccCcEEEEecCC----CcccccccCHHHHhccCCc---c-ccccCCCCCCCeEEEEECCC
Confidence            532      23333222211  1111111110    0111222344443332211   0 01112234689999999999


Q ss_pred             CCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114          158 TTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAG  236 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  236 (518)
                      |||.||+|+++|.++..+.........+.+++++++.+|++|..+... ++.++..|+++++.+ ..++..+++.+++++
T Consensus       184 tTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~  262 (517)
T PRK08008        184 TTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLE-KYSARAFWGQVCKYR  262 (517)
T ss_pred             CCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEcc-ccCHHHHHHHHHHcC
Confidence            999999999999999865443333345788999999999999877655 788899999998876 567889999999999


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccC
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG  316 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~  316 (518)
                      +|++.++|.+++.++..........++++.+.+++ .++++....+.+.+ +.++++.||+||++..+...........+
T Consensus       263 ~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  340 (517)
T PRK08008        263 ATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERF-GVRLLTSYGMTETIVGIIGDRPGDKRRWP  340 (517)
T ss_pred             CcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHh-CCeEEeeccccccccccccCCccccccCC
Confidence            99999999999998876544444456788776654 67788877777665 68899999999998655544444445567


Q ss_pred             CCCcccccccEEEECCCCCCCCCCCCeeeeeee-c---ccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          317 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F---PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       317 ~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      ++|.|+++++++|+|++|.+++.|+  .|||++ +   +.++.+|  +.+.+.+...+      ..++||+|||++++|+
T Consensus       341 ~~G~~~~g~~~~i~d~~~~~~~~g~--~Gel~v~g~~~~~~~~gy--~~~~~~~~~~~------~~~g~~~TGDl~~~~~  410 (517)
T PRK08008        341 SIGRPGFCYEAEIRDDHNRPLPAGE--IGEICIKGVPGKTIFKEY--YLDPKATAKVL------EADGWLHTGDTGYVDE  410 (517)
T ss_pred             ccccCCCCcEEEEECCCCCCCCCCC--cceEEEeCCCCcchhhhH--hCChHHHhhcc------cCCCCeeccceEEECC
Confidence            8999999999999999999999998  699999 4   2333332  22333323222      2456999999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      ||++++.||.+|+|+.+|.+|+|.+||+++. ++|.|.+++|++.+++..+ +.+.++++++++...+.+++.++    +
T Consensus       411 ~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~-~~~~v~~~~v~g~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----~  484 (517)
T PRK08008        411 EGFFYFVDRRCNMIKRGGENVSCVELENIIA-THPKIQDIVVVGIKDSIRD-EAIKAFVVLNEGETLSEEEFFAF----C  484 (517)
T ss_pred             CCcEEEeecccceEEeCCEEECHHHHHHHHH-hCCceeeEEEEccCCCCCC-ceEEEEEEECCCCCCCHHHHHHH----H
Confidence            9999999999999999999999999999997 9999999999999988777 88999999987655555555555    6


Q ss_pred             HhccCCccccceEEEecCCCCCCCchhHHHHHH
Q 010114          473 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR  505 (518)
Q Consensus       473 ~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~  505 (518)
                      .++++++++|..+++++++|+|++||++|+.|+
T Consensus       485 ~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        485 EQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             HhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence            678899999999999999999999999999874

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.7e-59  Score=483.49  Aligned_cols=478  Identities=20%  Similarity=0.210  Sum_probs=374.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||.||.++++++|++|.+. +++||+|+++++|+++++++++||+++|++++++++..+..++.++++.++++.++++.
T Consensus        12 ~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~~~   91 (509)
T PRK12406         12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHA   91 (509)
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeecccc-------ccCC-CCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEE
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAI-------GNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN  151 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (518)
                      ...+.      +....... ...+.....       .... ..........+.++......        ......+++++
T Consensus        92 ~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~a~  156 (509)
T PRK12406         92 DLLHG------LASALPAG-VTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP--------YDGPPVPQPQS  156 (509)
T ss_pred             chhhh------hhhhhhcc-cceeecccccccccccccccccccCCCCccCHHHHhcccCc--------cCCCCCCCceE
Confidence            54321      11111000 000000000       0000 00011223345544322111        11224589999


Q ss_pred             EEeccCCCCCCceEEeccchhH---HHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHH
Q 010114          152 ILFSSGTTGEPKAIPWTQLSSI---RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSF  228 (518)
Q Consensus       152 i~~TSGtTG~pK~v~~s~~~~~---~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  228 (518)
                      ++|||||||.||+|.++|.+..   .........+++.++++++..+|++|..+....+.++..|+++++.+ ..++..+
T Consensus       157 i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~  235 (509)
T PRK12406        157 MIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQP-RFDPEEL  235 (509)
T ss_pred             EEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEcc-CCCHHHH
Confidence            9999999999999998776543   33333344567889999999999999988766666788999988876 5678999


Q ss_pred             HHHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEee
Q 010114          229 GKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ  306 (518)
Q Consensus       229 ~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~  306 (518)
                      ++.++++++|.+.++|+++..+++...  ....+++++|.++.+|+++++++.+++.+.+ +..+++.||+||++.+...
T Consensus       236 ~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~  314 (509)
T PRK12406        236 LQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTFA  314 (509)
T ss_pred             HHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceEec
Confidence            999999999999999999999987643  2345678999999999999999999998766 5789999999999986655


Q ss_pred             cCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceecccc
Q 010114          307 GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG  385 (518)
Q Consensus       307 ~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG  385 (518)
                      +........+++|.|.+++.++++|+++++++.|+  .||+++ ++.+... .++.++..+. ..      ..++||+||
T Consensus       315 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~--~Gel~v~~~~~~~~-~y~~~~~~~~-~~------~~~~~~~TG  384 (509)
T PRK12406        315 TSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGE--IGEIYSRIAGNPDF-TYHNKPEKRA-EI------DRGGFITSG  384 (509)
T ss_pred             CcccccccCCCcCccCCCcEEEEECCCCCCCCCCC--ceEEEEECCccccc-cccCCchhcc-cc------cCCCCeEEc
Confidence            44433445678999999999999999999999998  699999 5544322 1122222222 11      245799999


Q ss_pred             ceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHH
Q 010114          386 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK  465 (518)
Q Consensus       386 D~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~  465 (518)
                      |+++++++|++++.||.+|++|++|.+|+|.+||+.|. ++|+|.++++++.+++..+ +.+++++++.++...+.+++.
T Consensus       385 D~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~  462 (509)
T PRK12406        385 DVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLH-AVPGVHDCAVFGIPDAEFG-EALMAVVEPQPGATLDEADIR  462 (509)
T ss_pred             cEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeeeccccC-ceeEEEEEECCCCCCCHHHHH
Confidence            99999999999999999999999999999999999997 8999999999999888777 888899988765444555555


Q ss_pred             HHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          466 MIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       466 ~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      +.    +.+.++++++|..+.+++++|+|.+||++|++|++.+...
T Consensus       463 ~~----l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~  504 (509)
T PRK12406        463 AQ----LKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWAN  504 (509)
T ss_pred             HH----HHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhh
Confidence            54    6678899999999999999999999999999999987654

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=7.9e-61  Score=588.79  Aligned_cols=464  Identities=20%  Similarity=0.213  Sum_probs=385.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++.
T Consensus       537 ~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~  616 (5163)
T PRK12316        537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQS  616 (5163)
T ss_pred             EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEECh
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ........         ......+.+..               ...++...     ..........++++++++||||||
T Consensus       617 ~~~~~~~~---------~~~~~~~~~~~---------------~~~~~~~~-----~~~~~~~~~~~~~~a~ii~TSGST  667 (5163)
T PRK12316        617 HLGRKLPL---------AAGVQVLDLDR---------------PAAWLEGY-----SEENPGTELNPENLAYVIYTSGST  667 (5163)
T ss_pred             hhhhhCCc---------ccCceEEEecC---------------cchhhccC-----CCCCCCCCCCCCCeEEEEECCCcC
Confidence            54211100         00001111100               00000100     011112234568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC--CCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~~i~~~~~  237 (518)
                      |.||||+++|.++++.+.+....+++.++|++++..|++|+.++..++.+|..|+++++.++  ..++..+++.++++++
T Consensus       668 G~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~v  747 (5163)
T PRK12316        668 GKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGV  747 (5163)
T ss_pred             CCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCC
Confidence            99999999999999999888888899999999999999999999889999999999999864  3567899999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecC-CCCCcccC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS-LLQPQAFG  316 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~-~~~~~~~~  316 (518)
                      |++.++|++++.|++..  ...+++++|.+++|||++++++.+.+.+.+++++++|.||+||+++.++... ........
T Consensus       748 t~~~~~Ps~~~~l~~~~--~~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~  825 (5163)
T PRK12316        748 DTLHFVPSMLQAFLQDE--DVASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSV  825 (5163)
T ss_pred             eEEEeCHHHHHHHHhcc--ccccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCC
Confidence            99999999999998754  2346789999999999999999999887777889999999999985433222 22234456


Q ss_pred             CCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCce
Q 010114          317 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY  395 (518)
Q Consensus       317 ~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  395 (518)
                      ++|+|++|++++|+|++++++|.|+  .|||+| |+++..+|  +.+++.+...|...++.++.+||+|||+|++++||.
T Consensus       826 ~iG~p~~~~~~~i~d~~~~~~p~G~--~GEl~i~G~~v~~GY--l~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~  901 (5163)
T PRK12316        826 PIGRPIANLACYILDANLEPVPVGV--LGELYLAGRGLARGY--HGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGV  901 (5163)
T ss_pred             CCccccCCCEEEEECCCCCCCCCCC--ceEEEecccccChhh--CCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCC
Confidence            8999999999999999999999999  699999 77777654  345555666666666667889999999999999999


Q ss_pred             EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 010114          396 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK  475 (518)
Q Consensus       396 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~  475 (518)
                      |+++||.||+||++|++|+|.|||++|. +||+|.+++|++.+    + +.++++|++.++.....++    +++++.++
T Consensus       902 l~~~GR~d~~ik~~G~rI~~~EIE~~l~-~~p~V~~a~V~~~~----~-~~lva~vv~~~~~~~~~~~----l~~~l~~~  971 (5163)
T PRK12316        902 IEYAGRIDHQVKLRGLRIELGEIEARLL-EHPWVREAAVLAVD----G-KQLVGYVVLESEGGDWREA----LKAHLAAS  971 (5163)
T ss_pred             EEeecccCCEEEEceEEcChHHHHHHHH-hCCCcceEEEEEcC----C-CeEEEEEEccCCCCCCHHH----HHHHHHhh
Confidence            9999999999999999999999999997 99999999999886    4 7899999987754444444    45557788


Q ss_pred             cCCccccceEEEecCCCCCCCchhHHHHHHHHHh
Q 010114          476 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK  509 (518)
Q Consensus       476 l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~  509 (518)
                      |++|++|..|+++++||+|++||++|++|.+...
T Consensus       972 Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316        972 LPEYMVPAQWLALERLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred             CCCccCCCeEEEHhhCCCCCCCChhHHhhcCccc
Confidence            9999999999999999999999999999987543

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.4e-60  Score=488.69  Aligned_cols=466  Identities=19%  Similarity=0.183  Sum_probs=361.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-c-CCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v-~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|..|.+. + ++||+|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++
T Consensus        27 lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~  106 (540)
T PRK13388         27 WTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTD  106 (540)
T ss_pred             eeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEC
Confidence            69999999999999999999 8 899999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ++...      .+... .......+.+.             ...+.+++.....     ..+.....++++++++|||||
T Consensus       107 ~~~~~------~~~~~-~~~~~~~i~~~-------------~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGT  161 (540)
T PRK13388        107 AEHRP------LLDGL-DLPGVRVLDVD-------------TPAYAELVAAAGA-----LTPHREVDAMDPFMLIFTSGT  161 (540)
T ss_pred             hhhhH------HHHhh-cccCceEEEcc-------------chhhhhhhccccC-----cCCCCCCCCCCeEEEEECCCC
Confidence            75431      11111 00011111110             0122233221111     011112456999999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      ||.||+|.++|.++..........+++.++|+++..+|++|..++.. ++.++..|+++++.+ ..++..+++.++++++
T Consensus       162 TG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~v  240 (540)
T PRK13388        162 TGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPA-KFSASGFLDDVRRYGA  240 (540)
T ss_pred             CCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECC-CCCHHHHHHHHHHhCC
Confidence            99999999999999887777677788999999999999999999876 556888999988765 5678899999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      |++..+|..+..++..........++++.+ + |+.++++....+.+.+ ++++++.||+||++.++....   ....++
T Consensus       241 t~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~---~~~~~~  314 (540)
T PRK13388        241 TYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVREP---GTPPGS  314 (540)
T ss_pred             eEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHh-CCceecccccccccceeecCC---CCCCCC
Confidence            999999999999887654322223456633 3 5566777777777666 688999999999987654332   234578


Q ss_pred             CCcccccccEE-----------EECCCCCCCCC-CCCeeeeeee--cccccCCccccccccccceeeeCCCCCCCceecc
Q 010114          318 FSTATMTAGLV-----------ILDECGVPYPD-DQPCVGEVGL--FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRR  383 (518)
Q Consensus       318 ~g~~~~~~~~~-----------i~~~~g~~~~~-~~~~~Gel~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (518)
                      +|.|++++++.           ++|++|.++.. +.  +|||++  ++.++.+|  +.++..+...+       .++||+
T Consensus       315 vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~--~GEl~v~~g~~~~~gY--~~~~~~t~~~~-------~~g~~~  383 (540)
T PRK13388        315 IGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA--IGELVNTAGAGFFEGY--YNNPEATAERM-------RHGMYW  383 (540)
T ss_pred             CCCCCCCcEEEcCCCCccccceeccCccccccCCCc--ceEEEEecCCcccccc--cCChHHHHHHh-------hcCcee
Confidence            99999987653           45556665533 33  699998  44444442  22222222211       136999


Q ss_pred             ccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhH
Q 010114          384 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK  463 (518)
Q Consensus       384 TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~  463 (518)
                      |||+|++|+||++++.||.+|+|+++|++|+|.+||++|. .||+|.+++|++.+++..| +.+++++++.++...+.++
T Consensus       384 TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~g~~~~~~g-~~~~~~v~~~~~~~~~~~~  461 (540)
T PRK13388        384 SGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILL-RHPAINRVAVYAVPDERVG-DQVMAALVLRDGATFDPDA  461 (540)
T ss_pred             ccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHH-hCCCceEEEEEEccCCCCC-ceeEEEEEECCCCcCCHHH
Confidence            9999999999999999999999999999999999999997 8999999999999988888 7888888888766666667


Q ss_pred             HHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          464 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       464 l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      +.++++.  ...|+++++|..++++++||+|++||++|++|+++..+...
T Consensus       462 l~~~l~~--~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~~~  509 (540)
T PRK13388        462 FAAFLAA--QPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWATGD  509 (540)
T ss_pred             HHHHHHh--hccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCCCC
Confidence            7766542  23699999999999999999999999999999998765533

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.4e-60  Score=491.43  Aligned_cols=484  Identities=23%  Similarity=0.285  Sum_probs=374.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.+++.++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|..+.+++..+++.++++.+++++
T Consensus        50 ~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~  129 (563)
T PRK06710         50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLD  129 (563)
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEec
Confidence            69999999999999999998 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCC--------------------cccccchhhhhccCCCCCCCCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL--------------------REQDLSWKDFLSSVDYHPRPNYY  139 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~  139 (518)
                      .....      .............++.........+.                    ......+..+....     ....
T Consensus       130 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  198 (563)
T PRK06710        130 LVFPR------VTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEV-----NTGV  198 (563)
T ss_pred             cchhh------hhccchhhccceeEEeccccccccccccccchhhcccccccccccccchhhhhhhhhhcc-----cccc
Confidence            43211      11111111111111100000000000                    00000111111100     0011


Q ss_pred             CCCCCCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhccc-cccCC-CCcEEEeecCchhhhhhHH-HHHhhhcCcEE
Q 010114          140 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLK-VGDVYCWPTNLGWVMGPVI-LFSSFLNGATL  216 (518)
Q Consensus       140 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~-~~~~~-~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~  216 (518)
                      .......+++++++|||||||.||+|.++|.++..+...... .+... ..+++++.+|++|.+++.. ++.+++.|+++
T Consensus       199 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~  278 (563)
T PRK06710        199 EVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKM  278 (563)
T ss_pred             ccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeE
Confidence            111223578999999999999999999999998765432222 12333 3467899999999999865 66788999999


Q ss_pred             EEecCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceecccc
Q 010114          217 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG  296 (518)
Q Consensus       217 ~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg  296 (518)
                      ++.+ ..++..+++.|+++++|++.++|+++..+++.......+++++|.+++||+++++++.+++.+.+ +.++++.||
T Consensus       279 ~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG  356 (563)
T PRK06710        279 VLIP-KFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVT-GGKLVEGYG  356 (563)
T ss_pred             EEcC-CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHHHHHHHhh-CCCEecccc
Confidence            9876 56788999999999999999999999999887655566788999999999999999999988766 678999999


Q ss_pred             ccccceeEeecCCCCCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCC
Q 010114          297 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMP  374 (518)
Q Consensus       297 ~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~  374 (518)
                      +||++..............+++|.|.+++.++++| +++.+++.|+  .|||++ ++..+.+|+  .+.+.+...+    
T Consensus       357 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~--~Gel~v~g~~~~~gY~--~~~~~~~~~~----  428 (563)
T PRK06710        357 LTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGE--IGEIVVKGPQIMKGYW--NKPEETAAVL----  428 (563)
T ss_pred             cccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCC--ceEEEEecCccchhhh--CChHHHhhhc----
Confidence            99998765444333334457899999999999998 7889999998  599999 666555432  2333333222    


Q ss_pred             CCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEec
Q 010114          375 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK  454 (518)
Q Consensus       375 ~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~  454 (518)
                         .++||+|||+++++++|.+++.||.+|+|+++|.+|+|.+||+++. ++|.|.+++|++.+++..| +.++++++..
T Consensus       429 ---~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~  503 (563)
T PRK06710        429 ---QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLY-EHEKVQEVVTIGVPDPYRG-ETVKAFVVLK  503 (563)
T ss_pred             ---ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHH-hCcceeeEEEEccccCCcC-ceeEEEEEEC
Confidence               2469999999999999999999999999999999999999999997 9999999999999988878 8899999988


Q ss_pred             CCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          455 KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       455 ~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      ++...+.+++.+.    +.++++++++|..+.++++||+|++||++|+.|+++++.+-+-
T Consensus       504 ~~~~~~~~~l~~~----~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~~~  559 (563)
T PRK06710        504 EGTECSEEELNQF----ARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRKNED  559 (563)
T ss_pred             CCCCCCHHHHHHH----HHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhcCcc
Confidence            7655555555554    6678999999999999999999999999999999998876543

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=7.6e-60  Score=491.68  Aligned_cols=480  Identities=20%  Similarity=0.256  Sum_probs=372.3

Q ss_pred             CCHHHHHHHHHHHHHHHh-hc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~-~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|+.|+ +. +++||+|+++++|+++++++++||+++|++++|++|.++..++..+++.++++++|++
T Consensus        51 ~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~  130 (560)
T PRK08751         51 ITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVI  130 (560)
T ss_pred             eeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEc
Confidence            699999999999999997 46 9999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccC-------------------CCCCCcccccchhhhhccCCCCCCCCCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND-------------------VGIPLREQDLSWKDFLSSVDYHPRPNYY  139 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (518)
                      +...      ..+.......+...++.......                   ...-.......+.+.......    ...
T Consensus       131 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  200 (560)
T PRK08751        131 DNFG------TTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRK----HSM  200 (560)
T ss_pred             chhH------HHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCCCccccHHHHHhccCC----CCC
Confidence            7432      11122221111111111100000                   000000112233333322111    011


Q ss_pred             CCCCCCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcccccc----CCCC-cEEEeecCchhhhhhHH-HHHhhhcC
Q 010114          140 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID----LKVG-DVYCWPTNLGWVMGPVI-LFSSFLNG  213 (518)
Q Consensus       140 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~----~~~~-d~~l~~~pl~~~~~~~~-~~~~l~~G  213 (518)
                      .......+++++++|||||||.||+|.++|.++..+.......+.    +..+ +++++..|++|.+++.. .+.++..|
T Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  280 (560)
T PRK08751        201 PTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIG  280 (560)
T ss_pred             CCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhcc
Confidence            122345689999999999999999999999999887765444433    3333 56788899999999864 66777788


Q ss_pred             cEEEEecCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceec
Q 010114          214 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE  293 (518)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~  293 (518)
                      ++.++.....++..+++.++++++|.+.++|.++..+.+.......+++++|.+++||+++++.+.+.+.+.+ +..+++
T Consensus       281 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~  359 (560)
T PRK08751        281 GCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVT-GLTLVE  359 (560)
T ss_pred             ceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHHh-CCeEEE
Confidence            8887776666788999999999999999999999999987665667788999999999999999998888765 678999


Q ss_pred             cccccccceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeC
Q 010114          294 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG  372 (518)
Q Consensus       294 ~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~  372 (518)
                      .||+||++..+..+........+++|.|++++.++++|++|.+++.|+  .|||++ ++....+|  +.++..+...+  
T Consensus       360 ~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~--~Gel~v~~~~~~~gy--~~~~~~~~~~~--  433 (560)
T PRK08751        360 AYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGE--IGELCIKGPQVMKGY--WKRPEETAKVM--  433 (560)
T ss_pred             eeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCC--ceEEEEecCccchhh--cCChhhhhhcc--
Confidence            999999987665554433345678999999999999999999999998  699999 66555432  22333222222  


Q ss_pred             CCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEE
Q 010114          373 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV  452 (518)
Q Consensus       373 ~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~  452 (518)
                          .+++||+|||+|+++++|++++.||.+|+++++|.+|+|.+||++|. .+|+|.+++|++.+++..| +.+.++++
T Consensus       434 ----~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~g-e~~~~~v~  507 (560)
T PRK08751        434 ----DADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA-MMPGVLEVAAVGVPDEKSG-EIVKVVIV  507 (560)
T ss_pred             ----ccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHH-hCcCeeeeEEEecCCCCCC-ceEEEEEE
Confidence                24579999999999999999999999999999999999999999997 9999999999999988777 77777776


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHH
Q 010114          453 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI  508 (518)
Q Consensus       453 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~  508 (518)
                      ... ...+.+++.+.    +.++++++++|..++++++||+|++||++|+.|++..
T Consensus       508 ~~~-~~~~~~~l~~~----~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~~  558 (560)
T PRK08751        508 KKD-PALTAEDVKAH----ARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAA  558 (560)
T ss_pred             cCC-CCCCHHHHHHH----HHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHhh
Confidence            543 33444455544    6678899999999999999999999999999998774

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.4e-60  Score=486.25  Aligned_cols=467  Identities=19%  Similarity=0.178  Sum_probs=360.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|+++.++++++.+++.+++++.+++++
T Consensus        25 lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  104 (501)
T PRK13390         25 VSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASA  104 (501)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999976


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      .........  ....+... ..      ......+.+.......         .....+++++++||||||
T Consensus       105 ~~~------~~~~~~~~~--~~~~~~~~-~~------~~~~~~~~~~~~~~~~---------~~~~~~~~a~i~~TSGTT  160 (501)
T PRK13390        105 ALD------GLAAKVGAD--LPLRLSFG-GE------IDGFGSFEAALAGAGP---------RLTEQPCGAVMLYSSGTT  160 (501)
T ss_pred             hhh------hHHHHhhhc--cceEEEec-Cc------ccccccHHHHhcccCC---------CCCCCcccEEEEeCCCCC
Confidence            421      011110000  00011100 00      0011122222111100         001223579999999999


Q ss_pred             CCCceEEe--ccchhHHHh----hhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHH
Q 010114          160 GEPKAIPW--TQLSSIRCT----AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ  233 (518)
Q Consensus       160 G~pK~v~~--s~~~~~~~~----~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~  233 (518)
                      |.||+|.+  +|.++....    ......+.+..+|+++..+|++|..++......+..|+++++.+ ..++..+++.|+
T Consensus       161 G~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~  239 (501)
T PRK13390        161 GFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAK-RFDAQATLGHVE  239 (501)
T ss_pred             CCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcC-CcCHHHHHHHHH
Confidence            99999995  455544321    11123456788999999999999998765444567899988765 567899999999


Q ss_pred             HcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC
Q 010114          234 DAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ  311 (518)
Q Consensus       234 ~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~  311 (518)
                      ++++|.+.++|+++..+++...  ....+++++|.++.+|+++++++.+.+.+.+ +..+++.||+||++.++.......
T Consensus       240 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~  318 (501)
T PRK13390        240 RYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDSPDW  318 (501)
T ss_pred             HcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecchhh
Confidence            9999999999999999987543  2345678999999999999999998888765 578999999999987554433322


Q ss_pred             CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEE
Q 010114          312 PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR  390 (518)
Q Consensus       312 ~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~  390 (518)
                      ....+++|.|+++ .++|+|++|++++.|+  .|||++ ++....+|  +.+++.+...+.    ...++|++|||+|++
T Consensus       319 ~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~--~Gel~v~~~~~~~gy--~~~~~~t~~~~~----~~~~~w~~tGDl~~~  389 (501)
T PRK13390        319 LAHPGSVGRSVLG-DLHICDDDGNELPAGR--IGTVYFERDRLPFRY--LNDPEKTAAAQH----PAHPFWTTVGDLGSV  389 (501)
T ss_pred             ccCCCCcCCcccc-eEEEECCCCCCCCCCC--ceEEEEecCCccccc--cCChhhhHHhhc----cCCCceEEcCceEEE
Confidence            3456789999999 6999999999999999  699999 66555442  222222222221    123579999999999


Q ss_pred             ecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHH
Q 010114          391 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK  470 (518)
Q Consensus       391 ~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~  470 (518)
                      |+||++++.||.+|+++++|.+|+|.+||++|. .||+|.++++++.+++..+ +.+++++++.++...+ +++.+.+.+
T Consensus       390 ~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~~~-e~~~~~v~~~~~~~~~-~~~~~~l~~  466 (501)
T PRK13390        390 DEDGYLYLADRKSFMIISGGVNIYPQETENALT-MHPAVHDVAVIGVPDPEMG-EQVKAVIQLVEGIRGS-DELARELID  466 (501)
T ss_pred             CCCCeEEEeeccccceeECCeeeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-ceeEEEEEecCCCCcc-hhhHHHHHH
Confidence            999999999999999999999999999999997 8999999999999998888 8899999887654332 234456777


Q ss_pred             HHHhccCCccccceEEEecCCCCCCCchhHHHHHH
Q 010114          471 AIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR  505 (518)
Q Consensus       471 ~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~  505 (518)
                      .+.++|+.+++|..++++++||+|++||++|++|+
T Consensus       467 ~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        467 YTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             HHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence            78889999999999999999999999999999874

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5.3e-61  Score=581.67  Aligned_cols=473  Identities=20%  Similarity=0.207  Sum_probs=386.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||+++++++|+.|.+. +++|++|++++++++++++++|||+++|++++|++|.++.+++.+++++++++++|+++
T Consensus      1600 lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~ 1679 (3956)
T PRK12467       1600 LTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQS 1679 (3956)
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeCh
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .......         .........+..               ..+++...     ..........++++++++||||||
T Consensus      1680 ~~~~~~~---------~~~~~~~~~~~~---------------~~~~~~~~-----~~~~~~~~~~~~~~ayiiyTSGST 1730 (3956)
T PRK12467       1680 HLQARLP---------LPDGLRSLVLDQ---------------EDDWLEGY-----SDSNPAVNLAPQNLAYVIYTSGST 1730 (3956)
T ss_pred             hhhhhCc---------cccCCcEEEecc---------------ccchhccC-----CCCCCCCCCCCcCcEEEEECCCcC
Confidence            5321110         000011111110               00010100     011112234568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~  237 (518)
                      |.||||+++|.+++..+.+....+++.++|+++...|++|+.++..++.++..|+++++.++.  .++..+++.|+++++
T Consensus      1731 G~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~v 1810 (3956)
T PRK12467       1731 GRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQV 1810 (3956)
T ss_pred             CCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCC
Confidence            999999999999999988887888999999999999999999988899999999999998753  357899999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC----CCc
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQ  313 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~  313 (518)
                      |++.++|++++.|.+.. ....+++++|.+++|||+++++..+.+.+.+++..++|.||+||+++.++.....    ...
T Consensus      1811 t~~~~~Ps~~~~l~~~~-~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~ 1889 (3956)
T PRK12467       1811 TTLHFVPSMLQQLLQMD-EQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGR 1889 (3956)
T ss_pred             eEEECCHHHHHHHHhhc-cccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccC
Confidence            99999999999998753 2334678999999999999999999888887778899999999998765433221    112


Q ss_pred             ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCC-CCceeccccceEEEe
Q 010114          314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRT  391 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~TGD~~~~~  391 (518)
                      ...++|+|+++++++|+|++++++|.|.  .|||++ |+++..+|  +.++..+...|...+.. .+.+||+|||+|+++
T Consensus      1890 ~~~~iG~p~~~~~~~vld~~~~~vp~G~--~GEl~i~G~~v~~GY--l~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~ 1965 (3956)
T PRK12467       1890 DSVPIGQPIANLSTYILDASLNPVPIGV--AGELYLGGVGLARGY--LNRPALTAERFVADPFGTVGSRLYRTGDLARYR 1965 (3956)
T ss_pred             CCCCcccccCCCEEEEECCCCCCCCCCC--ceEEEeccccccccc--cCChhhhhhhCcCCCCCCCCccceeccceEEEC
Confidence            3568999999999999999999999999  699999 77766654  33455556666555554 477899999999999


Q ss_pred             cCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC----ChhHHHHH
Q 010114          392 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS----QPDKLKMI  467 (518)
Q Consensus       392 ~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~----~~~~l~~~  467 (518)
                      +||.|+++||.||+||++|++|+|.|||++|. ++|+|.+++|++.+ ...+ +.++++++..++...    ......+.
T Consensus      1966 ~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~-~~p~V~~a~vv~~~-~~~~-~~lva~vv~~~~~~~~~~~~~~~~~~~ 2042 (3956)
T PRK12467       1966 ADGVIEYLGRIDHQVKIRGFRIELGEIEARLR-EQGGVREAVVIAQD-GANG-KQLVAYVVPTDPGLVDDDEAQVALRAI 2042 (3956)
T ss_pred             CCCCEEEecccCceEEeCeEEechHHHHHHHH-hCCCcceEEEEEec-CCCC-cEEEEEEEecCcccccccccccccHHH
Confidence            99999999999999999999999999999997 99999999999886 3344 789999987654221    11234556


Q ss_pred             HHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          468 FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       468 ~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      ++++++++|+.||+|..++++++||+|++||++|++|++....
T Consensus      2043 l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidr~~L~~~~~~ 2085 (3956)
T PRK12467       2043 LKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAPDAS 2085 (3956)
T ss_pred             HHHHHHhhCchhhCchhhhhhhcCCCCCCCCcchhhCCCCccc
Confidence            7777889999999999999999999999999999999875443

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=7.6e-61  Score=588.91  Aligned_cols=466  Identities=19%  Similarity=0.192  Sum_probs=383.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||+++++++|+.|.+. +++|++|++++++++++++++|||+++|++++||+|.++.+++.+++++++++++|+++
T Consensus      2029 lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~ 2108 (5163)
T PRK12316       2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQR 2108 (5163)
T ss_pred             EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeCh
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .......         .......+.+..               ...+...      +.........++++++++||||||
T Consensus      2109 ~~~~~~~---------~~~~~~~~~~~~---------------~~~~~~~------~~~~~~~~~~~~~~a~ii~TSGST 2158 (5163)
T PRK12316       2109 HLLERLP---------LPAGVARLPLDR---------------DAEWADY------PDTAPAVQLAGENLAYVIYTSGST 2158 (5163)
T ss_pred             hhhhhcc---------cccccceEeccc---------------hhhhhcc------CccCCCCCCCCCCeEEEEeCccCC
Confidence            5431110         000000000000               0000000      011112234679999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC-CCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t  238 (518)
                      |.||||+++|.++.+.+......++++++|+++.+.|++|+.++..++.+|+.|+++++.+. ..++..+++.|+++++|
T Consensus      2159 G~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt 2238 (5163)
T PRK12316       2159 GLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVT 2238 (5163)
T ss_pred             CCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCe
Confidence            99999999999999999888888899999999999999999998889999999999976553 24678999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCC----cc
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP----QA  314 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~----~~  314 (518)
                      ++.++|++++.+.+...... ..++||.+++|||++++++.+.+.+.+++.+++|.||+||++..++.......    ..
T Consensus      2239 ~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~ 2317 (5163)
T PRK12316       2239 ILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAA 2317 (5163)
T ss_pred             EEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCCC
Confidence            99999999999987653322 33589999999999999999999887777889999999999875543322211    12


Q ss_pred             cCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCC-CCceeccccceEEEec
Q 010114          315 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTV  392 (518)
Q Consensus       315 ~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~TGD~~~~~~  392 (518)
                      ..++|+|+++++++|+|++++++|.|+  +|||+| |+++..+|  +.+++.+...|..++.. .+.+||+|||+|++++
T Consensus      2318 ~~~iG~p~~~~~~~i~d~~~~~vp~g~--~GEl~i~G~~v~~GY--~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~ 2393 (5163)
T PRK12316       2318 YVPIGRALGNRRAYILDADLNLLAPGM--AGELYLGGEGLARGY--LNRPGLTAERFVPDPFSASGERLYRTGDLARYRA 2393 (5163)
T ss_pred             cCCcccccCCCEEEEECCCCCCCCCCC--eeEEEecchhhcccc--cCChhhhhhhccCCCCCCCCCeeEecccEEEEcC
Confidence            358999999999999999999999999  699999 77766654  34555566666555543 3778999999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      ||.|+++||.||+||++|++|+|.|||.+|. ++|+|.+++|++.++. .+ +.+++||+++++...+.++++    +++
T Consensus      2394 dG~l~~~GR~d~~iki~G~rie~~eIE~~l~-~~~~v~~a~v~~~~~~-~~-~~l~a~v~~~~~~~~~~~~l~----~~l 2466 (5163)
T PRK12316       2394 DGVVEYLGRIDHQVKIRGFRIELGEIEARLQ-AHPAVREAVVVAQDGA-SG-KQLVAYVVPDDAAEDLLAELR----AWL 2466 (5163)
T ss_pred             CCcEEEecCCCCeEEEcCccCChHHHHHHHh-hCcccceEEEEEEecC-CC-eEEEEEEEecCCCccCHHHHH----HHH
Confidence            9999999999999999999999999999997 9999999999988765 55 899999998876544444444    447


Q ss_pred             HhccCCccccceEEEecCCCCCCCchhHHHHHHHHH
Q 010114          473 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI  508 (518)
Q Consensus       473 ~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~  508 (518)
                      .++||.|++|..++++++||+|++||++|++|++..
T Consensus      2467 ~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2467 AARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             HhhCchhcCcceEeeecccCCCCCCccCHhhcCCCc
Confidence            788999999999999999999999999999998754

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-59  Score=489.26  Aligned_cols=479  Identities=23%  Similarity=0.264  Sum_probs=372.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|+++++++++||+++|++++|+++..+..++.++++.++++++|+++
T Consensus        49 lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~  128 (557)
T PRK07059         49 ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLE  128 (557)
T ss_pred             eeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEch
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccC------------------CCCCCcccccchhhhhccCCCCCCCCCCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGND------------------VGIPLREQDLSWKDFLSSVDYHPRPNYYSP  141 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (518)
                      ....      ......................                  ...........+.+++.....    .....
T Consensus       129 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  198 (557)
T PRK07059        129 NFAT------TVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGAR----QTFKP  198 (557)
T ss_pred             hhHH------HHHHhhcccCCceeEEecccccccccccccccccccccccccccCCCCcccHHHHhhccCC----CCCCC
Confidence            5421      1111111111111111000000                  000011223344444433221    11122


Q ss_pred             CCCCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhccccc----cC---CCCcEEEeecCchhhhhhHH-HHHhhhcC
Q 010114          142 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----DL---KVGDVYCWPTNLGWVMGPVI-LFSSFLNG  213 (518)
Q Consensus       142 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~----~~---~~~d~~l~~~pl~~~~~~~~-~~~~l~~G  213 (518)
                      ....++++++++|||||||.||+|+++|.+++.++......+    ..   .....+++.+|++|.+++.. .+.++..|
T Consensus       199 ~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g  278 (557)
T PRK07059        199 VKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTG  278 (557)
T ss_pred             CCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhc
Confidence            334568999999999999999999999999887654322111    11   12346788999999998754 67788889


Q ss_pred             cEEEEecCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceec
Q 010114          214 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE  293 (518)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~  293 (518)
                      ++.++.+...++..+++.++++++|.+.++|.++..+.+.......+++++|.++.||+++++.+.+.+.+.+ ++++++
T Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~  357 (557)
T PRK07059        279 GRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLEMT-GCPITE  357 (557)
T ss_pred             ceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEeccccCCHHHHHHHHHHh-CCCeee
Confidence            9988877556778899999999999999999999999887766667788999999999999999988888765 688999


Q ss_pred             cccccccceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeC
Q 010114          294 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG  372 (518)
Q Consensus       294 ~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~  372 (518)
                      .||+||++.++..+.........++|.|++++.++|+|++|.+++.|+  .|||++ ++..+.+|.  .+...+...+  
T Consensus       358 ~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~--~Gel~v~g~~~~~gY~--~~~~~~~~~~--  431 (557)
T PRK07059        358 GYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGE--PGEICIRGPQVMAGYW--NRPDETAKVM--  431 (557)
T ss_pred             ccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCC--ceEEEEeCCccchhhh--cCHHHHhhhc--
Confidence            999999987655444433344678999999999999999999999998  699999 665554432  2222222111  


Q ss_pred             CCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEE
Q 010114          373 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV  452 (518)
Q Consensus       373 ~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~  452 (518)
                          ..++||+|||++++++||++++.||.+|+++++|.+|+|.+||+++. ++|+|.+++|++.+++..| +.++++++
T Consensus       432 ----~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~-~~~~V~~~~v~~~~~~~~g-e~~~~~v~  505 (557)
T PRK07059        432 ----TADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVA-SHPGVLEVAAVGVPDEHSG-EAVKLFVV  505 (557)
T ss_pred             ----ccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHH-hCCceeEEEEEecccCCCC-eeEEEEEE
Confidence                24579999999999999999999999999999999999999999997 8999999999999888777 88888888


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHH
Q 010114          453 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       453 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~  507 (518)
                      ..+. ..+.+++.+    .+.+++++++.|..+.+++++|+|.+||++|++|+++
T Consensus       506 ~~~~-~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        506 KKDP-ALTEEDVKA----FCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             eCCC-CCCHHHHHH----HHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence            6542 334444444    4667889999999999999999999999999999865

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-59  Score=483.86  Aligned_cols=464  Identities=20%  Similarity=0.191  Sum_probs=366.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||.||.++++++|++|++.  +++|++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++|++
T Consensus        29 ~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~  108 (529)
T PRK07867         29 TSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTE  108 (529)
T ss_pred             EeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEEC
Confidence            69999999999999999996  7899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      +....      .+....    ....++..           ....+.+++.....    .........++++++++|||||
T Consensus       109 ~~~~~------~~~~~~----~~~~~~~~-----------~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~i~~TSGT  163 (529)
T PRK07867        109 SAHAE------LLDGLD----PGVRVINV-----------DSPAWADELAAHRD----AEPPFRVADPDDLFMLIFTSGT  163 (529)
T ss_pred             HhHHH------HHHhhc----cCceEEEe-----------ccccHHHHhcccCC----CCCCcccCCccceEEEEECCCC
Confidence            85431      111111    11111110           01123333332211    1112223456899999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      ||.||+|+++|.++..+.......+++..+|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.++++++
T Consensus       164 TG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~v  242 (529)
T PRK07867        164 SGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRR-KFSASGFLPDVRRYGA  242 (529)
T ss_pred             CCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecC-CCCHHHHHHHHHHhCC
Confidence            99999999999999888877777788899999999999999999876 667888999988875 5678899999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      |++.++|+.+..++...+......+++|. +.||+.+++.. ..+.+.+ ++++++.||+||++.......   ....++
T Consensus       243 t~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~~---~~~~~~  316 (529)
T PRK07867        243 TYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRTP---DTPPGA  316 (529)
T ss_pred             eEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccCC---CCCCCC
Confidence            99999999999988765433333457774 56888877664 4555555 678999999999986543222   234567


Q ss_pred             CCcccccccEEEEC-CCCCCCCCCC----------Ceeeeeee--cccccCCccccccccccceeeeCCCCCCCceeccc
Q 010114          318 FSTATMTAGLVILD-ECGVPYPDDQ----------PCVGEVGL--FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH  384 (518)
Q Consensus       318 ~g~~~~~~~~~i~~-~~g~~~~~~~----------~~~Gel~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T  384 (518)
                      +|.|+++  ++++| +++.+++.|+          ..+||+++  ++..+.+|  +.+...+...+       .++||+|
T Consensus       317 ~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy--~~~~~~~~~~~-------~~g~~~T  385 (529)
T PRK07867        317 LGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGY--YNDPEADAERM-------RGGVYWS  385 (529)
T ss_pred             cCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccc--cCChHhhhhhh-------cCCeEee
Confidence            8999998  66777 6788888776          11499987  44444432  12222222111       2469999


Q ss_pred             cceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHH
Q 010114          385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL  464 (518)
Q Consensus       385 GD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l  464 (518)
                      ||+++++++|++++.||.+|+++++|.+|+|.+||++|. +||+|.+++|++.+++..| +.+++++++.++...+.+++
T Consensus       386 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~~~V~g~~~~~~g-~~~~a~vv~~~~~~~~~~~l  463 (529)
T PRK07867        386 GDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILL-RYPDATEVAVYAVPDPVVG-DQVMAALVLAPGAKFDPDAF  463 (529)
T ss_pred             ccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCCCCC-eeEEEEEEECCCCCCCHHHH
Confidence            999999999999999999999999999999999999998 8999999999999998888 89999999988766777777


Q ss_pred             HHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          465 KMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       465 ~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      .+++++  ...|+++++|..|++++++|+|++||++|+.|++++...
T Consensus       464 ~~~~~~--~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~  508 (529)
T PRK07867        464 AEFLAA--QPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDC  508 (529)
T ss_pred             HHHHHh--hccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCC
Confidence            777643  245999999999999999999999999999999987543

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-59  Score=486.02  Aligned_cols=486  Identities=20%  Similarity=0.184  Sum_probs=372.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++||+|+++++|+++|++++|||+++|++++++++.++.+++.++++.++++.+++++
T Consensus        29 ~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~  108 (533)
T PRK07798         29 LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYER  108 (533)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEch
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ..+.++.........++...... ......+.+++.+++......  .   ... ...++.++++||||||
T Consensus       109 ~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~---~~~-~~~~~~~~i~~TSGTT  175 (533)
T PRK07798        109 EFA------PRVAEVLPRLPKLRTLVVVEDGS-GNDLLPGAVDYEDALAAGSPE--R---DFG-ERSPDDLYLLYTGGTT  175 (533)
T ss_pred             hhH------HHHHHHhccCCCccEEEEecCCc-ccccCCccccHHHHHhccCCc--C---CCC-CCCCCceEEEECCCCC
Confidence            432      22222222211111111111111 111112345666666543321  1   111 1223457899999999


Q ss_pred             CCCceEEeccchhHHHhhhcccc---------ccC------CCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC-CC
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAH---------IDL------KVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SP  223 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~---------~~~------~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~-~~  223 (518)
                      |.||+|+++|.++..+.......         ..+      ..+++++..+|++|..++..++.+++.|+++++.+. ..
T Consensus       176 G~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~  255 (533)
T PRK07798        176 GMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRF  255 (533)
T ss_pred             CCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCCCc
Confidence            99999999999987654432211         111      567889999999999999888999999999999873 45


Q ss_pred             ChhHHHHHHHHcCccEEEechHHHH-HHHhccc-CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccc
Q 010114          224 LERSFGKFVQDAGVTVLGTVPSLVK-AWRNTNC-LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS  301 (518)
Q Consensus       224 ~~~~~~~~i~~~~~t~l~~~P~~~~-~l~~~~~-~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~  301 (518)
                      ++..+++.++++++|.+.++|..+. .+.+... ....+++++|.++++|+++++++.+++.+.+++..+++.||+||++
T Consensus       256 ~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  335 (533)
T PRK07798        256 DADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETG  335 (533)
T ss_pred             CHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccc
Confidence            6889999999999999999986553 3333322 3345678999999999999999999999887778899999999987


Q ss_pred             eeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCcee
Q 010114          302 SAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCL  381 (518)
Q Consensus       302 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (518)
                      ..............+. +.+.++..++|+|++|.+++.|+.+.|+++.++....+|  +.++..+...+.   ...+.+|
T Consensus       336 ~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~~~~~~gy--~~~~~~t~~~f~---~~~~~~~  409 (533)
T PRK07798        336 FGGSGTVAKGAVHTGG-PRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLGY--YKDPEKTAETFP---TIDGVRY  409 (533)
T ss_pred             cccccCCCCCCccCCC-CccCCCceEEEECCCCCCCCCCCCCeeEEEeecCccccc--cCChhhhHHhhc---cCCCCce
Confidence            6544332211111111 367889999999999999999885447777765544432  223222222221   1356789


Q ss_pred             ccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCCh
Q 010114          382 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP  461 (518)
Q Consensus       382 ~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~  461 (518)
                      |+|||++++|++|++++.||.+|+++.+|.+|+|.+||+++. ++|.|.+++|++.++...+ +.+.++++++++...+.
T Consensus       410 ~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~  487 (533)
T PRK07798        410 AIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALK-AHPDVADALVVGVPDERWG-QEVVAVVQLREGARPDL  487 (533)
T ss_pred             EEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHH-hCccceeEEEEeccCcccC-ceEEEEEEECCCCCCCH
Confidence            999999999999999999999999999999999999999997 8999999999999887777 88889998887655566


Q ss_pred             hHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          462 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       462 ~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      +++.++    +.++|++|++|..+++++++|+|++||++|+.|+++++++
T Consensus       488 ~~l~~~----l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~~  533 (533)
T PRK07798        488 AELRAH----CRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAER  533 (533)
T ss_pred             HHHHHH----HhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhccC
Confidence            666665    5567889999999999999999999999999999998864

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-59  Score=489.99  Aligned_cols=484  Identities=20%  Similarity=0.213  Sum_probs=371.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||.||.+++.++|++|.+. +++||+|+++++|+++++++++||+++|++++|++|..+..++.++++.++++++++++
T Consensus        59 ~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~  138 (567)
T PRK06178         59 ITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALD  138 (567)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCC----CCCc-------ccccchhhhhccCCCCCCCCCCCCCCCCCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG----IPLR-------EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA  148 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (518)
                      ...      +.+.+.........++.........    ....       .....+.+++.....  .+.........+++
T Consensus       139 ~~~------~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  210 (567)
T PRK06178        139 QLA------PVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRA--CTAPVPLPPPALDA  210 (567)
T ss_pred             chH------HHHHHhhccCCcceEEEeccccccccccccccccccccccccccccccHHHHhhc--cccccccCCCCCCC
Confidence            543      2222222222222222111100000    0000       000112222221111  01111122245689


Q ss_pred             EEEEEeccCCCCCCceEEeccchhHHHhhhccc-cccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChh
Q 010114          149 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLER  226 (518)
Q Consensus       149 ~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~-~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~  226 (518)
                      +++++|||||||.||+|+++|.+++.+...... .....+.|+++..+|++|++|+.. ++.+++.|+++++.+ ..++.
T Consensus       211 ~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~-~~~~~  289 (567)
T PRK06178        211 LAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA-RWDAV  289 (567)
T ss_pred             eEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC-CCCHH
Confidence            999999999999999999999998876544332 256788999999999999999854 888999999999987 56789


Q ss_pred             HHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhh--ccCCCCCchhhhHhhhccccCceeccccccccceeE
Q 010114          227 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA--STGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY  304 (518)
Q Consensus       227 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~--~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~  304 (518)
                      .++..++++++|.+.++|..+..+++.......+++++|.+.  ..|+.+++++.+.+.+.++...+.+.||+||++...
T Consensus       290 ~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~  369 (567)
T PRK06178        290 AFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCD  369 (567)
T ss_pred             HHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccc
Confidence            999999999999999999999999876655556677888754  446899999999988776433344689999987643


Q ss_pred             eecCC--CC----CcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCC
Q 010114          305 IQGSL--LQ----PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMY  376 (518)
Q Consensus       305 ~~~~~--~~----~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (518)
                      .....  ..    ....+++|.|++|++++|+| +++.+++.|+  +|||++ ++.++.+|.  .+.+.+...+      
T Consensus       370 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~--~Gel~v~g~~v~~gY~--~~~~~~~~~~------  439 (567)
T PRK06178        370 TFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGA--EGEIVVRTPSLLKGYW--NKPEATAEAL------  439 (567)
T ss_pred             eeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCC--ceEEEEECCccccccc--CChhhhhhcc------
Confidence            32211  11    22356789999999999999 7899999998  699999 766665532  2222222222      


Q ss_pred             CCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCC
Q 010114          377 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG  456 (518)
Q Consensus       377 ~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~  456 (518)
                       .++||+|||++++++||+++++||.+|+++++|.+|+|.+||+++. ++|+|.++++++.+++..| +.+++++++.++
T Consensus       440 -~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~  516 (567)
T PRK06178        440 -RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLG-QHPAVLGSAVVGRPDPDKG-QVPVAFVQLKPG  516 (567)
T ss_pred             -cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHH-hCCCeeEEEEEcCcCcccC-cceEEEEEeCCC
Confidence             1469999999999999999999999999999999999999999997 8999999999999888777 889999998776


Q ss_pred             CCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          457 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       457 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      ...+.+++.+.    +.++++++++|. +.+++++|+|++||++|++|++++.+.
T Consensus       517 ~~~~~~~l~~~----~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~  566 (567)
T PRK06178        517 ADLTAAALQAW----CRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL  566 (567)
T ss_pred             CcCCHHHHHHH----HHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence            55555555554    667889999996 888999999999999999999998753

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.2e-60  Score=481.60  Aligned_cols=440  Identities=20%  Similarity=0.187  Sum_probs=358.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF   80 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~   80 (518)
                      +||+||.++++++|..|+    ++|+|+++++|+++++++++||+++|++++|+++..+..++..+++.++++++++++.
T Consensus        26 ~Ty~el~~~~~~~a~~L~----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~  101 (471)
T PRK07787         26 LSRSDLAGAATAVAERVA----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAP  101 (471)
T ss_pred             EEHHHHHHHHHHHHHHhc----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecCC
Confidence            699999999999999985    5799999999999999999999999999999999999999999999999999999762


Q ss_pred             hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCCC
Q 010114           81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG  160 (518)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  160 (518)
                      ..        .    ...........             .         ...      .......++++++++|||||||
T Consensus       102 ~~--------~----~~~~~~~~~~~-------------~---------~~~------~~~~~~~~~~~a~i~~TSGTTG  141 (471)
T PRK07787        102 DD--------P----AGLPHVPVRLH-------------A---------RSW------HRYPEPDPDAPALIVYTSGTTG  141 (471)
T ss_pred             cc--------c----ccccceeeecc-------------c---------ccc------ccCCCCCCCceEEEEECCCCCC
Confidence            10        0    00000000000             0         000      0001124589999999999999


Q ss_pred             CCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          161 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       161 ~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      .||+|.++|.++...+......+++..+|+++..+|++|.+|+.. ++.+++.|+++++.+ ..++..+++.++ +++|.
T Consensus       142 ~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~-~~~t~  219 (471)
T PRK07787        142 PPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTG-RPTPEAYAQALS-EGGTL  219 (471)
T ss_pred             CCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecC-CCCHHHHHHHHh-hCceE
Confidence            999999999999998877777788899999999999999999876 889999999998876 567899999999 99999


Q ss_pred             EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCC
Q 010114          240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS  319 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g  319 (518)
                      +.++|+++..+++... ....++++|.+++||+++++++.+++.+.+ +.++++.||+||++...... .......+++|
T Consensus       220 ~~~~P~~~~~l~~~~~-~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~-~~~~~~~~~vG  296 (471)
T PRK07787        220 YFGVPTVWSRIAADPE-AARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTR-ADGERRPGWVG  296 (471)
T ss_pred             EEcchHHHHHHHhCcc-ccccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecC-CCCcccCCccc
Confidence            9999999999987542 234578999999999999999999988766 57899999999998654333 22334567899


Q ss_pred             cccccccEEEECCCCCCCCC-CCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEE
Q 010114          320 TATMTAGLVILDECGVPYPD-DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII  397 (518)
Q Consensus       320 ~~~~~~~~~i~~~~g~~~~~-~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~  397 (518)
                      .|++++.++|+|++|.+++. ++ .+|||++ ++....+|+  .+...+...+      ..++||+|||+|++++||+++
T Consensus       297 ~~~~g~~~~i~d~~~~~~~~~~~-~~Gei~v~g~~~~~gy~--~~~~~t~~~~------~~~~~~~TGDlg~~~~dg~l~  367 (471)
T PRK07787        297 LPLAGVETRLVDEDGGPVPHDGE-TVGELQVRGPTLFDGYL--NRPDATAAAF------TADGWFRTGDVAVVDPDGMHR  367 (471)
T ss_pred             ccCCCcEEEEECCCCCCCCCCCC-CceEEEEECcccchhhc--CChhhchhcc------cCCCceecCceEEEcCCCCEE
Confidence            99999999999999988873 33 2599999 666554432  2333222222      234699999999999999999


Q ss_pred             Eeecc-CCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          398 VQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       398 ~~gR~-~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      +.||. +|+++.+|.+|+|.+||++|. .+|.|.+++|++.+++..+ +.++++++..+  ..+.+++.++    ++++|
T Consensus       368 ~~GR~~d~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~v~~~~--~~~~~~l~~~----l~~~l  439 (471)
T PRK07787        368 IVGRESTDLIKSGGYRIGAGEIETALL-GHPGVREAAVVGVPDDDLG-QRIVAYVVGAD--DVAADELIDF----VAQQL  439 (471)
T ss_pred             EeCCCCceeEeeCCEEECHHHHHHHHH-hCCCcceEEEEcccccccC-eEEEEEEEeCC--CCCHHHHHHH----HHhhc
Confidence            99996 899999999999999999997 8999999999999888777 89999998733  2344555444    66788


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHH
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRD  506 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~  506 (518)
                      +++++|..++++++||+|++||++|+.|++
T Consensus       440 ~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~  469 (471)
T PRK07787        440 SVHKRPREVRFVDALPRNAMGKVLKKQLLS  469 (471)
T ss_pred             ccccCCcEEEEeccCCCCCCccccHHHhcc
Confidence            999999999999999999999999999975

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.1e-59  Score=484.84  Aligned_cols=473  Identities=23%  Similarity=0.279  Sum_probs=378.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||.||.++++++|++|.+. +++|++|+++++|+++|+++++||+++|++++|+++.++..++.++++.++++.+|+++
T Consensus        31 ~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~  110 (508)
T TIGR02262        31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSG  110 (508)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEch
Confidence            69999999999999999988 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ...      +.+.......+.. .++.... .      ......+.++......     ...+....++++++++|||||
T Consensus       111 ~~~------~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGT  172 (508)
T TIGR02262       111 ELL------PVIKAALGKSPHLEHRVVVGR-P------EAGEVQLAELLATESE-----QFKPAATQADDPAFWLYSSGS  172 (508)
T ss_pred             hhH------HHHHHHHhcCCCccEEEEeCC-C------CcccccHHHHhhcCCC-----ccCCCCCCCCCcEEEEeCCCC
Confidence            432      2222222111111 1111111 0      0112233343332111     112223446899999999999


Q ss_pred             CCCCceEEeccchhHHHhhh-ccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114          159 TGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAG  236 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~-~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  236 (518)
                      ||.||+|.++|.++...+.. ....++++++|+++..+|++|.+++.. ++.++..|+++++.++..++..+++.|++++
T Consensus       173 TG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  252 (508)
T TIGR02262       173 TGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQ  252 (508)
T ss_pred             CCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHC
Confidence            99999999999999877654 334567899999999999999999865 7788999999999887778899999999999


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccC
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG  316 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~  316 (518)
                      +|.+.++|.++..++..........+++|.++++|+++++++.+.+.+.+ ++++++.||+||++.+...+.. .....+
T Consensus       253 ~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~  330 (508)
T TIGR02262       253 PTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNLP-GDVRYG  330 (508)
T ss_pred             CcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCCc-cCCCCC
Confidence            99999999999888766544444567999999999999999999998877 6789999999999876554432 233457


Q ss_pred             CCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCce
Q 010114          317 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY  395 (518)
Q Consensus       317 ~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  395 (518)
                      ++|.|++++.++++|+++.+++.|+  .||+++ ++....+|  +.+++.+...+       .++||+|||+++++++|.
T Consensus       331 ~~G~~~~g~~v~i~d~~~~~~~~g~--~Gel~i~~~~~~~gY--~~~~~~~~~~~-------~~~~~~TGD~~~~~~~g~  399 (508)
T TIGR02262       331 TSGKPVPGYRLRLVGDGGQDVAAGE--PGELLISGPSSATMY--WNNRAKTRDTF-------QGEWTRSGDKYVRNDDGS  399 (508)
T ss_pred             CcCCCCCCcEEEEECCCCCCCCCCC--eeEEEEecCcccccc--CCCHHHhHhhh-------hcCceeccceEEEcCCcc
Confidence            8999999999999999999999998  699999 65554442  22222222111       246999999999999999


Q ss_pred             EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 010114          396 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK  475 (518)
Q Consensus       396 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~  475 (518)
                      +++.||.+|+++++|.+++|.+||+.|. .+++|.++++++.++...+ +.+.+++++.++... .+.+.+.+++.++++
T Consensus       400 ~~~~gR~~d~i~~~G~~v~~~~ie~~l~-~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~~i~~~~~~~  476 (508)
T TIGR02262       400 YTYAGRTDDMLKVSGIYVSPFEIESALI-QHPAVLEAAVVGVEDEDGL-IKPKAFIVLRPGQDI-DTALETELKEHVKDR  476 (508)
T ss_pred             EEEeccccceeeeCCEEECHHHHHHHHH-hCCCeeEEEEEeccccCCC-ceeEEEEEeCCCCcc-ccccHHHHHHHHHHh
Confidence            9999999999999999999999999997 8999999999998776666 788899988765432 234555677778889


Q ss_pred             cCCccccceEEEecCCCCCCCchhHHHHHHHH
Q 010114          476 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       476 l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~  507 (518)
                      |++++.|..+.+++++|+|++||++|+.|++|
T Consensus       477 l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~  508 (508)
T TIGR02262       477 LAPYKYPRWIVFVDDLPKTATGKIQRFKLREG  508 (508)
T ss_pred             cccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence            99999999999999999999999999998753

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=4.9e-60  Score=497.47  Aligned_cols=486  Identities=19%  Similarity=0.181  Sum_probs=361.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+|+.++++++|++|.+. +++||+|+|+++|++||+++++||+++|++++|+++.++++++.++++.++++++|+++
T Consensus        77 ~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~  156 (660)
T PLN02430         77 KTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQD  156 (660)
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECH
Confidence            49999999999999999999 99999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCC-----CCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG-----IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      ....     ..+............++........     ........+|.+++..+...+    .......++++++++|
T Consensus       157 ~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~iiy  227 (660)
T PLN02430        157 KKIK-----ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENP----SETNPPKPLDICTIMY  227 (660)
T ss_pred             HHHH-----HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCC----CCCCCcCcCceEEEEE
Confidence            4210     1111111111111111111110000     000112346677665443211    1112235689999999


Q ss_pred             ccCCCCCCceEEeccchhHHHhhhccc---c--ccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHH
Q 010114          155 SSGTTGEPKAIPWTQLSSIRCTAEGWA---H--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFG  229 (518)
Q Consensus       155 TSGtTG~pK~v~~s~~~~~~~~~~~~~---~--~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~  229 (518)
                      ||||||.||||++||.+++.++.....   .  ..+.++|++++.+|++|.++....+.++..|+++++.+.  ++..++
T Consensus       228 TSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~--~~~~l~  305 (660)
T PLN02430        228 TSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHG--DLNALR  305 (660)
T ss_pred             CCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCC--ChhhHH
Confidence            999999999999999999887664322   1  246788999999999999998776677899999988753  567899


Q ss_pred             HHHHHcCccEEEechHHHHHHHhcccC---------------------------------CC-CC----------c-cch
Q 010114          230 KFVQDAGVTVLGTVPSLVKAWRNTNCL---------------------------------EG-LD----------W-TKI  264 (518)
Q Consensus       230 ~~i~~~~~t~l~~~P~~~~~l~~~~~~---------------------------------~~-~~----------l-~~l  264 (518)
                      +.|++.+||++.++|.+++.+.+....                                 .. .+          + +++
T Consensus       306 ~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~l  385 (660)
T PLN02430        306 DDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRL  385 (660)
T ss_pred             HHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeE
Confidence            999999999999999999887642100                                 00 00          1 579


Q ss_pred             hhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEEC--CCC-CCCCCCC
Q 010114          265 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD--ECG-VPYPDDQ  341 (518)
Q Consensus       265 r~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~--~~g-~~~~~~~  341 (518)
                      |.+++||+++++++.++++ .++++.++++||+||+++.+...........+++|.|.+++++++.|  +.| .+.+.+.
T Consensus       386 r~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~  464 (660)
T PLN02430        386 RLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPP  464 (660)
T ss_pred             EEEEECCCCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCC
Confidence            9999999999999876665 44456799999999998765544333334568999999999999986  333 3444444


Q ss_pred             Ceeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeee-CceecchhHHH
Q 010114          342 PCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIE  419 (518)
Q Consensus       342 ~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~~iE  419 (518)
                        .|||++ ++.++.+|  +.+++.+...+       .++||+|||+|++|+||+|++.||.+|+||+ +|++|+|.+||
T Consensus       465 --~GEi~vrg~~v~~GY--~~~~e~t~~~~-------~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE  533 (660)
T PLN02430        465 --RGEICVRGKCLFSGY--YKNPELTEEVM-------KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLE  533 (660)
T ss_pred             --cceEEecCCCccccc--cCChHHhhhhh-------hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHH
Confidence              599999 77777653  33333333222       3579999999999999999999999999996 79999999999


Q ss_pred             HHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC----------C------CChhHHHHHHHHHH-----HhccCC
Q 010114          420 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------T------SQPDKLKMIFSKAI-----QSKLNP  478 (518)
Q Consensus       420 ~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~----------~------~~~~~l~~~~~~~~-----~~~l~~  478 (518)
                      .++. +||.|.+++|++..   .+ +.++|+|++.++.          .      .+..++++.+.+.+     +++|+.
T Consensus       534 ~~l~-~~p~V~~~~V~G~~---~~-~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~  608 (660)
T PLN02430        534 NVYG-QNPIVEDIWVYGDS---FK-SMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRG  608 (660)
T ss_pred             HHHh-cCCCeeEEEEEecC---Cc-ceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCC
Confidence            9997 99999999999832   23 6888999886521          0      01123444443333     346999


Q ss_pred             ccccceEEEecC-C-----CCCCCchhHHHHHHHHHhccccc
Q 010114          479 LFKVSLVKVVPE-F-----PRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       479 ~~~p~~i~~v~~-~-----P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      |.+++.|.+.++ +     ..|+++|+.|+.+.+.|+++|+.
T Consensus       609 ~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~  650 (660)
T PLN02430        609 FEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDE  650 (660)
T ss_pred             ceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHH
Confidence            999999999864 2     48999999999999999988764

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.5e-59  Score=477.64  Aligned_cols=475  Identities=20%  Similarity=0.166  Sum_probs=375.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|+++++++++||+++|++++|+++.++..++.++++.++++++|+++
T Consensus        12 ~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~   91 (502)
T PRK08276         12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSA   91 (502)
T ss_pred             EEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCC--CceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114           80 FILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      ...      .......+...  ...+.... ..      ......+.+.......        ......++.++++||||
T Consensus        92 ~~~------~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TSG  150 (502)
T PRK08276         92 ALA------DTAAELAAELPAGVPLLLVVA-GP------VPGFRSYEEALAAQPD--------TPIADETAGADMLYSSG  150 (502)
T ss_pred             chh------hHHHHHhhhccccccEEEEeC-CC------CCccccHHHHHhcCCC--------CCCCCCCcceEEEECCC
Confidence            533      11111111111  11111110 00      0112234443322110        11123467899999999


Q ss_pred             CCCCCceEEeccchhHHHh------hhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHH
Q 010114          158 TTGEPKAIPWTQLSSIRCT------AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKF  231 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~~~------~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~  231 (518)
                      |||.||+|.++|.++....      ...........++++++..|++|..++...+.++..|+++++.+ ..++..+++.
T Consensus       151 tTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~  229 (502)
T PRK08276        151 TTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVME-KFDAEEALAL  229 (502)
T ss_pred             CCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcC-CCCHHHHHHH
Confidence            9999999999987754322      11112222356788999999999999877778899999998876 5778999999


Q ss_pred             HHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCC
Q 010114          232 VQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL  309 (518)
Q Consensus       232 i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~  309 (518)
                      ++++++|++.++|+++..+++...  ....+++++|.++++|++++.++.+++.+.+ +..+++.||+||++.++.....
T Consensus       230 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~  308 (502)
T PRK08276        230 IERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITSE  308 (502)
T ss_pred             HHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecCc
Confidence            999999999999999999987653  2345688999999999999999999998776 5779999999999876555444


Q ss_pred             CCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114          310 LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII  388 (518)
Q Consensus       310 ~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~  388 (518)
                      ......+++|.|+ +..++++|+++.+++.|+  .||+++ ++....+|  +.++..+...+      ..++||+|||++
T Consensus       309 ~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~--~Gel~v~~~~~~~gy--~~~~~~~~~~~------~~~~~~~TGD~~  377 (502)
T PRK08276        309 DWLAHPGSVGKAV-LGEVRILDEDGNELPPGE--IGTVYFEMDGYPFEY--HNDPEKTAAAR------NPHGWVTVGDVG  377 (502)
T ss_pred             cccccCCCcceec-ccEEEEECCCCCCCcCCC--ceEEEEECCCccchh--cCCHHHHHHHh------cCCCceeecceE
Confidence            3344567899999 889999999999999998  699999 56655432  22322222222      223799999999


Q ss_pred             EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114          389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF  468 (518)
Q Consensus       389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~  468 (518)
                      +++++|.+++.||.+|+++++|.+|++.+||.++. ++|+|.++++++..++..+ +.++++++++++... .+.+.+.+
T Consensus       378 ~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~~i  454 (502)
T PRK08276        378 YLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLV-THPKVADVAVFGVPDEEMG-ERVKAVVQPADGADA-GDALAAEL  454 (502)
T ss_pred             EEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeCCCcccC-ceEEEEEEECCCCCC-ChhhHHHH
Confidence            99999999999999999999999999999999998 8999999999999988877 899999998875443 34455567


Q ss_pred             HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      .+.+.++|++++.|..+++++++|+|++||++|++|++.+-..-
T Consensus       455 ~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~  498 (502)
T PRK08276        455 IAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEGR  498 (502)
T ss_pred             HHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhhh
Confidence            77788999999999999999999999999999999999976543

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1e-59  Score=494.11  Aligned_cols=477  Identities=15%  Similarity=0.100  Sum_probs=355.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchh-----HHHHHHHHHhcCceE
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA-----AREIATRLRVSKAKG   74 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~-----~~~i~~~l~~~~~~~   74 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|+++|++++|||+++|++++|+++.++     .+++.++++.+++++
T Consensus        70 ~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~  149 (614)
T PRK08180         70 LTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGL  149 (614)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcE
Confidence            69999999999999999999 999999999999999999999999999999999999988     789999999999999


Q ss_pred             EEechhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           75 IFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        75 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      +|+++....    ...+.... ......+...  ...    ......++.+++.....  ...........++++++|+|
T Consensus       150 li~~~~~~~----~~~~~~~~-~~~~~~i~~~--~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ily  216 (614)
T PRK08180        150 VFADDGAAF----ARALAAVV-PADVEVVAVR--GAV----PGRAATPFAALLATPPT--AAVDAAHAAVGPDTIAKFLF  216 (614)
T ss_pred             EEEcCHHHH----HHHHhhhc-cCCceEEEec--CCC----CCcccccHHHHhccccc--cchhhhccCCCcCceEEEEE
Confidence            999753100    00011100 1111111111  000    00112455665543211  00011111235689999999


Q ss_pred             ccCCCCCCceEEeccchhHHHhhhccccccCC--CCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCCh---hHH
Q 010114          155 SSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK--VGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLE---RSF  228 (518)
Q Consensus       155 TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~--~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~---~~~  228 (518)
                      ||||||.||||++||.++..+.......++..  ..+++++.+|++|.+++.. ++.+++.|+++++.+..+++   ..+
T Consensus       217 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~  296 (614)
T PRK08180        217 TSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDET  296 (614)
T ss_pred             CCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHH
Confidence            99999999999999999988877655555553  5689999999999999865 77899999999987643333   467


Q ss_pred             HHHHHHcCccEEEechHHHHHHHhcccC----CCCCccchhhhhccCCCCCchhhhHhhhc----cc-cCceeccccccc
Q 010114          229 GKFVQDAGVTVLGTVPSLVKAWRNTNCL----EGLDWTKIRSFASTGETSNVDDDLWLSSK----AW-YNAIIESCGGTE  299 (518)
Q Consensus       229 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~----~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~----~~-~~~i~~~yg~tE  299 (518)
                      ++.++++++|+++++|.++..|++....    ....++++|.+++||+++++++.+++.+.    ++ +.++++.||+||
T Consensus       297 l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE  376 (614)
T PRK08180        297 LRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTE  376 (614)
T ss_pred             HHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccc
Confidence            8889999999999999999998875321    23457899999999999999998888764    21 367999999999


Q ss_pred             cceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCC
Q 010114          300 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKG  378 (518)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (518)
                      ++.++..... .....+++|+|+++++++++|+.       .  .|||++ ++.++.+|  +.+++.+...+      ..
T Consensus       377 ~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~d~~-------~--~GEi~vrg~~v~~GY--~~~p~~t~~~~------~~  438 (614)
T PRK08180        377 TAPSATFTTG-PLSRAGNIGLPAPGCEVKLVPVG-------G--KLEVRVKGPNVTPGY--WRAPELTAEAF------DE  438 (614)
T ss_pred             cCCceEeccc-ccCCCCcccCccCCcEEEEecCC-------C--CcEEEEecCccchhh--cCChhHhHhhc------cc
Confidence            9866554333 23456899999999999999852       2  399999 77666553  22333332222      34


Q ss_pred             ceeccccceEEE----ecCceEEEeeccCCeee-eCceecc--hhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEE
Q 010114          379 MCLRRHGDIIKR----TVGGYIIVQGRADDTMN-LGGIKTS--SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV  451 (518)
Q Consensus       379 ~~~~~TGD~~~~----~~~g~l~~~gR~~d~i~-~~G~~v~--~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v  451 (518)
                      ++||+|||+|++    |++|+++++||.+|+++ .+|++|+  |.|+|.++. .||.|.+++|++.++     +.+.++|
T Consensus       439 dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~-~~p~V~~a~V~g~~~-----~~~~a~V  512 (614)
T PRK08180        439 EGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSA-GAPLVQDVVITGHDR-----DEIGLLV  512 (614)
T ss_pred             CCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhh-cCchhheEEEEcCCC-----CceEEEE
Confidence            689999999999    46899999999999888 4798776  778889987 899999999999875     3566888


Q ss_pred             EecCCC---------------CCChhHHHHHHHHHHHhc----cCCccccceEEEecCCCCC------CCchhHHHHHHH
Q 010114          452 VLKKGF---------------TSQPDKLKMIFSKAIQSK----LNPLFKVSLVKVVPEFPRT------ASNKLLRRVLRD  506 (518)
Q Consensus       452 ~~~~~~---------------~~~~~~l~~~~~~~~~~~----l~~~~~p~~i~~v~~~P~t------~~GKv~R~~l~~  506 (518)
                      +++++.               ..+.+++.+++++.+.+.    ...+.+|+++++++++|++      ++||+.|+.+.+
T Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~  592 (614)
T PRK08180        513 FPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLA  592 (614)
T ss_pred             EcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHH
Confidence            876541               124455667666655321    1223389999999999975      566899999999


Q ss_pred             HHhccccc
Q 010114          507 QIKHELSV  514 (518)
Q Consensus       507 ~~~~~~~~  514 (518)
                      .|+++|+.
T Consensus       593 ~y~~~i~~  600 (614)
T PRK08180        593 RRAALVEA  600 (614)
T ss_pred             HhHHHHHH
Confidence            99998874

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-59  Score=508.51  Aligned_cols=466  Identities=16%  Similarity=0.127  Sum_probs=348.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|+++++++++||+++|++++|++|.   .++.++++.++++++|+++
T Consensus       473 lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~  549 (994)
T PRK07868        473 HTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDP  549 (994)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEECh
Confidence            69999999999999999999 9999999999999999999999999999999999985   6789999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCC--CCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI--PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      ....         .+.. .....+++. .......  ........+.+.......  .+....+....++++++|+|| |
T Consensus       550 ~~~~---------~~~~-~~~~iiv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dd~a~IiyT-g  615 (994)
T PRK07868        550 TNLE---------AARQ-LPGRVLVLG-GGESRDLDLPDDADVIDMEKIDPDAVE--LPGWYRPNPGLARDLAFIAFS-T  615 (994)
T ss_pred             HHHH---------HHHh-cCceEEEec-CCccccccCCcchhhhhhhhcCccccc--CCcccCCCCCCCCccEEEEEe-C
Confidence            5431         1111 111122221 1000000  000001111111110000  000011112235899999998 5


Q ss_pred             CCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          158 TTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |||.||++.++|.+...........+++.++|++++.+|++|.+++...+.+++.|++.+++.+..++..+++.|+++++
T Consensus       616 StgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~v  695 (994)
T PRK07868        616 AGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGV  695 (994)
T ss_pred             CCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCC
Confidence            78888888788866554444444456788999999999999999997744444455555555556789999999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      |+++++|++++.|++.......+++++|.++.+  .+++++.+.+.+.++..++++.||+||++.... ..  .....++
T Consensus       696 T~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~g~--gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~--~~~~~~s  770 (994)
T PRK07868        696 TVVSYTWAMLREVVDDPAFVLHGNHPVRLFIGS--GMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NV--SGAKIGS  770 (994)
T ss_pred             cEEEeHHHHHHHHHhCcCCccCCCCceEEEecC--CCCHHHHHHHHHHhCchheeeeeeccccccccc-cc--CCCCCcc
Confidence            999999999999988654444567789987643  389999999998887688999999999875432 11  2245679


Q ss_pred             CCcccccc-cEEEE-----------CCCC--CCCCCCCCeeeeeee-cccccCCccccccccc--cceeeeCCCCCCCce
Q 010114          318 FSTATMTA-GLVIL-----------DECG--VPYPDDQPCVGEVGL-FPLYLGASDRLLNADH--EEVYFRGMPMYKGMC  380 (518)
Q Consensus       318 ~g~~~~~~-~~~i~-----------~~~g--~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  380 (518)
                      +|+|++++ +++|.           |++|  +.++.|+  .|||++ ++.+.       ++..  ...++     .++++
T Consensus       771 vG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge--~Gel~~~~~~~~-------~p~~t~~~~~~-----~~~dg  836 (994)
T PRK07868        771 KGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNE--VGVLLARARGPI-------DPTASVKRGVF-----APADT  836 (994)
T ss_pred             cCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCC--ceEEEEecCCCC-------ChhhhhHhccc-----ccCCE
Confidence            99999997 56553           4566  5677888  699998 44332       1111  11122     23679


Q ss_pred             eccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCC
Q 010114          381 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ  460 (518)
Q Consensus       381 ~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~  460 (518)
                      ||+|||+|++|+||+|+|+||.||+||++|.+|+|.|||++|. +||+|.+++|++.+++. + +.++++|+++++...+
T Consensus       837 w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~-~hp~V~~aaVvg~~d~~-~-~~~~a~Vv~~~~~~~~  913 (994)
T PRK07868        837 WISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALG-RIGGVDLAVTYGVEVGG-R-QLAVAAVTLRPGAAIT  913 (994)
T ss_pred             EEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHh-cCCCeeEEEEEeecCCC-C-ceEEEEEEeCCCCcCC
Confidence            9999999999999999999999999999999999999999997 99999999999998765 5 7889999988776666


Q ss_pred             hhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          461 PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       461 ~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      .++|.++    +.+ +++|++|..|+++++||+|++||++|.+|++....
T Consensus       914 ~~~L~~~----l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~lp  958 (994)
T PRK07868        914 AADLTEA----LAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGIP  958 (994)
T ss_pred             HHHHHHH----HHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCCC
Confidence            6666666    433 89999999999999999999999999999876543

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=7.3e-60  Score=471.46  Aligned_cols=475  Identities=22%  Similarity=0.209  Sum_probs=357.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+|+.+++.++|++|++. ++.||+|+|++.|+++|+++.+||+.+|++.||+.+..+++++.++|++++++++|++.
T Consensus        46 ~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~  125 (613)
T COG1022          46 ITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVEN  125 (613)
T ss_pred             eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecc
Confidence            59999999999999999999 97799999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccc--cCCCC--CCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEec
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIG--NDVGI--PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS  155 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  155 (518)
                      ...     ...+......++..........  .....  ............... ...............+||+|.++||
T Consensus       126 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dDlatiiYT  199 (613)
T COG1022         126 QEL-----LDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF-LIDSAGLEGRIAPPKPDDLATIIYT  199 (613)
T ss_pred             hHH-----HHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh-hhcccccccccCCCCccceEEEEEc
Confidence            421     1222222222221110000000  00000  000000001110000 0000111111245678999999999


Q ss_pred             cCCCCCCceEEeccchhHHHhhhcccccc-CCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHH
Q 010114          156 SGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQ  233 (518)
Q Consensus       156 SGtTG~pK~v~~s~~~~~~~~~~~~~~~~-~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~  233 (518)
                      |||||.||||++||+|+++++........ .+++|++++++|+.|++.... ....++.|+++..   ..++..++..++
T Consensus       200 SGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~---~~~~~~~~~dl~  276 (613)
T COG1022         200 SGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLF---KEDPRTLLEDLK  276 (613)
T ss_pred             CCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEe---cCCHHHHHHHHH
Confidence            99999999999999999999999998886 899999999999999999976 5555555555544   345689999999


Q ss_pred             HcCccEEEechHHHHHHHhccc----C---------------------------------------------CCCCccch
Q 010114          234 DAGVTVLGTVPSLVKAWRNTNC----L---------------------------------------------EGLDWTKI  264 (518)
Q Consensus       234 ~~~~t~l~~~P~~~~~l~~~~~----~---------------------------------------------~~~~l~~l  264 (518)
                      +++||.++++|.+|+.+.+...    .                                             .... .++
T Consensus       277 ~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri  355 (613)
T COG1022         277 EVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG-GRI  355 (613)
T ss_pred             HhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhC-CcE
Confidence            9999999999999998743300    0                                             0111 378


Q ss_pred             hhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCee
Q 010114          265 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV  344 (518)
Q Consensus       265 r~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~  344 (518)
                      |++++||.++++++..+++..  +++++++||+||+++..+.+++. ....+++|.|+|+++++|.|+            
T Consensus       356 ~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~~-~~~~gtvG~p~p~~evKI~d~------------  420 (613)
T COG1022         356 RYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPPD-RFVLGTVGKPLPGIEVKIADD------------  420 (613)
T ss_pred             EEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEcccc-CcccCCcCCcCCCceEEEccC------------
Confidence            889999999999999999866  59999999999999887766654 456789999999999999994            


Q ss_pred             eeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeee-CceecchhHHHHHH
Q 010114          345 GEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVC  422 (518)
Q Consensus       345 Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~~iE~~l  422 (518)
                      |||+| |+.++.+|  |.+++.|...+      +.+|||+|||+|.+|++|+|.++||.+|+|+. +|++|.|+.||..+
T Consensus       421 GEilVRG~~Vm~GY--yk~pe~Taeaf------~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l  492 (613)
T COG1022         421 GEILVRGPNVMKGY--YKNPEATAEAF------TEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKL  492 (613)
T ss_pred             ceEEEecchhcchh--cCChHHHhhhc------cccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHH
Confidence            99999 88888874  55666666666      56899999999999999999999999999995 99999999999999


Q ss_pred             hhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC------------Ch------hHHHHHHHHHH---HhccCCccc
Q 010114          423 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS------------QP------DKLKMIFSKAI---QSKLNPLFK  481 (518)
Q Consensus       423 ~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~------------~~------~~l~~~~~~~~---~~~l~~~~~  481 (518)
                      . .+|.|.+++|++ +++    ..+.|.|++..+.-.            +.      ..+.+.+...+   ...+..+..
T Consensus       493 ~-~~~~I~qi~vvg-~~k----~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~  566 (613)
T COG1022         493 A-KSPLIEQICVVG-DDK----KFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQ  566 (613)
T ss_pred             h-cCCCeeEEEEEe-cCC----cceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhh
Confidence            7 999999999999 432    567788887653211            11      12233332222   234455566


Q ss_pred             cceEEEec-CCC-----CCCCchhHHHHHHHHHhccccc
Q 010114          482 VSLVKVVP-EFP-----RTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       482 p~~i~~v~-~~P-----~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      +..+.+.+ ++.     .|++-|+.|..+.+.++++++.
T Consensus       567 i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~  605 (613)
T COG1022         567 IKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEA  605 (613)
T ss_pred             hheeeecccccccccCccccchhhhHHHHHHhhhhHHHH
Confidence            66666664 333     6999999999999999887764

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.5e-59  Score=573.97  Aligned_cols=469  Identities=18%  Similarity=0.197  Sum_probs=387.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||+++++++|+.|.+. +++|++|++++++++++++++|||+++|++++||+|.++.+++.++++.++++++|+++
T Consensus      3746 ~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~ 3825 (4334)
T PRK05691       3746 WSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSA 3825 (4334)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecC
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCC---CceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEecc
Q 010114           80 FILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS  156 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  156 (518)
                      ....      ....+.....   ....++                 +.+.....    ...........+++++|++|||
T Consensus      3826 ~~~~------~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~----~~~~~~~~~~~~~~~ayvi~TS 3878 (4334)
T PRK05691       3826 ACRE------QARALLDELGCANRPRLLV-----------------WEEVQAGE----VASHNPGIYSGPDNLAYVIYTS 3878 (4334)
T ss_pred             cccc------hhhhhhcccccccccceee-----------------eccccccc----ccccCCCCCCCCCceEEEEECC
Confidence            5421      1111111110   000000                 00110000    0111122334578999999999


Q ss_pred             CCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHH
Q 010114          157 GTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQD  234 (518)
Q Consensus       157 GtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~  234 (518)
                      ||||.||||+++|+++++.+.+....++++++|+++...+++++.+...++.++..|+++++.+..  .++..+++.+++
T Consensus      3879 GSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~ 3958 (4334)
T PRK05691       3879 GSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQA 3958 (4334)
T ss_pred             CCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHH
Confidence            999999999999999999998888889999999999999999999999999999999999998754  357889999999


Q ss_pred             cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC---
Q 010114          235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ---  311 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~---  311 (518)
                      +++|++.++|+++..++...   ...+++||.+++|||+++++..+.|.+.+++++++|.||.||++..+.......   
T Consensus      3959 ~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~ 4035 (4334)
T PRK05691       3959 QGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAST 4035 (4334)
T ss_pred             cCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccc
Confidence            99999999999999887542   235779999999999999999999888888889999999999987654333222   


Q ss_pred             CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCC-CCCceeccccceEE
Q 010114          312 PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM-YKGMCLRRHGDIIK  389 (518)
Q Consensus       312 ~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~TGD~~~  389 (518)
                      .....++|+|+++++++|+|+.++++|.|.  +|||+| |+++..+|  +.++..+...|..++. .++++||+|||+|+
T Consensus      4036 ~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~--~GEL~i~G~~v~~GY--~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~ 4111 (4334)
T PRK05691       4036 RGSYLPIGSPTDNNRLYLLDEALELVPLGA--VGELCVAGTGVGRGY--VGDPLRTALAFVPHPFGAPGERLYRTGDLAR 4111 (4334)
T ss_pred             cCCcCCCCCccCCCEEEEECCCCCCCCCCC--ceEEEEecccccccc--cCCcccchhhcccCCCCCCCceeeccCccee
Confidence            223457999999999999999999999999  699999 77777654  4456666666665554 35789999999999


Q ss_pred             EecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHH
Q 010114          390 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS  469 (518)
Q Consensus       390 ~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~  469 (518)
                      +++||.+.++||.|++||++|++|.+.|||.+|. ++|+|.+++|+... ...+ +.+++|++..+... ...++.+.++
T Consensus      4112 ~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~-~~~~v~~a~v~~~~-~~~~-~~l~a~~~~~~~~~-~~~~~~~~l~ 4187 (4334)
T PRK05691       4112 RRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLH-EQAEVREAAVAVQE-GVNG-KHLVGYLVPHQTVL-AQGALLERIK 4187 (4334)
T ss_pred             ecCCCcEEEecccCCcEEeceEEecHHHHHHHHH-hCCCccEEEEEEec-CCCC-cEEEEEEeCCcccc-cchHHHHHHH
Confidence            9999999999999999999999999999999997 99999998876554 3445 78999998765432 3345666788


Q ss_pred             HHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHH
Q 010114          470 KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       470 ~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~  507 (518)
                      +.++++||.||+|..++++++||+|++||+||++|++.
T Consensus      4188 ~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4188 QRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             HHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence            88999999999999999999999999999999999875

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=2e-58  Score=480.74  Aligned_cols=492  Identities=21%  Similarity=0.245  Sum_probs=370.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++.+|+++
T Consensus        46 ~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  125 (567)
T PLN02479         46 YTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQ  125 (567)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEch
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhcc---------CCCceeeccccccC---CCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCC
Q 010114           80 FILRGGRKFPLYSKVLGA---------APLKAIVLPAIGND---VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVD  147 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (518)
                      ...      +...+....         .....+.+......   .......+...+.+++.....  .. .. ......+
T Consensus       126 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~  195 (567)
T PLN02479        126 EFF------TLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDP--EF-AW-KPPADEW  195 (567)
T ss_pred             hhh------hHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHHHhcccc--cc-cc-CCCCCcc
Confidence            543      111211110         00111111110000   000011234456665543221  00 00 1112235


Q ss_pred             CEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHH-HhhhcCcEEEEecCCCChh
Q 010114          148 AVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILF-SSFLNGATLALYQGSPLER  226 (518)
Q Consensus       148 ~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~-~~l~~G~~~~~~~~~~~~~  226 (518)
                      ++++++|||||||.||+|.++|.++..........+++..++++++.+|++|.+++...+ .++..|.++++ . ..++.
T Consensus       196 ~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~-~-~~~~~  273 (567)
T PLN02479        196 QSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICL-R-QVTAK  273 (567)
T ss_pred             cceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEec-c-CCCHH
Confidence            678899999999999999999999876655544556788899999999999999976643 44555555444 3 56789


Q ss_pred             HHHHHHHHcCccEEEechHHHHHHHhcccCCC-CCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEe
Q 010114          227 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG-LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI  305 (518)
Q Consensus       227 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~  305 (518)
                      .+++.++++++|++.++|.++..+.+...... .++++++.++++|+++++++.+.+.+.  +.++++.||+||+++.+.
T Consensus       274 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~  351 (567)
T PLN02479        274 AIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPST  351 (567)
T ss_pred             HHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc--CCceeccccccccccccc
Confidence            99999999999999999999999987654333 257899999999999999998888754  578999999999864332


Q ss_pred             ecCCC----------CCcccCCCCccccccc-EEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeC
Q 010114          306 QGSLL----------QPQAFGAFSTATMTAG-LVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG  372 (518)
Q Consensus       306 ~~~~~----------~~~~~~~~g~~~~~~~-~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~  372 (518)
                      .+...          ........|.+.++.. ++|+| +++.+++.+...+|||++ ++..+.+|  +.+.+.+...+  
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY--~~~~~~t~~~~--  427 (567)
T PLN02479        352 VCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGY--LKNPKANEEAF--  427 (567)
T ss_pred             ceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhh--hcCcccccchh--
Confidence            22100          0011235677888875 78888 678888765222699999 66655443  33333333333  


Q ss_pred             CCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEE
Q 010114          373 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV  452 (518)
Q Consensus       373 ~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~  452 (518)
                           .++||+|||++++|++|+++++||.+|+|+++|.+|+|.+||.+|. .||.|.+++|++.+++..+ +.++++++
T Consensus       428 -----~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~  500 (567)
T PLN02479        428 -----ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVY-THPAVLEASVVARPDERWG-ESPCAFVT  500 (567)
T ss_pred             -----cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHH-hCcccceeeEEeccchhcC-ceeEEEEE
Confidence                 1369999999999999999999999999999999999999999997 8999999999999887777 88999999


Q ss_pred             ecCCCCCC-hhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc-cccccCCC
Q 010114          453 LKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH-ELSVRSRI  518 (518)
Q Consensus       453 ~~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~-~~~~~~~~  518 (518)
                      +.++...+ .+.+.+.+.+++.++|++|+.|..+.+ +++|+|++||++|..|++.+.+ +...++||
T Consensus       501 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~~~~~~~~~~  567 (567)
T PLN02479        501 LKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKEMGPVKKSRL  567 (567)
T ss_pred             ecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHhhCCcccccC
Confidence            88754322 234556777788899999999988876 6799999999999999998887 66666775

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-58  Score=478.42  Aligned_cols=485  Identities=21%  Similarity=0.247  Sum_probs=373.8

Q ss_pred             CCHHHHHHHHHHHHHHHhh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~-~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|.+|.+ . +++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++.++++
T Consensus        49 lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~  128 (560)
T PRK08974         49 MTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIV  128 (560)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEe
Confidence            6999999999999999985 6 9999999999999999999999999999999999999999999999999999999997


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccCCCC-----------------C--CcccccchhhhhccCCCCCCCCCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI-----------------P--LREQDLSWKDFLSSVDYHPRPNYY  139 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~--~~~~~~~~~~~~~~~~~~~~~~~~  139 (518)
                      +...      ....++........+...........                 +  ......++.+.......    ...
T Consensus       129 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  198 (560)
T PRK08974        129 SNFA------HTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRR----MQY  198 (560)
T ss_pred             cccc------HHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccCCCcccHHHHhhccCC----CCC
Confidence            6422      22222221111111111100000000                 0  00011122222221111    001


Q ss_pred             CCCCCCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhccccc---cCCCCcEEEeecCchhhhhhHH-HHHhhhcCcE
Q 010114          140 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGAT  215 (518)
Q Consensus       140 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~  215 (518)
                      .......+++++++|||||||.||+|.++|.++..+.......+   ....++.++..+|++|.+++.. ++.++..|++
T Consensus       199 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~  278 (560)
T PRK08974        199 VKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQ  278 (560)
T ss_pred             CCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCe
Confidence            11123568999999999999999999999999987654332222   2344667888999999999755 7778889999


Q ss_pred             EEEecCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccc
Q 010114          216 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC  295 (518)
Q Consensus       216 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~y  295 (518)
                      +++.....++..+++.++++++|.+.++|++++.+.+.......+++++|.+++||+++++.+.+++.+.+ +.++++.|
T Consensus       279 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~Y  357 (560)
T PRK08974        279 NLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVKLT-GQYLLEGY  357 (560)
T ss_pred             EEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHHHHHHHHHHh-CCcEEeee
Confidence            88776556678899999999999999999999999887655566788999999999999999988888765 68899999


Q ss_pred             cccccceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCC
Q 010114          296 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMP  374 (518)
Q Consensus       296 g~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~  374 (518)
                      |+||++..+..+........+++|.|++++.++|+|+++.+++.|+  .|||++ ++....+|  +.++..+...+    
T Consensus       358 G~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~--~Gel~v~g~~~~~gy--~~~~~~~~~~~----  429 (560)
T PRK08974        358 GLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGE--PGELWVKGPQVMLGY--WQRPEATDEVI----  429 (560)
T ss_pred             cccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCC--ceEEEEecCCcchhh--cCChhhhhhhh----
Confidence            9999987766555444445678999999999999999999999998  699999 66555442  22222222222    


Q ss_pred             CCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEec
Q 010114          375 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK  454 (518)
Q Consensus       375 ~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~  454 (518)
                         .++||+|||+++++++|++++.||.+|+++++|.+++|.+||++|. .+|+|.+++|++.+++..| +.+.++++..
T Consensus       430 ---~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~  504 (560)
T PRK08974        430 ---KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVM-LHPKVLEVAAVGVPSEVSG-EAVKIFVVKK  504 (560)
T ss_pred             ---hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeeecCCcc-eEEEEEEECC
Confidence               2469999999999999999999999999999999999999999997 9999999999999988877 7777777654


Q ss_pred             CCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          455 KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       455 ~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      + ...+.++    +++++.+++++++.|..+.+++++|+|++||++|+.|++.+..+...
T Consensus       505 ~-~~~~~~~----l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~~~  559 (560)
T PRK08974        505 D-PSLTEEE----LITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAKVDN  559 (560)
T ss_pred             C-CCCCHHH----HHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhhhcc
Confidence            3 2233334    44456678899999999999999999999999999999998877654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.5e-58  Score=518.95  Aligned_cols=478  Identities=18%  Similarity=0.190  Sum_probs=371.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF   80 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~   80 (518)
                      +||+||.++++++|+.|++.+++||+|+++++|+++++++++||+++|++++|+++..+.+++.+++++++++.+|+++.
T Consensus       659 ~Ty~el~~~~~~lA~~L~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~  738 (1140)
T PRK06814        659 LTYRKLLTGAFVLGRKLKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRA  738 (1140)
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHH
Confidence            69999999999999999644999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCCC
Q 010114           81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG  160 (518)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  160 (518)
                      ..+........... . .....+.+.......     .....+.+......    +....+ ...++++++++|||||||
T Consensus       739 ~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~-~~~~~d~a~i~~TSGTTG  806 (1140)
T PRK06814        739 FIEKARLGPLIEAL-E-FGIRIIYLEDVRAQI-----GLADKIKGLLAGRF----PLVYFC-NRDPDDPAVILFTSGSEG  806 (1140)
T ss_pred             HHhhhcchhHHHHh-c-cCceEEEehHhhccC-----ChHHHHHHHhhccC----CccccC-CCCCCCcEEEEECCCccC
Confidence            54221111111111 0 011111111100000     00001111111111    000011 235689999999999999


Q ss_pred             CCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          161 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       161 ~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      .||+|.++|+++..+.......+++.++|++++.+|++|.+++.. ++.++..|+++++.+.......+.+.++++++|.
T Consensus       807 ~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  886 (1140)
T PRK06814        807 TPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATI  886 (1140)
T ss_pred             CCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEE
Confidence            999999999999988887777788999999999999999999854 8889999999999876556677889999999999


Q ss_pred             EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCC
Q 010114          240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS  319 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g  319 (518)
                      +.++|++++.+.+..  .+.+++++|.+++|||++++++.+.+.+.+ +.++++.||+||++........ .....+++|
T Consensus       887 ~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG  962 (1140)
T PRK06814        887 LFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVIALNTP-MHNKAGTVG  962 (1140)
T ss_pred             EEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccccceEEecCC-CCCCCCcCC
Confidence            999999999987763  346788999999999999999999888776 6789999999999876554433 234567999


Q ss_pred             cccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEE
Q 010114          320 TATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV  398 (518)
Q Consensus       320 ~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~  398 (518)
                      +|.+++++++.+..+    .++  .||+++ ++..+.+|.   +.+... ..    ....++||+|||++++|+||++++
T Consensus       963 ~p~~g~~~~~~~~~~----~~~--~Gel~v~g~~~~~gY~---~~~~~~-~~----~~~~~g~~~TGDl~~~d~dG~l~~ 1028 (1140)
T PRK06814        963 RLLPGIEYRLEPVPG----IDE--GGRLFVRGPNVMLGYL---RAENPG-VL----EPPADGWYDTGDIVTIDEEGFITI 1028 (1140)
T ss_pred             ccCCCCeEEEeecCC----CCC--ceEEEEeCCCcchhhc---CCCCCC-cc----ccCCCCeEecCCEEEECCCCeEEE
Confidence            999999999987543    244  499999 776665543   221111 11    113567999999999999999999


Q ss_pred             eeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccCC
Q 010114          399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP  478 (518)
Q Consensus       399 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~  478 (518)
                      .||.||+||++|++|+|.+||+++. +|+.+.+++|++.+++..| +.+++++.   +...+.+++.+.+++   +.+++
T Consensus      1029 ~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~~~~~~~g-~~~~~~~~---~~~~~~~~l~~~~~~---~~l~~ 1100 (1140)
T PRK06814       1029 KGRAKRFAKIAGEMISLAAVEELAA-ELWPDALHAAVSIPDARKG-ERIILLTT---ASDATRAAFLAHAKA---AGASE 1100 (1140)
T ss_pred             EecccCeeeeCCEEECHHHHHHHHH-hcCCcccEEEEEcccCCCC-ceEEEEEc---CCCcCHHHHHHHHHH---cCCCc
Confidence            9999999999999999999999997 8999999999999998888 77776654   223445555555432   35999


Q ss_pred             ccccceEEEecCCCCCCCchhHHHHHHHHHhccccccC
Q 010114          479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRS  516 (518)
Q Consensus       479 ~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~~~  516 (518)
                      +++|..+++++++|+|++||++|++|++++.+.....+
T Consensus      1101 ~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~ 1138 (1140)
T PRK06814       1101 LMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAAKPE 1138 (1140)
T ss_pred             ccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999998877654

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5e-58  Score=472.63  Aligned_cols=476  Identities=19%  Similarity=0.161  Sum_probs=371.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++|++|+++++|+++++++++||+++|++++++++.++.+++.++++.++++.+++++
T Consensus        25 ~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~  104 (511)
T PRK13391         25 VTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSA  104 (511)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEch
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCC-ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ...      .....+...... ...+.......     ......+.+.......        ....+.++.++++|||||
T Consensus       105 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------~~~~~~~~~a~il~TSGt  165 (511)
T PRK13391        105 AKL------DVARALLKQCPGVRHRLVLDGDGE-----LEGFVGYAEAVAGLPA--------TPIADESLGTDMLYSSGT  165 (511)
T ss_pred             hhH------HHHHHHHhcCCCceEEEEecCCCC-----CcccccHHHHhcCCCC--------CCCCCcccccEEEECCCC
Confidence            432      111111111111 11111110000     0111223333221110        011123467899999999


Q ss_pred             CCCCceEEec--cchhHHH---hhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHH
Q 010114          159 TGEPKAIPWT--QLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ  233 (518)
Q Consensus       159 TG~pK~v~~s--~~~~~~~---~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~  233 (518)
                      ||.||+|.++  |.+....   .......+++..++++++.+|++|..++...+.++..|+++++.+ ..++..+++.++
T Consensus       166 TG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~  244 (511)
T PRK13391        166 TGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME-HFDAEQYLALIE  244 (511)
T ss_pred             CCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECC-CCCHHHHHHHHH
Confidence            9999999954  5554322   223334556788899999999999999877788899999998876 567899999999


Q ss_pred             HcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC
Q 010114          234 DAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ  311 (518)
Q Consensus       234 ~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~  311 (518)
                      ++++|++.++|+++..+.+...  ....+++++|.+++||+++++++.+++.+.+ +..+++.||+||++.+........
T Consensus       245 ~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~  323 (511)
T PRK13391        245 EYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTACDSEEW  323 (511)
T ss_pred             HhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEEecCccc
Confidence            9999999999999998886543  2345678999999999999999999988765 578999999999987654433333


Q ss_pred             CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEE
Q 010114          312 PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR  390 (518)
Q Consensus       312 ~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~  390 (518)
                      ....+++|.|+++ .++++|++|.+++.|+  .|||++ ++ ..-+  ++.+++.+...+.     ...+||+|||++++
T Consensus       324 ~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~--~Gel~~~g~-~~~g--y~~~~~~~~~~~~-----~~~~w~~TGD~g~~  392 (511)
T PRK13391        324 LAHPGTVGRAMFG-DLHILDDDGAELPPGE--PGTIWFEGG-RPFE--YLNDPAKTAEARH-----PDGTWSTVGDIGYV  392 (511)
T ss_pred             cccCCCcCCcccc-eEEEECCCCCCCCCCC--ceEEEEecC-cceE--EcCChhHhHHhhc-----cCCCEEecCCEEEE
Confidence            3456789999999 6999999999999998  599999 55 3332  2333333222221     12479999999999


Q ss_pred             ecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHH
Q 010114          391 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK  470 (518)
Q Consensus       391 ~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~  470 (518)
                      +++|.+++.||.+|+++++|.+++|.+||+++. +||.|.+++|++.+++..| +.+++++++.++... .+.+.+.+++
T Consensus       393 ~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~-~~~~~~~l~~  469 (511)
T PRK13391        393 DEDGYLYLTDRAAFMIISGGVNIYPQEAENLLI-THPKVADAAVFGVPNEDLG-EEVKAVVQPVDGVDP-GPALAAELIA  469 (511)
T ss_pred             CCCccEEEeccCCCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEecCCcccC-ceeEEEEEECCCCCc-ccchHHHHHH
Confidence            999999999999999999999999999999998 8999999999999988877 788888887764332 2345566777


Q ss_pred             HHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          471 AIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       471 ~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      ++++++++++.|..|.+++++|+|++||++|+.|++.+.+.
T Consensus       470 ~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~~  510 (511)
T PRK13391        470 FCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWGN  510 (511)
T ss_pred             HHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhcc
Confidence            78899999999999999999999999999999999988653

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=4.1e-58  Score=476.42  Aligned_cols=476  Identities=23%  Similarity=0.214  Sum_probs=366.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||.||.++++++|++|.+. +++||+|+++++|+++++++++||+++|++++|+++..+..++.++++.++++.+|+++
T Consensus        47 ~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~  126 (541)
T TIGR03205        47 ITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSD  126 (541)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeC
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999975


Q ss_pred             hhhccCCCCcchhhhhccCCC-ceeeccccccCC------CCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           80 FILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDV------GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      ..    .......+....... ..++........      .........++.+++.....   .  .......+++++++
T Consensus       127 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~i  197 (541)
T TIGR03205       127 LA----ALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAA---P--AEWPAVTPDDVALL  197 (541)
T ss_pred             ch----hhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHhcCCC---C--CCCCCCCccCeEEE
Confidence            21    001111111111111 111111110000      00111223445555432211   1  11112356899999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhhcccc------ccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCCh
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAH------IDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLE  225 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~------~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~  225 (518)
                      +|||||||.||+|.++|.++....... ..      ......+++++..|++|.+++.. ++.+++.|+++++.. ..++
T Consensus       198 ~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~  275 (541)
T TIGR03205       198 QYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQ-RFDV  275 (541)
T ss_pred             EECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecC-CCCH
Confidence            999999999999999999987654321 11      12234578999999999998866 788899999987765 5678


Q ss_pred             hHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEe
Q 010114          226 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI  305 (518)
Q Consensus       226 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~  305 (518)
                      ..+++.|+++++|++.++|+++..+++.......+++++|.+++||+++++++.+++.+.+ +.++++.||+||++....
T Consensus       276 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~  354 (541)
T TIGR03205       276 AAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGT  354 (541)
T ss_pred             HHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccc
Confidence            9999999999999999999999999876544556778999999999999999998887665 678999999999987665


Q ss_pred             ecCCCCCcccCCCCcccccccEEEE--CCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceec
Q 010114          306 QGSLLQPQAFGAFSTATMTAGLVIL--DECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR  382 (518)
Q Consensus       306 ~~~~~~~~~~~~~g~~~~~~~~~i~--~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (518)
                      .+........+++|.|++++.++|.  |+++++++.|+  .|||++ ++....+|.  .+...+...+.       .+||
T Consensus       355 ~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~--~Gel~v~~~~~~~gy~--~~~~~~~~~~~-------~~~~  423 (541)
T TIGR03205       355 GHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGE--VGELRIRGPNVTRGYW--NRPEESAEAFV-------GDRF  423 (541)
T ss_pred             cCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCC--eeEEEEecCCcccccc--CChhhhHhhhc-------cCCc
Confidence            5544344456789999999998875  57788999888  699999 665555432  12222222221       2489


Q ss_pred             cccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCC-CCh
Q 010114          383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQP  461 (518)
Q Consensus       383 ~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~-~~~  461 (518)
                      +|||+++++++|++++.||.+|+++++|.+|+|.+||+++. ++++|.+++|++.+++..+ +.+.+++++.++.. .+.
T Consensus       424 ~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~  501 (541)
T TIGR03205       424 LTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIY-EHPGVQEVIVIGIPDQYRG-EAAKAFVKLRPGAKPFSL  501 (541)
T ss_pred             ccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHH-hCCCeeeEEEEecCCcccC-ceEEEEEEECCCCCcCCH
Confidence            99999999999999999999999999999999999999998 8999999999999988777 88899998876532 344


Q ss_pred             hHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHH
Q 010114          462 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR  505 (518)
Q Consensus       462 ~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~  505 (518)
                      +++    .++++++|+++++|..|+++++||+|++||++|++|+
T Consensus       502 ~~l----~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       502 DEL----RAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             HHH----HHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence            444    4446778999999999999999999999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.8e-59  Score=494.15  Aligned_cols=485  Identities=16%  Similarity=0.161  Sum_probs=353.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+|+++|++||+++++||+++|++++|+++.++++++.+++++++++++|++.
T Consensus       122 lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~  201 (700)
T PTZ00216        122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG  201 (700)
T ss_pred             eEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECH
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhcc--CCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114           80 FILRGGRKFPLYSKVLGA--APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      ...      ..+......  .....++.................+|.+++..+...... ........++++++++||||
T Consensus       202 ~~~------~~l~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~iiyTSG  274 (700)
T PTZ00216        202 KNV------PNLLRLMKSGGMPNTTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSH-HPLNIPENNDDLALIMYTSG  274 (700)
T ss_pred             HHH------HHHHHhhhhccCCceEEEEECCCccccccCCceEEEHHHHHHhCCccccc-cccCCCCCcccEEEEEEeCC
Confidence            432      111111111  111112211110000001112345677776554211011 11122345789999999999


Q ss_pred             CCCCCceEEeccchhHHHhhhccccc-----cCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHH--
Q 010114          158 TTGEPKAIPWTQLSSIRCTAEGWAHI-----DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK--  230 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~--  230 (518)
                      |||.||||+++|+++++++......+     .+.++|++++++|++|.+++......+..|+++.+.+    +..+.+  
T Consensus       275 TTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~----~~~l~~~~  350 (700)
T PTZ00216        275 TTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGS----PRTLTDTF  350 (700)
T ss_pred             CCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECC----HHHhhhhh
Confidence            99999999999999998776544332     2467899999999999999876556677788776532    334433  


Q ss_pred             -----HHHHcCccEEEechHHHHHHHhcccC-------------------------CCCC----------------ccch
Q 010114          231 -----FVQDAGVTVLGTVPSLVKAWRNTNCL-------------------------EGLD----------------WTKI  264 (518)
Q Consensus       231 -----~i~~~~~t~l~~~P~~~~~l~~~~~~-------------------------~~~~----------------l~~l  264 (518)
                           .+++++||++.++|.+++.+.+....                         .+.+                .+++
T Consensus       351 ~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l  430 (700)
T PTZ00216        351 ARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRV  430 (700)
T ss_pred             ccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcE
Confidence                 68999999999999999887643110                         0000                1579


Q ss_pred             hhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEECCCCC--CCCCCCC
Q 010114          265 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV--PYPDDQP  342 (518)
Q Consensus       265 r~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~--~~~~~~~  342 (518)
                      |.+++||+++++++.+++...+ + +++++||+||+++....... .....+++|.|+++++++|+|+++.  ..+.+. 
T Consensus       431 r~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TEt~~~~~~~~~-~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~-  506 (700)
T PTZ00216        431 RAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTETVCCGGIQRT-GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEP-  506 (700)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh-h-hHhhccCcccccccccccCC-CCCCCCCcCCcCCCeEEEEeechhhccCCCCCC-
Confidence            9999999999999988877655 4 89999999999765443332 3345689999999999999997642  233344 


Q ss_pred             eeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeee-eCceecchhHHHH
Q 010114          343 CVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-LGGIKTSSVEIER  420 (518)
Q Consensus       343 ~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~-~~G~~v~~~~iE~  420 (518)
                       .|||++ ++.++.+|  +.+++.+...+      ..+|||+|||+|++|+||+|+++||.||+|| .+|++|+|.+||+
T Consensus       507 -~GEL~vrG~~v~~GY--~~~pe~T~~~f------~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~  577 (700)
T PTZ00216        507 -RGEILLRGPFLFKGY--YKQEELTREVL------DEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEA  577 (700)
T ss_pred             -CceEEEcCCcccchh--cCChhHhhhhc------cccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHH
Confidence             599999 77777664  33444444333      2356999999999999999999999999999 8999999999999


Q ss_pred             HHhhcCcccce--eeEEEeCCCCCCccEEEEEEEecCCC----------C------CChhHHHHHHHHHH-----HhccC
Q 010114          421 VCDQADESILE--TAAISVSPAGGGPEVLVIFVVLKKGF----------T------SQPDKLKMIFSKAI-----QSKLN  477 (518)
Q Consensus       421 ~l~~~~~~v~~--~~vv~~~~~~~g~~~~~~~v~~~~~~----------~------~~~~~l~~~~~~~~-----~~~l~  477 (518)
                      ++. +||.|.+  ++|++.++.    ..++++|++..+.          .      .+..++.+.+.+.+     ++.+.
T Consensus       578 ~l~-~~p~V~~~~~~v~~~~~~----~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  652 (700)
T PTZ00216        578 LYG-QNELVVPNGVCVLVHPAR----SYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRK  652 (700)
T ss_pred             HHh-cCcCcccceEEEEEecCC----ceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Confidence            997 9999997  344444321    5678888875311          0      01123344443333     34788


Q ss_pred             CccccceEEEecC------CCCCCCchhHHHHHHHHHhccccc
Q 010114          478 PLFKVSLVKVVPE------FPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       478 ~~~~p~~i~~v~~------~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      .|.+|+.|.++++      =-.|+++|+.|+.+++.|+++|+.
T Consensus       653 ~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~  695 (700)
T PTZ00216        653 SFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKE  695 (700)
T ss_pred             CceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHH
Confidence            8999999998853      236999999999999999998874

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-58  Score=455.35  Aligned_cols=484  Identities=18%  Similarity=0.170  Sum_probs=372.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+|..+++..++..|++. +++++.|+|+.-|++||+++.+||...|++.|||...++++.++++++.+...++|++.
T Consensus       109 ~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~  188 (691)
T KOG1256|consen  109 LTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDN  188 (691)
T ss_pred             EEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeC
Confidence            59999999999999999988 99999999999999999999999999999999999999999999999999999999995


Q ss_pred             hhhccCCCCcchhhhhccC-----CCce-ee-ccccccCC---CCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCE
Q 010114           80 FILRGGRKFPLYSKVLGAA-----PLKA-IV-LPAIGNDV---GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV  149 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-----~~~~-~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (518)
                      +        ..+.++++..     +... ++ +.......   .........+|.++...+...  ..... .+..++++
T Consensus       189 ~--------~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~--~~~~~-~~p~p~d~  257 (691)
T KOG1256|consen  189 A--------KKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKN--QRKPR-VPPKPDDL  257 (691)
T ss_pred             H--------HHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccc--cCCCC-CCCCccce
Confidence            4        2233333322     1122 22 21111111   112234578999999988741  22222 46678999


Q ss_pred             EEEEeccCCCCCCceEEeccchhHHHhhh---cccc---ccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCC
Q 010114          150 VNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAH---IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP  223 (518)
Q Consensus       150 ~~i~~TSGtTG~pK~v~~s~~~~~~~~~~---~~~~---~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~  223 (518)
                      |.|.|||||||.||||++||+|+++.++.   ....   .....+|++++++||.|++...+-...++.|+++.+..+  
T Consensus       258 atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~g--  335 (691)
T KOG1256|consen  258 ATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARG--  335 (691)
T ss_pred             EEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecC--
Confidence            99999999999999999999999996543   1111   123346999999999999999886666689999999874  


Q ss_pred             ChhHHHHHHHHcCccEEEechHHHHHHHhcc--------------------------cCCCCCc----------------
Q 010114          224 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--------------------------CLEGLDW----------------  261 (518)
Q Consensus       224 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~--------------------------~~~~~~l----------------  261 (518)
                      ++..+.+.|++.+||.+.++|.+++++.+..                          ...+...                
T Consensus       336 D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~  415 (691)
T KOG1256|consen  336 DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQ  415 (691)
T ss_pred             ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHH
Confidence            4577888899999999999999998874330                          0011111                


Q ss_pred             ---cchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEEC-CCCCCC
Q 010114          262 ---TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPY  337 (518)
Q Consensus       262 ---~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~  337 (518)
                         .++|.+++|++|+++++..+++..+ +++++++||+||+++..+.....+. ..+++|.|+|+++++++| ++-...
T Consensus       416 ~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~  493 (691)
T KOG1256|consen  416 SLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYD  493 (691)
T ss_pred             HhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcC
Confidence               2678899999999999999999775 7999999999999855555555444 789999999999999988 333333


Q ss_pred             CCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeee-Cceecch
Q 010114          338 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSS  415 (518)
Q Consensus       338 ~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~  415 (518)
                      ..+.  .||||+ |+.++.+|  |.+++.+...+      +.+||+||||+|+|+++|.|.+.||.++++|+ .|++|.|
T Consensus       494 a~~~--~GEIcirG~~Vf~GY--yK~p~~T~e~i------deDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaP  563 (691)
T KOG1256|consen  494 ADGS--KGEICVRGPNVFMGY--YKDPEKTAEAI------DEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAP  563 (691)
T ss_pred             cCCC--cceEEEecchhceec--cCChHHHhhhh------ccccccccccceeECCCccEEEEecccceEEcCCCCccCh
Confidence            3343  499999 99999875  55666666555      68899999999999999999999999999995 8999999


Q ss_pred             hHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCCh----------------hHHHHHHHHHH-----Hh
Q 010114          416 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP----------------DKLKMIFSKAI-----QS  474 (518)
Q Consensus       416 ~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~----------------~~l~~~~~~~~-----~~  474 (518)
                      +.||++.. +.+.|...+|.+...+    ..+++.|++.++...+.                .++++.+...+     ..
T Consensus       564 e~IEniy~-~~~~V~qi~V~g~s~~----~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~  638 (691)
T KOG1256|consen  564 EKIENIYK-RSLPVQQIFVLGDSLR----SFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKEN  638 (691)
T ss_pred             HHHHHHHh-cCCceEEEEEECCcch----hcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhh
Confidence            99999998 7888888888875433    67888998876422110                11222221112     24


Q ss_pred             ccCCccccceEEEec---CCC---CCCCchhHHHHHHHHHhccccc
Q 010114          475 KLNPLFKVSLVKVVP---EFP---RTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~---~~P---~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      .+..+.....|.+.+   ++.   .|+|-|+.|..+.+.|+++|+.
T Consensus       639 ~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~  684 (691)
T KOG1256|consen  639 GLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDE  684 (691)
T ss_pred             hccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHH
Confidence            667777777777764   233   5999999999999999999874

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.6e-58  Score=564.87  Aligned_cols=463  Identities=21%  Similarity=0.213  Sum_probs=381.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++|++|++++++++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus      1157 lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~ 1236 (4334)
T PRK05691       1157 LDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQS 1236 (4334)
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ......      ..   ......+.+                  .+.... .   .+...+.....++++++++||||||
T Consensus      1237 ~~~~~~------~~---~~~~~~~~~------------------~~~~~~-~---~~~~~~~~~~~~~~~a~ii~TSGST 1285 (4334)
T PRK05691       1237 HLLERL------PQ---AEGVSAIAL------------------DSLHLD-S---WPSQAPGLHLHGDNLAYVIYTSGST 1285 (4334)
T ss_pred             hhhhhc------cc---ccCceEEee------------------cccccc-c---cCCCCCCCCCCCCCeEEEEEcCCCC
Confidence            532110      00   000000000                  000000 0   0001111223568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC--CCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~~i~~~~~  237 (518)
                      |.||||+++|+++...+.+....+++.++|++++..|++|+.++..++.++..|+++++.++  ..++..+++.++++++
T Consensus      1286 G~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~v 1365 (4334)
T PRK05691       1286 GQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGV 1365 (4334)
T ss_pred             CCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCC
Confidence            99999999999999988887778899999999999999999999889999999999999865  3467899999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCC-CCCcccC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFG  316 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~-~~~~~~~  316 (518)
                      |++.++|++++.+.+...  ...+++||.+++|||++++++.+++.+.+++.+++|.||+||+++.+..... .......
T Consensus      1366 t~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 1443 (4334)
T PRK05691       1366 TTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERS 1443 (4334)
T ss_pred             eEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCC
Confidence            999999999999986532  3467899999999999999999999888888899999999999865543221 2233457


Q ss_pred             CCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCC-CCceeccccceEEEecCc
Q 010114          317 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGG  394 (518)
Q Consensus       317 ~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~TGD~~~~~~~g  394 (518)
                      ++|+|++++.++|+|+++++++.|+  +|||+| |+++..+|  +.+++.+...|...+.. .+.+||+|||+|++++||
T Consensus      1444 ~iG~p~~~~~~~i~d~~~~~vp~G~--~GEL~i~G~~v~~GY--l~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG 1519 (4334)
T PRK05691       1444 PIGRPLGNVLCRVLDAELNLLPPGV--AGELCIGGAGLARGY--LGRPALTAERFVPDPLGEDGARLYRTGDRARWNADG 1519 (4334)
T ss_pred             cccceeCCCEEEEECCCCCCCCCCC--ceEEEecCcccchhh--cCCccccHhhCCCCCCCCCCceEEEccceEEECCCC
Confidence            8999999999999999999999999  699999 77766654  34555555566555543 467899999999999999


Q ss_pred             eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114          395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS  474 (518)
Q Consensus       395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~  474 (518)
                      .++++||.||+||++|++|+|.|||.+|. +||+|.+++|+...+. .+ ..++++++..++...+.++    +++.+.+
T Consensus      1520 ~l~~~GR~d~qiki~G~rie~~eIE~~l~-~~~~V~~a~v~~~~~~-~~-~~lva~~~~~~~~~~~~~~----l~~~l~~ 1592 (4334)
T PRK05691       1520 ALEYLGRLDQQVKLRGFRVEPEEIQARLL-AQPGVAQAAVLVREGA-AG-AQLVGYYTGEAGQEAEAER----LKAALAA 1592 (4334)
T ss_pred             CEEEecccCcEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEeeCC-CC-CEEEEEEEeCCCCCCCHHH----HHHHHHH
Confidence            99999999999999999999999999998 8999999999866543 44 6888998877654444444    4455778


Q ss_pred             ccCCccccceEEEecCCCCCCCchhHHHHHHHH
Q 010114          475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~  507 (518)
                      +|+.|++|..++++++||+|++||++|++|++.
T Consensus      1593 ~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1593 ELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             hCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence            999999999999999999999999999999764

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.1e-57  Score=463.58  Aligned_cols=426  Identities=17%  Similarity=0.166  Sum_probs=349.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++|+++..+++++..++++++++++++++
T Consensus        29 ~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~  108 (458)
T PRK09029         29 LTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLE  108 (458)
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999976


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      +...       ....    .  .                  ....   .  ..     ...+....++++++++||||||
T Consensus       109 ~~~~-------~~~~----~--~------------------~~~~---~--~~-----~~~~~~~~~~~~a~i~~TSGTT  147 (458)
T PRK09029        109 GENT-------FSAL----T--S------------------LHLQ---L--VE-----GAHAVAWQPQRLATMTLTSGST  147 (458)
T ss_pred             cccc-------hhhc----c--c------------------cccc---c--cc-----ccCcccCCCCCeEEEEECCCCC
Confidence            4210       0000    0  0                  0000   0  00     0011223568899999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      |.||+|.++|++++.........++..++|+++..+|++|.+++..++.++..|+++++.+.    ..+++.+.  ++|.
T Consensus       148 G~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~----~~~~~~i~--~~t~  221 (458)
T PRK09029        148 GLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK----QPLEQALA--GCTH  221 (458)
T ss_pred             CCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh----HHHHHHHh--hcee
Confidence            99999999999999988877777888999999999999999998777788999999988764    45666663  7999


Q ss_pred             EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCC
Q 010114          240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS  319 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g  319 (518)
                      +..+|+++..++.....    ..++|.+++||+++++.+.+++...  +.++++.||+||++...+....   ....++|
T Consensus       222 ~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~---~~~~~~G  292 (458)
T PRK09029        222 ASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRA---DGLAGVG  292 (458)
T ss_pred             eecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCC---CCCCCCC
Confidence            99999999998876532    3479999999999999998888753  6889999999999865443322   2235699


Q ss_pred             cccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEE
Q 010114          320 TATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV  398 (518)
Q Consensus       320 ~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~  398 (518)
                      .|++++.+++.+             |||++ ++....+|.  .+...+       ....+++||+|||+|++| ||++++
T Consensus       293 ~~~~~~~~~i~~-------------gel~v~g~~~~~gY~--~~~~~~-------~~~~~~~~~~TGD~~~~~-~g~l~~  349 (458)
T PRK09029        293 SPLPGREVKLVD-------------GEIWLRGASLALGYW--RQGQLV-------PLVNDEGWFATRDRGEWQ-NGELTI  349 (458)
T ss_pred             CCCCCCEEEEeC-------------CEEEEecCceeeeee--cCcccc-------ccccCCCccCCCCcEEEe-CCEEEE
Confidence            999999999976             89999 666555432  122111       122456899999999999 999999


Q ss_pred             eeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccCC
Q 010114          399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP  478 (518)
Q Consensus       399 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~  478 (518)
                      .||.+|+|+++|.+|+|.+||++|. ++|+|.+++|++.+++..| +.++++|++..  ..+.+++.    ++++++|++
T Consensus       350 ~gR~~d~i~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~v~~~~--~~~~~~l~----~~~~~~l~~  421 (458)
T PRK09029        350 LGRLDNLFFSGGEGIQPEEIERVIN-QHPLVQQVFVVPVADAEFG-QRPVAVVESDS--EAAVVNLA----EWLQDKLAR  421 (458)
T ss_pred             ecccccceeeCCEEeCHHHHHHHHh-cCCCcceEEEEccCCcccC-ceEEEEEEcCc--ccCHHHHH----HHHHhhchh
Confidence            9999999999999999999999997 8999999999999998888 88999988763  23444444    446778999


Q ss_pred             ccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       479 ~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      |++|..+++++++|+|.+||++|+.|++++++..+
T Consensus       422 ~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~~  456 (458)
T PRK09029        422 FQQPVAYYLLPPELKNGGIKISRQALKEWVAQQLG  456 (458)
T ss_pred             ccCCeEEEEecccccCcCCCcCHHHHHHHHHhccC
Confidence            99999999999999999999999999999987654

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-57  Score=456.10  Aligned_cols=398  Identities=14%  Similarity=0.128  Sum_probs=337.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF   80 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~   80 (518)
                      +||+||.++++++|+.|...+++|++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.+++++.
T Consensus         9 ~ty~el~~~~~~~a~~l~~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~   88 (414)
T PRK08308          9 YSKSDFDLRLQRYEEMEQFQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYGES   88 (414)
T ss_pred             ecHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEecCc
Confidence            69999999999999998533999999999999999999999999999999999999999999999999999999998752


Q ss_pred             hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCCC
Q 010114           81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG  160 (518)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  160 (518)
                      ..      .               .                      ..           .....++++++++|||||||
T Consensus        89 ~~------~---------------~----------------------~~-----------~~~~~~~~~~~i~~TSGtTG  114 (414)
T PRK08308         89 DF------T---------------K----------------------LE-----------AVNYLAEEPSLLQYSSGTTG  114 (414)
T ss_pred             cc------c---------------c----------------------cc-----------CCCCCCCCceEEEECCCCCC
Confidence            00      0               0                      00           00123478999999999999


Q ss_pred             CCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          161 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       161 ~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      .||+|.++|.++..++......+....+|+++..+|++|.+++.. ++.++..|+++++.+ ..++..+++.++++++|.
T Consensus       115 ~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~  193 (414)
T PRK08308        115 EPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-NKNPKFALNILRNTPQHI  193 (414)
T ss_pred             CCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-CCCHHHHHHHHHHhCCeE
Confidence            999999999999988877777778888999999999999999865 889999999999876 567889999999999999


Q ss_pred             EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCC
Q 010114          240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS  319 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g  319 (518)
                      ++++|+++..+.+....    ..+++.++++|+++++++.+.+.+.  ..++++.||+||++.......   ....+++|
T Consensus       194 ~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G  264 (414)
T PRK08308        194 LYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICPD---MKSHLDLG  264 (414)
T ss_pred             EEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecCC---CCCCCccC
Confidence            99999999999876432    1368889999999999998888766  368999999999986543221   23456899


Q ss_pred             cccccccEEEECCCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEe
Q 010114          320 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQ  399 (518)
Q Consensus       320 ~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~  399 (518)
                      +|++++++++.++.      ++  .||+++..                          +++||+|||++++++||++++.
T Consensus       265 ~p~~~~~~~~~~~~------~~--~gel~v~~--------------------------~~~~~~TGDl~~~~~dg~l~~~  310 (414)
T PRK08308        265 NPLPHVSVSAGSDE------NA--PEEIVVKM--------------------------GDKEIFTKDLGYKSERGTLHFM  310 (414)
T ss_pred             ccCCCeEEEEecCC------CC--CceEEEEc--------------------------CCceEECCceEEECCCccEEEe
Confidence            99999999987642      33  48998721                          2358999999999999999999


Q ss_pred             eccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccCCc
Q 010114          400 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL  479 (518)
Q Consensus       400 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~  479 (518)
                      ||.+|++|++|++|+|.+||+++. .+|+|.+++|++.+++..+ +.+.++++..+  ..+.+++.++    +.++|++|
T Consensus       311 GR~~~~ik~~G~~v~p~eIE~~l~-~~~~v~~a~v~~~~~~~~~-~~~~~~v~~~~--~~~~~~l~~~----l~~~l~~~  382 (414)
T PRK08308        311 GRMDDVINVSGLNVYPIEVEDVML-RLPGVQEAVVYRGKDPVAG-ERVKAKVISHE--EIDPVQLREW----CIQHLAPY  382 (414)
T ss_pred             cccCCeEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCC--CCCHHHHHHH----HHHhCccc
Confidence            999999999999999999999997 8999999999999988877 88888887654  3455555554    66789999


Q ss_pred             cccceEEEecCCCCCCCchhHHHHH
Q 010114          480 FKVSLVKVVPEFPRTASNKLLRRVL  504 (518)
Q Consensus       480 ~~p~~i~~v~~~P~t~~GKv~R~~l  504 (518)
                      ++|..+++++++|+|++||++|+.|
T Consensus       383 ~~P~~i~~v~~iP~t~~GKi~r~~~  407 (414)
T PRK08308        383 QVPHEIESVTEIPKNANGKVSRKLL  407 (414)
T ss_pred             cCCcEEEEeccCCCCCCcCeehhhh
Confidence            9999999999999999999999943

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=9.4e-58  Score=461.80  Aligned_cols=434  Identities=21%  Similarity=0.213  Sum_probs=350.6

Q ss_pred             CHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114            2 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF   80 (518)
Q Consensus         2 Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~   80 (518)
                      ||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            8999999999999999999 999999999999999999999999999999999999999999999999999999999874


Q ss_pred             hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCCC
Q 010114           81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG  160 (518)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  160 (518)
                      ...         ....                       ...+.++......   . .........+++++++|||||||
T Consensus        81 ~~~---------~~~~-----------------------~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~i~~TSGtTG  124 (436)
T TIGR01923        81 LEE---------KDFQ-----------------------ADSLDRIEAAGRY---E-TSLSASFNMDQIATLMFTSGTTG  124 (436)
T ss_pred             ccc---------ccee-----------------------ecchHhhhhcccc---c-ccccccCCcCceEEEEeCCCCCC
Confidence            210         0000                       0001111100000   0 00112234588999999999999


Q ss_pred             CCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEE
Q 010114          161 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL  240 (518)
Q Consensus       161 ~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l  240 (518)
                      .||+|.++|.++...+......+++.++|+++..+|++|..++..++.++..|+++++.+..   ..+++.++++++|++
T Consensus       125 ~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~  201 (436)
T TIGR01923       125 KPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHI  201 (436)
T ss_pred             CCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEE
Confidence            99999999999999888877888999999999999999999987788999999999987643   489999999999999


Q ss_pred             EechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCc
Q 010114          241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST  320 (518)
Q Consensus       241 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~  320 (518)
                      .++|+++..+++....    .+++|.++++|+++++++.+++...  +..+++.||+||++...+...........++|.
T Consensus       202 ~~~P~~l~~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  275 (436)
T TIGR01923       202 SLVPTQLNRLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHARPDVGR  275 (436)
T ss_pred             EeHHHHHHHHHhCcCC----CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccccccCCCc
Confidence            9999999999887532    2689999999999999998887643  788999999999987655444333222235899


Q ss_pred             ccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEe
Q 010114          321 ATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQ  399 (518)
Q Consensus       321 ~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~  399 (518)
                      |++++++++.+++..     +  .||+++ ++....+|..  +...+. .      ...++||+|||++++++||.+++.
T Consensus       276 ~~~~~~~~i~~~~~~-----~--~Gel~v~~~~~~~gy~~--~~~~~~-~------~~~~~~~~TGD~~~~~~dg~~~~~  339 (436)
T TIGR01923       276 PLAGREIKIKVDNKE-----G--HGEIMVKGANLMKGYLY--QGELTP-A------FEQQGWFNTGDIGELDGEGFLYVL  339 (436)
T ss_pred             cCCCcEEEEEeCCCC-----C--ceEEEEECCccchhhCC--Chhhhh-h------hhcCCCeeccceEEEcCCCCEEEe
Confidence            999999998443221     3  599999 6665554322  221111 1      124579999999999999999999


Q ss_pred             eccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccCCc
Q 010114          400 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL  479 (518)
Q Consensus       400 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~  479 (518)
                      ||.+|++|++|.+|++.+||+++. .+|.|.++++++.++...+ ..+.+++++.++  .+.+++.++    +.+.|+++
T Consensus       340 GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~--~~~~~l~~~----l~~~l~~~  411 (436)
T TIGR01923       340 GRRDDLIISGGENIYPEEIETVLY-QHPGIQEAVVVPKPDAEWG-QVPVAYIVSESD--ISQAKLIAY----LTEKLAKY  411 (436)
T ss_pred             ccccCeEEeCCEeeCHHHHHHHHH-hCCCeeEEEEeCCcchhcC-CeeEEEEEECCC--CCHHHHHHH----HHHhhhCC
Confidence            999999999999999999999997 8999999999998877666 788888887753  444555554    56788999


Q ss_pred             cccceEEEecCCCCCCCchhHHHHH
Q 010114          480 FKVSLVKVVPEFPRTASNKLLRRVL  504 (518)
Q Consensus       480 ~~p~~i~~v~~~P~t~~GKv~R~~l  504 (518)
                      ++|..++++++||+|++||++|++|
T Consensus       412 ~~p~~i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       412 KVPIAFEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             CCCeEEEEecCCCCCCCCceecccC
Confidence            9999999999999999999999864

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.9e-57  Score=466.88  Aligned_cols=484  Identities=20%  Similarity=0.213  Sum_probs=361.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++.++..++..+++.++++.+++++
T Consensus        44 ~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~  123 (545)
T PRK08162         44 RTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDT  123 (545)
T ss_pred             EEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ...      ..+.+........ ...+.............+..++.+++.....    ........+.+++++++|||||
T Consensus       124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGT  193 (545)
T PRK08162        124 EFA------EVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDP----DFAWTLPADEWDAIALNYTSGT  193 (545)
T ss_pred             chh------hHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCc----cccccCCCCCCCeEEEEeCCCC
Confidence            532      2222222111111 2222211110000011123345555543221    0111112234688999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      ||.||+|+++|.++..+.......+.+..++++++.+|++|..++...+.....|++.++.. ..++..+++.++++++|
T Consensus       194 TG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~l~~~~~t  272 (545)
T PRK08162        194 TGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLR-KVDPKLIFDLIREHGVT  272 (545)
T ss_pred             CCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeC-CCCHHHHHHHHHHcCCe
Confidence            99999999999987766655555567788899999999999999866444444566665554 56789999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-------
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-------  311 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-------  311 (518)
                      ++.++|+++..|++........+.+.+.++++|+.+++++.+.+.+.  +.++++.||+||+++.+..+....       
T Consensus       273 ~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  350 (545)
T PRK08162        273 HYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQPEWDALPL  350 (545)
T ss_pred             EEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcceeecccccccccCCc
Confidence            99999999999987654433445566777899999999988887653  678999999999865433332111       


Q ss_pred             ---CcccCCCCcccc-cccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceecccc
Q 010114          312 ---PQAFGAFSTATM-TAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG  385 (518)
Q Consensus       312 ---~~~~~~~g~~~~-~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG  385 (518)
                         .....+.|.+.+ +..++|+| +++.+++.+....|||++ ++..+.+|  +.+...+...+       .++||+||
T Consensus       351 ~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY--~~~~~~~~~~~-------~~g~~~TG  421 (545)
T PRK08162        351 DERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGY--LKNPKATEEAF-------AGGWFHTG  421 (545)
T ss_pred             cchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhh--cCChhhhHHHh-------hCCCcccC
Confidence               011244565554 33578888 578888764222699999 66655443  22333322222       23599999


Q ss_pred             ceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHH
Q 010114          386 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK  465 (518)
Q Consensus       386 D~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~  465 (518)
                      |++++|+||+++++||.+|+++++|.+|+|.+||++|. .+|+|.+++|++.+++..+ +.+.++++++++...+.+++.
T Consensus       422 Dl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~  499 (545)
T PRK08162        422 DLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLY-RHPAVLVAAVVAKPDPKWG-EVPCAFVELKDGASATEEEII  499 (545)
T ss_pred             ceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHH-hCCcccEEEEEeeeccccC-ceEEEEEEeCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999997 9999999999999888777 889999998876554554444


Q ss_pred             HHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          466 MIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       466 ~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                          +.++++|+++++|..+++ +++|+|++||++|+.|++.+.+...
T Consensus       500 ----~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~l~~  542 (545)
T PRK08162        500 ----AHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKSLKA  542 (545)
T ss_pred             ----HHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhhhhh
Confidence                446678999999988875 6899999999999999998776543

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.2e-57  Score=471.27  Aligned_cols=465  Identities=19%  Similarity=0.193  Sum_probs=357.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchh-------HHHHHHHHHhcCc
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA-------AREIATRLRVSKA   72 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~-------~~~i~~~l~~~~~   72 (518)
                      +||+||.++++++|++|++. +++||+|+++++|+++++++++||+++|++++|+++..+       .+++..+++.+++
T Consensus        50 ~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~  129 (579)
T PRK09192         50 LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQP  129 (579)
T ss_pred             ecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCC
Confidence            69999999999999999999 999999999999999999999999999999999976432       5789999999999


Q ss_pred             eEEEechhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           73 KGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        73 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      +++|+++....      .+........ ...                ..++.++......     ........+++++++
T Consensus       130 ~~il~~~~~~~------~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i  181 (579)
T PRK09192        130 AAIITPDELLP------WVNEATHGNP-LLH----------------VLSHAWFKALPEA-----DVALPRPTPDDIAYL  181 (579)
T ss_pred             CEEEeChHHHH------HHHHhhcccc-ccc----------------eeehhhhcccCCC-----ccccCCCCCCCeEEE
Confidence            99999875431      1111111100 000                0122222211111     011112346899999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhhccc-cccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERS  227 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~-~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~  227 (518)
                      +|||||||.||+|.++|.+++.++..... .+++.++|+++.++|++|.+++.. ++.++..|+++++.+..   ..+..
T Consensus       182 ~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~  261 (579)
T PRK09192        182 QYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQ  261 (579)
T ss_pred             EecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHH
Confidence            99999999999999999999988776666 678899999999999999999876 77788899998776532   24678


Q ss_pred             HHHHHHHcCccEEEechHHHHHHHhccc---CCCCCccchhhhhccCCCCCchhhhHhhhcccc-----Cceeccccccc
Q 010114          228 FGKFVQDAGVTVLGTVPSLVKAWRNTNC---LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY-----NAIIESCGGTE  299 (518)
Q Consensus       228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~---~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~-----~~i~~~yg~tE  299 (518)
                      +++.+.+++++.++..|..+..+.....   ....+++++|.+++||+++++.+.+.+.+.+..     ..+++.||+||
T Consensus       262 ~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE  341 (579)
T PRK09192        262 WLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAE  341 (579)
T ss_pred             HHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhccccccccc
Confidence            8999999999988877766665543321   233568899999999999999998888766531     35899999999


Q ss_pred             cceeEeecCCCCC---------------------------cccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cc
Q 010114          300 LSSAYIQGSLLQP---------------------------QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FP  351 (518)
Q Consensus       300 ~~~~~~~~~~~~~---------------------------~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~  351 (518)
                      ++..+........                           ....++|.|+++++++|+|+++..++.++  .|||++ ++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~--~Gel~i~g~  419 (579)
T PRK09192        342 ATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERV--VGHICVRGP  419 (579)
T ss_pred             ceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCC--EEEEEecCC
Confidence            9865544332110                           01247899999999999999999999988  799999 76


Q ss_pred             cccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccc-
Q 010114          352 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-  430 (518)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~-  430 (518)
                      ..+.+|.  .+ ..+...+      ..++||+|||+|++ ++|+++++||.+|+|+++|++|+|.+||++|. .||+|. 
T Consensus       420 ~~~~gY~--~~-~~~~~~~------~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~-~~p~V~~  488 (579)
T PRK09192        420 SLMSGYF--RD-EESQDVL------AADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAE-QEPELRS  488 (579)
T ss_pred             chhhhhc--CC-ccccccc------cCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHH-hcCCccC
Confidence            6665532  22 2222222      34579999999999 99999999999999999999999999999997 899998 


Q ss_pred             -eeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccCCccccceEEEec--CCCCCCCchhHHHHHHHH
Q 010114          431 -ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       431 -~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~--~~P~t~~GKv~R~~l~~~  507 (518)
                       ++++++++++. + +.++++++..++...+.+++.+.+++.+.   ..++.|..+++++  .||+|++||++|++|+++
T Consensus       489 ~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~---~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~  563 (579)
T PRK09192        489 GDAAAFSIAQEN-G-EKIVLLVQCRISDEERRGQLIHALAALVR---SEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKR  563 (579)
T ss_pred             CcEEEEEeccCC-C-eeEEEEEEecCCChHHHHHHHHHHHHHHH---HHhCCCceEEEeCCCCcCCCCCcchhHHHHHHH
Confidence             89999988875 4 57888887765444455666666655442   2467777788885  899999999999999999


Q ss_pred             Hhcc
Q 010114          508 IKHE  511 (518)
Q Consensus       508 ~~~~  511 (518)
                      +.+.
T Consensus       564 ~~~~  567 (579)
T PRK09192        564 YLSG  567 (579)
T ss_pred             HHcC
Confidence            8764

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-57  Score=479.28  Aligned_cols=477  Identities=17%  Similarity=0.132  Sum_probs=350.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhH-----HHHHHHHHhcCceE
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA-----REIATRLRVSKAKG   74 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~-----~~i~~~l~~~~~~~   74 (518)
                      +||+||.++++++|++|++. +++||+|+++++|+++|++++|||+++|++++|+++.++.     +++.++++.+++++
T Consensus        81 ~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~  160 (624)
T PRK12582         81 VTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRV  160 (624)
T ss_pred             eEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcE
Confidence            69999999999999999999 9999999999999999999999999999999999999875     89999999999999


Q ss_pred             EEechhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           75 IFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        75 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      +|+++....     ..............+.+..  ..    .......+.++......  ...........++++++++|
T Consensus       161 vi~~~~~~~-----~~~~~~~~~~~~~~i~~~~--~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~y  227 (624)
T PRK12582        161 VFAQSGAPF-----ARALAALDLLDVTVVHVTG--PG----EGIASIAFADLAATPPT--AAVAAAIAAITPDTVAKYLF  227 (624)
T ss_pred             EEecCHHHH-----HHHHHhhhhcCceEEEEcC--CC----cccccccHHHHhhcCCc--chhhhhhccCCCCceEEEEE
Confidence            999763110     0000111111111111111  00    00122345555432211  00001111235689999999


Q ss_pred             ccCCCCCCceEEeccchhHHHhhhccccccCCC---CcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCCh---hH
Q 010114          155 SSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV---GDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLE---RS  227 (518)
Q Consensus       155 TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~---~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~---~~  227 (518)
                      ||||||.||||+++|.++..+............   .++++..+|++|.+++.. ++.+++.|+++++.+....+   ..
T Consensus       228 TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~  307 (624)
T PRK12582        228 TSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEE  307 (624)
T ss_pred             cCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHH
Confidence            999999999999999999887665443333333   579999999999999866 67889999999887644333   35


Q ss_pred             HHHHHHHcCccEEEechHHHHHHHhcccCC----CCCccchhhhhccCCCCCchhhhHhhhcc----c-cCceecccccc
Q 010114          228 FGKFVQDAGVTVLGTVPSLVKAWRNTNCLE----GLDWTKIRSFASTGETSNVDDDLWLSSKA----W-YNAIIESCGGT  298 (518)
Q Consensus       228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~----~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~----~-~~~i~~~yg~t  298 (518)
                      +++.++++++|+++++|.+++.|++.....    ...+++||.+++||+++++++.+++.+.+    + +.++++.||+|
T Consensus       308 ~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~T  387 (624)
T PRK12582        308 TIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGAT  387 (624)
T ss_pred             HHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccc
Confidence            677789999999999999999887653222    23468999999999999999999887652    1 35799999999


Q ss_pred             ccceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCC
Q 010114          299 ELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYK  377 (518)
Q Consensus       299 E~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (518)
                      |++.++..... .....+++|+|++|+++++++       .|+  .|||++ ++.++.+|  +.+++.+...+      +
T Consensus       388 E~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~~-------~G~--~GEl~vrg~~v~~GY--~~~p~~t~~~f------~  449 (624)
T PRK12582        388 ETAPTTTGTHW-DTERVGLIGLPLPGVELKLAP-------VGD--KYEVRVKGPNVTPGY--HKDPELTAAAF------D  449 (624)
T ss_pred             cccceeecccC-CCCCCCCCCcCCCCcEEEEcc-------CCC--ceEEEEECCcccccc--cCCccchhhhc------C
Confidence            99876543222 234567999999999999863       455  599999 77666553  22333333333      3


Q ss_pred             CceeccccceEEE-e---cCceEEEeeccCCeeee-CceecchhHHH--HHHhhcCcccceeeEEEeCCCCCCccEEEEE
Q 010114          378 GMCLRRHGDIIKR-T---VGGYIIVQGRADDTMNL-GGIKTSSVEIE--RVCDQADESILETAAISVSPAGGGPEVLVIF  450 (518)
Q Consensus       378 ~~~~~~TGD~~~~-~---~~g~l~~~gR~~d~i~~-~G~~v~~~~iE--~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~  450 (518)
                      .++||+|||+|++ |   ++|+++++||.+|++++ +|++|+|.+||  .++. +||.|.+++|++.+++..|     +.
T Consensus       450 ~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~-~~p~V~~a~VvG~~~~~~g-----~l  523 (624)
T PRK12582        450 EEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAA-CSPVIHDAVVAGQDRAFIG-----LL  523 (624)
T ss_pred             ccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHh-cCcchheEEEEcCCCCcEE-----EE
Confidence            5689999999998 4   56999999999999995 79999999885  5675 8999999999998765444     33


Q ss_pred             EEecCC----------C----CCChhHHHHHHHHHH---HhccCCcc-ccceEEEecCCC------CCCCchhHHHHHHH
Q 010114          451 VVLKKG----------F----TSQPDKLKMIFSKAI---QSKLNPLF-KVSLVKVVPEFP------RTASNKLLRRVLRD  506 (518)
Q Consensus       451 v~~~~~----------~----~~~~~~l~~~~~~~~---~~~l~~~~-~p~~i~~v~~~P------~t~~GKv~R~~l~~  506 (518)
                      |++...          .    ..+.+++.+.+++.+   ++.++.+. +|.++.+++++|      +|++||+.|+.+.+
T Consensus       524 v~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~  603 (624)
T PRK12582        524 AWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLE  603 (624)
T ss_pred             EecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHH
Confidence            332211          0    013355666665555   45677777 999999999877      56788899999999


Q ss_pred             HHhccccc
Q 010114          507 QIKHELSV  514 (518)
Q Consensus       507 ~~~~~~~~  514 (518)
                      .|+++|+.
T Consensus       604 ~y~~~i~~  611 (624)
T PRK12582        604 RRAALVER  611 (624)
T ss_pred             HHHHHHHH
Confidence            99998875

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9e-58  Score=429.00  Aligned_cols=492  Identities=19%  Similarity=0.178  Sum_probs=384.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCE-EEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~-V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||.|+.+++.++|++|... ++++++ ++|+++.+.+|+.+++||++-+.+.|.+...+.++.+.+-|++++++.||++
T Consensus        90 ~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~  169 (678)
T KOG1180|consen   90 MSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTD  169 (678)
T ss_pred             ecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeC
Confidence            58999999999999999999 886665 9999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCcchhhhhccCCC-ceeecccc-ccCC---CCC----CcccccchhhhhccCCCCCCCCCCCCCCCCCCCE
Q 010114           79 DFILRGGRKFPLYSKVLGAAPL-KAIVLPAI-GNDV---GIP----LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV  149 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (518)
                      .+.+      +.+...+..... +.++..+. +...   ..+    .....++|++++..++...    .++.+..++|+
T Consensus       170 ~~LL------~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~----~~~~~P~p~Di  239 (678)
T KOG1180|consen  170 SELL------PKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE----IPPHPPKPSDI  239 (678)
T ss_pred             HHHH------HHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC----CCCCCCCCCce
Confidence            9755      344444333333 33333321 1111   111    2356689999999888633    33344467999


Q ss_pred             EEEEeccCCCCCCceEEeccchhHHHhhhccccc-cCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCCh---
Q 010114          150 VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE---  225 (518)
Q Consensus       150 ~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~---  225 (518)
                      |+|+|||||||.||||+++|.|+++.+....... .+.+.|+++.++||.|.+.+..=+.+++.|+.+-+.++....   
T Consensus       240 a~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts  319 (678)
T KOG1180|consen  240 ACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTS  319 (678)
T ss_pred             EEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccc
Confidence            9999999999999999999999999988777765 689999999999999999999888899999999877653211   


Q ss_pred             ----hHHHHHHHHcCccEEEechHHHHHHHhc--------------------------ccCCCCC---------------
Q 010114          226 ----RSFGKFVQDAGVTVLGTVPSLVKAWRNT--------------------------NCLEGLD---------------  260 (518)
Q Consensus       226 ----~~~~~~i~~~~~t~l~~~P~~~~~l~~~--------------------------~~~~~~~---------------  260 (518)
                          ..---.+...|||+|.++|..++++.+.                          .+..+..               
T Consensus       320 ~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~  399 (678)
T KOG1180|consen  320 SKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRAL  399 (678)
T ss_pred             hhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHH
Confidence                1122346778999999999999987543                          0001110               


Q ss_pred             -ccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEEC-CCCCCCC
Q 010114          261 -WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYP  338 (518)
Q Consensus       261 -l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~  338 (518)
                       --+||++++||.+|++++++++...+ +|++.++||.||++...+.....+ ...+.+|.|++-++++++| ++|-=.+
T Consensus       400 lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~d-~~~g~vG~pl~c~eiKLvdw~EgGY~~  477 (678)
T KOG1180|consen  400 LGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPED-FSTGRVGAPLPCCEIKLVDWEEGGYFA  477 (678)
T ss_pred             hCCceEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChhh-cccccccCCccceEEEEEEhhhcCccC
Confidence             12689999999999999999998776 679999999999987665555433 3456999999999999999 4443333


Q ss_pred             CCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeee-Cceecchh
Q 010114          339 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSV  416 (518)
Q Consensus       339 ~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~  416 (518)
                      .+.+..|||++ |+++..+|  |.+++.+...|..   .+|++||+|||+|++.+||+|.+++|.+|.+|. +|+.|+++
T Consensus       478 ~~~PPrGEI~i~G~~vt~gY--~kn~ekT~e~ft~---~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~  552 (678)
T KOG1180|consen  478 KNKPPRGEILIGGPNVTMGY--YKNEEKTKEDFTV---EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLG  552 (678)
T ss_pred             CCCCCCceEEecCCccChhh--hCChhhhhhhcee---cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehH
Confidence            33323699999 77776653  5566666666643   578889999999999999999999999999995 99999999


Q ss_pred             HHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC----------CC-Ch----------hHHHHHHHHHH-Hh
Q 010114          417 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------TS-QP----------DKLKMIFSKAI-QS  474 (518)
Q Consensus       417 ~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~----------~~-~~----------~~l~~~~~~~~-~~  474 (518)
                      -+|.++. ..|-|...||++....    ..++++|++++..          .. +-          +++.+.+.+.. .+
T Consensus       553 KvEa~l~-s~p~V~NICvyAd~~~----s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~  627 (678)
T KOG1180|consen  553 KVEAALR-SSPYVDNICVYADSNK----SKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQ  627 (678)
T ss_pred             HHHHHHh-cCcchhheEEeccccc----ceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhc
Confidence            9999997 9999999999986543    6799999988631          11 11          12222232222 57


Q ss_pred             ccCCccccceEEEecCCC------CCCCchhHHHHHHHHHhccccc
Q 010114          475 KLNPLFKVSLVKVVPEFP------RTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P------~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      +|..+.+|..|++.+.--      .|+.-|+.|+.++..|++++++
T Consensus       628 ~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~  673 (678)
T KOG1180|consen  628 KLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDR  673 (678)
T ss_pred             ccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHH
Confidence            899999999999998633      4777899999999999999875

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-55  Score=460.92  Aligned_cols=474  Identities=18%  Similarity=0.176  Sum_probs=341.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEeccc---chhHHHHHHHHHhcCceEEEe
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD---SFAAREIATRLRVSKAKGIFT   77 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~---~~~~~~i~~~l~~~~~~~ii~   77 (518)
                      +||+||.++++++|++|++.-.+||+|+++++|+++|++++|||+++|++++|+++   ..+.+++.++++.++++++++
T Consensus        36 lty~eL~~~v~~~A~~L~~~g~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~  115 (578)
T PRK05850         36 LTWSQLYRRTLNVAEELRRHGSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLT  115 (578)
T ss_pred             ecHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEE
Confidence            69999999999999999988347999999999999999999999999999999997   457889999999999999999


Q ss_pred             chhhhccCCCCcchhhhhccC---CCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           78 QDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      ++....      .+.......   ....++..               ...++..  ..     .........+++++++|
T Consensus       116 ~~~~~~------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~--~~-----~~~~~~~~~~d~a~i~~  167 (578)
T PRK05850        116 TSAVVD------DVTEYVAPQPGQSAPPVIEV---------------DLLDLDS--PR-----GSDARPRDLPSTAYLQY  167 (578)
T ss_pred             cHHHHH------HHHHHHhhcccccccceEee---------------ccccccc--CC-----ccccCCCCCCCeEEEEe
Confidence            875431      111111100   00000000               0000000  00     00111234689999999


Q ss_pred             ccCCCCCCceEEeccchhHHHhhhcccc-cc-----CCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CC
Q 010114          155 SSGTTGEPKAIPWTQLSSIRCTAEGWAH-ID-----LKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PL  224 (518)
Q Consensus       155 TSGtTG~pK~v~~s~~~~~~~~~~~~~~-~~-----~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~  224 (518)
                      ||||||.||||.++|.+++.++...... +.     ...++++++.+|++|.+|+.. ++.+++.|+++++.++.   .+
T Consensus       168 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  247 (578)
T PRK05850        168 TSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQR  247 (578)
T ss_pred             CCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHC
Confidence            9999999999999999998776543322 12     356789999999999999865 88999999999988743   25


Q ss_pred             hhHHHHHHHHcCccEEEechHHHHHHHhcc---cCCCCCccchhhhhccCCCCCchhhhHhhhccc-----cCceecccc
Q 010114          225 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTN---CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCG  296 (518)
Q Consensus       225 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~---~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-----~~~i~~~yg  296 (518)
                      +..+++.+++++++.+..++..+..+....   .....+++++|.+++||+++++++.+++.+.+.     ...+++.||
T Consensus       248 p~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG  327 (578)
T PRK05850        248 PARWMQLLASNPHAFSAAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYG  327 (578)
T ss_pred             HHHHHHHHHHcCCeEEeCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccc
Confidence            788999999999986644444444443322   112346789999999999999999888877652     246899999


Q ss_pred             ccccceeEeecCCCCC------------------------cccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-c
Q 010114          297 GTELSSAYIQGSLLQP------------------------QAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F  350 (518)
Q Consensus       297 ~tE~~~~~~~~~~~~~------------------------~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~  350 (518)
                      +||++..+........                        ....+.|.|. +.+++++| +++.+++.|+  .|||++ +
T Consensus       328 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~--~Gel~v~g  404 (578)
T PRK05850        328 LAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGT--VGEIWVHG  404 (578)
T ss_pred             hhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCC--EEEEEEec
Confidence            9998754332211100                        0011234443 56889988 5678899998  699999 7


Q ss_pred             ccccCCccccccccccceeeeCC---C--CCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhc
Q 010114          351 PLYLGASDRLLNADHEEVYFRGM---P--MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA  425 (518)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~  425 (518)
                      +.++.+|  +.+++.+...|...   +  ....++||+|||+|+++ ||++++.||.+|+|+++|++|+|.+||++|. +
T Consensus       405 ~~~~~gY--~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~-~  480 (578)
T PRK05850        405 DNVAAGY--WQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQ-E  480 (578)
T ss_pred             Ccccccc--cCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHH-H
Confidence            7766654  33444444333210   1  01134799999999997 9999999999999999999999999999998 8


Q ss_pred             CcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhH--HHHHHHHHHHhccCCc--cccceEEEec--CCCCCCCchh
Q 010114          426 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK--LKMIFSKAIQSKLNPL--FKVSLVKVVP--EFPRTASNKL  499 (518)
Q Consensus       426 ~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~--l~~~~~~~~~~~l~~~--~~p~~i~~v~--~~P~t~~GKv  499 (518)
                      ||.+ ++++++++++ .+ +.++++++++++...+.++  ..+.+++.+.+.++.+  ..|..+.+++  .||+|++||+
T Consensus       481 ~~~~-~~~v~~v~~~-~~-~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi  557 (578)
T PRK05850        481 ITGG-RVAAISVPDD-GT-EKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKI  557 (578)
T ss_pred             hcCC-cEEEEEecCC-Cc-eEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchH
Confidence            9885 5788888876 55 7899999988764433332  2344555454444322  3466677775  8999999999


Q ss_pred             HHHHHHHHHhccc
Q 010114          500 LRRVLRDQIKHEL  512 (518)
Q Consensus       500 ~R~~l~~~~~~~~  512 (518)
                      +|++|+++|.+.+
T Consensus       558 ~R~~l~~~~~~~~  570 (578)
T PRK05850        558 RRAACVEQYRQDE  570 (578)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999987654

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.2e-55  Score=452.75  Aligned_cols=460  Identities=19%  Similarity=0.162  Sum_probs=346.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHH-------HHHHHHhcCc
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAARE-------IATRLRVSKA   72 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~-------i~~~l~~~~~   72 (518)
                      +||.||+++++++|++|.+. +++||+|+++++|+++++++++||+++|++++++++..+..+       +..+++.+++
T Consensus        30 ~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  109 (545)
T PRK07768         30 HTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGA  109 (545)
T ss_pred             ecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCC
Confidence            59999999999999999999 999999999999999999999999999999999998776543       4556888999


Q ss_pred             eEEEechhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           73 KGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        73 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      +.+++++......      .. .....                  ...+.+.++......       .+....+++++++
T Consensus       110 ~~v~~~~~~~~~~------~~-~~~~~------------------~~~~~~~~l~~~~~~-------~~~~~~~~~~a~i  157 (545)
T PRK07768        110 KAVVVGEPFLAAA------PV-LEEKG------------------IRVLTVADLLAADPI-------DPVETGEDDLALM  157 (545)
T ss_pred             CEEEecchhhhhh------hh-hcccC------------------CceeehhhhcccCCC-------CcCCCCCCCEEEE
Confidence            9999987432111      00 00000                  011233443332111       1123356899999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhhccccccCCCC-cEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG-DVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERS  227 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~-d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~  227 (518)
                      +|||||||.||+|+++|.++...+......+++.++ |++++.+|++|.+++.. ++.++..|+++++.++.   .++..
T Consensus       158 ~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~  237 (545)
T PRK07768        158 QLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLL  237 (545)
T ss_pred             EeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHH
Confidence            999999999999999999998888776667777776 89999999999999876 77789999999887642   25677


Q ss_pred             HHHHHHHcCccEEEechHHHHHHHhcc----cCCCCCccchhhhhccCCCCCchhhhHhhhc---cc--cCceecccccc
Q 010114          228 FGKFVQDAGVTVLGTVPSLVKAWRNTN----CLEGLDWTKIRSFASTGETSNVDDDLWLSSK---AW--YNAIIESCGGT  298 (518)
Q Consensus       228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~----~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~---~~--~~~i~~~yg~t  298 (518)
                      +.+.+++++++++..+|..+..+.+..    .....+++++|.++++|+++++...+++.+.   +.  ...+++.||+|
T Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~t  317 (545)
T PRK07768        238 WAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMA  317 (545)
T ss_pred             HHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccccc
Confidence            889999999999988888877665432    1224678899999999999999998887753   21  23599999999


Q ss_pred             ccceeEeecCCCC-------------------------CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-ccc
Q 010114          299 ELSSAYIQGSLLQ-------------------------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPL  352 (518)
Q Consensus       299 E~~~~~~~~~~~~-------------------------~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~  352 (518)
                      |++..+.......                         ....+++|.|++++.++++|++|++++.|+  .||+++ ++.
T Consensus       318 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~--~Gel~v~~~~  395 (545)
T PRK07768        318 EATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRG--VGVIELRGES  395 (545)
T ss_pred             ccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCCC--EEEEEEccCc
Confidence            9987544322210                         113457899999999999999999999998  699999 555


Q ss_pred             ccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCccccee
Q 010114          353 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET  432 (518)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~  432 (518)
                      +..+|+   +.....      +....++||+|||+++++++|+++++||.+|+++++|.+|+|.+||+.|. .+|+|.++
T Consensus       396 ~~~gy~---~~~~~~------~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~  465 (545)
T PRK07768        396 VTPGYL---TMDGFI------PAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAA-RVEGVRPG  465 (545)
T ss_pred             cccccc---CCCCCc------ccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHH-hCcccccc
Confidence            554432   111111      11234579999999999999999999999999999999999999999997 89999998


Q ss_pred             eEEEeC--CCCCCccEEEEEEEecCCCCCChh---HHHHHHHHHHHhccCCccccceEEEec--CCCCCCCchhHHHHHH
Q 010114          433 AAISVS--PAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVLR  505 (518)
Q Consensus       433 ~vv~~~--~~~~g~~~~~~~v~~~~~~~~~~~---~l~~~~~~~~~~~l~~~~~p~~i~~v~--~~P~t~~GKv~R~~l~  505 (518)
                      +|++++  +...+ +...+++...++  .+..   ++.+.+++.+...+.  ..|..+.+++  .||+|++||++|+.|+
T Consensus       466 ~vv~~~~~~~~~~-~~~~~~v~~~~~--~~~~~~~~l~~~~~~~l~~~~~--~~p~~v~~v~~~~lP~t~~GKi~r~~l~  540 (545)
T PRK07768        466 NAVAVRLDAGHSR-EGFAVAVESNAF--EDPAEVRRIRHQVAHEVVAEVG--VRPRNVVVLGPGSIPKTPSGKLRRANAA  540 (545)
T ss_pred             eEEEEEecCCCCc-eEEEEEEEeccc--ccHHHHHHHHHHHHHHHHHHhC--CCccEEEEeCCCcCCCCCchhHHHHHHH
Confidence            887664  33333 445544444332  2222   334444433332222  5678888886  8999999999999999


Q ss_pred             HHHh
Q 010114          506 DQIK  509 (518)
Q Consensus       506 ~~~~  509 (518)
                      ++|.
T Consensus       541 ~~~~  544 (545)
T PRK07768        541 ELVT  544 (545)
T ss_pred             HhcC
Confidence            9875

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-53  Score=403.05  Aligned_cols=483  Identities=21%  Similarity=0.197  Sum_probs=370.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+|+++.++++|+.|..+ ++.||+|+++|+|.+|++.++|+++++|++...||+++..+.+.|.++.++++.+|+++
T Consensus       105 ~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~  184 (649)
T KOG1179|consen  105 LTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGP  184 (649)
T ss_pred             eeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECH
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      +..+.....   ...........+...  ..    ....+..++...++.....+.+. ......+-.++++++||||||
T Consensus       185 el~~~~~e~---~~~l~~~~i~~~~~~--~~----~~~~g~~~L~~~l~~~~~~~vp~-~~~~~~~~~s~~lyIYTSGTT  254 (649)
T KOG1179|consen  185 ELLNALEEI---LPLLIKNGIHVFSLG--PT----SVPDGIESLLAKLSAAPKHPVPV-STRSGLTFRSPLLYIYTSGTT  254 (649)
T ss_pred             HHHHHHHhc---chhhhhccceEEecC--CC----CCCchHHHHHHhhcccccCCCCc-ccCCCccccceeEEEEcCCCC
Confidence            765322211   011111111111111  00    01122223333333222211110 222334556899999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      |.||+.+++|.............++++++|+++.++|++|+.+.+. +.+++..|+++++.. .++...||+...+++||
T Consensus       255 GLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vlrk-KFSAS~FW~DC~k~~~T  333 (649)
T KOG1179|consen  255 GLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRK-KFSASNFWDDCRKYNVT  333 (649)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEec-ccchhhhHHHHHHhCCe
Confidence            9999999999998888876777899999999999999999999876 889999999999976 78889999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCC
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF  318 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~  318 (518)
                      ++.-...+.+.|+.++......-+++|.++-.|  |.+++++.|.++|+..+|.+.||+||..+..+.. .   .+.|.+
T Consensus       334 v~QYIGElcRYLl~~p~~~~er~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~-d---~~vGA~  407 (649)
T KOG1179|consen  334 VIQYIGELCRYLLNQPPSPEERQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY-D---GRVGAC  407 (649)
T ss_pred             eeehHHHHHHHHHcCCCChhhcCceEEEEecCC--CCchHHHHHHHHcCCCeEEEEeccccCcceeeee-c---Cccccc
Confidence            999999999999999887777778999988888  7799999999999877899999999976644332 2   233344


Q ss_pred             Cccc------ccccEE---------EECCCCC--CCCCCCCeeeeeee---cccccCCcccccc-ccccceeeeCCCCCC
Q 010114          319 STAT------MTAGLV---------ILDECGV--PYPDDQPCVGEVGL---FPLYLGASDRLLN-ADHEEVYFRGMPMYK  377 (518)
Q Consensus       319 g~~~------~~~~~~---------i~~~~g~--~~~~~~~~~Gel~v---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  377 (518)
                      |+-.      .-+++.         |.|++|.  ++++||+  |.++-   .......+..|.+ ...+++....+.+..
T Consensus       408 G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEp--GlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkk  485 (649)
T KOG1179|consen  408 GFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEP--GLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKK  485 (649)
T ss_pred             cchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCC--ceEEEEeccCCchhhhccccCchhhhhhhhHHhhhcc
Confidence            4311      111221         1223333  4566664  64431   2222111233444 666677777788889


Q ss_pred             CceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC
Q 010114          378 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF  457 (518)
Q Consensus       378 ~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~  457 (518)
                      |+-||.|||+-.+|+.|+++|.+|..|.+..+|++|+..|||++|. ...++.|+.|+++.-+..+...-.|.|++.++.
T Consensus       486 GD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~-~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~  564 (649)
T KOG1179|consen  486 GDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLS-ALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTT  564 (649)
T ss_pred             CcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHh-hhccccceeEEEEecCCccCccceEEEEecCcc
Confidence            9999999999999999999999999999999999999999999997 899999999999964433225566777777766


Q ss_pred             CCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHH
Q 010114          458 TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       458 ~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~  507 (518)
                      ..+.+.+-..    +.+.||+|.+|..+.+.+++++|.|-|..+..|.+.
T Consensus       565 ~~d~~~l~~~----l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e  610 (649)
T KOG1179|consen  565 EKDLEKLYQH----LRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE  610 (649)
T ss_pred             cchHHHHHHH----HHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence            6565555544    678899999999999999999999999999988764

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.1e-51  Score=413.82  Aligned_cols=397  Identities=21%  Similarity=0.209  Sum_probs=322.1

Q ss_pred             CHHHHHHHHHHHHHHHhh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            2 TYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         2 Ty~el~~~~~~la~~L~~-~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      ||.||.+.++++|+.|.+ . +++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++.+++++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            899999999999999998 6 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .........          ......+..              .+........   .. .........+++++++||||||
T Consensus        81 ~~~~~~~~~----------~~~~~~~~~--------------~~~~~~~~~~---~~-~~~~~~~~~~~~~~i~~TSGTt  132 (408)
T TIGR01733        81 ALASRLAGL----------VLPIILVDP--------------LELAALDDAP---AP-PPPDAPSGPDDLAYVIYTSGST  132 (408)
T ss_pred             chhhhcccc----------CCceEEech--------------hhhhhccccc---cc-ccccCCCCCCCcEEEEEcCCCC
Confidence            543211110          001111100              0000000000   00 0011113468999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCC--hhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~--~~~~~~~i~~~~~  237 (518)
                      |.||+|.++|.+++.........+.+.++|++++..|++|.+++..++.++..|+++++.++...  +..+.+.++++++
T Consensus       133 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (408)
T TIGR01733       133 GRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPV  212 (408)
T ss_pred             CCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCc
Confidence            99999999999999988887778888899999999999999999889999999999999886554  6788899999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC--CCc--
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQ--  313 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~--~~~--  313 (518)
                      |.+.++|.+++.+++...   ..++++|.++.+|+++++++.+.+.+.+++..+++.||+||++.++......  ...  
T Consensus       213 t~l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~  289 (408)
T TIGR01733       213 TVLNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRE  289 (408)
T ss_pred             eEEEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCc
Confidence            999999999999988764   5678999999999999999999999888668899999999998766422221  111  


Q ss_pred             ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCc--eeccccceEEE
Q 010114          314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGM--CLRRHGDIIKR  390 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~TGD~~~~  390 (518)
                      ...++|.|+++++++|+|+++++++.|+  .||+++ ++..+.+|  +.+...+...+...+....+  .||+|||++++
T Consensus       290 ~~~~~G~~~~~~~~~i~~~~~~~~~~g~--~Gel~v~~~~~~~gy--~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~  365 (408)
T TIGR01733       290 SPVPIGRPLANTRLYVLDDDLRPVPVGV--VGELYIGGPGVARGY--LNRPELTAERFVPDPFAGGDGARLYRTGDLVRY  365 (408)
T ss_pred             cccccCcccCCceEEEECCCCCCCCCCC--ceEEEecCccccccc--cCChhhhhcceeeCCCCCCCCceEEECCceEEE
Confidence            2678999999999999999999999998  699999 66666654  33444444444443333333  49999999999


Q ss_pred             ecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeE
Q 010114          391 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA  434 (518)
Q Consensus       391 ~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v  434 (518)
                      |++|++++.||.+|+++++|++++|.+||+++. .+|.|.+++|
T Consensus       366 d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~-~~~~v~~~~v  408 (408)
T TIGR01733       366 LPDGNLEFLGRIDDQVKIRGYRIELGEIEAALL-RHPGVREAVV  408 (408)
T ss_pred             cCCCCEEEeeccCCEEEeCeEEechHHHHHHHh-cCcchhhhcC
Confidence            999999999999999999999999999999997 9999998874

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=7.7e-51  Score=408.86  Aligned_cols=380  Identities=25%  Similarity=0.292  Sum_probs=286.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|..|++. +++||+|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++|+.+
T Consensus        22 ~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~  101 (417)
T PF00501_consen   22 LTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSE  101 (417)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECH
T ss_pred             EEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccccccccccccccccceeEEEEec
Confidence            59999999999999999988 99999999999999999999999999999999999999999999999999999999710


Q ss_pred             hhhccCCCCc--chhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCC-CCCCCEEEEEecc
Q 010114           80 FILRGGRKFP--LYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY-NPVDAVVNILFSS  156 (518)
Q Consensus        80 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~TS  156 (518)
                      ..    +...  .+............++........   ...............          .. ..++++++++|||
T Consensus       102 ~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~TS  164 (417)
T PF00501_consen  102 AV----DSEPLKKLKSIFKQEDPSSSIIILDRDDLP---KKEALKSASLSDEPQ----------SPEDSPDDPAFILFTS  164 (417)
T ss_dssp             HH----SCHHHHHHHHHHTTSTTTEEEEEESHSSCT---TCHHHHHHHHCHCSH----------STTHTTTSEEEEEEES
T ss_pred             cc----cccccccchhhhcccccccccccccccccc---ccccccccccccccc----------cCCCCccceeEeeccc
Confidence            00    0011  111222211111111111100000   000000000000000          00 0458999999999


Q ss_pred             CCCCCCceEEeccchhHHHhhhcc--ccccCCCCcEEEeecCchhhhhh-HHHHHhhhcCcEEEEecCCCC--hhHHHHH
Q 010114          157 GTTGEPKAIPWTQLSSIRCTAEGW--AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPL--ERSFGKF  231 (518)
Q Consensus       157 GtTG~pK~v~~s~~~~~~~~~~~~--~~~~~~~~d~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~~--~~~~~~~  231 (518)
                      ||||.||+|.++|+++++.+....  ...+++  |++++.+|++|.+|+ ..++.+++.|+++++.+....  +..+++.
T Consensus       165 GTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~  242 (417)
T PF00501_consen  165 GTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLEL  242 (417)
T ss_dssp             SSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccccccccccccccccccccchhc
Confidence            999999999999999999877643  122223  699999999999999 559999999999999985433  4678899


Q ss_pred             HHHcCccEEEechHHHHHHHhcccC----CCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeec
Q 010114          232 VQDAGVTVLGTVPSLVKAWRNTNCL----EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG  307 (518)
Q Consensus       232 i~~~~~t~l~~~P~~~~~l~~~~~~----~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~  307 (518)
                      ++++++|+++++|++++.+++..+.    ...+++++|.++++|+++++++.+++.+.++..++++.||+||++.+++..
T Consensus       243 i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~  322 (417)
T PF00501_consen  243 ISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIR  322 (417)
T ss_dssp             HHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceecccccccceeeecc
Confidence            9999999999999999999984322    245788999999999999999999999888655899999999999987655


Q ss_pred             C-CCCCcccCCCCcccccccEEEECCC-CCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccc
Q 010114          308 S-LLQPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH  384 (518)
Q Consensus       308 ~-~~~~~~~~~~g~~~~~~~~~i~~~~-g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T  384 (518)
                      . .......+++|.|+++++++|+|++ +++++.|+  .|||++ ++..+.+|+.  +++.+...+..      ++||+|
T Consensus       323 ~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~--~Gei~i~~~~~~~gy~~--~~~~~~~~~~~------~~~~~T  392 (417)
T PF00501_consen  323 PPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGE--PGEIVIRGPNVFSGYYN--DPELTAEAFID------DGWYRT  392 (417)
T ss_dssp             ETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTS--EEEEEEESTTSBSEETT--BHHHHHHHEET------TSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc--cccccccCCccceeeec--ccccccccccc------ccceec
Confidence            3 3333466789999999999999987 99999999  699999 6666655432  33333333321      459999


Q ss_pred             cceEEEecCceEEEeeccCCeeeeC
Q 010114          385 GDIIKRTVGGYIIVQGRADDTMNLG  409 (518)
Q Consensus       385 GD~~~~~~~g~l~~~gR~~d~i~~~  409 (518)
                      ||+|++|+||+++++||.+|+||++
T Consensus       393 GD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  393 GDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             EEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             ceEEEECCCCeEEEEEeeCCEEEeC
Confidence            9999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.4e-46  Score=365.26  Aligned_cols=320  Identities=18%  Similarity=0.167  Sum_probs=262.1

Q ss_pred             CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEE--ecCC
Q 010114          145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLAL--YQGS  222 (518)
Q Consensus       145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~--~~~~  222 (518)
                      .++++++++|||||||.||+|+++|.++..+.......  +...++.+..+|++|.+++..++.++..|+++++  .+..
T Consensus        33 ~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~~  110 (358)
T PRK07824         33 IDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSAG  110 (358)
T ss_pred             CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCCC
Confidence            45899999999999999999999999998877654443  3456788999999999999888889999999888  4445


Q ss_pred             CChhHHHHHHHHcC--ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceecccccccc
Q 010114          223 PLERSFGKFVQDAG--VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL  300 (518)
Q Consensus       223 ~~~~~~~~~i~~~~--~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~  300 (518)
                      .++..+++.+++++  .++...+|..+..++.... ...+++++|.++++|+++++++.+++.+.  ++++++.||+||+
T Consensus       111 ~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~  187 (358)
T PRK07824        111 FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSET  187 (358)
T ss_pred             cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCcc
Confidence            67889999999998  5666778888877766543 23467899999999999999998888753  6889999999998


Q ss_pred             ceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCc
Q 010114          301 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGM  379 (518)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (518)
                      +..+           ...|.|++++++++.|             ||+++ ++....+|.   +..... .      ...+
T Consensus       188 ~~~~-----------~~~G~~~~g~~v~i~~-------------Gei~v~g~~~~~gY~---~~~~~~-~------~~~~  233 (358)
T PRK07824        188 SGGC-----------VYDGVPLDGVRVRVED-------------GRIALGGPTLAKGYR---NPVDPD-P------FAEP  233 (358)
T ss_pred             CCCc-----------CcCceeCCCCEEEecC-------------CEEEEecCccccccC---CCcccc-c------ccCC
Confidence            7532           1357899999999833             88988 665555432   222111 1      1234


Q ss_pred             eeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC
Q 010114          380 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS  459 (518)
Q Consensus       380 ~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~  459 (518)
                      +||+|||++++ ++|.+++.||.+|+|+++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++++.+++...
T Consensus       234 g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~vv~~~~~~~g-~~~~a~v~~~~~~~~  310 (358)
T PRK07824        234 GWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALA-THPAVADCAVFGLPDDRLG-QRVVAAVVGDGGPAP  310 (358)
T ss_pred             CceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEecCCCCCc-eEEEEEEEeCCCCCc
Confidence            59999999999 89999999999999999999999999999998 9999999999999998888 889999887765444


Q ss_pred             ChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          460 QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       460 ~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      +.+++.+    ++++.|+.+++|..|+++++||+|++||++|++|+++|.+
T Consensus       311 ~~~~i~~----~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        311 TLEALRA----HVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             CHHHHHH----HHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence            5444444    4677899999999999999999999999999999999875

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.3e-43  Score=386.68  Aligned_cols=452  Identities=13%  Similarity=0.079  Sum_probs=315.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+|+.+++.++|++|.+. +++||+|+|+++|++||+++.+||+++|++.+|+++.  ..++.+++++++++++|++.
T Consensus       458 lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~  535 (1452)
T PTZ00297        458 LTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADR  535 (1452)
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEch
Confidence            59999999999999999999 9999999999999999999999999999999999764  56899999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccc-cCC--CCC--CcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEe
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIG-NDV--GIP--LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF  154 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  154 (518)
                      +...      .+...... ....++..... ...  ...  .....++|.+++..+.....   ......++++++.++|
T Consensus       536 ~~l~------kl~~i~~~-~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~---~~~~~~~~dDlatIiY  605 (1452)
T PTZ00297        536 NSVA------AILTCRSR-KLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPV---PLKEHVTTDTVFTYVV  605 (1452)
T ss_pred             hHHH------HHHhhccc-CCcEEEEECCCcccccccccccCCcceeeHHHHHhcCcccCc---cccCCCCcccEEEEEe
Confidence            5432      22222221 22233322110 000  000  01134678888876542111   1122336688999985


Q ss_pred             ---ccCCCCCCceEEeccchhHHHhhhccccc---cCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHH
Q 010114          155 ---SSGTTGEPKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSF  228 (518)
Q Consensus       155 ---TSGtTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  228 (518)
                         ||||||.||||++||+|++.++.......   ...++|++++++|++|.++....+.+++.|+++..    .++..+
T Consensus       606 tSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~----~d~~~l  681 (1452)
T PTZ00297        606 DNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVAT----VDAAHL  681 (1452)
T ss_pred             cCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEe----CCHHHH
Confidence               99999999999999999999887654321   35678999999999999997777888999999864    346899


Q ss_pred             HHHHHHcCccEEEechHHHHHHHhcccCC--------------------------CCC--------c--------cchhh
Q 010114          229 GKFVQDAGVTVLGTVPSLVKAWRNTNCLE--------------------------GLD--------W--------TKIRS  266 (518)
Q Consensus       229 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------~~~--------l--------~~lr~  266 (518)
                      ++.|++++||+++++|.+++.+.......                          +..        +        .++|.
T Consensus       682 ledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~  761 (1452)
T PTZ00297        682 QRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEK  761 (1452)
T ss_pred             HHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEE
Confidence            99999999999999999999875431100                          000        0        24566


Q ss_pred             hhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeee
Q 010114          267 FASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE  346 (518)
Q Consensus       267 i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Ge  346 (518)
                      +++||.   ++...+....  +.++..+||+||+.   +.+.... .  ...|.|+|+++++|.+....-....   .||
T Consensus       762 ~isGga---~~~l~~~l~~--~i~i~~g~glTE~~---~~~~~~~-~--~~~G~PlpgvEvKI~~~~E~~~~~~---~GE  827 (1452)
T PTZ00297        762 IVLCVS---EESTSFSLLE--HISVCYVPCLREVF---FLPSEGV-F--CVDGTPAPSLQVDLEPFDEPSDGAG---IGQ  827 (1452)
T ss_pred             EEECCC---ccccChHHhC--CceEEEecceEEee---eecCCCC-c--ccCCeecCceEEEEcccccccCCCC---CCe
Confidence            666652   1222222222  35678899999953   2222211 1  2339999999999987321111112   499


Q ss_pred             eeecccccCCccccccccccceeeeCCCCCCCceeccccce-EEEecCceEEEeeccCCeeee-CceecchhHHHHHHhh
Q 010114          347 VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI-IKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQ  424 (518)
Q Consensus       347 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~-~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~  424 (518)
                      |+++.        ..++                  -.|++. +.|++||+|.|+||.+|+||. +|++|.|+.||+.+. 
T Consensus       828 Ilvr~--------~kdp------------------e~T~e~~~gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~-  880 (1452)
T PTZ00297        828 LVLAK--------KGEP------------------RRTLPIAAQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFS-  880 (1452)
T ss_pred             EEEEE--------CCCh------------------HHHHHhhCcCccCCeEEEEeccccceECCCCcEEcHHHHHHHHh-
Confidence            98831        0111                  234443 356689999999999999995 999999999999997 


Q ss_pred             cCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC-------------------ChhHHHH----HHHHH---HH--hcc
Q 010114          425 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS-------------------QPDKLKM----IFSKA---IQ--SKL  476 (518)
Q Consensus       425 ~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~-------------------~~~~l~~----~~~~~---~~--~~l  476 (518)
                      ++|.|.+++|++...     ..++|+|++..+.-.                   +..++.+    .+.+.   +.  ..+
T Consensus       881 ~sp~I~qi~V~Gd~~-----k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l  955 (1452)
T PTZ00297        881 QSRYVNDIFLYADPS-----RPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGL  955 (1452)
T ss_pred             cCCCccEEEEEecCC-----CceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCc
Confidence            899999999998653     347888887642110                   2222222    12222   21  235


Q ss_pred             CCccccceEEEec-CC-----CCCCCchhHHHHHHHHHhccccc
Q 010114          477 NPLFKVSLVKVVP-EF-----PRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       477 ~~~~~p~~i~~v~-~~-----P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      ..+.+++.+.+++ .+     -.|++.|+.|..+.+.|+++|+.
T Consensus       956 ~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~  999 (1452)
T PTZ00297        956 HPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIER  999 (1452)
T ss_pred             CccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHH
Confidence            6678887777765 44     37999999999999999998875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=1.2e-40  Score=325.11  Aligned_cols=289  Identities=14%  Similarity=0.126  Sum_probs=226.9

Q ss_pred             CCEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCC--CcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCC
Q 010114          147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV--GDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP  223 (518)
Q Consensus       147 ~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~--~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~  223 (518)
                      ++.++++|||||||.||+|.++|.+++..+......+++..  .|++++.+|++|.+++.. ++.++..|+++++.+ .+
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~-~~  173 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA-AA  173 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC-CC
Confidence            56788999999999999999999999888776666666644  468999999999999855 788899999998876 45


Q ss_pred             ChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceecccccccccee
Q 010114          224 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA  303 (518)
Q Consensus       224 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~  303 (518)
                      ++..+++.++.  .|+++++|++++.+.+..    .++++++. +++|++++++..+.+.+. +...+++.||+||++++
T Consensus       174 ~~~~~l~~i~~--~t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i  245 (386)
T TIGR02372       174 PASGIMRHARP--GDLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI  245 (386)
T ss_pred             ChHHHHHhhcc--CCEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence            66777777654  389999999999997653    34677775 678999999999988764 33468999999999875


Q ss_pred             EeecCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCceecc
Q 010114          304 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRR  383 (518)
Q Consensus       304 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (518)
                      .....      .+..|.+.|+.++.+ + ++..       .|                                ...|++
T Consensus       246 ~~~~~------~~~~~~~~p~~~~~~-~-~~~~-------~g--------------------------------~~~~~~  278 (386)
T TIGR02372       246 GLREA------PDDPFRLLPDLACFA-D-TLSS-------AG--------------------------------LARRLD  278 (386)
T ss_pred             ccccC------CCCCcccCCCccccC-C-CccC-------CC--------------------------------ccceee
Confidence            43221      123456666654432 1 1000       00                                001579


Q ss_pred             ccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhH
Q 010114          384 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK  463 (518)
Q Consensus       384 TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~  463 (518)
                      |||+++||++|+|++.||.||+||++|++|+|.+||++|. +||+|.+++|+.     .| +.+.++|++.++.  +.+.
T Consensus       279 tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~-~~p~V~~~~v~~-----~g-~~~~a~vv~~~~~--~~~~  349 (386)
T TIGR02372       279 LQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILE-RNPRVRAAAVRL-----DG-RRLKAFIVVAEDA--DEAE  349 (386)
T ss_pred             cCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHH-cCCCceEEEEEc-----CC-ceEEEEEEECCCC--ChHH
Confidence            9999999999999999999999999999999999999998 999999998863     24 6788999887643  3344


Q ss_pred             HHHHHHHHHHhccCCccccceEEEecCCCCCCCchhH
Q 010114          464 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL  500 (518)
Q Consensus       464 l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~  500 (518)
                      +.+.+++++.+++++|++|..+.+++++|+|++||++
T Consensus       350 ~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       350 LEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             HHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence            5567777788899999999999999999999999984

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=7.8e-36  Score=316.01  Aligned_cols=382  Identities=22%  Similarity=0.232  Sum_probs=301.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+|+.++++++|+.|.+. +.+++.|+++++.++++++.++|++++|+.++|+++.++.+.+..+++.++++.+++..
T Consensus       253 lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~  332 (642)
T COG1020         253 LTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQA  332 (642)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecc
Confidence            69999999999999999999 99999999999889999999999999999999999999999999999999999999984


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .........+.                              +..........   ..... .....+++.++++||||||
T Consensus       333 ~~~~~~~~~~~------------------------------~~~~~~~~~~~---~~~~~-~~~~~~~~~ayiiytsgst  378 (642)
T COG1020         333 HLRVDDVGLPG------------------------------LALDDALSEIP---DTDPI-PQALLGDALAYIIYTSGST  378 (642)
T ss_pred             ccccccccCCc------------------------------cccccccccCC---ccCcc-cccCCCCCeEEEEEccCCC
Confidence            32100000000                              00001000000   00000 2233458999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCC--ChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP--LERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~--~~~~~~~~i~~~~~  237 (518)
                      |.||||..+|.++.....+....+.+...|+++...++.++.+...++.++..|+++++.+...  ++..+.+.+.++++
T Consensus       379 g~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~v  458 (642)
T COG1020         379 GQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGI  458 (642)
T ss_pred             CCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCC
Confidence            9999999999999987777666788999999999999999988888999999999999987643  57788899999999


Q ss_pred             cEEEechHHHHHHHhcccC--CCCCccchhhhhccCCCCCchhhhHhhhccc-cCceeccccccccceeEeecCCCCCcc
Q 010114          238 TVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQA  314 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~~~~~~~~~  314 (518)
                      |.+..+|.++..++.....  .......+|.+++|||.++......+..... ...+.+.||.||+..............
T Consensus       459 t~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~  538 (642)
T COG1020         459 TVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELE  538 (642)
T ss_pred             EEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccC
Confidence            9999999999999876321  1222335999999999999999887766544 467999999999655433222222111


Q ss_pred             -cCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          315 -FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       315 -~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                       ...+|.|+++.+++|+|+.++++|.|.  .||+++ +.++.-+  +......+...|...      ++|+|||++++.+
T Consensus       539 ~~~piG~p~~n~~~~ild~~~~~~p~gv--~gel~i~g~~~a~g--y~~~p~lt~~~f~~~------~~y~tgD~~r~~~  608 (642)
T COG1020         539 SRVPIGRPVANTQLYILDQGLRPLPLGV--PGELYIAGLGLALG--YLNRPDLTAERFIAL------RLYRTGDLARPLA  608 (642)
T ss_pred             CCCCcceeeCCCeEEEECCCCCcCCCCC--CeeeEECCcchhhh--hcCChhhhHHHhhhc------cCccCCCeeeECC
Confidence             468999999999999999999999999  499999 4444443  334444444444332      3899999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCc
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE  427 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~  427 (518)
                      ||.+.++||.|+++|++|++|.+.+||..+. ++|
T Consensus       609 dg~~e~lgr~D~qvki~g~Riel~eie~~l~-~~~  642 (642)
T COG1020         609 DGALEYLGRKDSQVKIRGFRIELGEIEAALA-EQP  642 (642)
T ss_pred             CCeEEEeccccceeEeceEecCcHHHHHHHh-cCC
Confidence            9999999999999999999999999999996 664

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=2.1e-36  Score=303.13  Aligned_cols=322  Identities=20%  Similarity=0.184  Sum_probs=236.4

Q ss_pred             CCCCEEEEEeccCCCCCCceEEeccchhHHHhhh---ccccccCCCCcEEEeecCchhhhhhH-HHHHhhhcCcEEEEec
Q 010114          145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQ  220 (518)
Q Consensus       145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~---~~~~~~~~~~d~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~~  220 (518)
                      +.++++.+++||||||.||+|.++|.++..+...   ....+++.++|++++..+..+..+.. ..+.++..|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            4467888999999999999999999988665332   23345788999998877665443333 3566788899988776


Q ss_pred             CCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCC--ccchhhhhccCCCCCchhhhHhhhccccCceecccccc
Q 010114          221 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT  298 (518)
Q Consensus       221 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~t  298 (518)
                      . ..+..+++.|+++++|+++++|+++..|++.....+.+  ..++|.++++||++++++.+.+.+.+ ++++++.||+|
T Consensus       153 ~-~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~t  230 (422)
T TIGR02155       153 G-GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLS  230 (422)
T ss_pred             C-CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccch
Confidence            4 45688999999999999999999999998765444333  35899999999999999999988776 68899999999


Q ss_pred             ccce--eEeecCCCCCcccCCCCccc--ccccEEEEC-CCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCC
Q 010114          299 ELSS--AYIQGSLLQPQAFGAFSTAT--MTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM  373 (518)
Q Consensus       299 E~~~--~~~~~~~~~~~~~~~~g~~~--~~~~~~i~~-~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~  373 (518)
                      |+++  +...+...      ..|.++  ++..++|+| ++|++++.|+  .|||+++.....             .+   
T Consensus       231 E~~~~~~~~~~~~~------~~g~~~~~~~~~~eivd~~~g~~v~~Ge--~Gelvvt~~~~~-------------~~---  286 (422)
T TIGR02155       231 EVIGPGVAMECVET------QDGLHIWEDHFYPEIIDPHTGEVLPDGE--EGELVFTTLTKE-------------AL---  286 (422)
T ss_pred             hhcCCceeeccccc------CCCceEecCeeEEEEECCCCCCCCCCCC--eeEEEEecCCcc-------------cc---
Confidence            9852  22222111      112222  356678999 6899999999  699998431110             01   


Q ss_pred             CCCCCceeccccceEEEecC-c-----eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEE
Q 010114          374 PMYKGMCLRRHGDIIKRTVG-G-----YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL  447 (518)
Q Consensus       374 ~~~~~~~~~~TGD~~~~~~~-g-----~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~  447 (518)
                      +    ..||+|||+++++++ |     .+++.||.+|+++++|.+|+|.+||.+|. .||+|...+.+........ +.+
T Consensus       287 p----~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~-~~~~v~~~~q~~~~~~~~~-~~~  360 (422)
T TIGR02155       287 P----VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVIL-KMDELSPHYQLELTRNGHM-DEL  360 (422)
T ss_pred             c----eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHH-hCcCcCCCEEEEEEcCCCc-cEE
Confidence            1    248999999999876 4     46899999999999999999999999997 8999985554544443333 567


Q ss_pred             EEEEEecCCCC-----CChhHHHHHHHHHHHhccCCccccceEEEe--cCCCCCCCchhHHH
Q 010114          448 VIFVVLKKGFT-----SQPDKLKMIFSKAIQSKLNPLFKVSLVKVV--PEFPRTASNKLLRR  502 (518)
Q Consensus       448 ~~~v~~~~~~~-----~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v--~~~P~t~~GKv~R~  502 (518)
                      .+.|+..++..     .+.+.+.+.+++.+.+.+..+.   .|.++  ++||+|+ ||+.|.
T Consensus       361 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~v~~~~~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       361 TLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSM---DVHLVEPGSLPRSE-GKARRV  418 (422)
T ss_pred             EEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEE---EEEEECCCCccCCC-CCceEE
Confidence            77777664321     1233456677777777776553   35554  6999988 998763

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-32  Score=286.06  Aligned_cols=471  Identities=17%  Similarity=0.116  Sum_probs=308.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchh----HHH---HHHHHHhcCc
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA----ARE---IATRLRVSKA   72 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~----~~~---i~~~l~~~~~   72 (518)
                      +||++.+..++.+++.|-.. .-.|+.|++++..+.++++..+|++++|..+++++|.++    ++.   +++.+.....
T Consensus        70 ~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~  149 (1032)
T KOG1178|consen   70 FTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVEL  149 (1032)
T ss_pred             hhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccc
Confidence            48899999999999999988 889999999999999999999999999999999999998    332   2222222211


Q ss_pred             eEEEechhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           73 KGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        73 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      ..+.-.          +...........+..+.            ...-.|..+...      ...........|+.+.+
T Consensus       150 ~i~~~l----------~i~~~~~~~~~~~~sv~------------~~~~~f~~~~~~------~~~r~~~~~~~ds~~~l  201 (1032)
T KOG1178|consen  150 EIVRRL----------NIIDILLNSLFPKLSVE------------TIADSFQMVLHN------EDTREIRVGGNDSTALL  201 (1032)
T ss_pred             eehhhh----------hhHHHHhhccccccchh------------hccchhhhhhcc------CCCcceeeecccccceE
Confidence            111110          01110000000000000            000011111111      11122223456788999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCC---ChhHHH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP---LERSFG  229 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~---~~~~~~  229 (518)
                      .||||+||.||+|..+|..+.....+++..+..+.++.+-.....+.+.....+.+++++....++.+...   .+..+.
T Consensus       202 ~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~  281 (1032)
T KOG1178|consen  202 SFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLA  281 (1032)
T ss_pred             eecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHH
Confidence            99999999999999999999999999998888888888633444444444445555555555544443322   268999


Q ss_pred             HHHHHcCccEEEechHHHHHHHhcccC-------------CCCCccchhhhhccCCCCCchhhhHhhhccccCceecccc
Q 010114          230 KFVQDAGVTVLGTVPSLVKAWRNTNCL-------------EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG  296 (518)
Q Consensus       230 ~~i~~~~~t~l~~~P~~~~~l~~~~~~-------------~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg  296 (518)
                      +++++++++..+.+|++.+.++.....             .....+.||....+||++..++...+...+...-...-|+
T Consensus       282 ~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~  361 (1032)
T KOG1178|consen  282 STLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYL  361 (1032)
T ss_pred             HHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeeccc
Confidence            999999999999999998887665432             1122347888999999988887774443332222333477


Q ss_pred             ccccceeEeecCCCCCc---ccCCCCccccc-------ccEEEECCCCCCCCCCCCeeeeeeecccccCCcccccccccc
Q 010114          297 GTELSSAYIQGSLLQPQ---AFGAFSTATMT-------AGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE  366 (518)
Q Consensus       297 ~tE~~~~~~~~~~~~~~---~~~~~g~~~~~-------~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~  366 (518)
                      .++.........-....   ....+..+..+       .........|.+.+.++   |..+++...+............
T Consensus       362 s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~l~~~~~~~~~~~~g~~~~  438 (1032)
T KOG1178|consen  362 STDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGV---GKGCLGAEQNLSSWVVDGYSTP  438 (1032)
T ss_pred             CCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCCcc---cceeecccccccceeeccccch
Confidence            77765543221111100   01111111111       22333334444444333   3334422222111111110111


Q ss_pred             ceeeeCC--CCCCCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCc
Q 010114          367 EVYFRGM--PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP  444 (518)
Q Consensus       367 ~~~~~~~--~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~  444 (518)
                      +......  .....+++|+|||.|+..++|.+.++||.|++||.+|.++.+.+|+.++. .||.|.++......+...+ 
T Consensus       439 ~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~-~~p~v~~~itl~~~~~~~~-  516 (1032)
T KOG1178|consen  439 ENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVE-VHPDVKEAITLARENSTVG-  516 (1032)
T ss_pred             hhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhc-cCcchhhhheeeeeccccC-
Confidence            1111111  11235568999999999999999999999999999999999999999998 8899999999999888877 


Q ss_pred             cEEEEEEEecCCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHH
Q 010114          445 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       445 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~  507 (518)
                      +.+.+||+...+...+   ....|+.++.++|+.|++|..++.++++|+|++||||+++|.+.
T Consensus       517 ~~l~aFvv~~~~~~~~---~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~  576 (1032)
T KOG1178|consen  517 QTLLAFVVERGGSKSV---LIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLEY  576 (1032)
T ss_pred             ceEEEEEeccCCCCch---hHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhhh
Confidence            8999999988754333   36778888999999999999999999999999999999999983

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.98  E-value=2.4e-29  Score=253.32  Aligned_cols=483  Identities=15%  Similarity=0.133  Sum_probs=321.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchh------HHHHHHHHHhcCc
Q 010114            1 MTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA------AREIATRLRVSKA   72 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~------~~~i~~~l~~~~~   72 (518)
                      +||++|..+|.+++.+|...  +++||+|++++++++|++.+++||+.+|++++|+.|.-.      -..+..+++.+++
T Consensus       802 ~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv  881 (1363)
T KOG3628|consen  802 LTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKV  881 (1363)
T ss_pred             eEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhh
Confidence            59999999999999999988  999999999999999999999999999999999987532      2467899999999


Q ss_pred             eEEEechhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           73 KGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        73 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      +.|+++.......+......+....+-......++           -..++.........  .....++....++.+|++
T Consensus       882 ~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~-----------~~~t~~k~~~~~~k--~~~~~~~g~~~k~~~a~v  948 (1363)
T KOG3628|consen  882 AAILVDQKVLKLLRSREASAHVDQSAIPLILVLPK-----------LPETIRKRKKNIKK--LNTPTPPGLNNKETPALV  948 (1363)
T ss_pred             heEEecHHHHHHHhhhhHHHHhhhhcchhhhcccc-----------cchhhhhhhhhhhc--cCCCCCccccCCCceEEE
Confidence            99999986432222111111111111111111110           00001111111110  111233444567889999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCC---ChhHH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP---LERSF  228 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~---~~~~~  228 (518)
                      -+.--++|.--++.+||.++++.+....+...+.++..++.+.+.+...|+.. ++...|+|.+.+++++..   ++..+
T Consensus       949 ~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLl 1028 (1363)
T KOG3628|consen  949 WFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLL 1028 (1363)
T ss_pred             EEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHH
Confidence            99888999999999999999999998888888899988998888888888866 888999999988887632   57889


Q ss_pred             HHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhh------hccCCCCCchhhhHhhhccc---------------
Q 010114          229 GKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF------ASTGETSNVDDDLWLSSKAW---------------  287 (518)
Q Consensus       229 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i------~~~Ge~l~~~~~~~~~~~~~---------------  287 (518)
                      ++.|++||+.-++.+-..+....+....+..+++....-      +-.-|+....+..-+.+.+-               
T Consensus      1029 l~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~ 1108 (1363)
T KOG3628|consen 1029 LQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSS 1108 (1363)
T ss_pred             HHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccc
Confidence            999999999999998888887766543333333222211      11222222222221111110               


Q ss_pred             --cC-ceeccccccccceeEeecCCCCCccc-------------CCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-
Q 010114          288 --YN-AIIESCGGTELSSAYIQGSLLQPQAF-------------GAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-  349 (518)
Q Consensus       288 --~~-~i~~~yg~tE~~~~~~~~~~~~~~~~-------------~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-  349 (518)
                        +. ...++|...|-.....-......+..             -..|...+++++.|++ ++..++..|+  .||+|+ 
T Consensus      1109 r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge--~GEIW~~ 1186 (1363)
T KOG3628|consen 1109 RVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGE--LGEIWVN 1186 (1363)
T ss_pred             cCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCC--cceEEec
Confidence              00 13455555554333221111111111             1226667889999999 6777899998  799999 


Q ss_pred             cccccCCccccccccccceeeeC--CCCCCCceeccccceEEEe------cC----ceEEEeeccCCeeeeCceecchhH
Q 010114          350 FPLYLGASDRLLNADHEEVYFRG--MPMYKGMCLRRHGDIIKRT------VG----GYIIVQGRADDTMNLGGIKTSSVE  417 (518)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~TGD~~~~~------~~----g~l~~~gR~~d~i~~~G~~v~~~~  417 (518)
                      +..-..++....++...+.+-..  .....+..|-||||+|+..      .+    .-||++|-.++.+.++|.+.+|.+
T Consensus      1187 S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~D 1266 (1363)
T KOG3628|consen 1187 SAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSD 1266 (1363)
T ss_pred             cccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcch
Confidence            33222211111111222211111  1223467799999999974      22    258999999999999999999999


Q ss_pred             HHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccCCcccc-ceEEEec--CCCCC
Q 010114          418 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVP--EFPRT  494 (518)
Q Consensus       418 iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p-~~i~~v~--~~P~t  494 (518)
                      ||+.+.+.||.|.+|+|+.+.      ..+++.+....  +   +++.+.+--.++..|..|.+. +.+.||+  .+|++
T Consensus      1267 IE~TV~~vH~~I~~cavF~~~------glvVvviE~~g--q---~~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~ 1335 (1363)
T KOG3628|consen 1267 IETTVERVHPSIGGCAVFQAT------GLVVVVIECHG--Q---QELADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRN 1335 (1363)
T ss_pred             HHHHHHHhcccccceeeEeeC------CeEEEEEEecC--c---hhHhhhhHHHHHHHHhhcceEEEEEEEecCCccccC
Confidence            999999889999999999875      34555555543  2   333333333345667777776 7888887  69999


Q ss_pred             CCchhHHHHHHHHHh
Q 010114          495 ASNKLLRRVLRDQIK  509 (518)
Q Consensus       495 ~~GKv~R~~l~~~~~  509 (518)
                      +.|..+|..+++.+.
T Consensus      1336 ~~gEK~R~~I~~~w~ 1350 (1363)
T KOG3628|consen 1336 SRGEKQRAHILDSWL 1350 (1363)
T ss_pred             CchhhHHHHHHHHHH
Confidence            999999999888654

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.97  E-value=5.9e-30  Score=256.46  Aligned_cols=328  Identities=15%  Similarity=0.104  Sum_probs=223.2

Q ss_pred             CCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhccc---cccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEe
Q 010114          144 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALY  219 (518)
Q Consensus       144 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~  219 (518)
                      .+.++++.+++||||||.||+|.++|.++..+......   ..++.++|+++...+..+..+... .++++..|++++..
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~  162 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE  162 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence            35578899999999999999999999998766543332   347889999999988887766544 56677788876543


Q ss_pred             cCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCC--ccchhhhhccCCCCCchhhhHhhhccccCceeccccc
Q 010114          220 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG  297 (518)
Q Consensus       220 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~  297 (518)
                      . .  ....++.|+++++|.+.++|+.+..+++.....+.+  .+++|.++++||++++++.+++.+.+ ++++++.||+
T Consensus       163 ~-~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~  238 (445)
T TIGR03335       163 G-K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGS  238 (445)
T ss_pred             C-c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCCh
Confidence            3 2  245689999999999999999988887654433332  46899999999999999988888766 6899999999


Q ss_pred             cccceeEeecCCCCCcccCCCCcccccccEEEECCC-CCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCC
Q 010114          298 TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMY  376 (518)
Q Consensus       298 tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~-g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (518)
                      ||++. ...+...     .....+.+++.++|+|++ +.+++.|+  .|||+++......      .......++     
T Consensus       239 TE~~~-~~~c~~~-----~g~h~~~d~~~vEIvDp~~~~~vp~Ge--~GELvvT~L~~~~------~r~~~PliR-----  299 (445)
T TIGR03335       239 TEGTM-CGECQAV-----AGLHVPEDLVHLDVYDPRHQRFLPDGE--CGRIVLTTLLKPG------ERCGSLLIN-----  299 (445)
T ss_pred             hhhhh-eEEecCC-----CCccccCCceEEEEEcCCCCCCCcCCC--ceEEEEEecCCCC------ccCCceEEE-----
Confidence            99863 2333221     112234456789999965 56789999  6999994332110      000011333     


Q ss_pred             CCceeccccceEEEec-C----c----eEEEeeccCCeeeeCceecchhHHHHHHhhcC---cccce-eeEEEeCCCCCC
Q 010114          377 KGMCLRRHGDIIKRTV-G----G----YIIVQGRADDTMNLGGIKTSSVEIERVCDQAD---ESILE-TAAISVSPAGGG  443 (518)
Q Consensus       377 ~~~~~~~TGD~~~~~~-~----g----~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~---~~v~~-~~vv~~~~~~~g  443 (518)
                           |+|||++++.. +    |    .+...||.||+++++|.+++|.+||++|. .+   +++.. ..++...+ ..+
T Consensus       300 -----YrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~-~~~~~~~~~~~~~~~~~~~-~~~  372 (445)
T TIGR03335       300 -----YDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVF-QRENMDSLTGEYEAFLYGE-EEG  372 (445)
T ss_pred             -----eecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHh-ccCCCCCCCccEEEEEecC-CCC
Confidence                 89999999732 2    2    24456999999999999999999999998 74   55433 33443332 233


Q ss_pred             ccEEEEEEEecCCCCCChhHHHHHHHHH----H---HhccCCccccceEEEec--CCCCC-CCchhHH
Q 010114          444 PEVLVIFVVLKKGFTSQPDKLKMIFSKA----I---QSKLNPLFKVSLVKVVP--EFPRT-ASNKLLR  501 (518)
Q Consensus       444 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~----~---~~~l~~~~~p~~i~~v~--~~P~t-~~GKv~R  501 (518)
                      ...+.+.|...+....+.+++.+.+.+.    +   ...+....+...+.+++  .+||+ ..||..|
T Consensus       373 ~~~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r  440 (445)
T TIGR03335       373 EITLRVSLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR  440 (445)
T ss_pred             CceEEEEEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence            2355555666554334445555555544    1   11111222234555554  79998 4699766

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.95  E-value=1.7e-25  Score=212.55  Aligned_cols=322  Identities=23%  Similarity=0.215  Sum_probs=229.7

Q ss_pred             CCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhccc---cccCCCCcEEEeecCch-hhhhhHHHHHhhhcCcEEEEe
Q 010114          144 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLALY  219 (518)
Q Consensus       144 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~-~~~~~~~~~~~l~~G~~~~~~  219 (518)
                      .+.++...|--||||||+|+-+.++...+-.+......   ..+...+|++..+.... +..|+..-+++--.|++++-.
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~  166 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI  166 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence            34466666888999999999999999887666554444   35678888876655533 222333355555577777665


Q ss_pred             cCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCC--CccchhhhhccCCCCCchhhhHhhhccccCceeccccc
Q 010114          220 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG  297 (518)
Q Consensus       220 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~--~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~  297 (518)
                      ++ ...+..+++|+++++|++.++|+.+..|.+..+..+.  .-.++|.+++|+|++++++++.+.+.+ ++..++.||+
T Consensus       167 ~~-g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGl  244 (438)
T COG1541         167 SG-GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGL  244 (438)
T ss_pred             CC-ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeecccc
Confidence            53 3568889999999999999999999999998877752  234899999999999999999999887 7889999999


Q ss_pred             ccccee-EeecCCCCCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCC
Q 010114          298 TELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM  375 (518)
Q Consensus       298 tE~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (518)
                      ||..+. ...|....     .....-+...++|+| ++|++++.|+  .||++++...-.          .....+    
T Consensus       245 tE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~dP~t~e~l~dge--~GelV~T~L~~~----------~~PlIR----  303 (438)
T COG1541         245 TEGFGPGAGECTERN-----GLHIWEDHFIFEIVDPETGEQLPDGE--RGELVITTLTKE----------GMPLIR----  303 (438)
T ss_pred             ccccCCccccccccc-----CCCcchhhceeeeecCCcCccCCCCC--eeEEEEEecccc----------CcceEE----
Confidence            998665 34443332     122344567888999 8999999999  699998432211          111333    


Q ss_pred             CCCceeccccceEEEecC----ce-----EEEeeccCCeeeeCceecchhHHHHHHhhcCcccc-eeeEEEeCCCCCCcc
Q 010114          376 YKGMCLRRHGDIIKRTVG----GY-----IIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAGGGPE  445 (518)
Q Consensus       376 ~~~~~~~~TGD~~~~~~~----g~-----l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~-~~~vv~~~~~~~g~~  445 (518)
                            |+|||+++...+    |.     ..+.||.+|+++++|.+|+|.+||++|. +.+.+. +..++... .... .
T Consensus       304 ------YrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~-~~~~~~~~yqi~~~~-~~~~-d  374 (438)
T COG1541         304 ------YRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLL-QIPEVTPHYQIILTR-NGGL-D  374 (438)
T ss_pred             ------EEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHh-cccCCCceEEEEEec-CCCC-c
Confidence                  899999999763    32     3589999999999999999999999998 899888 66766665 3333 5


Q ss_pred             EEEEEEEecCCCCC--ChhHHHHHHHHHHHhccCCccccceEEEe--cCCCCCCCchhHH
Q 010114          446 VLVIFVVLKKGFTS--QPDKLKMIFSKAIQSKLNPLFKVSLVKVV--PEFPRTASNKLLR  501 (518)
Q Consensus       446 ~~~~~v~~~~~~~~--~~~~l~~~~~~~~~~~l~~~~~p~~i~~v--~~~P~t~~GKv~R  501 (518)
                      .+.+-|++++....  +...+.+.+.+.+.+.+.   ....|.++  .++|||.. |..|
T Consensus       375 ~L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~v~~v~~g~l~r~~~-K~kr  430 (438)
T COG1541         375 ELTVRVELENEAEELEDERRLAKKLIKNIKSELG---VRVEVELVEPGELPRTEG-KAKR  430 (438)
T ss_pred             eEEEEEEecCcccchHHHHHHHHHHHHHHHhhcC---CceEEEEEeccceecccC-ceeE
Confidence            67777888764211  112222344444433332   22444444  58999965 5433

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.89  E-value=4.2e-22  Score=180.28  Aligned_cols=195  Identities=17%  Similarity=0.137  Sum_probs=142.8

Q ss_pred             CCHHHHHHHHHHHHHHHhh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~-~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+|+.++++++|+.|++ . +++||+|+++++|+++++++++||+++|++++|++             .+++|+++++
T Consensus        28 ~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~   94 (227)
T TIGR03089        28 LSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAG-------------DPDADVVVTG   94 (227)
T ss_pred             EEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeC
Confidence            6999999999999999997 7 99999999999999999999999999999999995             7899999998


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccc--cccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEecc
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPA--IGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS  156 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  156 (518)
                      ++......           .......+..  ...........+..++.+.+......    ..++....++|++.++|||
T Consensus        95 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~a~l~yTs  159 (227)
T TIGR03089        95 PDRLAAAA-----------GSGEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQ----FAPYEPPDATAPALVAGGG  159 (227)
T ss_pred             cchhhhcc-----------cCCceEEEeccccccCCCCCCCCcccchhhhhhccCCC----CCCCCCCCCCcceeeeccc
Confidence            86543211           0111111100  00000001112223555544322110    1111023458999999999


Q ss_pred             CCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHc
Q 010114          157 GTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDA  235 (518)
Q Consensus       157 GtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~  235 (518)
                      |+         +|.+++.+.    ...+++++|+++ ..|++|.+|+.. ++.+++.|+++++.+ .+++..+++.|+++
T Consensus       160 g~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~-rFd~~~~l~~i~~~  224 (227)
T TIGR03089       160 EW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVT-HPDPARLDQIAETE  224 (227)
T ss_pred             cc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEec-CCCHHHHHHHHHhh
Confidence            86         555555544    456789999999 999999999965 999999999999986 78999999999999


Q ss_pred             Ccc
Q 010114          236 GVT  238 (518)
Q Consensus       236 ~~t  238 (518)
                      |+|
T Consensus       225 ~vT  227 (227)
T TIGR03089       225 RVT  227 (227)
T ss_pred             cCC
Confidence            987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.87  E-value=7.3e-22  Score=188.69  Aligned_cols=122  Identities=16%  Similarity=0.182  Sum_probs=106.8

Q ss_pred             CCceeccccceEEE-ecCceEEEeeccCCeeeeCc---eecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEE
Q 010114          377 KGMCLRRHGDIIKR-TVGGYIIVQGRADDTMNLGG---IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV  452 (518)
Q Consensus       377 ~~~~~~~TGD~~~~-~~~g~l~~~gR~~d~i~~~G---~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~  452 (518)
                      ..+|||+|||+|++ |+||+|++.||.+     +|   ++|+|. ||++|. +||+|.+++|++++++..| +.++|||+
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~-~hp~V~eaaVvgvpd~~~g-e~v~A~Vv  277 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALK-SDPAVSDVAIALFSLPAKG-VGLYAFVE  277 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHH-hCCCccEEEEEEEEcCCCC-eEEEEEEE
Confidence            46689999999998 6999999999987     78   799999 999997 9999999999999999999 99999999


Q ss_pred             ecCCCCCChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          453 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       453 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      +..  ..+.+++.++    +.++|++ ++|..+.++++||+|++||++|+.|++++.+..+
T Consensus       278 ~~~--~~~~~el~~~----l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~~~  331 (365)
T PRK09188        278 AEL--PADEKSLRAR----LAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQID  331 (365)
T ss_pred             ECC--CCCHHHHHHH----HHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcccc
Confidence            864  3344555555    6678899 9999999999999999999999999998765544

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.77  E-value=6e-17  Score=158.78  Aligned_cols=245  Identities=17%  Similarity=0.068  Sum_probs=159.3

Q ss_pred             EEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeec-CchhhhhhHHHHHhhhcC-cEEEEecCCC
Q 010114          149 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPT-NLGWVMGPVILFSSFLNG-ATLALYQGSP  223 (518)
Q Consensus       149 ~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~-pl~~~~~~~~~~~~l~~G-~~~~~~~~~~  223 (518)
                      -..+..||||||.|-.+..+......+.....   ...++..++++.... .-.+.+      ..+.+. ..+..++-..
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly------~~~~~~~~~~~~~~l~~  174 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLY------QSVNNRWISLDFFDLLA  174 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHH------HHHHhccceeeecCCCc
Confidence            34677899999999999999876544332211   122445555554432 111222      212121 1133333334


Q ss_pred             ChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceecccccccccee
Q 010114          224 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA  303 (518)
Q Consensus       224 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~  303 (518)
                      ..+..++.|++++|+++.++|+.+..|++..+..+.+ .++|.++++||.++++..+.+.+.+ ++++++.||+|| |.+
T Consensus       175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~l  251 (430)
T TIGR02304       175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GFL  251 (430)
T ss_pred             CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hhe
Confidence            5688999999999999999999999999876555544 4789999999999999888888777 689999999999 665


Q ss_pred             EeecCCCCCcccCCCCcccccccEE--EECCCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCcee
Q 010114          304 YIQGSLLQPQAFGAFSTATMTAGLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCL  381 (518)
Q Consensus       304 ~~~~~~~~~~~~~~~g~~~~~~~~~--i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (518)
                      .+.|...      .+..-...+-++  ++|+++.         +..+++....          .....++          
T Consensus       252 a~eC~~g------~lHl~ed~~~vE~~ivD~~~~---------~~~ViT~L~n----------~~~PlIR----------  296 (430)
T TIGR02304       252 ASTCRCG------TLHLNEDLVHIEKQYLDEHKR---------FVPIITDFTR----------TTQPIVR----------  296 (430)
T ss_pred             EEecCCC------CEEEccccEEEEeeEECCCCc---------eEEEEecCCC----------ccceEEe----------
Confidence            5555321      111122233344  7786553         2223322111          0111333          


Q ss_pred             ccccceEEEecC----ce----E-EEeeccCCeeee---Cc--eecchhHHHHHHhhcCcccceeeEEEe
Q 010114          382 RRHGDIIKRTVG----GY----I-IVQGRADDTMNL---GG--IKTSSVEIERVCDQADESILETAAISV  437 (518)
Q Consensus       382 ~~TGD~~~~~~~----g~----l-~~~gR~~d~i~~---~G--~~v~~~~iE~~l~~~~~~v~~~~vv~~  437 (518)
                      |+|||++.+.++    |.    + .+.||.+|++++   +|  ..++|..+++++....++|.+..++..
T Consensus       297 YrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~  366 (430)
T TIGR02304       297 YRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQT  366 (430)
T ss_pred             eeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEc
Confidence            899999988543    32    3 388999999985   44  455999999885546789999888753

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.63  E-value=4.2e-14  Score=144.40  Aligned_cols=470  Identities=13%  Similarity=0.091  Sum_probs=278.8

Q ss_pred             CCHHHHHHHHHHHHHHHhh-c-cCCCCEEEEEcCCC--HHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEE
Q 010114            1 MTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF   76 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~-~-v~~g~~V~i~~~~~--~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii   76 (518)
                      +||..+..++.++|+.-+. . +.++|+|.++...+  +|+++..++|...|..++|+++..+.+++...++....++++
T Consensus       125 ~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l  204 (1363)
T KOG3628|consen  125 ITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVAL  204 (1363)
T ss_pred             eeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEe
Confidence            6899999999999995444 4 99999999998877  799999999999999999999999999999999999999999


Q ss_pred             echhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEecc
Q 010114           77 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS  156 (518)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  156 (518)
                      +..+....          ..... ..         .   ..+..+.|.....-...+-....-.+. .... ..+|-||+
T Consensus       205 ~t~a~~r~----------~~~~~-~~---------~---s~~k~v~~w~t~~~k~~~~~~k~~~P~-~~~~-~~~i~~t~  259 (1363)
T KOG3628|consen  205 TTEAGERA----------FINDN-SP---------V---SLAKAVAWWKTNDFKGNYTKDKIKKPR-MQLP-YGYIEFTR  259 (1363)
T ss_pred             ehhhhHHH----------hhhcc-Cc---------c---cHHHHHHhhhcccccceeehhhccCCc-eeee-eEEEEEec
Confidence            88754311          11000 00         0   000111111100000000000001111 1112 67899999


Q ss_pred             CCCCCCceEEeccchhHHHhhhcc--------------------ccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcE
Q 010114          157 GTTGEPKAIPWTQLSSIRCTAEGW--------------------AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGAT  215 (518)
Q Consensus       157 GtTG~pK~v~~s~~~~~~~~~~~~--------------------~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~  215 (518)
                      +++|.--|++++|. ++...+...                    ..++...+++++......-..|++. ++.++++|.|
T Consensus       260 s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c  338 (1363)
T KOG3628|consen  260 SPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYC  338 (1363)
T ss_pred             cchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCce
Confidence            99999999999997 544332211                    1123456677888888888888877 9999999999


Q ss_pred             EEEecCC--CChhHHHHHHHHcCccEEEechHHHHHHHhcc-----------cCCCCCccchhhhhccCCCCCchhhhH-
Q 010114          216 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN-----------CLEGLDWTKIRSFASTGETSNVDDDLW-  281 (518)
Q Consensus       216 ~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~-----------~~~~~~l~~lr~i~~~Ge~l~~~~~~~-  281 (518)
                      .+..+..  ..+..+...+.+++++++..--..++......           +..-.+++++|.+....+.+..+.... 
T Consensus       339 ~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~iv  418 (1363)
T KOG3628|consen  339 TIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIV  418 (1363)
T ss_pred             eecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeecchHHHHHH
Confidence            9999864  35678999999999999877654444432221           112256889999999998888774332 


Q ss_pred             ---hhhccccCc----eeccccc-------------cccceeEeecCCCCCc----------------------------
Q 010114          282 ---LSSKAWYNA----IIESCGG-------------TELSSAYIQGSLLQPQ----------------------------  313 (518)
Q Consensus       282 ---~~~~~~~~~----i~~~yg~-------------tE~~~~~~~~~~~~~~----------------------------  313 (518)
                         |.+..+...    ++...-.             +|.+....-.+.....                            
T Consensus       419 s~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~  498 (1363)
T KOG3628|consen  419 SDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISS  498 (1363)
T ss_pred             HHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhh
Confidence               222111111    1222222             3333221111110000                            


Q ss_pred             -ccCCCCcccc-cccEEEEC-CCCCCCCCCCCeeeeeeecccccCCccccccccccceee-----eCCCCCCCceecccc
Q 010114          314 -AFGAFSTATM-TAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYF-----RGMPMYKGMCLRRHG  385 (518)
Q Consensus       314 -~~~~~g~~~~-~~~~~i~~-~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~TG  385 (518)
                       ..-.+|.-.| ...+.|++ +....+..++  +|||||..+..++.++..+..+.+.+-     ..........+.|||
T Consensus       499 ~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~e--VGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtG  576 (1363)
T KOG3628|consen  499 LSVKDVLCIMPGDATLAVVNPDTNQLCKTDE--VGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTG  576 (1363)
T ss_pred             cCccccceecccceEEEEeCCCcccccccCc--ceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhc
Confidence             0111122222 24455666 5667888898  799999666665544444443333322     223334556688999


Q ss_pred             ceEEEecCceEEEeeccCCeee-eCceecchhHHHH---------HHhhcCcccceeeEEEeCCCCCCccEEEEEEEecC
Q 010114          386 DIIKRTVGGYIIVQGRADDTMN-LGGIKTSSVEIER---------VCDQADESILETAAISVSPAGGGPEVLVIFVVLKK  455 (518)
Q Consensus       386 D~~~~~~~g~l~~~gR~~d~i~-~~G~~v~~~~iE~---------~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~  455 (518)
                      =+|++. +|.++++|-.+|.+. ..|..++..+|-.         .+.+..+.|-++.++-  +     ++..+.++=++
T Consensus       577 LlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~--~-----E~~~Vv~~esP  648 (1363)
T KOG3628|consen  577 LLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE--D-----EHIVVVVLESP  648 (1363)
T ss_pred             ceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee--c-----ceEEEEEEeCc
Confidence            999995 555666665566655 6777766544432         2222445566666553  1     44443333233


Q ss_pred             CC-CCChhHHHHHHHHHHHhccCCcccc--ceEEEe--cCCCCCCCchhHHHHHHHHHhc
Q 010114          456 GF-TSQPDKLKMIFSKAIQSKLNPLFKV--SLVKVV--PEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       456 ~~-~~~~~~l~~~~~~~~~~~l~~~~~p--~~i~~v--~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      +. +.+.-.+...+.+    .+...++.  --+.++  +.+|||+-|-+.-.++++.|.+
T Consensus       649 ~a~e~~~~q~~~~v~q----~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~  704 (1363)
T KOG3628|consen  649 DATEENSFQWMSRVFQ----ALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLE  704 (1363)
T ss_pred             chhhhhhhhHHHHHHH----HHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHc
Confidence            32 1111122222222    22223333  334444  5899999888999999998865

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.29  E-value=5.5e-12  Score=92.06  Aligned_cols=70  Identities=34%  Similarity=0.428  Sum_probs=57.7

Q ss_pred             HHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccCCcccc--ceEEEecC-CCC
Q 010114          417 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--SLVKVVPE-FPR  493 (518)
Q Consensus       417 ~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p--~~i~~v~~-~P~  493 (518)
                      |||+++. +||+|.+++|++.+++..| +.+++|+++      +.    +.++++++++|++|+.|  ..++.+++ ||+
T Consensus         1 EIE~~l~-~~~~V~~~~V~~~~d~~~g-~~l~a~vv~------~~----~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~   68 (73)
T PF13193_consen    1 EIESVLR-QHPGVAEAAVVGVPDEDWG-ERLVAFVVL------DE----EEIRDHLRDKLPPYMVPRRIRFVRLDEELPR   68 (73)
T ss_dssp             HHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEE------HH----HHHHHHHHHHS-GGGS-SEEEEEEESSSEEB
T ss_pred             CHHHHHh-cCCCccEEEEEEEEccccc-ccceeEEEe------ee----cccccchhhhCCCcceeeEEEEccccCcCCC
Confidence            7999997 9999999999999999888 999999998      22    45555577889999999  55555577 999


Q ss_pred             CCCch
Q 010114          494 TASNK  498 (518)
Q Consensus       494 t~~GK  498 (518)
                      |++||
T Consensus        69 t~~GK   73 (73)
T PF13193_consen   69 TPSGK   73 (73)
T ss_dssp             ETTSS
T ss_pred             CCCCC
Confidence            99998

...

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.98  E-value=2.2e-08  Score=96.44  Aligned_cols=227  Identities=18%  Similarity=0.089  Sum_probs=128.6

Q ss_pred             CCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---cccc-CCC-CcEEEeecCchhh---hhh--HHHHHhhhcCc
Q 010114          145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHID-LKV-GDVYCWPTNLGWV---MGP--VILFSSFLNGA  214 (518)
Q Consensus       145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~-~~~-~d~~l~~~pl~~~---~~~--~~~~~~l~~G~  214 (518)
                      +.+++..++.||||||.|--+.+.+..+..+.....   ..+. ... .-.++...|-...   ++.  ...+..+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            345677788899999998667777655554433222   2221 111 2233444443321   111  12333444555


Q ss_pred             EEEEecCCCChhHHHHHH----HHcCccEEEechHHHHHHHhcccCCCCC--cc-chhhhhccC------CCCCchh-hh
Q 010114          215 TLALYQGSPLERSFGKFV----QDAGVTVLGTVPSLVKAWRNTNCLEGLD--WT-KIRSFASTG------ETSNVDD-DL  280 (518)
Q Consensus       215 ~~~~~~~~~~~~~~~~~i----~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~-~lr~i~~~G------e~l~~~~-~~  280 (518)
                      ...+-....+.+.++..+    .+.++..+++.|.++-.++...+..+..  ++ ..+.+-.||      |.++.+. ..
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~  246 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA  246 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence            544423334455555544    4556888999998777666555444433  33 344444443      3465444 44


Q ss_pred             Hhhhcccc---CceeccccccccceeEeecCCCCCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccC
Q 010114          281 WLSSKAWY---NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLG  355 (518)
Q Consensus       281 ~~~~~~~~---~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~  355 (518)
                      .+.+.++.   .++++.||+||.....+.+.....       ...++  +.|.| ++-++++.|+  .|-|.+ .+...+
T Consensus       247 ~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~~-------~~p~w--V~iRDp~tl~~~~~Ge--~Gli~vidl~~~s  315 (365)
T PF04443_consen  247 RLQEVFGVIPIENIYDMYGMTELNSQAYECGHGHF-------HVPPW--VIIRDPETLEPLPPGE--TGLIQVIDLANTS  315 (365)
T ss_pred             HHHHHHCCCCHHHeeeeeeccccchhheeCCCCcc-------cCCCe--EEEECCCCCcCCCCCC--eeEEEEEcccccC
Confidence            55555533   369999999998876665533221       12244  66667 5678999998  588876 322111


Q ss_pred             CccccccccccceeeeCCCCCCCceeccccceEEEecC--------ceEEEeeccCC
Q 010114          356 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG--------GYIIVQGRADD  404 (518)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~--------g~l~~~gR~~d  404 (518)
                      .                    ++  ..-|.|+|.+..+        .++.++||.+.
T Consensus       316 ~--------------------p~--~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  316 Y--------------------PG--FILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             C--------------------Cc--EEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            1                    11  2469999987654        27899999774

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.76  E-value=1.7e-07  Score=95.63  Aligned_cols=163  Identities=17%  Similarity=0.120  Sum_probs=85.0

Q ss_pred             ccchhhhhccCCCCCchhhhHhhhccccCc-eeccccccccceeEeecCCCCCcccCCCCccccc---ccEEEECCCC--
Q 010114          261 WTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMT---AGLVILDECG--  334 (518)
Q Consensus       261 l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~-i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~i~~~~g--  334 (518)
                      +|+|+.+.+.+.--.......+++.+++.. +..+|++||+.. .+........     +...++   +++.-+++.+  
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i-~i~~~~~~~~-----~~l~~~~~ffEFip~~~~~~~  339 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFI-GIPLDPEDPG-----YVLAPDSGFFEFIPVDEDEQN  339 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEE-EEES-CCC-------EEE-TTSSEEEEEE-STT---
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEE-EEecCCCCCc-----eEeecCCeEEEEEeccCCccc
Confidence            668886555444444556677777777655 569999999533 2222111111     112222   2333333322  


Q ss_pred             -----CC-----CCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCceeccccceEEEec--Cc--eEEEee
Q 010114          335 -----VP-----YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV--GG--YIIVQG  400 (518)
Q Consensus       335 -----~~-----~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~--~g--~l~~~g  400 (518)
                           +.     +..|+  ..||+++..  +            +.|+          |+.||++++..  ++  .+.|+|
T Consensus       340 ~~~~~~~l~~~ele~G~--~YelviTt~--~------------GLyR----------Y~iGDvVrv~gf~~~~P~i~F~~  393 (528)
T PF03321_consen  340 PSEQPKTLLLHELEVGE--EYELVITTN--S------------GLYR----------YRIGDVVRVTGFYNQTPRIEFVG  393 (528)
T ss_dssp             ----SSSEEGGG--TT---EEEEEEEST--T------------S-SS----------EEECEEEEEEEEETTEEEEEEEE
T ss_pred             ccCCCceecHHHhcCCC--eEEEEEecc--c------------ceee----------eecCCEEEEeeccCCCcEEEEec
Confidence                 22     33444  355655211  1            1333          89999999853  34  799999


Q ss_pred             ccCCeeeeCceecchhHHHHHHhhc----CcccceeeEEEeCCCCCCccEEEEEEEecCC
Q 010114          401 RADDTMNLGGIKTSSVEIERVCDQA----DESILETAAISVSPAGGGPEVLVIFVVLKKG  456 (518)
Q Consensus       401 R~~d~i~~~G~~v~~~~iE~~l~~~----~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~  456 (518)
                      |.+.++.+.|++++-.+|++++.+.    .-.+.+.++......... ..-+.++.++..
T Consensus       394 R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~-~~Y~~~~e~~~~  452 (528)
T PF03321_consen  394 RRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNP-PHYVLFWELEGE  452 (528)
T ss_dssp             ETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSS-BEEEEEEEECS-
T ss_pred             cCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCC-CceEEEEEeCCC
Confidence            9999999999999999999999744    234666776655322222 344556666543

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=98.10  E-value=0.00039  Score=71.52  Aligned_cols=43  Identities=19%  Similarity=0.286  Sum_probs=38.3

Q ss_pred             ccccceEEEec----CceEEEeeccCCeeeeCceecchhHHHHHHhh
Q 010114          382 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ  424 (518)
Q Consensus       382 ~~TGD~~~~~~----~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~  424 (518)
                      |+.||++++..    --.|.|+||.+.++.+.|+++.-++++.++.+
T Consensus       410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            89999999863    34789999999999999999999999998874

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=98.01  E-value=1.8e-05  Score=60.85  Aligned_cols=85  Identities=25%  Similarity=0.415  Sum_probs=54.7

Q ss_pred             ceecchhHHHHHHhhcCcccc-eeeEEEeCCCCCCccEEEEEEEecCCCCC---ChhHHHHHHHHHHHhccCCccccceE
Q 010114          410 GIKTSSVEIERVCDQADESIL-ETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPLFKVSLV  485 (518)
Q Consensus       410 G~~v~~~~iE~~l~~~~~~v~-~~~vv~~~~~~~g~~~~~~~v~~~~~~~~---~~~~l~~~~~~~~~~~l~~~~~p~~i  485 (518)
                      |.+|+|.+||++|. ++|++. +..++. ...... ..+.+.|.+.++...   +.+++.+.+.+.+.+.+.  ..| .|
T Consensus         1 GvnvfP~~Ie~vl~-~~~~~~~~y~i~v-~~~~~~-D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg--v~~-~V   74 (96)
T PF14535_consen    1 GVNVFPSQIEEVLR-EFPEVSPEYQIVV-TREGGL-DELTVRVELRPGFSDDAEDLEALAERIAERLKERLG--VRP-EV   74 (96)
T ss_dssp             TEEE-HHHHHHHHC-TSTTEEEEEEEEE-EEETTE-EEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS--S-E-EE
T ss_pred             CcEECHHHHHHHHH-hCcCCCCcEEEEE-EcCCCC-cEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC--ceE-EE
Confidence            78999999999997 899998 555544 433334 677788888875432   346677777777777765  233 66


Q ss_pred             EEec--CCCCCCCchhHH
Q 010114          486 KVVP--EFPRTASNKLLR  501 (518)
Q Consensus       486 ~~v~--~~P~t~~GKv~R  501 (518)
                      .+++  ++||+ +||..|
T Consensus        75 ~lv~~gtLpr~-~~K~~R   91 (96)
T PF14535_consen   75 ELVPPGTLPRS-EGKAKR   91 (96)
T ss_dssp             EEE-TT-S----SSSS-S
T ss_pred             EEECCCCccCC-CCcceE
Confidence            6664  89997 678765

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.88  E-value=0.0041  Score=63.65  Aligned_cols=43  Identities=21%  Similarity=0.215  Sum_probs=37.6

Q ss_pred             ccccceEEEe----cCceEEEeeccCCeeeeCceecchhHHHHHHhh
Q 010114          382 RRHGDIIKRT----VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ  424 (518)
Q Consensus       382 ~~TGD~~~~~----~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~  424 (518)
                      ||.||+.++.    ....|.|++|.+.+..+.|+|.+-.++..++.+
T Consensus       417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHH
Confidence            8999999985    345799999999888999999999999888873

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.80  E-value=0.002  Score=65.73  Aligned_cols=43  Identities=19%  Similarity=0.273  Sum_probs=37.3

Q ss_pred             ccccceEEEec----CceEEEeeccCCeeeeCceecchhHHHHHHhh
Q 010114          382 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ  424 (518)
Q Consensus       382 ~~TGD~~~~~~----~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~  424 (518)
                      ||.||+.++..    ...+.|++|.+-+..+.|+|.+-.++..++.+
T Consensus       423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~  469 (612)
T PLN02620        423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN  469 (612)
T ss_pred             EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence            89999999853    45799999999888999999999999888863

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=93.29  E-value=0.48  Score=46.63  Aligned_cols=81  Identities=17%  Similarity=0.136  Sum_probs=67.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCH--HHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEe
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV--RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT   77 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~--e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~   77 (518)
                      +|+.++...+..+|+.|... ..+||+|..+..-+.  .-+...+|+.++|++.+|+.+.. -+....++++.++.+|.+
T Consensus       110 ~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tvI~~  188 (438)
T COG1541         110 YTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTVIAA  188 (438)
T ss_pred             cCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcEEEE
Confidence            68999999999999999999 999999888766221  22678899999999999998843 355578999999999999


Q ss_pred             chhhh
Q 010114           78 QDFIL   82 (518)
Q Consensus        78 ~~~~~   82 (518)
                      .+++.
T Consensus       189 tps~~  193 (438)
T COG1541         189 TPSYL  193 (438)
T ss_pred             ChHHH
Confidence            98654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	518
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		1e-34
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-34
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		1e-34
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		2e-34
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		6e-34
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		9e-34
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-33
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		8e-24
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		8e-11
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		8e-11
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		9e-11
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-10
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-07
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-07
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		3e-07
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		3e-07
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		4e-07
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		9e-07
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-06
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		4e-06
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-05
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		4e-05
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-04
3ite_A	562	The Third Adenylation Domain Of The Fungal Sidn Non		4e-04
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		9e-04

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 221/527 (41%), Gaps = 40/527 (7%)
Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL   V   AN L D    KGD +AI MPM   A +  LA    G V   I   F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
              +A R+  S ++ + T D  +R GR  PL   V  A       +    IVL   G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
                 +DL W+D +        P +     N  D +  IL++SG+TG+PK +  T    
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
           +   A  + ++ D   GD+Y    ++GWV G   +L+     GAT  +++G P   +  +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
             Q      V +L T P+ ++A        +EG D + +R   S GE  N +   W    
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
            W     E C   +       G  +     GA      +A          ++D  G  +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
            +    G + +   + G + R L  DHE         +K M     GD  +R   GY  +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
            GR DD +N+ G +  + EIE     A   I E A + +  A  G + +  +V L  G  
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             P+ L       ++ ++ PL    ++      P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 221/527 (41%), Gaps = 40/527 (7%)
Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL   V   AN L D    KGD +AI MPM   A +  LA    G V   I   F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
              +A R+  S ++ + T D  +R GR  PL   V  A       +    IVL   G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
                 +DL W+D +        P +     N  D +  IL++SG+TG+PK +  T    
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
           +   A  + ++ D   GD+Y    ++GWV G   +L+     GAT  +++G P   +  +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
             Q      V +L T P+ ++A        +EG D + +R   S GE  N +   W    
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
            W     E C   +       G  +     GA      +A          ++D  G  +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
            +    G + +   + G + R L  DHE         +K M     GD  +R   GY  +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
            GR DD +N+ G +  + EIE     A   I E A + +  A  G + +  +V L  G  
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             P+ L       ++ ++ PL    ++      P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 221/527 (41%), Gaps = 40/527 (7%)
Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL   V   AN L D    KGD +AI MPM   A +  LA    G V   I   F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
              +A R+  S ++ + T D  +R GR  PL   V  A       +    IVL   G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
                 +DL W+D +        P +     N  D +  IL++SG+TG+PK +  T    
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
           +   A  + ++ D   GD+Y    ++GWV G   +L+     GAT  +++G P   +  +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
             Q      V +L T P+ ++A        +EG D + +R   S GE  N +   W    
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
            W     E C   +       G  +     GA      +A          ++D  G  +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
            +    G + +   + G + R L  DHE         +K M     GD  +R   GY  +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
            GR DD +N+ G +  + EIE     A   I E A + +  A  G + +  +V L  G  
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             P+ L       ++ ++ PL    ++      P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 220/527 (41%), Gaps = 40/527 (7%)
Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL   V   AN L D    KGD +AI MPM   A +  LA    G V   I   F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
              +A R+  S ++ + T D  +R GR  PL   V  A       +    IVL   G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
                 +DL W+D +        P +     N  D +  IL++SG+TG+PK +  T    
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
           +   A  + ++ D   GD+Y    ++GWV G   +L+     GAT  +++G P   +  +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
             Q      V +L T P+ ++A        +EG D + +R   S GE  N +   W    
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
            W     E C   +       G  +     GA      +A          ++D  G  +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
            +    G + +   + G + R L  DHE         +K M     GD  +R   GY  +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
            GR DD +N+ G +  + EIE     A   I E A + +  A  G + +  +V L  G  
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             P+ L       +  ++ PL    ++      P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score =  142 bits (357), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 139/527 (26%), Positives = 220/527 (41%), Gaps = 40/527 (7%)
Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL   V   AN L D    KGD +AI MPM   A +  LA    G V   I   F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
              +A R+  S ++ + T D  +R GR  PL   V  A       +    IVL   G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
                 +DL W+D +        P +     N  D +  IL++SG+TG+PK +  T    
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
           +   A  + ++ D   GD+Y    ++GWV G   +L+     GAT  +++G P   +  +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
             Q      V +L T P+ ++A        +EG D + +R   S GE  N +   W    
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
            W     E C   +       G  +     GA      +A          ++D  G  +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
            +    G + +   + G + R L  DHE         +K M     GD  +R   GY  +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
            GR DD +N+ G +  + EIE     A   I E A + +  A  G + +  +V L  G  
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             P+ L       ++ ++ PL    ++      P+T S  ++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILR 616

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 139/527 (26%), Positives = 220/527 (41%), Gaps = 40/527 (7%)
Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL   V   AN L D    KGD +AI MPM   A +  LA    G V   I   F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
              +A R+  S ++ + T D  +R G   PL   V  A       +    IVL   G+D+
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
                 +DL W+D +        P +     N  D +  IL++SG+TG+PK +  T    
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
           +   A  + ++ D   GD+Y    ++GWV G   +L+     GAT  +++G P   +  +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
             Q      V +L T P+ ++A        +EG D + +R   S GE  N +   W    
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
            W     E C   +       G  +     GA      +A          ++D  G  +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
            +    G + +   + G + R L  DHE         +K M     GD  +R   GY  +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
            GR DD +N+ G +  + EIE     A   I E A + +  A  G + +  +V L  G  
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             P+ L       ++ ++ PL    ++      P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 139/527 (26%), Positives = 220/527 (41%), Gaps = 40/527 (7%)
Query: 1   MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL   V   AN L D    KGD +AI MPM   A +  LA    G V   I   F+
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDV 112
              +A  +  S ++ + T D  +R GR  PL   V  A       +    IVL   G+D+
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 113 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 172
                 +DL W+D +        P +     N  D +  IL++SG+TG+PK +  T    
Sbjct: 228 DW-QEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGY 281
Query: 173 IRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK 230
           +   A  + ++ D   GD+Y    ++GWV G   +L+     GAT  +++G P   +  +
Sbjct: 282 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341
Query: 231 FVQ---DAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 285
             Q      V +L T P+ ++A        +EG D + +R   S GE  N +   W    
Sbjct: 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY--- 398
Query: 286 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYP 338
            W     E C   +       G  +     GA      +A          ++D  G  +P
Sbjct: 399 -WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HP 455
Query: 339 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 398
            +    G + +   + G + R L  DHE         +K M     GD  +R   GY  +
Sbjct: 456 QEGATEGNLVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWI 512
Query: 399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 458
            GR DD +N+ G +  + EIE     A   I E A + +  A  G + +  +V L  G  
Sbjct: 513 TGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE 570
Query: 459 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
             P+ L       ++ ++ PL    ++      P+T S K++RR+LR
Sbjct: 571 PSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score =  108 bits (270), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 128/537 (23%), Positives = 229/537 (42%), Gaps = 50/537 (9%)
Query: 1   MTYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 58
           +TYKEL E+V  VA  L       KGD +A+ MPM   A+I  LAI   G +   +   F
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173
Query: 59  AAREIATRLRVSKAKGIFTQDFILRGGRKFP---LYSKVLGAAP-LKAIVLPAIGNDVGI 114
           ++  +  R+    +K + T D   RGG+      +    L   P ++ +++    N+  +
Sbjct: 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 233
Query: 115 PLRE-QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV--VNILFSSGTTGEPKAIPWTQ-- 169
                +DL W     + +      YY     PVD+   + +L++SG+TG PK +  +   
Sbjct: 234 AFHAPRDLDW-----ATEKKKYKTYYP--CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAG 286
Query: 170 -----LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSP 223
                L ++R T       D    DV+    ++GW+ G   +++   L G    +++G+P
Sbjct: 287 YLLGALLTMRYT------FDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTP 340
Query: 224 LERSFGKF---VQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDD 278
              ++ ++   + +  VT     P+ ++  +    + +E      +R   S GE    + 
Sbjct: 341 AYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEV 400
Query: 279 DLWLSSKAWYNA--IIESCGGTELSSAYIQ--GSLLQPQAFGAFSTATMTAGLVILDECG 334
             W S K   N   I+++   TE  S  +      + P   G+ S        V+LD   
Sbjct: 401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNT 460
Query: 335 VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG 394
               +     G + +   +   + R +  +H+      +  Y G      GD   +   G
Sbjct: 461 GEELNTSHAEGVLAVKAAWPSFA-RTIWKNHDRYLDTYLNPYPGYYFT--GDGAAKDKDG 517
Query: 395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 454
           YI + GR DD +N+ G + S+ EIE    + D  + E A +  +    G + +  FVVLK
Sbjct: 518 YIWILGRVDDVVNVSGHRLSTAEIEAAIIE-DPIVAECAVVGFNDDLTG-QAVAAFVVLK 575
Query: 455 KG---FTSQPDKLKMIFSK---AIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 505
                 T+  D+L+ I       ++  + P     L+ +V + P+T S K++RR+LR
Sbjct: 576 NKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 130/557 (23%), Positives = 212/557 (38%), Gaps = 104/557 (18%)
Query: 2   TYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            ++EL E     AN L       +GD +A+ +P      ++ L  I AG + +       
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           + +I  RL++SKAK I   D             +V+      A   P++   + +  +  
Sbjct: 135 STDILYRLQMSKAKAIVAGD-------------EVIQEVDTVASECPSLRIKLLVSEKSC 181
Query: 120 D--LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 177
           D  L++K  L+          +  V         I F+SGT+G PK       SS+   A
Sbjct: 182 DGWLNFKKLLNEAS-----TTHHCVETGSQEASAIYFTSGTSGLPKMAE-HSYSSLGLKA 235
Query: 178 E---GWAHIDLKVGDVYCWPTNLGWV-------MGPVIL-----------FSSFLNGATL 216
           +   GW    L+  D+    ++ GW+       M P  L           F   +   TL
Sbjct: 236 KMDAGWT--GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTL 293
Query: 217 ALY-----QGSPL--------ERSFGKFVQDAGVTVLGT--VPSLVKAWRNTNCLEGLDW 261
           + Y      G+P+        + S  KF        +G   +P  ++ WR      GLD 
Sbjct: 294 SSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GLDI 350
Query: 262 TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA 321
            +      TG T  V   + +  K  Y     SC   ++     +G++L P   G     
Sbjct: 351 RESYGQTETGLTCMVSKTMKI--KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG----- 401
Query: 322 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCL 381
                     + G+     +P    +G+F  Y+       N D      RG         
Sbjct: 402 ----------DIGIRVKPIRP----IGIFSGYVD------NPDKTAANIRGD-------F 434
Query: 382 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 441
              GD   +   GY    GRADD +N  G +    E+E    +   +++ETA IS SP  
Sbjct: 435 WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME-HPAVVETAVIS-SPDP 492
Query: 442 GGPEVLVIFVVLKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 500
              EV+  FVVL   F S  P++L     + ++S   P      ++ V   P+T + K+ 
Sbjct: 493 VRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQ 552
Query: 501 RRVLRDQIKHELSVRSR 517
           R  LRD+ + ++S ++R
Sbjct: 553 RAKLRDK-EWKMSGKAR 568

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 128/521 (24%), Positives = 200/521 (38%), Gaps = 68/521 (13%)
Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           MTY ++       A+ L  +  +KGD +A+ MP +V    ++      G V V I    A
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A E++  L  S +K       ++ G    P+   +   A     V   IG D    L E+
Sbjct: 104 APEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAER 154
Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
             S      +V+     N +            I+++SGTTG PK +  T   S+   A  
Sbjct: 155 LRSAAADEPAVECGGDDNLF------------IMYTSGTTGHPKGVVHTH-ESVHSAASS 201
Query: 180 WAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 238
           WA  ID++  D    P  +  V     +  S + G TL         + +   V++  V 
Sbjct: 202 WASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VC 260
Query: 239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AI 291
           + G VP+++   R       LD    R F + G       +  +   A  N       A+
Sbjct: 261 IGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM---PEALIKIYAAKNIEVVQGYAL 317
Query: 292 IESCGGTELSSAYIQGSLLQPQAF---GAFSTATMTAGLVILDECGVPYPDDQPCVGEVG 348
            ESCGG  L        LL   A    G+   ATM   + +  + GV     +   GEV 
Sbjct: 318 TESCGGGTL--------LLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGE---GEVV 366
Query: 349 LFPLYLGASDRLLNADHEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTM 406
           +       SD LL    +E + R             R GDI +    GY+ ++ R  D +
Sbjct: 367 I------KSDILL----KEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMI 416
Query: 407 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 466
             GG      EIE V       + E A I +     G E+    VV  +   S+   ++ 
Sbjct: 417 ISGGENVYPAEIESVIIGV-PGVSEVAVIGLPDEKWG-EIAAAIVVADQNEVSEQQIVEY 474
Query: 467 IFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 507
             ++  + KL    KV   + +P  P   + K+L+ VLR+Q
Sbjct: 475 CGTRLARYKLPK--KVIFAEAIPRNP---TGKILKTVLREQ 510

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 130/557 (23%), Positives = 212/557 (38%), Gaps = 104/557 (18%)
Query: 2   TYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            ++EL E     AN L       +GD +A+ +P      ++ L  I AG + +       
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           + +I  RL++SKAK I   D             +V+      A   P++   + +  +  
Sbjct: 135 STDILYRLQMSKAKAIVAGD-------------EVIQEVDTVASECPSLRIKLLVSEKSC 181
Query: 120 D--LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 177
           D  L++K  L+          +  V         I F+SGT+G PK       SS+   A
Sbjct: 182 DGWLNFKKLLNEAS-----TTHHCVETGSQEASAIYFTSGTSGLPKMAE-HSYSSLGLKA 235
Query: 178 E---GWAHIDLKVGDVYCWPTNLGWV-------MGPVIL-----------FSSFLNGATL 216
           +   GW    L+  D+    ++ GW+       M P  L           F   +   TL
Sbjct: 236 KMDAGWT--GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTL 293
Query: 217 ALY-----QGSPL--------ERSFGKFVQDAGVTVLGT--VPSLVKAWRNTNCLEGLDW 261
           + Y      G+P+        + S  KF        +G   +P  ++ WR      GLD 
Sbjct: 294 SSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GLDI 350
Query: 262 TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA 321
            +      TG T  V   + +  K  Y     SC   ++     +G++L P   G     
Sbjct: 351 RESYGQTETGLTCMVSKTMKI--KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG----- 401
Query: 322 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCL 381
                     + G+     +P    +G+F  Y+       N D      RG         
Sbjct: 402 ----------DIGIRVKPIRP----IGIFSGYVD------NPDKTAANIRGD-------F 434
Query: 382 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 441
              GD   +   GY    GRADD +N  G +    E+E    +   +++ETA IS SP  
Sbjct: 435 WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME-HPAVVETAVIS-SPDP 492
Query: 442 GGPEVLVIFVVLKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 500
              EV+  FVVL   F S  P++L     + ++S   P      ++ V   P+T + K+ 
Sbjct: 493 VRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQ 552
Query: 501 RRVLRDQIKHELSVRSR 517
           R  LRD+ + ++S ++R
Sbjct: 553 RAKLRDK-EWKMSGKAR 568

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 156/367 (42%), Gaps = 26/367 (7%)
Query: 147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNL--GWVMG 202
           D +   L+SSG+TG+PK    T  +++  TAE +A   L +   DV      L   + +G
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLG 241
Query: 203 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 262
             + F   +    + + +    +  F + V+    TV   VP+L      +  L      
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRP-TVFYGVPTLYANMLVSPNLPARADV 300
Query: 263 KIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTA 321
            IR   S GE   +  ++     A +   I++  G TE+   ++       + +G     
Sbjct: 301 AIRICTSAGEA--LPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVE-YGTTGRP 357
Query: 322 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNADHEEVYFRGMPMYKGMC 380
                + + DE G   PD     GEVG   LY+ G S  ++  ++ E   +    + G  
Sbjct: 358 VPGYEIELRDEAGHAVPD-----GEVG--DLYIKGPSAAVMYWNNRE---KSRATFLGEW 407
Query: 381 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 440
           +R  GD   R   G  +  GR+DD + + G   S VE+E V  Q D ++LE A + V   
Sbjct: 408 IRS-GDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHD-AVLEAAVVGVD-- 463
Query: 441 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 500
            GG      FVVLK+ F    + L       ++ +L P      +  V + P+TA+ K+ 
Sbjct: 464 HGGLVKTRAFVVLKREFAPS-EILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQ 522
Query: 501 RRVLRDQ 507
           R  LR+Q
Sbjct: 523 RFKLREQ 529

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 377 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 436
           KG    R GD+      G++  Q R  + +   G   +  E+E +  +  E++ + A I 
Sbjct: 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXK-HEAVXDVAVIG 471
Query: 437 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS 496
             P     EV   F+VLK  +  + D+  +I  + ++ +++   +V  V+ V E PRTAS
Sbjct: 472 -KPDEEAGEVPKAFIVLKPEYRGKVDEEDII--EWVRERISGYKRVREVEFVEELPRTAS 528
Query: 497 NKLLRRVLRDQ 507
            KLLRR+LR++
Sbjct: 529 GKLLRRLLREK 539

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 111/318 (34%), Gaps = 65/318 (20%)
Query: 133 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD 189
           HP  ++ +   +P D V     S GTTG PK IP T      S+R + E       +   
Sbjct: 171 HPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE-ICQFTQQTRY 228
Query: 190 VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 249
           +   P    + M        FL G T+ L         F   ++   V V   VP  V  
Sbjct: 229 LCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCF-PLIEKHQVNVTALVPPAVSL 287
Query: 250 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ--- 306
           W     +EG    ++ S                         +   GG  LS+       
Sbjct: 288 WLQA-LIEGESRAQLASLK-----------------------LLQVGGARLSATLAARIP 323
Query: 307 ---GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFP 351
              G  LQ Q FG      M  GLV           I+   G P  PDD+  V +    P
Sbjct: 324 AEIGCQLQ-QVFG------MAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP 376
Query: 352 LYLGASDRLLNADHEEVYFRGM---PMYKGMCLRRHG-----DIIKRTVGGYIIVQGRAD 403
           L  G   RL+        FRG    P +       +G     D+I     GYI VQGR  
Sbjct: 377 LPQGEVGRLMT--RGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREK 434
Query: 404 DTMNLGGIKTSSVEIERV 421
           D +N GG K ++ EIE +
Sbjct: 435 DQINRGGEKIAAEEIENL 452

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 347 VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM 406
           VGLF  Y    +R     H+  Y               GD+      GY+   GRADD +
Sbjct: 432 VGLFVHYGKDPERTEETWHDGYY-------------HTGDMAWMDEDGYLWFVGRADDII 478
Query: 407 NLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLK 465
              G K    E+E    Q   ++LE A   V  P  G  +V+   +VL K +T   D LK
Sbjct: 479 KTSGYKVGPFEVESALIQH-PAVLECAITGVPDPVRG--QVIKATIVLTKDYTPS-DSLK 534
Query: 466 MIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 507
                 +++   P     +++ VPE P+T S K+ R  +RD+
Sbjct: 535 NELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 119/309 (38%), Gaps = 35/309 (11%)
Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           MTY ++       A+ L  +  +KGD +A+ MP +V    ++      G V V I    A
Sbjct: 30  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A E++  L  S +K       ++ G    P+   +   A     V   IG D    L E+
Sbjct: 90  APEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAER 140
Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
             S      +V+     N +            I+++SGTTG PK +  T   S+   A  
Sbjct: 141 LRSAAADEPAVECGGDDNLF------------IMYTSGTTGHPKGVVHTH-ESVHSAASS 187
Query: 180 WAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 238
           WA  ID++  D    P  +  V     +  S + G TL         + +   V++  V 
Sbjct: 188 WASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VC 246
Query: 239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AI 291
           + G VP+++   R       LD    R F + G       +  +   A  N       A+
Sbjct: 247 IGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMP---EALIKIYAAKNIEVVQGYAL 303
Query: 292 IESCGGTEL 300
            ESCGG  L
Sbjct: 304 TESCGGGTL 312

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 150/405 (37%), Gaps = 104/405 (25%)
Query: 149 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 208
           V  ++F+SG+TG PK +  +   ++  T  G  +      +V+   + + W    + LF 
Sbjct: 216 VACVMFTSGSTGRPKGV-MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 209 SFLNGATLALYQGS---PLERSFGKFVQDAGVTVL------------------------- 240
           + L GA   L  G    PLE   G+ V   GVT+L                         
Sbjct: 275 ALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAI 332
Query: 241 -----GTVPSLVKAWRNTNCLE-GLDWTKIRSFASTGETSNVDDDLW---------LSSK 285
                 +VP + KA R+   L  G  +    S   T   + V  DL          L+ K
Sbjct: 333 TGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGK 392
Query: 286 AWY--NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 343
             Y  +  ++      L   Y+ G+ L   A G  S   +TA   + D          P 
Sbjct: 393 RAYVLDDDLKPAANGALGELYVAGAGL---AHGYVSRPALTAERFVAD----------PF 439
Query: 344 VGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 403
            G  G                 E +Y             R GD+ +R   G +   GRAD
Sbjct: 440 AGPGG-----------------ERMY-------------RTGDLARRRADGVLEYVGRAD 469
Query: 404 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD- 462
           D + + G +    E+E          +  AA+    +  G + LV +VV ++   + PD 
Sbjct: 470 DQVKIRGFRVEPGEVE--ARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERA-DAPPDA 526
Query: 463 -KLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVL 504
            +L+   ++A+ + + P      V+ VP  E PRT + KL RR L
Sbjct: 527 AELRRHVAEALPAYMVP------VECVPVDELPRTPNGKLDRRAL 565

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 442
           R GDI++ T  GYI+V+GRA D +N GG K ++ E+E     A  ++ + A +S+     
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMVSMPDQFL 468
Query: 443 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 502
           G E   +F++ +       +    +  + + +   P      V+ V  FP+T   K+ ++
Sbjct: 469 G-ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIP----DRVEFVESFPQTGVGKVSKK 523
Query: 503 VLRDQIKHEL 512
            LR+ I  +L
Sbjct: 524 ALREAISEKL 533

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 383 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 442
           R GDI++ T  GYI+V+GRA D +N GG K ++ E+E     A  ++ + A +S      
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAXVSXPDQFL 468
Query: 443 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 502
           G E   +F++ +       +    +  + + +   P      V+ V  FP+T   K+ ++
Sbjct: 469 G-ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIP----DRVEFVESFPQTGVGKVSKK 523
Query: 503 VLRDQIKHEL 512
            LR+ I  +L
Sbjct: 524 ALREAISEKL 533

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 107/526 (20%), Positives = 200/526 (38%), Gaps = 62/526 (11%)
Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           TY ++      VA+ L+ +   +GD I + +P +   V+ +L     G ++ +       
Sbjct: 51  TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV----LGAAPLKAIVLPAIGNDVGIPL 116
            E+A   + S+AK + TQ       + F   S V    + +AP           D  +  
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAP-----------DGCLHF 159
Query: 117 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT 176
            E   + ++    VD  P            D VV + +SSGTTG PK +  T    I   
Sbjct: 160 SELTQADENEAPQVDISP------------DDVVALPYSSGTTGLPKGVMLTHKGLITSV 207
Query: 177 AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-------RSFG 229
           A+    +D    ++Y    ++   + P+    +  +     L  G+P+         S  
Sbjct: 208 AQ---QVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLL 264
Query: 230 KFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 289
             ++   V++   VP ++ +   +  L+  D + +R   S G     + +  + +K    
Sbjct: 265 GLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324
Query: 290 AIIESCGGTELSSAYIQGSLLQPQAF----GAFSTATMTAGLVILD-ECGVPYPDDQPCV 344
            + +  G TE             + F    GA  T    A + I+D E G   P +QP  
Sbjct: 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP-- 382
Query: 345 GEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 404
           GE+ +        D+++     +       + K   L               IV  R  +
Sbjct: 383 GEICI------RGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVD-RLKE 435
Query: 405 TMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL 464
            +   G + +  E+E +   A   I + A + +     G EV V FVV  +   +  D++
Sbjct: 436 LIKYKGFQVAPAELEALL-IAHPEISDAAVVGLKDEDAG-EVPVAFVVKSEKSQATEDEI 493
Query: 465 KMIFSKAIQSKLNPLF--KVSLVKVVPEFPRTASNKLLRRVLRDQI 508
           K   SK +      +F  ++  V  +   P+  S K+LR+ L++++
Sbjct: 494 KQYISKQV------IFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 149/391 (38%), Gaps = 45/391 (11%)
Query: 141 PVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIRCT-AEGWAHIDLKVGDVYCWPT 195
           PV  P  A   + +++GTTG PK + ++     L S+  +  +G A   L   DV     
Sbjct: 170 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVV 226
Query: 196 NLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 255
            +  V    + +++ L GA   L        S  +     GVT    VP++  A  +   
Sbjct: 227 PMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLE 286
Query: 256 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG-------S 308
             G     +R     G  S     L    +     + +  G TE S   +Q        S
Sbjct: 287 STGHRLKTLRRLVVGG--SAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLES 344
Query: 309 LLQPQAFGAFSTATMTAGLVIL---DECGVPYPDDQPCVGEVGLFPL-----YLGASDRL 360
           L + +     +   +   LV L   DE G P P D   +GEV L        Y G  +  
Sbjct: 345 LSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEAT 404
Query: 361 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
            +A   + +FR             GDI      GY+ ++ R  D +  GG   SSV++E 
Sbjct: 405 RSALTPDGFFRT------------GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 452
Query: 421 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN-PL 479
                   + E A +++         L   VV+ +G    P++L     KA  +K   P 
Sbjct: 453 AL-MGHPKVKEAAVVAIPHPKWQERPLA--VVVPRGEKPTPEELNEHLLKAGFAKWQLPD 509
Query: 480 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 510
             V       E PRT++ K L+R LR+Q K+
Sbjct: 510 AYV----FAEEIPRTSAGKFLKRALREQYKN 536

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 114/526 (21%), Positives = 200/526 (38%), Gaps = 65/526 (12%)
Query: 1   MTYKELREQVMLVANALDTMFS-KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL E+   +A  L    + KG  +A+    ++  VI  L ++ AG   + +     
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
              I+  L  S A  + T   +     + P     L               D      EQ
Sbjct: 550 EDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFI-------------DDQTRFEEQ 596
Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
                D  +++D    PN   P Y        I+++SGTTG+PK    T  ++I+   + 
Sbjct: 597 ---ASDPATAID----PN--DPAY--------IMYTSGTTGKPKGNITTH-ANIQGLVKH 638
Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAG 236
             ++     D +   +N  +       ++S LN A L +     L   ER     +Q+  
Sbjct: 639 VDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQE-N 697
Query: 237 VTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWYNAIIESC 295
           V V+    +L     +     G DW K +R     GE ++V              +I   
Sbjct: 698 VNVMFATTALFNLLTDA----GEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCY 753
Query: 296 GGTE---LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPL 352
           G TE    ++A++   L    +          A + IL+E     P      G VG   +
Sbjct: 754 GPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQP-----FGAVGELCI 808
Query: 353 Y-LGASDRLLN-ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 410
             +G S   +N AD  +  F   P   G  L R GD+ +    G I   GR DD + + G
Sbjct: 809 SGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRG 868
Query: 411 IKTSSVEIERVCDQADESI-LETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 469
            +   +E+E +  Q  E   ++ A +       G   +  ++V +   +++   +K    
Sbjct: 869 HR---IELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAE--DVKAHLK 923
Query: 470 KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL----RDQIKHE 511
           K + + + P         + E P T + K+ +R+L    +DQ+  E
Sbjct: 924 KQLPAYMVP----QTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEE 965

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 108/533 (20%), Positives = 191/533 (35%), Gaps = 81/533 (15%)
Query: 12  LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 71
           + AN      ++ D + + +P     V+ +LA    G    +    F   EIA + + S 
Sbjct: 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160
Query: 72  AKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 131
            K I T+   +   +  PL +          +V+  I ++  +P+ E  L + +   S  
Sbjct: 161 TKLIITEARYVDKIK--PLQND-------DGVVIVCIDDNESVPIPEGCLRFTELTQST- 210
Query: 132 YHPRPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV 187
                   S V + V    D VV + +SSGTTG PK +  T    +   A+    +D + 
Sbjct: 211 -----TEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ---QVDGEN 262
Query: 188 GDVYCWPTNLGWVMGPV--------ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239
            ++Y    ++   + P+        I+      GA + +     +     + +Q   VTV
Sbjct: 263 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL-ELIQRCKVTV 321
Query: 240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 299
              VP +V A   ++  E  D + IR   S       + +  +++K     + +  G TE
Sbjct: 322 APMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE 381
Query: 300 LSSAYIQGSLLQPQAF----GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLG 355
                        + F    GA  T    A + I+D      PD                
Sbjct: 382 AGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD------PD---------------- 419
Query: 356 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY--------------IIVQGR 401
             D L      E+  RG  + KG               G+              + +  R
Sbjct: 420 TGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDR 479
Query: 402 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 461
             + +   G + +  E+E +       I + A +++     G EV V FVV  K      
Sbjct: 480 LKELIKYKGFQVAPAELEALL-IGHPDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSE 537
Query: 462 DKLKMIFSKAI--QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512
           D +K   SK +    ++N +F           P+  S K+LR+ LR ++ + L
Sbjct: 538 DDVKQFVSKQVVFYKRINKVF------FTESIPKAPSGKILRKDLRAKLANGL 584

>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 106/490 (21%), Positives = 176/490 (35%), Gaps = 111/490 (22%)
Query: 2   TYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAR 61
           TYK+L E    VAN +      G AIA+ +  ++ A  I + I  +G   V I       
Sbjct: 57  TYKKLNETANQVANLIIHASLHGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPND 116
Query: 62  EIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDL 121
             +  LR S+A   F  D     G + P  +KVL                       ++ 
Sbjct: 117 RKSFLLRDSRAAXAFVCDNNF-DGVELPPETKVLDT---------------------KNQ 154
Query: 122 SWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA 181
           S+ + LS+ D     N Y     P +    +L++SG+TG PK +  ++  ++   ++ W 
Sbjct: 155 SFIENLSTQDTSDILNNY-----PENLDAYLLYTSGSTGTPKGVRVSR-HNLSSFSDAWG 208
Query: 182 HI-------DLKVG-------------DVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 221
            +        L++G             DV+     L W  G        + G  L+    
Sbjct: 209 KLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEXFLAWRFGLCA-----VTGERLSXLDD 263
Query: 222 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSN-VDDDL 280
            P  R+F    ++ GVT  G VPSL+    +   L   D   +      GE        +
Sbjct: 264 LP--RTF----RELGVTHAGIVPSLL----DQTGLVPEDAPHLVYLGVGGEKXTPRTQQI 313
Query: 281 WLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDD 340
           W SS     A++   G TE+                   T   +AG ++ D        D
Sbjct: 314 WSSSDRV--ALVNVYGPTEV-------------------TIGCSAGRILPDS-------D 345
Query: 341 QPCV----GEVGLFPLYLGASDRLLNADHEEVYFRG---------MPMYKGMC------L 381
             C+    G+     L  G+++ +      E+   G          P  KG C       
Sbjct: 346 TRCIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKGFCDINGRKX 405
Query: 382 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 441
            R GDI++      I+  GR D+ + + G +    E+  V      + ++   + ++  G
Sbjct: 406 YRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPG 465
Query: 442 GGPEVLVIFV 451
              + LV FV
Sbjct: 466 TSKQFLVSFV 475

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1   MTYKEL-REQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y EL R    L     +    KGD   + +P      I++ A++ AG VV++   S  
Sbjct: 56  LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115
Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
             E+   ++  + K       +L G R+  ++S       L  + L     ++ + L  Q
Sbjct: 116 QYELNAFIKQIQPK-------LLIGSRQHEVFSNNQFIDSLHDVNLSP---EIILMLNHQ 165
Query: 120 --DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS---SIR 174
             D    D++ +    P   +      P D V     S G+TG PK IP T      S+R
Sbjct: 166 ATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVR 221
Query: 175 CTAE 178
            +AE
Sbjct: 222 ASAE 225

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	518
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	7e-53
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	7e-45
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-38
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	2e-34
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	9e-34
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	3e-33
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	3e-28
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	9e-26
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	5e-07
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-25
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-06
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-25
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-24
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-23
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-04
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	4e-23
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	4e-07
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-22
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-09
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	4e-22
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	4e-11
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	9e-21
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-06
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-17
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-10
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	9e-14
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-08
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	8e-13
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	7e-08
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	6e-08
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	6e-05
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-07
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-05
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	6e-07
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	5e-06
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	4e-05
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	3e-04

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  186 bits (475), Expect = 7e-53
 Identities = 117/523 (22%), Positives = 191/523 (36%), Gaps = 58/523 (11%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY EL E+    A+AL T+     + I + M  TV   + +L  + AG V V       
Sbjct: 49  TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
             +    L  S A+ +     ++         ++ L +A      L         P    
Sbjct: 109 PADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRESEP--RL 160

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
              +++ + +                 D +   L+SSG+TG+PK    T  +++  TAE 
Sbjct: 161 APLFEELIDA-----AAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAEL 214

Query: 180 WAH--IDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAG 236
           +A   + +   DV      L +  G    L      GAT  L    P   +    + +  
Sbjct: 215 YAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHR 274

Query: 237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----II 292
            TV   VP+L      +  L       IR   S GE      ++    + +       I+
Sbjct: 275 PTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPR--EIG---ERFTAHFGCEIL 329

Query: 293 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV----- 347
           +  G TE+   ++  +      +G          + + DE G   PD +  VG++     
Sbjct: 330 DGIGSTEMLHIFL-SNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGE--VGDLYIKGP 386

Query: 348 GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN 407
               +Y        N +     F G          R GD   R   G  +  GR+DD + 
Sbjct: 387 SAAVMYWN------NREKSRATFLG-----EWI--RSGDKYCRLPNGCYVYAGRSDDMLK 433

Query: 408 LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI 467
           + G   S VE+E V  Q  +++LE A + V   G        FVVLK+ F       + +
Sbjct: 434 VSGQYVSPVEVEMVLVQ-HDAVLEAAVVGVDHGGL--VKTRAFVVLKREFAPSEILAEEL 490

Query: 468 --FSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQ 507
             F K    +L P  K    +  V + P+TA+ K+ R  LR+Q
Sbjct: 491 KAFVKD---RLAP-HKYPRDIVFVDDLPKTATGKIQRFKLREQ 529

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  165 bits (419), Expect = 7e-45
 Identities = 115/539 (21%), Positives = 193/539 (35%), Gaps = 85/539 (15%)

Query: 1   MTYKELREQVMLVANALDTMF--SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 58
             ++EL E     AN L       +GD +A+ +P      ++ L  I AG + +      
Sbjct: 74  WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133

Query: 59  AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGI 114
            + +I  RL++SKAK I   D          +  +V   A     L+  +L      V  
Sbjct: 134 KSTDILYRLQMSKAKAIVAGD---------EVIQEVDTVASECPSLRIKLL------VSE 178

Query: 115 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 174
              +  L++K  L+          +  V         I F+SGT+G PK    +  S   
Sbjct: 179 KSCDGWLNFKKLLNEA-----STTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGL 233

Query: 175 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFV 232
                     L+  D+    ++ GW++  +  L   +  GA   ++     +     K +
Sbjct: 234 KAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTL 293

Query: 233 QDAGVTVLGTVPS----LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 288
               +  +   P     L++       L    +  +++  + GE+     +     + W 
Sbjct: 294 SSYPIKSMMGAPIVYRMLLQQD-----LSSYKFPHLQNCVTVGESLL--PETL---ENWR 343

Query: 289 NA----IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 344
                 I ES G TE +      S       G   TA     + I+D+ G   P      
Sbjct: 344 AQTGLDIRESYGQTE-TGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT--E 400

Query: 345 GE----------VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG 394
           G+          +G+F  Y+   D+       + +               GD   +   G
Sbjct: 401 GDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-------------GDRGIKDEDG 447

Query: 395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVL 453
           Y    GRADD +N  G +    E+E        +++ETA IS   P  G  EV+  FVVL
Sbjct: 448 YFQFMGRADDIINSSGYRIGPSEVENAL-MEHPAVVETAVISSPDPVRG--EVVKAFVVL 504

Query: 454 KKGFTSQP-DKLKMIFSKAIQ----SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 507
              F S   ++L     K +Q    S   P      ++ V   P+T + K+ R  LRD+
Sbjct: 505 ASQFLSHDPEQLT----KELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  147 bits (374), Expect = 1e-38
 Identities = 112/543 (20%), Positives = 189/543 (34%), Gaps = 91/543 (16%)

Query: 2   TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           T+K+L+      AN        KGD + + +          L +   G + V        
Sbjct: 88  TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 120
           R+I  R+  +  K I                 +           +P     VG  + E  
Sbjct: 148 RDIVYRIEKAGLKMIVCIA----EDDVPEQVDEAHAECG----DIPLKKAKVGGDVLEGW 199

Query: 121 LSWKDFL-SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
           + ++  L  S     RP          D  + + FSSGT G PK +       L  I  T
Sbjct: 200 IDFRKELEESSPIFERPTGEVST-KNEDICL-VYFSSGTAGFPKMVEHDNTYPLGHIL-T 256

Query: 177 AEGWAHIDLKVGDVYCW-PTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFVQ 233
           A+ W   +++   ++ +   + GW       L+  ++ G  + +Y     E ++  +   
Sbjct: 257 AKYW--QNVEDDGLH-YTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKAS 313

Query: 234 DAGVTVLGTVP----SLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 289
             GVT     P     L+K       L   +++ ++     GE  N   +++     +  
Sbjct: 314 KYGVTTFCAPPTIYRFLIKED-----LSHYNFSTLKYAVVAGEPLN--PEVF---NRFLE 363

Query: 290 A----IIESCGGTE--LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 343
                ++E  G TE  ++ A       +P   G+    T    + ++D  G      +  
Sbjct: 364 FTGIKLMEGFGQTETVVTIATFPWMEPKP---GSIGKPTPGYKIELMDRDGRLCEVGE-- 418

Query: 344 VGE----------VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 393
            GE          VGLF  Y    +R     H+  Y               GD+      
Sbjct: 419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHT-------------GDMAWMDED 465

Query: 394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLV 448
           GY+   GRADD +   G K    E+E        ++LE A   V      P     +V+ 
Sbjct: 466 GYLWFVGRADDIIKTSGYKVGPFEVESAL-IQHPAVLECAITGV------PDPVRGQVIK 518

Query: 449 IFVVLKKGFTSQPDKLKMIFSKAIQ----SKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 504
             +VL K +T   D LK      +Q    +   P     +++ VPE P+T S K+ R  +
Sbjct: 519 ATIVLTKDYTPS-DSLK----NELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEI 573

Query: 505 RDQ 507
           RD+
Sbjct: 574 RDK 576

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score =  136 bits (345), Expect = 2e-34
 Identities = 144/571 (25%), Positives = 220/571 (38%), Gaps = 126/571 (22%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYV 50
           ++Y+EL   V   AN L  +   KGD +AI MPM   A +  LA         +I  G  
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG-- 165

Query: 51  VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV-----LGAAPL--KAI 103
                  F+   +A  +  S ++ + T D  +R GR  PL   V               I
Sbjct: 166 -------FSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218

Query: 104 VLPAIGNDVG-IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTG 160
           VL   G+D+     R  DL W+D +           + P    ++A   + IL++SG+TG
Sbjct: 219 VLKRTGSDIDWQEGR--DLWWRDLIEKA-----SPEHQPE--AMNAEDPLFILYTSGSTG 269

Query: 161 EPKAIPWTQLSSIRCTAEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSS 209
           +PK +  T       T  G   +A        D   GD+Y W T ++GWV G   +L+  
Sbjct: 270 KPKGVLHT-------TG-GYLVYAATTFKYVFDYHPGDIY-WCTADVGWVTGHSYLLYGP 320

Query: 210 FLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK--- 263
              GAT  +++G P   +  +    V    V +L T P+ ++A       EG    +   
Sbjct: 321 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA----EGDKAIEGTD 376

Query: 264 ---IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI-----Q----GSLLQ 311
              +R   S GE  N   + W     WY   I   G        +     Q    G ++ 
Sbjct: 377 RSSLRILGSVGEPIN--PEAWE----WYWKKI---GK---EKCPVVDTWWQTETGGFMIT 424

Query: 312 PQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------ 358
           P   GA      +A          ++D  G P           G     L  +D      
Sbjct: 425 PLP-GAIELKAGSATRPFFGVQPALVDNEGHPQEG-----ATEG----NLVITDSWPGQA 474

Query: 359 RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 415
           R L  DHE   + YF     +K M     GD  +R   GY  + GR DD +N+ G +  +
Sbjct: 475 RTLFGDHERFEQTYF---STFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529

Query: 416 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 475
            EIE     A   I E A + +  A  G + +  +V L  G      +L       ++ +
Sbjct: 530 AEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEP-SPELYAEVRNWVRKE 586

Query: 476 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 506
           + PL    ++      P+T S K++RR+LR 
Sbjct: 587 IGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  133 bits (337), Expect = 9e-34
 Identities = 107/543 (19%), Positives = 187/543 (34%), Gaps = 89/543 (16%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            +Y+EL  +   +A     +   + D + + +P       +  A+   G + V    S  
Sbjct: 51  WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLRE 118
           + EI      ++A      D    G     L  +V    P LK I++       G    E
Sbjct: 111 SSEITYFCEFAEAAAYIIPD-AYSGFDYRSLARQVQSKLPTLKNIIV------AGEA--E 161

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRC 175
           + L  +D  +     P              V  +  S G+TG  K IP T    + S++ 
Sbjct: 162 EFLPLEDLHTEPVKLPEVKS--------SDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKR 213

Query: 176 TAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGK 230
           + E      L    VY        N       V+       G  + L    SP + +F  
Sbjct: 214 SVEVC---WLDHSTVYLAALPMAHNYPLSSPGVL--GVLYAGGRVVLSPSPSP-DDAF-P 266

Query: 231 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 290
            ++   VT+   VP L   W +       D + ++     G  +    +     KA +  
Sbjct: 267 LIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGG--AKFSAEAARRVKAVFGC 324

Query: 291 IIESC-GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL--DECGVPYPDDQPC-VGE 346
            ++   G  E       G +   +          T G  +   DE  V    D+    GE
Sbjct: 325 TLQQVFGMAE-------GLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE 377

Query: 347 VGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGM------CLRRHG-----DIIKRTV 392
            G                   +  RG   +  Y              G     DI++ T 
Sbjct: 378 TG------------------HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR 419

Query: 393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFV 451
            GYI+V+GRA D +N GG K ++ E+E     A  ++ + A +S+     G  E   +F+
Sbjct: 420 DGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMVSMPDQFLG--ERSCVFI 476

Query: 452 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKH 510
           + +       +    +  + + +     +K+   V+ V  FP+T   K+ ++ LR+ I  
Sbjct: 477 IPRDEAPKAAELKAFLRERGLAA-----YKIPDRVEFVESFPQTGVGKVSKKALREAISE 531

Query: 511 ELS 513
           +L 
Sbjct: 532 KLL 534

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  132 bits (335), Expect = 3e-33
 Identities = 109/554 (19%), Positives = 179/554 (32%), Gaps = 108/554 (19%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL +    +A +L       G+   + +       I + A++  G   V    S  
Sbjct: 51  LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
             E+       +   +           +  L+S              +I     +     
Sbjct: 111 RSELNAYASQIEPALLIADR-------QHALFSGDDFLNTFVT-EHSSIRVVQLLN---- 158

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
           D    +   ++++       +P   P D V     S GTTG PK IP T      S+R +
Sbjct: 159 DSGEHNLQDAINHPAEDFTATPS--PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRS 216

Query: 177 AEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKF 231
            E            Y        N      P  L   FL G T+ L    S     F   
Sbjct: 217 VEIC---QFTQQTRYLCAIPAAHNYAMSS-PGSL-GVFLAGGTVVLAADPSA-TLCF-PL 269

Query: 232 VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS-KAWYNA 290
           ++   V V   VP  V  W                 A     S       L+S K     
Sbjct: 270 IEKHQVNVTALVPPAVSLWLQ---------------ALIEGESRAQ----LASLKLLQ-- 308

Query: 291 IIESCGGTELSSAYIQ------GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 344
                GG  LS+          G  LQ Q FG      M  GLV            +  +
Sbjct: 309 ----VGGARLSATLAARIPAEIGCQLQ-QVFG------MAEGLVN---YTRLDDSAEKII 354

Query: 345 GEVGLFPLYLGASDRLLNADHEEV------------------YFRGMPMYKGMCLRRHG- 385
              G  P+       + +A+   +                  Y++  P +       +G 
Sbjct: 355 HTQGY-PMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYK-SPQHNASAFDANGF 412

Query: 386 ----DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPA 440
               D+I     GYI VQGR  D +N GG K ++ EIE +      +++  A +S+    
Sbjct: 413 YCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDEL 471

Query: 441 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKL 499
            G  E    ++V+K+       +++    + ++ +    FK+   V+ V   P TA  K+
Sbjct: 472 MG--EKSCAYLVVKEPLR--AVQVR----RFLREQGIAEFKLPDRVECVDSLPLTAVGKV 523

Query: 500 LRRVLRDQIKHELS 513
            ++ LR  +    S
Sbjct: 524 DKKQLRQWLASRAS 537

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  116 bits (294), Expect = 3e-28
 Identities = 90/541 (16%), Positives = 172/541 (31%), Gaps = 99/541 (18%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
            TY+ L  +  L+A  L     +   + + +  +++++I+  A  LA   +  I      
Sbjct: 27  YTYQNLYCEASLLAKRL--KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTP 84

Query: 61  REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV-GIPLREQ 119
            E+  ++R    + IF            PL  +      L  I          G+     
Sbjct: 85  NEMTNQMRSIDVQLIFCTL---------PLELRGFQIVSLDDIEFAGRDITTNGLLDNTM 135

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
            + +     +V     P+        +D + +I+F+SGTTG  KA+P T  +        
Sbjct: 136 GIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGC 195

Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 239
              +       +     +  + G  +L  + + G T+ +      E+     +++  +T 
Sbjct: 196 KESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQIL-TMIKNERITH 254

Query: 240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 299
           +  VP  +            +   ++     G  + +   +  ++  +   I  S G TE
Sbjct: 255 ISLVPQTLNWLMQQ---GLHEPYNLQKILLGG--AKLSATMIETALQYNLPIYNSFGMTE 309

Query: 300 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP-------DDQPCVGEVGLFPL 352
             S   Q     P+                 D  G+P         +        G    
Sbjct: 310 TCS---QFLTATPE-----------MLHARPDTVGMPSANVDVKIKNPNK--EGHG---- 349

Query: 353 YLGASDRLLNADHEEVYFRG---MPMYKGMCLRR------------H-GDIIKRTVGGYI 396
                         E+  +G   M  Y    L              + GDI +    GY+
Sbjct: 350 --------------ELMIKGANVMNGY----LYPTDLTGTFENGYFNTGDIAEIDHEGYV 391

Query: 397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFV 451
           ++  R  D +  GG      +IE V  Q    I +   +      G P     +V  ++ 
Sbjct: 392 MIYDRRKDLIISGGENIYPYQIETVAKQ-FPGISDAVCV------GHPDDTWGQVPKLYF 444

Query: 452 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKH 510
           V +   +    +L   +       L   +KV    + V   P T++ KL R  L  +  H
Sbjct: 445 VSESDIS--KAQLIA-YLSK---HLAK-YKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497

Query: 511 E 511
            
Sbjct: 498 H 498

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  109 bits (276), Expect = 9e-26
 Identities = 47/279 (16%), Positives = 87/279 (31%), Gaps = 25/279 (8%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            +Y E  E+   +  AL          IA+         I  +A +  G  V    + + 
Sbjct: 53  YSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYT 112

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            RE+   L +SK   +F+               KV+        +   +  D        
Sbjct: 113 LRELVHSLGISKPTIVFSSK---------KGLDKVITVQKTVTTIKTIVILD-SKVDYRG 162

Query: 120 DLSWKDFLS--SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIR 174
                 F+   +       ++ +   +  + V  I+ SSG+TG PK +  T    ++   
Sbjct: 163 YQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFS 222

Query: 175 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER----SFGK 230
              +      +  G             G        + G  + +     L +    +F K
Sbjct: 223 HARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM-----LTKFDEETFLK 277

Query: 231 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 269
            +QD   T +  VP+L      +  L   D + +   AS
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIAS 316

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 427 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--S 483
            SI +     V  P  G  E+    VVL+ G      ++       + S+++   K    
Sbjct: 464 PSIFDAGVAGVPDPVAG--ELPGAVVVLESGKNMTEKEVM----DYVASQVSN-AKRLRG 516

Query: 484 LVKVVPEFPRTASNKLLRRVLRDQIKHELS 513
            V+ V E P+  + K+  R +R+ +K  ++
Sbjct: 517 GVRFVDEVPKGLTGKIDGRAIREILKKPVA 546

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  109 bits (274), Expect = 1e-25
 Identities = 44/284 (15%), Positives = 91/284 (32%), Gaps = 35/284 (12%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY E  E  + +A A+     +    I +    +++  +  L  +  G  V    D + 
Sbjct: 51  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDVGI 114
            RE+   + +S+   +F                K+L          K I++ +  +  G 
Sbjct: 111 ERELLNSMNISQPTVVFVSK---------KGLQKILNVQKKLPIIQKIIIMDSKTDYQGF 161

Query: 115 PLREQDLSWKDFLSSVD--YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--- 169
                  S   F++S         ++    ++    +  I+ SSG+TG PK +       
Sbjct: 162 Q------SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTA 215

Query: 170 LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER--- 226
                   +      +                G        + G  + L     + R   
Sbjct: 216 CVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL-----MYRFEE 270

Query: 227 -SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 269
             F + +QD  +     VP+L   +  +  ++  D + +   AS
Sbjct: 271 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 314

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 427 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--S 483
            +I +     +     G  E+    VVL+ G T    ++       + S++    K    
Sbjct: 462 PNIFDAGVAGLPDDDAG--ELPAAVVVLEHGKTMTEKEIV----DYVASQVTT-AKKLRG 514

Query: 484 LVKVVPEFPRTASNKLLRRVLRDQIKHELS 513
            V  V E P+  + KL  R +R+ +     
Sbjct: 515 GVVFVDEVPKGLTGKLDARKIREILIKAKK 544

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  108 bits (273), Expect = 2e-25
 Identities = 106/548 (19%), Positives = 172/548 (31%), Gaps = 122/548 (22%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           MTY ++       A+ L  +  +KGD +A+ MP +V    ++      G V V I    A
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A E++  L  S +K +             P+   +   A     V   IG D        
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWIGAD-------- 149

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
             S  + L S                 D  + I+++SGTTG PK +  T  S     +  
Sbjct: 150 --SLAERLRSAAADEPAVECGG-----DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSW 202

Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATLALYQGSP--LERSFG-----KF 231
            + ID++  D          +  P  +F    L     +  +G        F        
Sbjct: 203 ASTIDVRYRDRLL-------LPLP--MFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL 253

Query: 232 VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 291
           + +  V + G VP+++   R       LD    R F + G  + + + L     A    +
Sbjct: 254 IVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG--APMPEALIKIYAAKNIEV 311

Query: 292 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP---------DDQP 342
           ++    TE       G+LL  +             L      G             D   
Sbjct: 312 VQGYALTESCGG---GTLLLSE-----------DALRKAGSAGRATMFTDVAVRGDDGVI 357

Query: 343 CVGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGMCLRR-------------H-G 385
                G                  EV  +    +  Y      R               G
Sbjct: 358 REHGEG------------------EVVIKSDILLKEY----WNRPEATRDAFDNGWFRTG 395

Query: 386 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP- 444
           DI +    GY+ ++ R  D +  GG      EIE V       + E A I +      P 
Sbjct: 396 DIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPG-VSEVAVIGL------PD 448

Query: 445 ----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKL 499
               E+    VV  +       ++   +      +L   +K+   V      PR  + K+
Sbjct: 449 EKWGEIAAAIVVADQN-EVSEQQIVE-YCGT---RLAR-YKLPKKVIFAEAIPRNPTGKI 502

Query: 500 LRRVLRDQ 507
           L+ VLR+Q
Sbjct: 503 LKTVLREQ 510

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  106 bits (267), Expect = 1e-24
 Identities = 83/538 (15%), Positives = 153/538 (28%), Gaps = 102/538 (18%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +T+++   +   +A+ L       GD +AI        + +  A+ L G +++ +     
Sbjct: 32  LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           A EIA  L       +              + + VL +                  + + 
Sbjct: 92  ADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKA---------YAIGDG 136

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
              +  F       P                 I+ ++   G P+    +Q + +   +  
Sbjct: 137 SGPFAPFKDLASDTPFS----APEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL 192

Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFG-----KFVQD 234
                L   DV      L  V G  ++ +    G          +   F      + ++ 
Sbjct: 193 VDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASV------IAAKFDPAQAARDIEA 246

Query: 235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG--ETSNVDDDLWLSSKAWYNA-I 291
             VTV+     ++      +         +R+       ET      +        NA  
Sbjct: 247 HKVTVMAEFAPML--GNILDQAAPAQLASLRAVTGLDTPET------IERFEATCPNATF 298

Query: 292 IESCGGTELSSAYIQGSLLQPQA-FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 350
             + G +E S      +    +    +         + ++D    P P      GEVG  
Sbjct: 299 WATFGQSETSGL---STFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLP-----PGEVG-- 348

Query: 351 PLYLGASDRLLNADHEEVYFRG---MPMYKGM------CLR----RHGDIIKRTVGGYII 397
                           E+  RG      Y           R      GD+ +    GY+ 
Sbjct: 349 ----------------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLF 392

Query: 398 VQGRAD--DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIF 450
             GRA   + +  GG      E+E    Q   +I +   I V      P     E +   
Sbjct: 393 YAGRAPEKELIKTGGENVYPAEVEGALKQ-HPAIADAVVIGV------PDPQWSEAIKAV 445

Query: 451 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQ 507
            V K G +   D L   F  +    +   +K    V  V   P+ A   + R  ++  
Sbjct: 446 CVCKPGESIAADAL-AEFVAS---LIAR-YKKPKHVVFVEALPKDAKGAIDRAAVKTA 498

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  103 bits (259), Expect = 2e-23
 Identities = 53/266 (19%), Positives = 94/266 (35%), Gaps = 40/266 (15%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY ++      +A     +  ++ D + + +P     V+ +LA    G    +    F 
Sbjct: 89  YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
             EIA + + S  K I T+              K+        +V+  I ++  +P+ E 
Sbjct: 149 PAEIAKQAKASNTKLIITEA---------RYVDKIKPLQNDDGVVIVCIDDNESVPIPEG 199

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
            L + +   S            V    D VV + +SSGTTG PK +  T    ++S+   
Sbjct: 200 CLRFTELTQSTT--EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQ 257

Query: 177 AEGWA-HIDLKVGDVYCWPTNLGW-----VMGPVILFSSFLNGATLALYQGSPL------ 224
            +G   ++     DV      L       +       +S +      L  G+ +      
Sbjct: 258 VDGENPNLYFHSDDVI-----LCVLPMFHIYA----LNSIMLC---GLRVGAAILIMPKF 305

Query: 225 -ERSFGKFVQDAGVTVLGTVPSLVKA 249
                 + +Q   VTV   VP +V A
Sbjct: 306 EINLLLELIQRCKVTVAPMVPPIVLA 331

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 427 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK 486
             I + A +++     G EV V FVV  K      D +K    + +  ++    +++ V 
Sbjct: 504 PDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSEDDVK----QFVSKQVVFYKRINKVF 558

Query: 487 VVPEFPRTASNKLLRRVLRDQIKHE 511
                P+  S K+LR+ LR ++ + 
Sbjct: 559 FTESIPKAPSGKILRKDLRAKLANG 583

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  101 bits (254), Expect = 4e-23
 Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 40/280 (14%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           M + E+ E    +A+ +      KG+ + + +P ++  V+   A+       V I   + 
Sbjct: 53  MNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYK 112

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           + E+   L  S+A  +     +         +  VL    ++ + +             +
Sbjct: 113 SFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GE 156

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
             S  + + S       ++ +   NP + V  I ++ GTTG PK +  T  +      + 
Sbjct: 157 VNSLSEVMDS----GSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQL 212

Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATLALYQGSPL-------ERSFGKF 231
                L   D          ++G + +F S       L +  G+         +    + 
Sbjct: 213 AVATGLSHMDT---------IVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN 263

Query: 232 VQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAS 269
           ++    T    VP  +    NT     +  DW+ ++ FA+
Sbjct: 264 IEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFAT 303

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 8/127 (6%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 443
           GD+      G++  Q R  + +   G   +  E+E +     E++++ A I       G 
Sbjct: 421 GDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALL-MKHEAVMDVAVIGKPDEEAG- 478

Query: 444 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 502
            EV   F+VLK  +  + D+  +I  + ++ +++  +K    V+ V E PRTAS KLLRR
Sbjct: 479 -EVPKAFIVLKPEYRGKVDEEDII--EWVRERISG-YKRVREVEFVEELPRTASGKLLRR 534

Query: 503 VLRDQIK 509
           +LR++  
Sbjct: 535 LLREKEA 541

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score =  100 bits (251), Expect = 2e-22
 Identities = 77/331 (23%), Positives = 131/331 (39%), Gaps = 75/331 (22%)

Query: 1   MTYKELREQVMLVANALDTMF--SKGDAIAIDMPMTVRAVIIYLA---------IILAGY 49
           +TYKEL E+V  VA  L       KGD +A+ MPM   A+I  LA         ++ AG 
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAG- 172

Query: 50  VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIV 104
                   F++  +  R+    +K + T D   RGG+       V   L   P     +V
Sbjct: 173 --------FSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV 224

Query: 105 LPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGE 161
                N   +     +DL W              YY     PVD+   + +L++SG+TG 
Sbjct: 225 YRKTNNP-SVAFHAPRDLDWATEKKKY-----KTYYPCT--PVDSEDPLFLLYTSGSTGA 276

Query: 162 PKAIPWTQLSSIRCTAEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSF 210
           PK +  +       TA G    A +      D    DV+ +   ++GW+ G   +++   
Sbjct: 277 PKGVQHS-------TA-GYLLGALLTMRYTFDTHQEDVF-FTAGDIGWITGHTYVVYGPL 327

Query: 211 LNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK---- 263
           L G    +++G+P   ++ ++   + +  VT     P+ ++  +      G  + +    
Sbjct: 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKR----AGDSYIENHSL 383

Query: 264 --IRSFASTGETSNVDDDLWLSSKAWYNAII 292
             +R   S GE      ++W     WY+  I
Sbjct: 384 KSLRCLGSVGEPIA--AEVWE----WYSEKI 408

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 26/164 (15%)

Query: 364 DHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 420
           +H+   + Y      Y G      GD   +   GYI + GR DD +N+ G + S+ EIE 
Sbjct: 489 NHDRYLDTYL---NPYPGYYFT--GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEA 543

Query: 421 VCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQP------DKLKMIFS 469
                D  + E A +      G       + +  FVVLK   +           +K    
Sbjct: 544 AII-EDPIVAECAVV------GFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLV 596

Query: 470 KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513
             ++  + P     L+ +V + P+T S K++RR+LR  +  E  
Sbjct: 597 FTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESD 640

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 98.8 bits (247), Expect = 4e-22
 Identities = 55/272 (20%), Positives = 89/272 (32%), Gaps = 33/272 (12%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y EL      +A  L      KGD   + +P      I++ A++ AG VV++   S  
Sbjct: 56  LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
             E+   ++  + K +           +  ++S       L   V  +    + +  +  
Sbjct: 116 QYELNAFIKQIQPKLLIGSR-------QHEVFSNNQFIDSLHD-VNLSPEIILMLNHQAT 167

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
           D    D++ +    P   +      P D V     S G+TG PK IP T      S+R +
Sbjct: 168 DFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRAS 223

Query: 177 AEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKF 231
           AE      L              N                G  + +     P    F   
Sbjct: 224 AEIC---GLNSNTRLLCALPAPHNFMLSSP--GALGVLHAGGCVVMAPNPEP-LNCF-SI 276

Query: 232 VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 263
           +Q   V +   VPS V  W     LE     K
Sbjct: 277 IQRHQVNMASLVPSAVIMW-----LEKAAQYK 303

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 64.5 bits (158), Expect = 4e-11
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 443
           GD+++RT  G + V GR  D +N GG K +S EIE++       ++  A +++     G 
Sbjct: 421 GDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLI-LLHPEVMHAALVAIVDEQFG- 478

Query: 444 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 502
            E    F+V +         L+    +   ++    +K+   +K++   P TA  K+ ++
Sbjct: 479 -EKSCAFIVSRNPELKAVV-LRRHLMELGIAQ----YKLPDQIKLIESLPLTAVGKVDKK 532

Query: 503 VLRDQIKHELS 513
            LR  +    +
Sbjct: 533 QLRSILNTSTT 543

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 94.5 bits (236), Expect = 9e-21
 Identities = 53/287 (18%), Positives = 107/287 (37%), Gaps = 50/287 (17%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY ++      VA+ L+ +   +GD I + +P +   V+ +L     G ++ +      
Sbjct: 50  YTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFST 109

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPL 116
             E+A   + S+AK + TQ            Y KV   A    +K + + +  +      
Sbjct: 110 PAELAKHAKASRAKLLITQA---------CYYEKVKDFARESDVKVMCVDSAPDGC---- 156

Query: 117 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSI 173
               L + +   + +            +P D V  + +SSGTTG PK +  T    ++S+
Sbjct: 157 ----LHFSELTQADENEAPQ----VDISPDDVVA-LPYSSGTTGLPKGVMLTHKGLITSV 207

Query: 174 RCTAEGWA-HIDLKVGDVYCWPTNLGW-----VMG-PVILFSSFLNGATLALYQGSPLER 226
               +G   ++     DV      L       +     I+      GA + +     + +
Sbjct: 208 AQQVDGDNPNLYFHSEDVI-----LCVLPMFHIYALNSIMLCGLRVGAPILI-----MPK 257

Query: 227 ----SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 269
               S    ++   V++   VP ++ +   +  L+  D + +R   S
Sbjct: 258 FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKS 304

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 427 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 485
             I + A + +     G  EV V FVV  +   +  D++K    + I  ++    ++  V
Sbjct: 457 PEISDAAVVGLKDEDAG--EVPVAFVVKSEKSQATEDEIK----QYISKQVIFYKRIKRV 510

Query: 486 KVVPEFPRTASNKLLRRVLRDQIK 509
             +   P+  S K+LR+ L++++ 
Sbjct: 511 FFIEAIPKAPSGKILRKNLKEKLA 534

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 84.6 bits (210), Expect = 1e-17
 Identities = 51/280 (18%), Positives = 87/280 (31%), Gaps = 44/280 (15%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y EL  +   VAN L       GD +A     +V A+++YLA + AG V + +  ++ 
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
             E+   +  ++ K +           K    + +          L   G          
Sbjct: 89  LHELDYFITDAEPKIVVCDP------SKRDGIAAIAAKVGATVETLGPDG---------- 132

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
             S  D  +                  D +  IL++SGTTG  K    +     S+    
Sbjct: 133 RGSLTDAAAGASEAFATIDRGA-----DDLAAILYTSGTTGRSKGAMLSHDNLASNSLTL 187

Query: 177 AEGWAHIDLKVGDVYCWPTNL----GWVMGPVILFSSFLNGATLALYQGSPLERSF--GK 230
            + W        DV      +    G  +       +     ++           F   K
Sbjct: 188 VDYW---RFTPDDVLIHALPIYHTHGLFVA---SNVTLFARGSMI------FLPKFDPDK 235

Query: 231 FVQD-AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 269
            +   A  TVL  VP+       +  L       +R F S
Sbjct: 236 ILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHMRLFIS 275

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 443
           GD+ K    GY+ + GR  D +  GG      EIE   D     ++E+A I V     G 
Sbjct: 381 GDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA-MPGVVESAVIGVPHADFG- 438

Query: 444 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 502
            E +   VV  KG T    ++       +  +L   FK+   V  V + PR    K+ + 
Sbjct: 439 -EGVTAVVVRDKGATIDEAQVL----HGLDGQLAK-FKMPKKVIFVDDLPRNTMGKVQKN 492

Query: 503 VLRDQIKH 510
           VLR+  K 
Sbjct: 493 VLRETYKD 500

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 72.6 bits (179), Expect = 9e-14
 Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 37/252 (14%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +T+ ELR +V  VA  L          +A+  P +   VI  LA+   G V   +     
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           + E+A  ++  +                  +   +  +     I+         +    +
Sbjct: 90  SAELAELIKRGEMTAAVIAV-------GRQVADAIFQSGSGARIIFLG-----DLVRDGE 137

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
             S+   +      P                 I ++SGTTG PKA    Q ++       
Sbjct: 138 PYSYGPPIEDPQREP------------AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185

Query: 180 WAHIDLKVG--DVYCWPTNL----GWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFV 232
              + L+ G  +V      L    G+      L ++     T  + +   P++    + V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAV---LVAALALDGTYVVVEEFRPVD--ALQLV 240

Query: 233 QDAGVTVLGTVP 244
           Q   VT L   P
Sbjct: 241 QQEQVTSLFATP 252

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 17/129 (13%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 444
            D+   T  G + + GR DD +  GG      EIERV   A   + E   I +       
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTA-PGVTEVVVIGL------A 436

Query: 445 -----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNK 498
                + +   VV + G T   D L   F ++  S+L   FK      ++ + P+ A NK
Sbjct: 437 DQRWGQSVTACVVPRLGETLSADALDT-FCRS--SELAD-FKRPKRYFILDQLPKNALNK 492

Query: 499 LLRRVLRDQ 507
           +LRR L  Q
Sbjct: 493 VLRRQLVQQ 501

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 69.6 bits (171), Expect = 8e-13
 Identities = 39/226 (17%), Positives = 68/226 (30%), Gaps = 55/226 (24%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 60
           +TY EL       A  +         +A+     +   +  +A +LAG   V +      
Sbjct: 49  LTYAELAAAAGATAGRI----GGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGD 104

Query: 61  REIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           +E+A  L  S    +    D  L            LGA     + + A G        + 
Sbjct: 105 KELAHILSDSAPSLVLAPPDAELPPA---------LGALERVDVDVRARGAVPEDGADDG 155

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
           D +                             ++++SGTTG PK     +    +++   
Sbjct: 156 DPAL----------------------------VVYTSGTTGPPKGAVIPRRALATTLDAL 187

Query: 177 AEGWAHIDLKVGDVYCWPTNL----GWVMGPVILFSSFLNGATLAL 218
           A+ W        DV      L    G V+G   +      G ++  
Sbjct: 188 ADAW---QWTGEDVLVQGLPLFHVHGLVLG---ILGPLRRGGSVRH 227

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 53.8 bits (130), Expect = 7e-08
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 385 GDIIKRTVGGYIIVQGRAD-DTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGG 442
           GD+  R   GY+ + GR   D +  GG K  + EIE         + E A      P  G
Sbjct: 387 GDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEPDPDLG 445

Query: 443 GPEVLVIFVVLKK-GFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLL 500
             E +V ++V            L       + ++L P  K   +V+ +   PR    K++
Sbjct: 446 --ERIVAWIVPADPAAPPALGTLA----DHVAARLAP-HKRPRVVRYLDAVPRNDMGKIM 498

Query: 501 RRVLRD 506
           +R L  
Sbjct: 499 KRALNR 504

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 50/261 (19%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY E+ ++   +   L  +    GD +A       R +  Y A+   G V+ +     +
Sbjct: 48  TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLS 107

Query: 60  AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLR 117
            +EIA  L  ++ K +    + +       PL   + G    ++  V       +     
Sbjct: 108 PKEIAYILNHAEDKVLLFDPNLL-------PLVEAIRGELKTVQHFV------VMDEKAP 154

Query: 118 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSI 173
           E  L++++ L       R         P  A   + +++GTTG PK + ++     L S+
Sbjct: 155 EGYLAYEEALGEEADPVRV--------PERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206

Query: 174 R-CTAEGWAHIDLKVGDVYCWPT-----NLGWVMGPVILFSSFLNGATLAL----YQGSP 223
                +G A   L   DV          N  W + P   +++ L GA   L       + 
Sbjct: 207 AASLVDGTA---LSEKDVVLPVVPMFHVN-AWCL-P---YAATLVGAKQVLPGPRLDPAS 258

Query: 224 LERSFGKFVQDAGVTVLGTVP 244
           L           GVT    VP
Sbjct: 259 LVE----LFDGEGVTFTAGVP 275

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 28/136 (20%)

Query: 385 GDIIKRTVGGYIIVQGRADDTMNLGGIKT-----SSVEIERVCDQADESILETAAISVSP 439
           GDI      GY+ ++ R  D      IK+     SSV++E         + E A +++  
Sbjct: 417 GDIAVWDEEGYVEIKDRLKDL-----IKSGGEWISSVDLENAL-MGHPKVKEAAVVAI-- 468

Query: 440 AGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPR 493
               P     E  +  VV +    +  +  + +            +++        E PR
Sbjct: 469 ----PHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGF-----AKWQLPDAYVFAEEIPR 519

Query: 494 TASNKLLRRVLRDQIK 509
           T++ K L+R LR+Q K
Sbjct: 520 TSAGKFLKRALREQYK 535

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 10/122 (8%)

Query: 392 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVI 449
               + V GR  D + + G      +IE     +    +  + AA  +         L +
Sbjct: 447 HENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHE--YKLTV 504

Query: 450 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP----EFPRTASNKLLRRVLR 505
              +K  F     +  +     I   +    ++ +  +V       P T S K+ R   R
Sbjct: 505 MCEVKNRFMDDVAQDNLF--NEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCR 562

Query: 506 DQ 507
             
Sbjct: 563 KH 564

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 28/190 (14%), Positives = 65/190 (34%), Gaps = 33/190 (17%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA---- 55
           MTY++L +    +A  L       GD + +     +  +  +L  + AG + V I     
Sbjct: 41  MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100

Query: 56  DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 115
           +    +     +  SK   +      ++        +  L   P K + +PAI  +    
Sbjct: 101 EKLLDK-AQRIVTNSKPVIVLMIADHIKK-----FTADELNTNP-KFLKIPAIALE---- 149

Query: 116 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSS 172
                        S++ +   ++        + +  + ++SG+T  PK +  +    L +
Sbjct: 150 -------------SIELNRSSSWQPTSIKS-NDIAFLQYTSGSTMHPKGVMVSHHNLLDN 195

Query: 173 IRCTAEGWAH 182
           +      +  
Sbjct: 196 LNKIFTSFHM 205

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 31/188 (16%)

Query: 1   MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA--DSF 58
           +T+ +L  + + VA  L    S GD + I  P  +  V+ +L  + AG + V ++     
Sbjct: 59  LTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGG 118

Query: 59  AARE-IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR 117
              E   + L  S    I T    +    +    ++  G +P   I +  +  D      
Sbjct: 119 VTDERSDSVLSDSSPVAILTTSSAVDDVVQH--VARRPGESPPSIIEVDLLDLDAP---- 172

Query: 118 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIR 174
                                         +   + ++SG+T  P  +  +      +  
Sbjct: 173 ---------NGYTFKEDEY----------PSTAYLQYTSGSTRTPAGVVMSHQNVRVNFE 213

Query: 175 CTAEGWAH 182
               G+  
Sbjct: 214 QLMSGYFA 221

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 76/400 (19%), Positives = 132/400 (33%), Gaps = 94/400 (23%)

Query: 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----DLKVGDVYCWPTNLGWV 200
           P + VV +  SSGTTG+P  + +T    I   A   A        + GD        G  
Sbjct: 90  PREQVVRVHASSGTTGKPTVVGYTA-RDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF 148

Query: 201 MGPVILFSSFLN-GATLALYQGSPLERSFGKFVQDAGVTVLGTVPS----LVKAWRNTNC 255
            G + +       G  +    G   E+   + ++D    ++   PS    L+        
Sbjct: 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQV-QLIRDFEPKIILVTPSYMLNLIDEMVR--- 204

Query: 256 LEGLDW--TKIRSFASTGETSNVDDDLWLSSKAWYNAI---IESCGGTELSSAYIQGSLL 310
            +G+D   + ++      E              W  A+   +E+  G +    Y    ++
Sbjct: 205 -QGMDPAESSLKIGIFGAE-------------PWTQALRNEVETRVGIDALDIYGLSEVM 250

Query: 311 QPQAFGAFSTATMTAGLV---------ILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRL 360
            P    A        G V         I+D   G   PD     G  G            
Sbjct: 251 GP--GVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPD-----GSQG------------ 291

Query: 361 LNADHEEVY----FRGMPMYKGMCLR-RHGDIIK---------RTVGGYIIVQGRADDTM 406
                E V+       MP+     +R R  D+           R +     + GR+DD +
Sbjct: 292 -----ELVFTSLTKEAMPV-----IRYRTRDLTALLPPTARAMRRLAK---ITGRSDDML 338

Query: 407 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 466
            + G+     +IE +       +     I++S  G    + +   +  +   S  D  + 
Sbjct: 339 IVRGVNVFPSQIEEIVVALPL-LSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERA 397

Query: 467 IFSKAIQSKLNPLFKVSL-VKVVP--EFPRTASNKLLRRV 503
             ++ +Q ++  +  VS  V V+     P TA+ K  RRV
Sbjct: 398 ALARELQHRIKTMVGVSSGVTVLAAGGIPATATGK-ARRV 436

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 58/443 (13%), Positives = 123/443 (27%), Gaps = 134/443 (30%)

Query: 118 EQDLSWKD--------FLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP-KAIPWT 168
           E    +KD        F+ + D     +    + +     ++ +  S         + WT
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWT 70

Query: 169 QLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-----------ILFSSFLNGATLA 217
            LS      + +      V +V     N  ++M P+            ++    +     
Sbjct: 71  LLSKQEEMVQKF------VEEVL--RINYKFLMSPIKTEQRQPSMMTRMYIEQRD----R 118

Query: 218 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD---WTKIRSFASTGETS 274
           LY  + +   F K+           V  L    +    L  L       I     +G+T 
Sbjct: 119 LYNDNQV---FAKY----------NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT- 164

Query: 275 NVDDDLWLSSKAWYNAIIESCGGTE---LSSAYIQ--GSLLQP-QAFGAFSTATMTAGLV 328
                 W++     +  ++     +   L+        ++L+  Q             L 
Sbjct: 165 ------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-----------LY 207

Query: 329 ILDECGVPYPDDQPCVGEVGLFPLYLG-ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI 387
            +D       D    +       L +      L      + Y          CL      
Sbjct: 208 QIDPNWTSRSDHSSNI------KLRIHSIQAELRRLLKSKPYEN--------CL------ 247

Query: 388 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 447
                   +++     +  N       ++     C    + +L T    V+         
Sbjct: 248 --------LVL----LNVQNAKAWNAFNLS----C----KILLTTRFKQVTDFLSAATTT 287

Query: 448 VIFVV-LKKGFTSQPDKLKMIFSKAIQSKL----------NPLFKVSLV-KVVPEFPRTA 495
            I +       T  PD++K +  K +  +           NP  ++S++ + + +   T 
Sbjct: 288 HISLDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATW 344

Query: 496 SNKLLRRVLRDQIKH--ELSVRS 516
            N   + V  D++    E S+  
Sbjct: 345 DN--WKHVNCDKLTTIIESSLNV 365

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 75/388 (19%), Positives = 125/388 (32%), Gaps = 89/388 (22%)

Query: 145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----DLKVGDVYCWPTNLGWV 200
           P D +  I  SSGTTG+P  + +T  + I   A   A        + GD        G  
Sbjct: 88  PQDRISRIHASSGTTGKPTVVGYTA-ADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146

Query: 201 MGPVILFSSFLN-GATLALYQGSPLERSFGKFVQDAGVTVLGTVPS----LVKAWRNTNC 255
            G +         G T+  + G   E+   + +QD    ++   PS    +         
Sbjct: 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQV-QLIQDFRPDIIMVTPSYMLSIADEIER--- 202

Query: 256 LEGLDW--TKIRSFASTGETSNVDDDLWLSSKAWYNAI---IESCGGTELSSAYIQGSLL 310
            +GLD   + +R      E              W N +   IE   G +    Y    ++
Sbjct: 203 -QGLDPVQSSLRIGIFGAE-------------PWTNDMRVAIEQRMGIDAVDIYGLSEVM 248

Query: 311 QPQAFGAFSTATMTAGLVILDEC----------GVPYPDDQPCVGEVGLFPLYLGASDRL 360
            P    A        G  I ++           G   PD     GE+G            
Sbjct: 249 GPGV--ASECVETKDGPTIWEDHFYPEIIDPETGEVLPD-----GELG------------ 289

Query: 361 LNADHEEVY----FRGMPMYKGMCLR-RHGDIIK------RTVGGYIIVQGRADDTMNLG 409
                E V+       +P+     +R R  D+ +      RT+     + GR+DD M + 
Sbjct: 290 -----ELVFTSLTKEALPI-----IRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVR 339

Query: 410 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 469
           G+     +IE    +     L      V    G  +VL + V            +++   
Sbjct: 340 GVNVFPTQIEEQLLKQRA--LAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVA-K 396

Query: 470 KAIQSKLNPLFKVSL-VKVVP--EFPRT 494
           +A+   +  L  V+  + V+P     R+
Sbjct: 397 QALAYDIKSLIGVTAVINVLPVNGIERS 424

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	518
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.59
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.55
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.87
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.85
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.85
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	87.32
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	86.45
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	85.98

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=3.2e-75  Score=601.65  Aligned_cols=474  Identities=20%  Similarity=0.236  Sum_probs=395.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        50 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~  129 (536)
T 3ni2_A           50 YTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQA  129 (536)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECG
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEECh
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ..+...........+.+..        ...+...+.++......     ..+.....++++++++||||||
T Consensus       130 ~~~------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTT  190 (536)
T 3ni2_A          130 CYY------EKVKDFARESDVKVMCVDS--------APDGCLHFSELTQADEN-----EAPQVDISPDDVVALPYSSGTT  190 (536)
T ss_dssp             GGT------HHHHHHHHHHTCEEEESSC--------CCTTCEETHHHHTSCGG-----GCCCCCCCTTSEEECCEECTTS
T ss_pred             HHH------HHHHHHHhhcCceEEEecC--------CCCCccCHHHHhhcccc-----ccccCCCCccCEEEEEcCCCcc
Confidence            543      2222222222222222211        11233455555443221     1122334679999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccc----cccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQD  234 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~  234 (518)
                      |.||||+++|.+++.++.....    .+.+.++|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.+++
T Consensus       191 G~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~  269 (536)
T 3ni2_A          191 GLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP-KFEIGSLLGLIEK  269 (536)
T ss_dssp             SSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-SCCHHHHHHHHHH
T ss_pred             ccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-CCCHHHHHHHHHH
Confidence            9999999999999887654432    456789999999999999999966 889999999999987 5778999999999


Q ss_pred             cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCC----C
Q 010114          235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL----L  310 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~----~  310 (518)
                      +++|++.++|+++..+++.......++++||.+++|||++++++.+++.+.++++++++.||+||+++++..+..    .
T Consensus       270 ~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~  349 (536)
T 3ni2_A          270 YKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP  349 (536)
T ss_dssp             HTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSC
T ss_pred             hCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCcc
Confidence            999999999999999999887777889999999999999999999999998888999999999999976554421    2


Q ss_pred             CCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114          311 QPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII  388 (518)
Q Consensus       311 ~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~  388 (518)
                      .....+++|.|+++++++|+| ++|++++.|+  .|||++ ++.++.+|  +.+++.+...+      ..++||+|||+|
T Consensus       350 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~p~~t~~~~------~~~g~~~TGDl~  419 (536)
T 3ni2_A          350 FDIKPGACGTVVRNAEMKIVDPETGASLPRNQ--PGEICIRGDQIMKGY--LNDPEATSRTI------DKEGWLHTGDIG  419 (536)
T ss_dssp             CCCCTTCCCEECSSCEEEEECTTTCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEE
T ss_pred             ccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCC--ccEEEEeCcccchhh--cCChhHHHhhc------cCCCceEcccEE
Confidence            234668899999999999999 7799999999  699999 77777653  22333333333      356799999999


Q ss_pred             EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114          389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF  468 (518)
Q Consensus       389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~  468 (518)
                      ++|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+..++...+.++++++ 
T Consensus       420 ~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~-  496 (536)
T 3ni2_A          420 YIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLKDEDAG-EVPVAFVVKSEKSQATEDEIKQY-  496 (536)
T ss_dssp             EECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH-
T ss_pred             EEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeeecCCCC-ceeEEEEEecCCCCCCHHHHHHH-
Confidence            99999999999999999999999999999999997 9999999999999998888 89999999988766666665555 


Q ss_pred             HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                         ++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus       497 ---l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          497 ---ISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             ---HHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred             ---HHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence               678999999999999999999999999999999988753

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.3e-74  Score=592.15  Aligned_cols=470  Identities=21%  Similarity=0.219  Sum_probs=391.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus        29 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~  108 (503)
T 4fuq_A           29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDP  108 (503)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECG
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECc
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ................+...          ....+.+......     .........++++++++||||||
T Consensus       109 ~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTT  167 (503)
T 4fuq_A          109 SKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAGAS-----EAFATIDRGADDLAAILYTSGTT  167 (503)
T ss_dssp             GGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSC-----SCCCCCCCCTTSEEEEEECC--C
T ss_pred             hhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhcCC-----CCcCcCCCCCCCeEEEEECCCcc
Confidence            543      12222222111111111100          0011222111111     11222344679999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      |.||||+++|.++..+.......+++.++|++++.+|++|.+++.. .+.+++.|+++++.+ ..++..+++.++  ++|
T Consensus       168 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~--~~t  244 (503)
T 4fuq_A          168 GRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP-KFDPDKILDLMA--RAT  244 (503)
T ss_dssp             CSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS-SCCHHHHHHHHT--TCC
T ss_pred             cCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC-CCCHHHHHHHHh--hcC
Confidence            9999999999999999888888889999999999999999999765 778899999999887 578889999987  899


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCC
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF  318 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~  318 (518)
                      +++++|+++..+++.......+++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+. .........+++
T Consensus       245 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~  322 (503)
T 4fuq_A          245 VLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTS-NPYDGDRVPGAV  322 (503)
T ss_dssp             EEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBC-CCSSSCCCTTEE
T ss_pred             EEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccc-cCCCCCCcCCcc
Confidence            999999999999998877777889999999999999999999998776 678999999999987643 333344567889


Q ss_pred             CcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114          319 STATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  396 (518)
Q Consensus       319 g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  396 (518)
                      |+|+++++++|+| ++|++++.|+  .|||++ ++.++.+|  +.+++.+...|      ..++||+|||+|++|+||++
T Consensus       323 G~p~~~~~~~i~d~~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~~~TGDl~~~~~dG~l  392 (503)
T 4fuq_A          323 GPALPGVSARVTDPETGKELPRGD--IGMIEVKGPNVFKGY--WRMPEKTKSEF------RDDGFFITGDLGKIDERGYV  392 (503)
T ss_dssp             EEBCTTCEEEEECTTTCCBCCTTC--CEEEEEESTTSCCCB--TTCHHHHHHTB------CTTSCEEEEEEEEECTTCEE
T ss_pred             ccCCCCeEEEEEECCCCCCCcCCC--ceEEEEECCchhhhh--cCChhhhHhhh------CCCCCeEcceeEEEcCCCcE
Confidence            9999999999999 8999999999  699999 77777654  23333333333      34579999999999999999


Q ss_pred             EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      +++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+.++|+++++...+.+++.+.    ++++|
T Consensus       393 ~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~l~~~----l~~~L  466 (503)
T 4fuq_A          393 HILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVTAVVVRDKGATIDEAQVLHG----LDGQL  466 (503)
T ss_dssp             EECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH----HBTTB
T ss_pred             EEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeEEEEEeCCCCCCCHHHHHHH----HHhhc
Confidence            999999999999999999999999997 9999999999999998888 89999999988776676665555    77899


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      +.|++|..|+++++||+|++||++|++|++++++..
T Consensus       467 ~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~  502 (503)
T 4fuq_A          467 AKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIY  502 (503)
T ss_dssp             CGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred             ccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence            999999999999999999999999999999998654

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=2.8e-74  Score=606.34  Aligned_cols=495  Identities=25%  Similarity=0.362  Sum_probs=396.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|++|+++++|||+++|++++|+++.++++++.+++++++++++|+++
T Consensus       108 lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~  187 (652)
T 1pg4_A          108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD  187 (652)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCc---chhhhhccCC---Cc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           80 FILRGGRKFP---LYSKVLGAAP---LK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        80 ~~~~~~~~~~---~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      ......+..+   .+........   .. .+++......... .......|.+++.....     ...+....++++++|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i  261 (652)
T 1pg4_A          188 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQPEAMNAEDPLFI  261 (652)
T ss_dssp             EEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCCCCEETTSEEEE
T ss_pred             ccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCccccCCCCCEEE
Confidence            5432221111   1222222221   11 2222111111100 11123456676654322     112223456899999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhh-hccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERS  227 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~  227 (518)
                      +|||||||.||||+++|.+++.+.. .....+++.++|++++..|++|++|+.. ++.+|+.|+++++.+..   .++..
T Consensus       262 lyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~  341 (652)
T 1pg4_A          262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR  341 (652)
T ss_dssp             EEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTH
T ss_pred             EeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHH
Confidence            9999999999999999999877654 3334578899999999999999999854 88999999999998753   46889


Q ss_pred             HHHHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccc--cCceecccccccccee
Q 010114          228 FGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELSSA  303 (518)
Q Consensus       228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~  303 (518)
                      +++.|+++++|+++++|++++.|++...  ....++++||.++++||++++++.+++.+.++  .+++++.||+||+++.
T Consensus       342 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~  421 (652)
T 1pg4_A          342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGF  421 (652)
T ss_dssp             HHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSC
T ss_pred             HHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccc
Confidence            9999999999999999999999998754  34567899999999999999999999988764  2789999999999876


Q ss_pred             EeecCC-CCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-c--ccccCCccccccccccceeeeCCCCCCCc
Q 010114          304 YIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLLNADHEEVYFRGMPMYKGM  379 (518)
Q Consensus       304 ~~~~~~-~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (518)
                      ++.... ......+++|.|++|++++|+|++|++++.|+  .|||++ +  ++++.+|.  .+.+.+...+    +...+
T Consensus       422 ~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~--~GEl~i~g~~p~~~~gY~--~~~e~~~~~~----~~~~~  493 (652)
T 1pg4_A          422 MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT--EGNLVITDSWPGQARTLF--GDHERFEQTY----FSTFK  493 (652)
T ss_dssp             SBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCEET--TCHHHHHHHH----HSSST
T ss_pred             eecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCc--eEEEEEccCCCchhhhhc--CCHHHHHhhh----hhcCC
Confidence            554432 23456789999999999999999999999988  699999 5  34444322  1221111111    11235


Q ss_pred             eeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC
Q 010114          380 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS  459 (518)
Q Consensus       380 ~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~  459 (518)
                      +||+|||+|++|+||+|+++||.||+||++|++|+|.|||++|. +||+|.+++|++.+++..| +.+++||+++++...
T Consensus       494 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~Vv~~~~~~~  571 (652)
T 1pg4_A          494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEP  571 (652)
T ss_dssp             TSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCC
T ss_pred             CEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEEEEEECCCCCC
Confidence            69999999999999999999999999999999999999999997 9999999999999988888 899999999876543


Q ss_pred             ChhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          460 QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       460 ~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      + +++.+.++++++++|++|++|..|+++++||+|++||++|+.|++++.+++
T Consensus       572 ~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~  623 (652)
T 1pg4_A          572 S-PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT  623 (652)
T ss_dssp             C-HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred             C-HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence            3 456777888899999999999999999999999999999999999998764

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=2.1e-74  Score=597.17  Aligned_cols=481  Identities=19%  Similarity=0.185  Sum_probs=359.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus        53 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~  132 (549)
T 3g7s_A           53 MNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHS  132 (549)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEG
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEECh
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ..+...........++...          ....++.++........    .......++++++|+||||||
T Consensus       133 ~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~i~~TSGTT  192 (549)
T 3g7s_A          133 MLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSEDF----ENVKVNPEEDVALIPYTGGTT  192 (549)
T ss_dssp             GGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCSCC----CCCCCCTTTSEEECCEECCCC
T ss_pred             HHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCcccc----ccccCCCCCCEEEEEECCCcc
Confidence            543      2233333333322222211          12234555554433211    111122348999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      |.||||+++|.+++.++......+++.++|++++.+|++|.+++..++.++..|+++++.+ ..++..+++.|+++++|+
T Consensus       193 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~  271 (549)
T 3g7s_A          193 GMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTF  271 (549)
T ss_dssp             C-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCE
T ss_pred             CCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeE
Confidence            9999999999999999888878889999999999999999999888888999999999987 678899999999999999


Q ss_pred             EEechHHHHHHHhcccCCC--CCccchhhhhccCCCCCchhhhHhhhc----cc--cCceeccccccccceeEeecCCCC
Q 010114          240 LGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSK----AW--YNAIIESCGGTELSSAYIQGSLLQ  311 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~~Ge~l~~~~~~~~~~~----~~--~~~i~~~yg~tE~~~~~~~~~~~~  311 (518)
                      ++++|+++..|++......  .+++++|.+++||+++++++.+++.+.    +.  ..++++.||+||+++++.......
T Consensus       272 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~  351 (549)
T 3g7s_A          272 SWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR  351 (549)
T ss_dssp             EEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG
T ss_pred             EEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc
Confidence            9999999999988754443  678999999999999999999988766    42  278999999999998877766655


Q ss_pred             CcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEE
Q 010114          312 PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK  389 (518)
Q Consensus       312 ~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~  389 (518)
                      ....+++|.|+++++++|+| ++|++++.|+  .|||++ ++.++.+|  +.+++.+...|..+  .++.+||+|||+|+
T Consensus       352 ~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~~--~~g~~~~~TGDl~~  425 (549)
T 3g7s_A          352 LDKSTTQGVPMSDIELKVISLEDGRELGVGE--SGEIVIRGPNIFKGY--WKREKENQECWWYD--EKGRKFFRTGDVGF  425 (549)
T ss_dssp             GGGTTSCCEECTTCEEEEECSSSCCEECTTC--CEEEEEESTTSCSEE--TTCTTGGGTSEEEC--TTCCEEEEEEEEEE
T ss_pred             cCcCCCccccCCCCEEEEEeCCCCcCCCCCC--ceEEEEECcchhhhh--CCChhhhhhhhhcc--CCCCceEccCcEEE
Confidence            56778999999999999999 8999999999  699999 77776654  33444444443211  24566999999999


Q ss_pred             EecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCC--CCCChhHHHHH
Q 010114          390 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG--FTSQPDKLKMI  467 (518)
Q Consensus       390 ~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~--~~~~~~~l~~~  467 (518)
                      +|+||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+.++|+++++  ...+.++++++
T Consensus       426 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~l~~~  503 (549)
T 3g7s_A          426 IDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKPDEEAG-EVPKAFIVLKPEYRGKVDEEDIIEW  503 (549)
T ss_dssp             ECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECCCC-------CEEEEEECSTTTTSCCHHHHHHH
T ss_pred             EcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeEccccC-ceEEEEEEECCCccCcCCHHHHHHH
Confidence            9999999999999999999999999999999997 9999999999999998888 899999999876  34455555544


Q ss_pred             HHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          468 FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       468 ~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                          ++++|+.|++|..|+++++||+|++||++|++|++.+.++-..
T Consensus       504 ----l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~  546 (549)
T 3g7s_A          504 ----VRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH  546 (549)
T ss_dssp             ----HHTTCC-----CCCCEEEECC----------------------
T ss_pred             ----HHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccc
Confidence                7789999999999999999999999999999999998765433

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=5.9e-74  Score=593.04  Aligned_cols=484  Identities=19%  Similarity=0.182  Sum_probs=394.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus        53 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  132 (548)
T 2d1s_A           53 YSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSK  132 (548)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECT
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcH
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCC-CceeeccccccCCCCCCcccccchhhhhccCCCCCCC-CCCCCCCC-CCCCEEEEEecc
Q 010114           80 FILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP-NYYSPVYN-PVDAVVNILFSS  156 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~TS  156 (518)
                      ...      ..+....+..+ ...++.... ..    ...+...+.+++........+ ....+... .++++++++|||
T Consensus       133 ~~~------~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  201 (548)
T 2d1s_A          133 KGL------DKVITVQKTVTTIKTIVILDS-KV----DYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSS  201 (548)
T ss_dssp             TTH------HHHHHHHHHSTTCCEEEETTC-SS----CBTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCS
T ss_pred             HHH------HHHHHHhcCCCCCCEEEEeCC-cc----cccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCC
Confidence            532      22222222221 111221111 00    001223455555433210000 00110011 238999999999


Q ss_pred             CCCCCCceEEeccchhHHHhhhcccc---ccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHH
Q 010114          157 GTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFV  232 (518)
Q Consensus       157 GtTG~pK~v~~s~~~~~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i  232 (518)
                      ||||.||||+++|.++..++......   +++.++|++++.+|++|.+++.. ++.++ .|+++++.+ .+++..+++.|
T Consensus       202 GTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i  279 (548)
T 2d1s_A          202 GSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTL  279 (548)
T ss_dssp             SCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHH
T ss_pred             CCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHH
Confidence            99999999999999999887766555   67889999999999999999877 66777 999999987 56889999999


Q ss_pred             HHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCC
Q 010114          233 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP  312 (518)
Q Consensus       233 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~  312 (518)
                      +++++|+++++|+++..|.+.......+++++|.+++|||++++++.+++.+.++++++++.||+||++..+..... ..
T Consensus       280 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~  358 (548)
T 2d1s_A          280 QDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-GD  358 (548)
T ss_dssp             HHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TC
T ss_pred             HHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCc-cc
Confidence            99999999999999999998776666788999999999999999999999988877889999999999876655432 33


Q ss_pred             cccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEE
Q 010114          313 QAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR  390 (518)
Q Consensus       313 ~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~  390 (518)
                      ...+++|.|+++++++|+| ++|++++.|+  .|||++ ++.++.+|  +.+++.+...+      ..++||+|||+|++
T Consensus       359 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~~~TGDl~~~  428 (548)
T 2d1s_A          359 DKPGASGKVVPLFKAKVIDLDTKKSLGPNR--RGEVCVKGPMLMKGY--VNNPEATKELI------DEEGWLHTGDIGYY  428 (548)
T ss_dssp             CCTTCCBEECTTCEEEEECTTTCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEEEE
T ss_pred             CCCCCCCccCCCceEEEEeCCcCccCCCCC--CeEEEECCHHHhhhh--cCChHHhhhcc------cCCcEEEccCEEEE
Confidence            5678999999999999999 8999999999  699999 77666653  22333333333      24679999999999


Q ss_pred             ecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHH
Q 010114          391 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK  470 (518)
Q Consensus       391 ~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~  470 (518)
                      |+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+++++...+.+++.++   
T Consensus       429 ~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V~~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~---  503 (548)
T 2d1s_A          429 DEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGVAGVPDPVAG-ELPGAVVVLESGKNMTEKEVMDY---  503 (548)
T ss_dssp             CTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH---
T ss_pred             cCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEEcCCCC-eeeEEEEEEcCCCCCCHHHHHHH---
Confidence            999999999999999999999999999999998 9999999999999988888 89999999987665666555555   


Q ss_pred             HHHhccCCccccc-eEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          471 AIQSKLNPLFKVS-LVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       471 ~~~~~l~~~~~p~-~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                       ++++|+.|++|. .|+++++||+|++||++|++|++++++.++.
T Consensus       504 -~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~  547 (548)
T 2d1s_A          504 -VASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK  547 (548)
T ss_dssp             -HHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred             -HHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence             678999999998 9999999999999999999999999988763

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.5e-73  Score=592.66  Aligned_cols=482  Identities=19%  Similarity=0.205  Sum_probs=375.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.
T Consensus        87 ~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~  166 (580)
T 3etc_A           87 FTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA  166 (580)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEec
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999976


Q ss_pred             hhhccCCCCcchhhhhccCCC---ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEecc
Q 010114           80 FILRGGRKFPLYSKVLGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS  156 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  156 (518)
                      +..    ....+.........   ..+.+.  ..     ...+..++.+.+......... ........++++++++|||
T Consensus       167 ~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TS  234 (580)
T 3etc_A          167 EDD----VPEQVDEAHAECGDIPLKKAKVG--GD-----VLEGWIDFRKELEESSPIFER-PTGEVSTKNEDICLVYFSS  234 (580)
T ss_dssp             STT----HHHHHHHHHHHHCSCCCEEEEES--SS-----CCTTCEEHHHHHHHSCSCCCC-CCGGGSCCTTSEEEEEEEC
T ss_pred             chh----HHHHHHHHhhhCCCcceEEEEeC--Cc-----cccccccHHHHHhhCCccccc-CccccCCCCCCcEEEEEeC
Confidence            421    00122222222211   111111  10     123345566655543321110 1111235679999999999


Q ss_pred             CCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEec-CCCChhHHHHHHHH
Q 010114          157 GTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQD  234 (518)
Q Consensus       157 GtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~~~i~~  234 (518)
                      ||||.||+|.++|.+++..+.......++.+++++++..|++|..+... ++.++..|+++++.+ ..+++..+++.|++
T Consensus       235 GTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~  314 (580)
T 3etc_A          235 GTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASK  314 (580)
T ss_dssp             CSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHH
T ss_pred             CCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999998887766555677899999999999999998876 888999999998885 45678999999999


Q ss_pred             cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcc
Q 010114          235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA  314 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~  314 (518)
                      +++|+++++|++++.|++.. ....++++||.+++|||++++++.+++.+.+ ++++++.||+||+++.+...+. ....
T Consensus       315 ~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~-~~~~  391 (580)
T 3etc_A          315 YGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPW-MEPK  391 (580)
T ss_dssp             HTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCTT-SCCC
T ss_pred             HCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCCC-CCCC
Confidence            99999999999999998863 4556789999999999999999999998776 6889999999999876554433 3456


Q ss_pred             cCCCCcccccccEEEECCCCCCCCCCCCeeeeeeec------ccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114          315 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII  388 (518)
Q Consensus       315 ~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~  388 (518)
                      .+++|+|+++++++|+|++|++++.|+  .|||+++      +.++.+  ++.+++.+...+.       ++||+|||+|
T Consensus       392 ~~~~G~p~~~~~v~ivd~~g~~~~~g~--~GEl~v~~~~g~~~~~~~g--Y~~~p~~t~~~f~-------~gwy~TGDlg  460 (580)
T 3etc_A          392 PGSIGKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKPVGLFVH--YGKDPERTEETWH-------DGYYHTGDMA  460 (580)
T ss_dssp             TTCCBEECTTCEEEEECTTSCBCCTTC--CEEEEEECTTCCCTTCCCE--ETTCHHHHHHHEE-------TTEEEEEEEE
T ss_pred             CCccccCCCCCEEEEECCCCCCCCCCC--ceEEEEecCCCCCCeeecc--ccCCHhHHHhhcC-------CCEEecCcEE
Confidence            789999999999999999999999999  6999994      334333  2334444444442       4699999999


Q ss_pred             EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114          389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF  468 (518)
Q Consensus       389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~  468 (518)
                      ++|+||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+.++|++.++... .+++.+.+
T Consensus       461 ~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~~-~~~~~~~l  537 (580)
T 3etc_A          461 WMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI-QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYTP-SDSLKNEL  537 (580)
T ss_dssp             EECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCC-CHHHHHHH
T ss_pred             EECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeeccCCC-cEEEEEEEECCCCCC-CHHHHHHH
Confidence            99999999999999999999999999999999997 9999999999999999888 999999999886543 35667778


Q ss_pred             HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      +++++++|++|++|..|+++++||+|++|||+|++|++++.++
T Consensus       538 ~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q  580 (580)
T 3etc_A          538 QDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ  580 (580)
T ss_dssp             HHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred             HHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence            8889999999999999999999999999999999999988753

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=7.2e-74  Score=588.55  Aligned_cols=470  Identities=22%  Similarity=0.218  Sum_probs=386.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus        44 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  123 (517)
T 3r44_A           44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA  123 (517)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECG
T ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECC
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      +....+.........++.          ......+.+.+.....     ........++++++++||||||
T Consensus       124 ~~~------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTT  182 (517)
T 3r44_A          124 PSA------PVIDAIRAQADPPGTVTD----------WIGADSLAERLRSAAA-----DEPAVECGGDDNLFIMYTSGTT  182 (517)
T ss_dssp             GGH------HHHHHHHHSSSCCTTCCE----------EEEHHHHHHHHHHCCC-----CCCCCCCCTTSEEEEEEECC--
T ss_pred             chH------HHHHHHHhccCCccEEEE----------ccCcccHHHHhhccCc-----CCCCCCCCCCCeEEEEECCccc
Confidence            543      222222221111100000          0011123333332221     1122334679999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      |.||||+++|.++...+......+++.++|++++.+|++|.+++...+.++..|+++++.+ ..++..+++.++++++|+
T Consensus       183 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  261 (517)
T 3r44_A          183 GHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMP-QFDATKVWSLIVEERVCI  261 (517)
T ss_dssp             -CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCE
T ss_pred             ccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeC-CCCHHHHHHHHHHhCCeE
Confidence            9999999999999999888878889999999999999999999987555555999999886 578899999999999999


Q ss_pred             EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC-CCcccCCC
Q 010114          240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAF  318 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~  318 (518)
                      +.++|+++..|.+.......+++++|.+++|||++++++.+++.+.  ++++++.||+||+++..+..... .....+++
T Consensus       262 ~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~  339 (517)
T 3r44_A          262 GGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSA  339 (517)
T ss_dssp             EEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCC
T ss_pred             EEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCC
Confidence            9999999999998776666788999999999999999999998866  68899999999998755443332 34567899


Q ss_pred             CcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEE
Q 010114          319 STATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII  397 (518)
Q Consensus       319 g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~  397 (518)
                      |.|.++++++|+|++|.+++.|   .|||++ ++.++.+|  +.+++.+...+       .++||+|||+|++|+||+++
T Consensus       340 G~~~~~~~~~i~d~~~~~~~~g---~GEl~v~g~~v~~GY--~~~p~~t~~~f-------~~g~~~TGDl~~~~~dG~l~  407 (517)
T 3r44_A          340 GRATMFTDVAVRGDDGVIREHG---EGEVVIKSDILLKEY--WNRPEATRDAF-------DNGWFRTGDIGEIDDEGYLY  407 (517)
T ss_dssp             BEECTTEEEEEECTTSCEESSE---EEEEEEEETTSCSEE--TTCHHHHHHTE-------ETTEEEEEEEEEECTTSCEE
T ss_pred             CcCCCCeEEEEECCCCCCCCCC---CeEEEEeCcchhhhh--CCChhhhHhhh-------cCCCEecceeEEEcCCeeEE
Confidence            9999999999999999999888   399999 77776653  23333444333       34699999999999999999


Q ss_pred             EeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccC
Q 010114          398 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN  477 (518)
Q Consensus       398 ~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~  477 (518)
                      ++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+.+++ ..++...+.++++++    ++++|+
T Consensus       408 ~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~v-~~~~~~~~~~~l~~~----l~~~L~  480 (517)
T 3r44_A          408 IKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG-EIAAAIV-VADQNEVSEQQIVEY----CGTRLA  480 (517)
T ss_dssp             EEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEE-EECTTTCCHHHHHHH----HHHHSC
T ss_pred             EecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC-ceEEEEE-ECCCCCCCHHHHHHH----HHHhCC
Confidence            99999999999999999999999997 9999999999999988888 8888887 555555666665555    667899


Q ss_pred             CccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          478 PLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       478 ~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      .|++|..|+++++||+|++||++|++|++++.+++.
T Consensus       481 ~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~  516 (517)
T 3r44_A          481 RYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP  516 (517)
T ss_dssp             GGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred             CCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence            999999999999999999999999999999988764

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=6.2e-73  Score=581.42  Aligned_cols=471  Identities=20%  Similarity=0.193  Sum_probs=398.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|++|++.  .++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++
T Consensus        27 ~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~  106 (511)
T 3e7w_A           27 LTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHA  106 (511)
T ss_dssp             EEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEES
T ss_pred             eeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEec
Confidence            69999999999999999885  7899999999999999999999999999999999999999999999999999999997


Q ss_pred             hhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      +....     ..    .   .                .....+.+.++.......    ........++++++++|||||
T Consensus       107 ~~~~~-----~~----~---~----------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGT  154 (511)
T 3e7w_A          107 AGLSI-----DA----V---G----------------QQIQTVSAEELLENEGGS----VSQDQWVKEHETFYIIYTSGS  154 (511)
T ss_dssp             SSCCT-----TC----C---C----------------CSSCEEEHHHHHTSCSCC----CCGGGSCCTTSEEEEEEECCT
T ss_pred             ccccc-----hh----c---c----------------cccceecHhhhhccccCC----ccccccCCCCCeEEEEECCCC
Confidence            53210     00    0   0                001122344443322210    111222456899999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcC
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAG  236 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~  236 (518)
                      ||.||+|+++|.++...+......+++.++|++++.+|++|.+++..++.++..|+++++.+..  .++..+++.+++++
T Consensus       155 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~  234 (511)
T 3e7w_A          155 TGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSG  234 (511)
T ss_dssp             TSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHC
T ss_pred             CCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcC
Confidence            9999999999999999988887888899999999999999999988899999999999987643  46788999999999


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC----CC
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QP  312 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~  312 (518)
                      +|++.++|+++..++.........++++|.++++||++++++.+++.+.++++++++.||+||+++.++.....    ..
T Consensus       235 ~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~  314 (511)
T 3e7w_A          235 LNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISR  314 (511)
T ss_dssp             CSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTT
T ss_pred             CcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEecccccccc
Confidence            99999999999999988777777889999999999999999999999998889999999999998765433322    22


Q ss_pred             cccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEe
Q 010114          313 QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT  391 (518)
Q Consensus       313 ~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~  391 (518)
                      ....++|.|.++++++|+|++|++++.|+  .|||++ ++.++.+|  +.+++.+...+..   .++.+||+|||+|++ 
T Consensus       315 ~~~~~~G~~~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~---~~g~~~~~TGDlg~~-  386 (511)
T 3e7w_A          315 SESLPVGFAKPDMNIFIMDEEGQPLPEGE--KGEIVIAGPSVSRGY--LGEPELTEKAFFS---HEGQWAYRTGDAGFI-  386 (511)
T ss_dssp             CSSCCCBEECTTCEEEEECTTSCBCCTTC--CEEEEEESTTSCCCB--TTCHHHHHHHEEE---SSSSEEEEEEEEEEE-
T ss_pred             CCcCCCcceeCCCEEEEECCCCCCCCCCC--ceEEEEecCccChhh--CCCcccchhhhcC---CCCCEEEeCCCeEEc-
Confidence            34567999999999999999999999999  699999 77777654  3344444433322   245668999999999 


Q ss_pred             cCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHH
Q 010114          392 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA  471 (518)
Q Consensus       392 ~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~  471 (518)
                      +||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++++++++...+..++.+.++++
T Consensus       387 ~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~~~~l~~~  464 (511)
T 3e7w_A          387 QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGTV-EYLIAAIVPEEHEFEKEFQLTSAIKKE  464 (511)
T ss_dssp             ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSSC-CEEEEEEEECCCCCSSHHHHHHHHHHH
T ss_pred             cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCCc-eEEEEEEEeccccccchhhHHHHHHHH
Confidence            59999999999999999999999999999998 9999999999999988777 899999999887666677788889999


Q ss_pred             HHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          472 IQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       472 ~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      +.++|+.|++|..++++++||+|++||++|++|++.+.++-.
T Consensus       465 l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~  506 (511)
T 3e7w_A          465 LAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH  506 (511)
T ss_dssp             HHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred             HHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence            999999999999999999999999999999999999986543

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=2.2e-73  Score=599.63  Aligned_cols=495  Identities=24%  Similarity=0.372  Sum_probs=390.9

Q ss_pred             CCHHHHHHHHHHHHHHHh-hc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~-~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|+.|+ +. +++||+|+++++|++|+++++|||+++|++++|+++.++++++.+++++++++++|++
T Consensus       114 ~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~  193 (663)
T 1ry2_A          114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT  193 (663)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEE
T ss_pred             EEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEc
Confidence            599999999999999999 88 9999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccCCCCcc---hhhhhccCCC-ceeecccccc--CCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           79 DFILRGGRKFPL---YSKVLGAAPL-KAIVLPAIGN--DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        79 ~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      +......+....   +.......+. ..++......  .... .......|.+++.....     ...+....++++++|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i  267 (663)
T 1ry2_A          194 DESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYKT-----YYPCTPVDSEDPLFL  267 (663)
T ss_dssp             SBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSCS-----CCCCCCEETTSCCEE
T ss_pred             cccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcCC-----CCCccccCCCCceEE
Confidence            764332222222   2222222221 1222111110  0100 01123456666553321     122233457899999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhh-hccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERS  227 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~  227 (518)
                      +|||||||.||||+++|.+++.+.. .....+++.++|++++..|++|++|... ++.++..|+++++.+..   .++..
T Consensus       268 lyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~  347 (663)
T 1ry2_A          268 LYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSR  347 (663)
T ss_dssp             EEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTH
T ss_pred             EeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHH
Confidence            9999999999999999999876654 3334578899999999999999999854 88999999999998753   46789


Q ss_pred             HHHHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccc--cCceecccccccccee
Q 010114          228 FGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELSSA  303 (518)
Q Consensus       228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~  303 (518)
                      +++.|+++++|+++++|++++.|.+...  ....++++||.++++||++++++.+++.+.++  .+++++.||+||+++.
T Consensus       348 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~  427 (663)
T 1ry2_A          348 YWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH  427 (663)
T ss_dssp             HHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred             HHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCe
Confidence            9999999999999999999999988754  34567899999999999999999999988764  3789999999999876


Q ss_pred             EeecCC--CCCcccCCCCcccccccEEEECC-CCCCCCC-CCCeeeeeee-cc--cccCCccccccccccceeeeCCCCC
Q 010114          304 YIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYPD-DQPCVGEVGL-FP--LYLGASDRLLNADHEEVYFRGMPMY  376 (518)
Q Consensus       304 ~~~~~~--~~~~~~~~~g~~~~~~~~~i~~~-~g~~~~~-~~~~~Gel~v-~~--~~~~~~~~~~~~~~~~~~~~~~~~~  376 (518)
                      ++....  ......+++|.|++|++++|+|+ +|++++. |+  .|||++ ++  +++.+|  +.+++.+...+    ..
T Consensus       428 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~--~Gel~i~g~~p~~~~gy--~~~~~~~~~~~----~~  499 (663)
T 1ry2_A          428 LVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSFARTI--WKNHDRYLDTY----LN  499 (663)
T ss_dssp             SEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC--EEEEEESSCCTTSCCEE--TTCHHHHHHHH----TS
T ss_pred             eeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc--ceEEEEecCCCchhccc--ccChHHHHHhh----hc
Confidence            554432  23456789999999999999998 9999988 77  699999 53  444432  12221111111    11


Q ss_pred             CCceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCC
Q 010114          377 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG  456 (518)
Q Consensus       377 ~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~  456 (518)
                      ..++||+|||+|++|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+++||+++++
T Consensus       500 ~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~~~a~Vv~~~~  577 (663)
T 1ry2_A          500 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-QAVAAFVVLKNK  577 (663)
T ss_dssp             SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-CCCEEEEEEC--
T ss_pred             CCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEecCCCC-eEEEEEEEEcCC
Confidence            23569999999999999999999999999999999999999999997 9999999999999988888 889999999875


Q ss_pred             CC---CChh---HHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          457 FT---SQPD---KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       457 ~~---~~~~---~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      ..   ...+   ++.+.++++++++|++|++|..|+++++||+|++||++|+.|++++.++
T Consensus       578 ~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  638 (663)
T 1ry2_A          578 SSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE  638 (663)
T ss_dssp             ----------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred             CccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence            43   2122   5677888889999999999999999999999999999999999998775

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=7.6e-74  Score=588.65  Aligned_cols=474  Identities=18%  Similarity=0.192  Sum_probs=394.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.
T Consensus        27 ~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~  106 (512)
T 3fce_A           27 ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSAT  106 (512)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESS
T ss_pred             EEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecC
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999975


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ....     .       ....  ....             ...+.++......   ..........++++++++||||||
T Consensus       107 ~~~~-----~-------~~~~--~~~~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTT  156 (512)
T 3fce_A          107 AVTV-----T-------DLPV--RIVS-------------EDNLKDIFFTHKG---NTPNPEHAVKGDENFYIIYTSGST  156 (512)
T ss_dssp             CCCS-----S-------CCSS--EEEE-------------THHHHHHHHHTTT---CCCCGGGSCCTTSEEEEEEECC--
T ss_pred             cccc-----c-------cccc--ceec-------------hhhhhhhcccccc---cCCCccccCCCCCeEEEEECCCCC
Confidence            3210     0       0000  0000             0011121111111   011112234579999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~  237 (518)
                      |.||||+++|.++...+......+++.++|++++.+|++|.+++..++.+++.|+++++.+..  .++..+++.++++++
T Consensus       157 G~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~  236 (512)
T 3fce_A          157 GNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDI  236 (512)
T ss_dssp             --CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCC
T ss_pred             CCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCC
Confidence            999999999999999988888888999999999999999999998899999999999998753  467899999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC----Cc
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----PQ  313 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----~~  313 (518)
                      |++.++|++++.++........+++++|.++++||++++++.+++.+.++++++++.||+||+++.++......    ..
T Consensus       237 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~  316 (512)
T 3fce_A          237 QVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQY  316 (512)
T ss_dssp             CEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHC
T ss_pred             cEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccccc
Confidence            99999999999999887777788999999999999999999999999988899999999999987654333221    23


Q ss_pred             ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      ...++|.|.++++++|+|++|++++.|+  .|||++ ++.++.+|  +.+++.+...+.   ..++++||+|||+|++ +
T Consensus       317 ~~~~~G~~~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~---~~~~~~~~~TGDlg~~-~  388 (512)
T 3fce_A          317 KSLPVGYCKSDCRLLIMKEDGTIAPDGE--KGEIVIVGPSVSVGY--LGSPELTEKAFT---MIDGERAYKTGDAGYV-E  388 (512)
T ss_dssp             SSCCCEEECTTCEEEEECSSSCBCCTTS--CEEEEEESTTSCSCB--TTCHHHHHHHEE---EETTEEEEEEEEEEEE-E
T ss_pred             CCCccccccCCcEEEEECCCCCCCCCCC--eEEEEEeccccChhh--cCCchhhhhccc---cCCCCEEEeCCceEEe-c
Confidence            4568999999999999999999999999  699999 77777664  334444443332   1357789999999999 7


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      ||++++.||.||+||++|++|+|.+||++|. +||+|.+++|++.++...+ +.++++|++.++...+..++.+.+++++
T Consensus       389 dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~~~~l~~~l  466 (512)
T 3fce_A          389 NGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY-DYLLAVVVPGEHSFEKEFKLTSAIKKEL  466 (512)
T ss_dssp             TTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE-EEEEEEEEECSCCCSSHHHHHHHHHHHH
T ss_pred             CCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc-eEEEEEEecCCccccchhhhHHHHHHHH
Confidence            9999999999999999999999999999997 9999999999999887777 8899999998776666667888899999


Q ss_pred             HhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          473 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       473 ~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      +++|+.|++|..++++++||+|++||++|++|++.++++-..
T Consensus       467 ~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~  508 (512)
T 3fce_A          467 NERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHH  508 (512)
T ss_dssp             HTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC----
T ss_pred             HhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccc
Confidence            999999999999999999999999999999999999876544

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.4e-73  Score=589.43  Aligned_cols=478  Identities=19%  Similarity=0.211  Sum_probs=387.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        51 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  130 (539)
T 1mdb_A           51 WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD  130 (539)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEecc
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ..... ........+....+.. .++...  ..         ..+.++......     ........++++++++|||||
T Consensus       131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGT  193 (539)
T 1mdb_A          131 AYSGF-DYRSLARQVQSKLPTLKNIIVAG--EA---------EEFLPLEDLHTE-----PVKLPEVKSSDVAFLQLSGGS  193 (539)
T ss_dssp             EETTE-EHHHHHHHHHHHCTTCCCEEEES--CC---------TTSEEGGGCCCC-----CCCCCCCCTTSEEEEEECCCS
T ss_pred             ccccc-cHHHHHHHHHhcCCCccEEEEcC--Cc---------cchhhhhhcccc-----ccccCCCCcCceEEEEeCCCc
Confidence            42100 0000111222211111 111111  00         012222221111     111123456899999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhH--HHHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATLALYQGSPLERSFGKFVQDAG  236 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  236 (518)
                      ||.||||+++|++++..+......+++.++|++++.+|++|.+++.  .++.+++.|+++++.+ ..++..+++.|++++
T Consensus       194 TG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~  272 (539)
T 1mdb_A          194 TGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREK  272 (539)
T ss_dssp             SSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcC
Confidence            9999999999999999888777778899999999999999999986  4889999999999987 568899999999999


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccC
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG  316 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~  316 (518)
                      +|++.++|+++..+++.......++++||.+++|||++++++.+++.+.+ ++++++.||+||++..+...........+
T Consensus       273 ~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  351 (539)
T 1mdb_A          273 VTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVN  351 (539)
T ss_dssp             CSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSCHHHHHH
T ss_pred             CeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCcccccCCCCcHHhcCC
Confidence            99999999999999987666667889999999999999999999998776 68899999999976443322211223457


Q ss_pred             CCCcccccc-cEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCc
Q 010114          317 AFSTATMTA-GLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG  394 (518)
Q Consensus       317 ~~g~~~~~~-~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g  394 (518)
                      ++|+|+++. +++|+|++|++++.|+  .|||++ ++.++.+|.  .+++.+...|      ..++||+|||+|++|+||
T Consensus       352 ~~G~p~~~~~~~~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY~--~~~~~t~~~f------~~~g~~~TGDlg~~~~dG  421 (539)
T 1mdb_A          352 TQGKPMSPYDESRVWDDHDRDVKPGE--TGHLLTRGPYTIRGYY--KAEEHNAASF------TEDGFYRTGDIVRLTRDG  421 (539)
T ss_dssp             CCCEESSTTCEEEEECTTSCBCCTTC--CEEEEEECTTSCSSCT--TCHHHHHHHB------CTTSCEEEEEEEEECTTS
T ss_pred             CCCcccCCCceEEEECCCCCCCcCCC--cceEEeeCcccchhhc--CChhhhhhhc------cCCCCeecCceEEECCCC
Confidence            899999764 7999999999999999  699999 777776542  3333333333      235799999999999999


Q ss_pred             eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114          395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS  474 (518)
Q Consensus       395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~  474 (518)
                      +|++.||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|++++ ...+.+++.+.    +.+
T Consensus       422 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~-~~~~~~~l~~~----l~~  494 (539)
T 1mdb_A          422 YIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-ERSCVFIIPRD-EAPKAAELKAF----LRE  494 (539)
T ss_dssp             CEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS-SCCCHHHHHHH----HHH
T ss_pred             cEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC-ceEEEEEEECC-CCCCHHHHHHH----HHh
Confidence            99999999999999999999999999997 9999999999999988888 89999999874 34455555555    556


Q ss_pred             c-cCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          475 K-LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       475 ~-l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      + |+.|++|..|+++++||+|++||++|++|++++.++++.
T Consensus       495 ~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~  535 (539)
T 1mdb_A          495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA  535 (539)
T ss_dssp             TTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred             CCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhc
Confidence            6 999999999999999999999999999999999988764

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1.3e-73  Score=590.00  Aligned_cols=477  Identities=22%  Similarity=0.233  Sum_probs=355.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus        48 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  127 (541)
T 1v25_A           48 TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDP  127 (541)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECG
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEECh
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ...      ..+.......+.. .++.... ..     ......+.+++.....        .....++++++++|||||
T Consensus       128 ~~~------~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TSGT  187 (541)
T 1v25_A          128 NLL------PLVEAIRGELKTVQHFVVMDE-KA-----PEGYLAYEEALGEEAD--------PVRVPERAACGMAYTTGT  187 (541)
T ss_dssp             GGH------HHHHHHGGGCSSCCEEEESSS-CC-----CTTCEEHHHHCCSCCC--------CCCCCTTSEEEEEEECSS
T ss_pred             hHH------HHHHHHHhhCCCccEEEEecC-CC-----CcccccHHHHhhccCC--------cccCCCCCcEEEEECCCC
Confidence            543      2222222222211 1111111 00     0123355555443221        022356899999999999


Q ss_pred             CCCCceEEeccchhHHHhhh--ccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114          159 TGEPKAIPWTQLSSIRCTAE--GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAG  236 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  236 (518)
                      ||.||||+++|++++.+...  ....+++.++|++++.+|++|.+++..++.+++.|+++++.+...++..+++.+++++
T Consensus       188 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~  267 (541)
T 1v25_A          188 TGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG  267 (541)
T ss_dssp             SSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTT
T ss_pred             CCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcC
Confidence            99999999999999877654  2345678899999999999999998777889999999999876678899999999999


Q ss_pred             ccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC-----
Q 010114          237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-----  311 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-----  311 (518)
                      +|+++++|+++..|++.......+++++|.+++|||++++++.+++ +.+ ++++++.||+||++++++......     
T Consensus       268 ~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  345 (541)
T 1v25_A          268 VTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESL  345 (541)
T ss_dssp             CCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred             eeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceeccccccccccc
Confidence            9999999999999988765556678999999999999999999988 454 788999999999987766553321     


Q ss_pred             -----CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceecccc
Q 010114          312 -----PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG  385 (518)
Q Consensus       312 -----~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG  385 (518)
                           ....+++|.|+++++++|+|++|++++.+....|||++ ++.++.+|.  .+++.+...+      ..++||+||
T Consensus       346 ~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~--~~p~~t~~~f------~~~g~~~TG  417 (541)
T 1v25_A          346 SEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY--GNEEATRSAL------TPDGFFRTG  417 (541)
T ss_dssp             CHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCB--TCHHHHHTTB------CTTSCEEEE
T ss_pred             CccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhcccc--CChhhhhhhc------cCCCCeEcC
Confidence                 12357899999999999999999999853111699999 777776642  3333333333      235799999


Q ss_pred             ceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHH
Q 010114          386 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK  465 (518)
Q Consensus       386 D~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~  465 (518)
                      |+|++|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|++. +...+.+++.
T Consensus       418 Dlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~-~~~~~~~~l~  494 (541)
T 1v25_A          418 DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPR-GEKPTPEELN  494 (541)
T ss_dssp             EEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CEEEEECSSSS-EEEEECC--------------
T ss_pred             CEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEEEEEEecCCCcC-ceEEEEEEEC-CCCCCHHHHH
Confidence            99999999999999999999999999999999999997 8999999999999998888 8899999876 3233444444


Q ss_pred             HHHHHHHHh-ccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          466 MIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       466 ~~~~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      ++    +.+ +|+.|++|..++++++||+|++||++|++|++++.+++++
T Consensus       495 ~~----~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~  540 (541)
T 1v25_A          495 EH----LLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYGG  540 (541)
T ss_dssp             ----------CCCTTTSCSBC--------------CCTTHHHHSTTSSCC
T ss_pred             HH----HHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhCC
Confidence            44    556 8999999999999999999999999999999999887764

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=5.3e-74  Score=594.37  Aligned_cols=486  Identities=17%  Similarity=0.194  Sum_probs=297.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        51 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  130 (550)
T 3rix_A           51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSK  130 (550)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECG
T ss_pred             eEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcH
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCC-C-CCCCCCCCCCCCEEEEEeccC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-P-NYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      ...      ..........+....++......    ......++.+++........ . ...+.....++++++++||||
T Consensus       131 ~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSG  200 (550)
T 3rix_A          131 KGL------QKILNVQKKLPIIQKIIIMDSKT----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSG  200 (550)
T ss_dssp             GGH------HHHHHHHHHCTTCCEEEETTCSS----CBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC--
T ss_pred             HHH------HHHHHHHhhCCCcceEEEEcCCc----cccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCC
Confidence            543      22223332222222222111110    11233445555443222111 0 111112234578999999999


Q ss_pred             CCCCCceEEeccchhHHHhhhcccc---ccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114          158 TTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD  234 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~  234 (518)
                      |||.||||+++|.+++.++......   .++.++|++++.+|++|.+++...+.+++.|+++++.+ ..++..+++.|++
T Consensus       201 TTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~  279 (550)
T 3rix_A          201 STGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQD  279 (550)
T ss_dssp             ---CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHH
T ss_pred             cccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHH
Confidence            9999999999999998877655544   46788999999999999999988889999999999986 5778999999999


Q ss_pred             cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcc
Q 010114          235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA  314 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~  314 (518)
                      +++|+++++|+++..+++.....+.++++||.+++|||++++++.+++.+.++...+++.||+||+++.++.... ....
T Consensus       280 ~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~  358 (550)
T 3rix_A          280 YKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDK  358 (550)
T ss_dssp             TTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCC
T ss_pred             cCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC-CCCC
Confidence            999999999999999999887777889999999999999999999999988865569999999999987665554 3456


Q ss_pred             cCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          315 FGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       315 ~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      .+++|.|+++++++|+| ++|++++.|+  .|||++ ++.++.+|  +.+++.+...+      ..++||+|||+|++|+
T Consensus       359 ~~~vG~~~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~~------~~~g~~~TGDl~~~~~  428 (550)
T 3rix_A          359 PGAVGKVVPFFEAKVVDLDTGKTLGVNQ--RGELCVRGPMIMSGY--VNNPEATNALI------DKDGWLHSGDIAYWDE  428 (550)
T ss_dssp             TTEEEEECTTCEEEEECTTTCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEEEECT
T ss_pred             CCCcccccCCcEEEEEeCCCCcCCCCCC--CeEEEEeCCCcchhh--cCChhhhhhhc------CCCCCeecCcEEEEeC
Confidence            78999999999999999 6799999999  699999 77776653  22333333333      3567999999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      ||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+++++...+.+++.++    +
T Consensus       429 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----~  502 (550)
T 3rix_A          429 DEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDDDAG-ELPAAVVVLEHGKTMTEKEIVDY----V  502 (550)
T ss_dssp             TCCEEEC-------------------------------------------------------------------------
T ss_pred             CceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEEEeecCCCC-ceEEEEEEecCCCCCCHHHHHHH----H
Confidence            9999999999999999999999999999997 9999999999999998888 89999999887666666666655    5


Q ss_pred             HhccCCcccc-ceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          473 QSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       473 ~~~l~~~~~p-~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      .+++++++.| ..|+++++||+|++||++|++|++++.+..+.
T Consensus       503 ~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~  545 (550)
T 3rix_A          503 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKG  545 (550)
T ss_dssp             -------------------------------------------
T ss_pred             HHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccc
Confidence            5677787666 57999999999999999999999999776544

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=4.1e-72  Score=574.35  Aligned_cols=460  Identities=20%  Similarity=0.176  Sum_probs=373.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEe--
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT--   77 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~--   77 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+  
T Consensus        30 ~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~  109 (504)
T 1t5h_X           30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV  109 (504)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC
T ss_pred             eEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEec
Confidence            59999999999999999999 999999999999999999999999999999999999999999999999999999999  


Q ss_pred             chhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114           78 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      ++...         ..+........+                 +.+.+++..................++++++++||||
T Consensus       110 ~~~~~---------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  163 (504)
T 1t5h_X          110 GRQVA---------DAIFQSGSGARI-----------------IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSG  163 (504)
T ss_dssp             --CHH---------HHHHHHCCCCEE-----------------EEGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC
T ss_pred             chhhh---------hhhhhcccccee-----------------EEecchhhcCcccccCCccCCCCCCCCCeEEEEeCCC
Confidence            65321         111011111111                 1222332221000000011112345689999999999


Q ss_pred             CCCCCceEEeccchhHHHhhhccccccC--CCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114          158 TTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQD  234 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~  234 (518)
                      |||.||||+++|+++...+......+++  .++|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.|++
T Consensus       164 TTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~  242 (504)
T 1t5h_X          164 TTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE-EFRPVDALQLVQQ  242 (504)
T ss_dssp             ---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS-SCCHHHHHHHHHH
T ss_pred             CCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHH
Confidence            9999999999999999888776666777  88899999999999999854 889999999999987 4778999999999


Q ss_pred             cCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCC
Q 010114          235 AGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP  312 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~  312 (518)
                      +++|+++++|++++.|++...  ....++++||.+++|||++++++.+.+.+.+ ++++++.||+||++..+...    .
T Consensus       243 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~----~  317 (504)
T 1t5h_X          243 EQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMR----Q  317 (504)
T ss_dssp             HTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEE----S
T ss_pred             hCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeecccccccccccc----C
Confidence            999999999999999988652  2455789999999999999999999998877 57899999999994332221    2


Q ss_pred             cccCCCCcccccccEEEECCCC---CCCCCCCCeeeeeeec-c-cccCCccccccccccceeeeCCCCCCCceeccccce
Q 010114          313 QAFGAFSTATMTAGLVILDECG---VPYPDDQPCVGEVGLF-P-LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI  387 (518)
Q Consensus       313 ~~~~~~g~~~~~~~~~i~~~~g---~~~~~~~~~~Gel~v~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~  387 (518)
                      ...+++|.|.++++++++|+++   ++++.|+  .|||+++ . ..+.+|  +.+++.+...+.       ++||+|||+
T Consensus       318 ~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~--~GEl~v~gg~~~~~GY--~~~~~~t~~~f~-------~g~~~TGDl  386 (504)
T 1t5h_X          318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGE--EGELIVAASDSAFVGY--LNQPQATAEKLQ-------DGWYRTSDV  386 (504)
T ss_dssp             CSSSSEEBCCTTCCEEEECTTSCTTCBCCTTC--CEEEEEECCTTSCCCB--TTCHHHHHHHEE-------TTEEEEEEE
T ss_pred             CCCCccccCCCCCceeEEeccCCCCCcCCCCC--cceEEEeCCceeecee--cCCchhhhhhhc-------CCccccCcE
Confidence            4457889999999999999887   8999998  6999994 3 443332  333333333332       469999999


Q ss_pred             EEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHH
Q 010114          388 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI  467 (518)
Q Consensus       388 ~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~  467 (518)
                      |++|+||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+++++...+.+++.++
T Consensus       387 g~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~  464 (504)
T 1t5h_X          387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLADQRWG-QSVTACVVPRLGETLSADALDTF  464 (504)
T ss_dssp             EEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEECSSSS-EEEEEEEEECTTCCCCHHHHHHH
T ss_pred             EEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEeecCCCC-cEEEEEEEecCCcCcCHHHHHHH
Confidence            999999999999999999999999999999999997 9999999999999998888 89999999987766666666555


Q ss_pred             HHHHHHh-ccCCccccceEEEecCCCCCCCchhHHHHHHHHHh
Q 010114          468 FSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK  509 (518)
Q Consensus       468 ~~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~  509 (518)
                          +++ +|+.|++|+.|+++++||+|++||++|++|+++++
T Consensus       465 ----~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          465 ----CRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             ----HHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred             ----HhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence                666 89999999999999999999999999999999875

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=2.6e-71  Score=575.19  Aligned_cols=475  Identities=23%  Similarity=0.286  Sum_probs=387.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~--v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|++|++.  +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++
T Consensus        74 ~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  153 (570)
T 3c5e_A           74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAG  153 (570)
T ss_dssp             EEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEE
T ss_pred             EeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEec
Confidence            59999999999999999986  9999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114           79 DFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      +...      ..+..+....+.. .++... ...     ..+...+.+++.....     ........++++++|+||||
T Consensus       154 ~~~~------~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSG  216 (570)
T 3c5e_A          154 DEVI------QEVDTVASECPSLRIKLLVS-EKS-----CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSG  216 (570)
T ss_dssp             TTTH------HHHHHHGGGCTTCCEEEEES-SSC-----CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCC
T ss_pred             hHHH------HHHHHHhhcCCceeEEEEec-ccC-----ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCC
Confidence            7532      2222222222221 111111 100     1123345555543322     11122345689999999999


Q ss_pred             CCCCCceEEeccchhHH--HhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecC-CCChhHHHHHHH
Q 010114          158 TTGEPKAIPWTQLSSIR--CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG-SPLERSFGKFVQ  233 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~-~~~~~~~~~~i~  233 (518)
                      |||.||||+++|. ++.  ..... ..+++.++|++++.+|++|.+++.. ++.++..|+++++.+. .+++..+++.|+
T Consensus       217 TTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~  294 (570)
T 3c5e_A          217 TSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLS  294 (570)
T ss_dssp             SSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHH
T ss_pred             CCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHH
Confidence            9999999999999 554  33333 5678899999999999999999875 8899999999999864 567899999999


Q ss_pred             HcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCc
Q 010114          234 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQ  313 (518)
Q Consensus       234 ~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~  313 (518)
                      ++++|+++++|++++.|++.. ....+++++|.++++||++++++.+.+.+.+ ++++++.||+||++..+.... ....
T Consensus       295 ~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~  371 (570)
T 3c5e_A          295 SYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKI  371 (570)
T ss_dssp             HSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCC
T ss_pred             HhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-cccc
Confidence            999999999999999998763 3445688999999999999999999998776 688999999999987654433 2345


Q ss_pred             ccCCCCcccccccEEEECCCCCCCCCCCCeeeeeeec------ccccCCccccccccccceeeeCCCCCCCceeccccce
Q 010114          314 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI  387 (518)
Q Consensus       314 ~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~  387 (518)
                      ..+++|.|+++++++|+|++|++++.|+  .|||+++      +.++.+|  +.+++.+...+.       ++||+|||+
T Consensus       372 ~~~~vG~p~~~~~v~i~d~~g~~~~~G~--~GEl~v~~~~~~g~~v~~GY--~~~~~~t~~~f~-------~~~~~TGDl  440 (570)
T 3c5e_A          372 KPGYMGTAASCYDVQIIDDKGNVLPPGT--EGDIGIRVKPIRPIGIFSGY--VDNPDKTAANIR-------GDFWLLGDR  440 (570)
T ss_dssp             CTTCCCEECTTCCEEEECTTSCBCCTTC--CEEEEEECSSBCCTTCCCEE--TTCHHHHHHTEE-------TTEEEEEEE
T ss_pred             CCCcccccCCCceEEEECCCCCCCCCCC--CCeeEEeccCCCCchhhccc--cCChhHhhhhhc-------CCcccccee
Confidence            6689999999999999999999999999  6999994      3333332  223333333332       469999999


Q ss_pred             EEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCC-CChhHHHH
Q 010114          388 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKM  466 (518)
Q Consensus       388 ~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~-~~~~~l~~  466 (518)
                      |++|+||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+.++|++.++.. .+.+.+.+
T Consensus       441 g~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~~  518 (570)
T 3c5e_A          441 GIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLASQFLSHDPEQLTK  518 (570)
T ss_dssp             EEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECGGGTTSCHHHHHH
T ss_pred             EEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECCcccCcchHHHHH
Confidence            999999999999999999999999999999999998 9999999999999988877 89999999876432 34456777


Q ss_pred             HHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhc
Q 010114          467 IFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH  510 (518)
Q Consensus       467 ~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~  510 (518)
                      .++++++++|+.|++|..|+++++||+|++||++|++|++.+.+
T Consensus       519 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~  562 (570)
T 3c5e_A          519 ELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK  562 (570)
T ss_dssp             HHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred             HHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence            88888999999999999999999999999999999999998864

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=2.3e-72  Score=579.12  Aligned_cols=474  Identities=16%  Similarity=0.144  Sum_probs=379.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        30 ~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~  109 (521)
T 3l8c_A           30 RTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIE  109 (521)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESS
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecC
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      +.......             .                 ....+.++......  ...........++++++++||||||
T Consensus       110 ~~~~~~~~-------------~-----------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTT  157 (521)
T 3l8c_A          110 EFPLTIEG-------------I-----------------SLVSLSEIESAKLA--EMPYERTHSVKGDDNYYIIFTSGTT  157 (521)
T ss_dssp             CCCSCCTT-------------S-----------------EEEEHHHHHHHHHH--TCCCCCSSCCCTTSEEEEEECCC--
T ss_pred             cccccccc-------------C-----------------cccchhhhhhcccc--cCCcccCCCCCCCCcEEEEEcCCCC
Confidence            43211000             0                 00111111110000  0001112234579999999999999


Q ss_pred             CCCceEEeccchhHHHhhhcccc--ccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDA  235 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~  235 (518)
                      |.||||+++|.++++........  +.+.+++++++..|++|..++..++.++..|+++++.+..  .++..+++.++++
T Consensus       158 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~  237 (521)
T 3l8c_A          158 GQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQL  237 (521)
T ss_dssp             -CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHS
T ss_pred             CCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHc
Confidence            99999999999999877655444  6778899999999999999988889999999999988753  3678999999999


Q ss_pred             CccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC----
Q 010114          236 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----  311 (518)
Q Consensus       236 ~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----  311 (518)
                      ++|++.++|+++..++........+++++|.++++|+++++++.+.+.+.++++++++.||+||+++.+.......    
T Consensus       238 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  317 (521)
T 3l8c_A          238 PVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVD  317 (521)
T ss_dssp             CCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHH
T ss_pred             CCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccccc
Confidence            9999999999999998887767778999999999999999999999998988899999999999987654433221    


Q ss_pred             CcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEE
Q 010114          312 PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR  390 (518)
Q Consensus       312 ~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~  390 (518)
                      .....++|+|+++++++|+|++|.+++.|+  .|||++ ++.++.+|  +.+++.+...|..   .++++||+|||+|++
T Consensus       318 ~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~---~~~~~~~~TGDlg~~  390 (521)
T 3l8c_A          318 NYTRLPIGYPKPDSPTYIIDEDGKELSSGE--QGEIIVTGPAVSKGY--LNNPEKTAEAFFT---FKGQPAYHTGDIGSL  390 (521)
T ss_dssp             HCSSCEEEEECTTSCEEEECTTSCBCCTTC--CEEEEEESTTSCSCB--TTCHHHHHHHEEE---ETTEEEEEEEEEEEE
T ss_pred             CCCccccccccCCCEEEEECCCcCCCCCCC--ceEEEecccccChhh--cCCchHhhccCcC---CCCceeeeCCCEEEE
Confidence            234568999999999999999999999999  699999 77777664  2344444333321   256789999999999


Q ss_pred             ecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC---ChhHHHHH
Q 010114          391 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMI  467 (518)
Q Consensus       391 ~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~---~~~~l~~~  467 (518)
                      |+||++++.||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+.+.++++|+++++...   ...++.+.
T Consensus       391 d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~  469 (521)
T 3l8c_A          391 TEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKA  469 (521)
T ss_dssp             CSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHH
T ss_pred             eCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHH
Confidence            999999999999999999999999999999998 99999999999887654433789999999875322   22356778


Q ss_pred             HHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccccc
Q 010114          468 FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  514 (518)
Q Consensus       468 ~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~~  514 (518)
                      ++++++++|+.|++|..|+++++||+|++||++|++|++++.++-..
T Consensus       470 l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~  516 (521)
T 3l8c_A          470 IKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGH  516 (521)
T ss_dssp             HHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-----
T ss_pred             HHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcc
Confidence            88889999999999999999999999999999999999999876543

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=5.6e-73  Score=585.54  Aligned_cols=480  Identities=18%  Similarity=0.203  Sum_probs=301.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        56 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~  135 (544)
T 3o83_A           56 LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR  135 (544)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred             eeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ..... ........+.........++.....       .....+.++......    .........++++++++||||||
T Consensus       136 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTT  203 (544)
T 3o83_A          136 QHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ-------ATDFGLLDWIETPAE----TFVDFSSTPADEVAFFQLSGGST  203 (544)
T ss_dssp             TSGGG-SSSHHHHHHHHTTCCCSEEEEETCC-------TTSEEHHHHHHSCCS----SCCCCCCCCTTSEEEEEECCC--
T ss_pred             ccccc-cHHHHHHHHhhcccCcceEEEecCC-------ccccchhhhhhcccc----cccccccCCccceEEEEECCCcc
Confidence            43210 0011122222222211111111100       011233333332221    11111334579999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhH--HHHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |.||||+++|.++..++......+++.++|++++.+|++|.+++.  .++.++..|+++++.+ ..++..+++.|+++++
T Consensus       204 G~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~  282 (544)
T 3o83_A          204 GTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQV  282 (544)
T ss_dssp             CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTC
T ss_pred             cCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCC
Confidence            999999999999999998888888999999999999999999886  3888999999999987 5688999999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCC
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  317 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  317 (518)
                      |++.++|+++..+++.......++++||.+++||+++++++.+++.+.+ ++++++.||+||++..+............+
T Consensus       283 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  361 (544)
T 3o83_A          283 NMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTT  361 (544)
T ss_dssp             CEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTSCHHHHHHC
T ss_pred             CEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeecCCCchhhccCC
Confidence            9999999999999988766667789999999999999999999998876 689999999999886554443333345678


Q ss_pred             CCccc-ccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCce
Q 010114          318 FSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY  395 (518)
Q Consensus       318 ~g~~~-~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  395 (518)
                      +|.|+ ++.+++|+|++|++++.|+  +|||++ ++.++.+|  +.+++.+...+      ..++||+|||+|++|+||+
T Consensus       362 ~G~p~~~~~~~~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~~~TGDlg~~~~dG~  431 (544)
T 3o83_A          362 QGRPISSDDEIKIVDEQYREVPEGE--IGMLATRGPYTFCGY--YQSPEHNSQVF------DEDNYYYSGDLVQRTPDGN  431 (544)
T ss_dssp             CCEESCTTCEEEEECTTSCBCCTTC--CEEEEEECTTSCSCC--TTCHHHHHHHB------CTTCCEEEEEEEEECTTSC
T ss_pred             CceecCCCcEEEEECCCCCCCCCCC--eeEEEEecCCcchhh--cCChhhhhhhC------CCCCCeEcCCEEEEcCCCC
Confidence            99996 8999999999999999999  699999 77776653  23333333333      3467999999999999999


Q ss_pred             EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh-
Q 010114          396 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-  474 (518)
Q Consensus       396 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-  474 (518)
                      ++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++++.++. ..+.+++.+.    +.+ 
T Consensus       432 l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~-~~~~~~l~~~----~~~~  504 (544)
T 3o83_A          432 LRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG-EKSCAFIVSRNP-ELKAVVLRRH----LMEL  504 (544)
T ss_dssp             EEEEEEEC------------------------------------------------------------------------
T ss_pred             EEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC-ceEEEEEEeCCC-CCCHHHHHHH----HHhC
Confidence            9999999999999999999999999997 9999999999999998888 889999987752 3344444444    555 


Q ss_pred             ccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      +|+.|++|..|+++++||+|++||++|++|++++.+.
T Consensus       505 ~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  541 (544)
T 3o83_A          505 GIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS  541 (544)
T ss_dssp             -------------------------------------
T ss_pred             CCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence            7999999999999999999999999999999988753

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1.6e-71  Score=575.93  Aligned_cols=458  Identities=18%  Similarity=0.163  Sum_probs=373.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus        65 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~  144 (563)
T 1amu_A           65 LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQK  144 (563)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECG
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcC
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .....      ...+. . ......+..  .              .+... .     .........++++++++||||||
T Consensus       145 ~~~~~------~~~~~-~-~~~~~~~~~--~--------------~~~~~-~-----~~~~~~~~~~~d~a~i~~TSGTT  194 (563)
T 1amu_A          145 HLVHL------IHNIQ-F-NGQVEIFEE--D--------------TIKIR-E-----GTNLHVPSKSTDLAYVIYTSGTT  194 (563)
T ss_dssp             GGHHH------HTTSC-C-CSEEEECCC--S--------------TTTTS-C-----CSCCCCCCCTTSEEEEEEEC---
T ss_pred             chhhh------hhhcc-c-cCceeeecc--h--------------hhccc-c-----CccCCCCCCCCCeEEEEECCCCC
Confidence            53211      00000 0 000111100  0              00000 0     00111223568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~  237 (518)
                      |.||||+++|+++..........+++.++|++++.+|++|..++..++.+++.|+++++.+..  .++..+++.++++++
T Consensus       195 G~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~  274 (563)
T 1amu_A          195 GNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEI  274 (563)
T ss_dssp             --CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTC
T ss_pred             CCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCC
Confidence            999999999999998887777778899999999999999999988888999999999998643  467889999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC--CCccc
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAF  315 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~--~~~~~  315 (518)
                      |++.++|+++..+...      .++++|.+++||+++++++.+.+.+.   .++++.||+||+++.++.....  .....
T Consensus       275 t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  345 (563)
T 1amu_A          275 TVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHS  345 (563)
T ss_dssp             CEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSS
T ss_pred             cEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCC
Confidence            9999999998877432      46789999999999999999988754   6799999999998654433222  22355


Q ss_pred             CCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCc
Q 010114          316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG  394 (518)
Q Consensus       316 ~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g  394 (518)
                      .++|+|+++++++|+|++|++++.|+  .|||++ ++.++.+|  +.+++.+...+...+..++++||+|||+|++|+||
T Consensus       346 ~~vG~p~~~~~v~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG  421 (563)
T 1amu_A          346 VPIGAPIQNTQIYIVDENLQLKSVGE--AGELCIGGEGLARGY--WKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG  421 (563)
T ss_dssp             CCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEE--TTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred             CcccceeCCCEEEEECCCcCCCCCCC--cEEEEEechhhChhh--CCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence            78999999999999999999999999  699999 77777654  34555555566655666788999999999999999


Q ss_pred             eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114          395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS  474 (518)
Q Consensus       395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~  474 (518)
                      +|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++++...  ..+.+++++    ++++
T Consensus       422 ~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~~--~~~~~~l~~----~l~~  493 (563)
T 1amu_A          422 NIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ-PYLCAYFVSEK--HIPLEQLRQ----FSSE  493 (563)
T ss_dssp             CEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC-EEEEEEEEESS--CCCHHHHHH----HHHH
T ss_pred             eEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCCCC-eEEEEEEEeCC--CCCHHHHHH----HHHh
Confidence            99999999999999999999999999997 9999999999999988877 88999998764  334455544    4677


Q ss_pred             ccCCccccceEEEecCCCCCCCchhHHHHHHHHHh
Q 010114          475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK  509 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~  509 (518)
                      +|+.|++|..|+++++||+|++||++|++|++...
T Consensus       494 ~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~  528 (563)
T 1amu_A          494 ELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL  528 (563)
T ss_dssp             HSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred             hCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence            89999999999999999999999999999987543

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=7.8e-71  Score=568.52  Aligned_cols=474  Identities=23%  Similarity=0.257  Sum_probs=374.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus        49 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  128 (529)
T 2v7b_A           49 TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASG  128 (529)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEG
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEech
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCC--ceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccC
Q 010114           80 FILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      ...      ..+....+....  ..++.......    .......+.++......     ........++++++++||||
T Consensus       129 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSG  193 (529)
T 2v7b_A          129 ALV------QNVTQALESAEHDGCQLIVSQPRES----EPRLAPLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSG  193 (529)
T ss_dssp             GGH------HHHHHHHHCC---CCEEEEECC----------CCCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC--
T ss_pred             hhh------hHHHHHHhhccccCceEEEeccccc----ccccccchhhhhccCCC-----cccccCCCCCCeEEEEECCC
Confidence            543      122222221111  11111111000    00011245555442221     11122345789999999999


Q ss_pred             CCCCCceEEeccchh-HHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHc
Q 010114          158 TTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDA  235 (518)
Q Consensus       158 tTG~pK~v~~s~~~~-~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~  235 (518)
                      |||.||||+++|.++ ..........+++.++|++++.+|++|.+++.. ++.++..|+++++.+...++..+++.++++
T Consensus       194 TTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~  273 (529)
T 2v7b_A          194 STGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEH  273 (529)
T ss_dssp             ---CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHS
T ss_pred             CCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHh
Confidence            999999999999999 666666556678899999999999999999876 778999999999886677889999999999


Q ss_pred             CccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCccc
Q 010114          236 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF  315 (518)
Q Consensus       236 ~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~  315 (518)
                      ++|+++++|+++..+++..........++|.+++|||++++++.+.+.+.+ ++++++.||+||++.++...... ....
T Consensus       274 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~  351 (529)
T 2v7b_A          274 RPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEY  351 (529)
T ss_dssp             CCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCT
T ss_pred             CCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeeccccC-CCcc
Confidence            999999999999999886543333234899999999999999999998876 68899999999997665544332 2566


Q ss_pred             CCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCc
Q 010114          316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG  394 (518)
Q Consensus       316 ~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g  394 (518)
                      +++|.|+++++++|+|++|++++.|+  .|||++ ++.++.+|  +.+++.+...+.       ++||+|||+|++++||
T Consensus       352 ~~~G~p~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~~~~gY--~~~~~~t~~~f~-------~~~~~TGDl~~~~~~G  420 (529)
T 2v7b_A          352 GTTGRPVPGYEIELRDEAGHAVPDGE--VGDLYIKGPSAAVMY--WNNREKSRATFL-------GEWIRSGDKYCRLPNG  420 (529)
T ss_dssp             TSCCEECTTCEEEEECTTSCBCCTTS--CEEEEEECTTCCCCB--TTCHHHHHHHEE-------TTEEEEEEEEEECTTS
T ss_pred             CCcccCCCCCEEEEECCCCCCCCCCC--ccEEEEecCCccccc--CCChHHHHHhhh-------cCCcccCceEEECCCc
Confidence            89999999999999999999999999  699999 77766653  333333433342       4699999999999999


Q ss_pred             eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114          395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS  474 (518)
Q Consensus       395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~  474 (518)
                      ++++.||.||+||++|++|+|.+||++|. +||+|.+++|++. ++..+ +.+.+++++.++... .+.+.+.+++++++
T Consensus       421 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~-~~~~~-~~~~a~vv~~~~~~~-~~~~~~~l~~~l~~  496 (529)
T 2v7b_A          421 CYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEAAVVGV-DHGGL-VKTRAFVVLKREFAP-SEILAEELKAFVKD  496 (529)
T ss_dssp             CEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEEEEEEE-EETTE-EEEEEEEEECTTCCC-CHHHHHHHHHHHHT
T ss_pred             cEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEEe-cCCCc-eEEEEEEEecCCCCc-chhHHHHHHHHHHh
Confidence            99999999999999999999999999997 9999999999998 55556 788999998765321 23355678888899


Q ss_pred             ccCCccccceEEEecCCCCCCCchhHHHHHHH
Q 010114          475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD  506 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~  506 (518)
                      +|+.|++|..|+++++||+|++||++|++|++
T Consensus       497 ~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          497 RLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             TSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred             hcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence            99999999999999999999999999999985

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=2.8e-72  Score=583.61  Aligned_cols=459  Identities=20%  Similarity=0.219  Sum_probs=292.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus       101 ~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~  180 (570)
T 4gr5_A          101 LTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSR  180 (570)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ........            .........                 ....     ...........++++++++||||||
T Consensus       181 ~~~~~~~~------------~~~~~~~~~-----------------~~~~-----~~~~~~~~~~~~~d~a~i~~TSGTT  226 (570)
T 4gr5_A          181 PLSGRLTG------------TTTLYVEDE-----------------AASD-----APAGNLATGVGPEDVACVMFTSGST  226 (570)
T ss_dssp             TTTTSSCS------------SEEEECCC-----------------------------CCCCCCCCCTTSEEEEECCSSCC
T ss_pred             hhhhcccC------------Ccceeeecc-----------------cccc-----ccccccCCCCCCCCeEEEEECCcCC
Confidence            53211000            000111000                 0000     0111112234579999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC-CCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t  238 (518)
                      |.||||+++|+++.+.... ...+++.++|++++.+|++|..+...++.+++.|+++++.+. ..++..+++.|+++++|
T Consensus       227 G~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt  305 (570)
T 4gr5_A          227 GRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVT  305 (570)
T ss_dssp             SSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCc
Confidence            9999999999999877665 455678999999999999998887778899999999999864 45788999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC---CCccc
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAF  315 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~~  315 (518)
                      ++.++|+++..|++...   .++++||.+++|||+++++..+.+.+.++++++++.||+||+++..+.....   .....
T Consensus       306 ~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~  382 (570)
T 4gr5_A          306 MLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTA  382 (570)
T ss_dssp             EEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSS
T ss_pred             EEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCc
Confidence            99999999999987643   3588999999999999999999988888889999999999998754433222   22345


Q ss_pred             CCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCC--CCCceeccccceEEEec
Q 010114          316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM--YKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       316 ~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~TGD~~~~~~  392 (518)
                      .++|+|+++++++|+|+++++++.|+  +|||++ ++.++.+|  +.+++.+...|..+++  .++++||+|||+|++|+
T Consensus       383 ~~iG~p~~~~~v~i~d~~~~~~~~G~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~  458 (570)
T 4gr5_A          383 LPIGVPLAGKRAYVLDDDLKPAANGA--LGELYVAGAGLAHGY--VSRPALTAERFVADPFAGPGGERMYRTGDLARRRA  458 (570)
T ss_dssp             CCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEE--TTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECT
T ss_pred             cccceeeCCCEEEEECCCCCCCCCCC--cEEEEEeecccchhc--CCCchhhhcccccCCCCCCCCCEEEeCCCeEEECC
Confidence            67999999999999999999999999  799999 77777654  3445555555544433  35678999999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCC-CCChhHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF-TSQPDKLKMIFSKA  471 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~-~~~~~~l~~~~~~~  471 (518)
                      ||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|+.++.. ..+.+++    +++
T Consensus       459 dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~l----~~~  532 (570)
T 4gr5_A          459 DGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLGD-KQLVAYVVAERADAPPDAAEL----RRH  532 (570)
T ss_dssp             TSCEEEEEC-----------------------------------------------------------------------
T ss_pred             CCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCCCC-eEEEEEEEecCCCCCcCHHHH----HHH
Confidence            9999999999999999999999999999997 9999999999999888777 8899999876532 2344444    444


Q ss_pred             HHhccCCccccceEEEecCCCCCCCchhHHHHHHHH
Q 010114          472 IQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       472 ~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~  507 (518)
                      +.++|+.|++|..++++++||+|++||++|++|++.
T Consensus       533 l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          533 VAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ------------------------------------
T ss_pred             HHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence            677899999999999999999999999999999875

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=7.5e-72  Score=573.38  Aligned_cols=469  Identities=16%  Similarity=0.138  Sum_probs=288.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++
T Consensus        32 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  111 (509)
T 3ivr_A           32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGT  111 (509)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECS
T ss_pred             EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ...............++....         ....+.++......    .........++++++++||||||
T Consensus       112 ~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTT  172 (509)
T 3ivr_A          112 DYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD----TPFSAPEFGAADGFVIIHTAAVG  172 (509)
T ss_dssp             TTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC----SCCCCCCCCTTSEEEEEEEEC--
T ss_pred             chh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC----CCCCcCCCCccccEEEEeCCCCC
Confidence            543      121222222222111111111         11122222221111    11222345679999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      |.||||+++|.+++..+......+++.++|++++.+|++|.+++...+.++..|++.++.. ..++..+++.|+++++|+
T Consensus       173 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~  251 (509)
T 3ivr_A          173 GRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-KFDPAQAARDIEAHKVTV  251 (509)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCE
T ss_pred             CCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-ccCHHHHHHHHHHHCCcE
Confidence            9999999999999999888888889999999999999999999988666666677766666 678899999999999999


Q ss_pred             EEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCCC
Q 010114          240 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS  319 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g  319 (518)
                      +.++|+++..+++..  ...+++++|.++.+|++   +..+.+.+.++++++++.||+||++++.+......  ...++|
T Consensus       252 ~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~--~~~~~G  324 (509)
T 3ivr_A          252 MAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD--RPKSAG  324 (509)
T ss_dssp             EEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG--STTSCC
T ss_pred             EEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc--CCCccc
Confidence            999999999999876  45568899999999987   77778888887899999999999998765544322  234599


Q ss_pred             cccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEE
Q 010114          320 TATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV  398 (518)
Q Consensus       320 ~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~  398 (518)
                      .|+++++++|+|++|++++.|+  .|||++ ++.++.+|  +.+++.+...+       .++||+|||+|++|+||++++
T Consensus       325 ~p~~~~~~~i~d~~~~~~~~g~--~GEl~v~g~~~~~gY--~~~~~~t~~~f-------~~g~~~TGDl~~~~~dG~l~~  393 (509)
T 3ivr_A          325 RPLFWRTVAVVDAEDRPLPPGE--VGEIVLRGPTVFKGY--WNNAAATQHAF-------RNGWHHTGDMGRFDADGYLFY  393 (509)
T ss_dssp             EECTTCEEEEECTTSCBCCTTC--CEEEEEESTTSCCEE--TTCHHHHHHHT-------GGGSEEEEEEEEECTTSCEEE
T ss_pred             ccCCCcEEEEECCCCCCCCCCC--ceEEEEecCCccccc--cCCHHHhHHHh-------hcCCcccccEEEECCCceEEE
Confidence            9999999999999999999999  699999 77666653  22333333333       257999999999999999999


Q ss_pred             eecc--CCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          399 QGRA--DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       399 ~gR~--~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      .||.  +|+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.+.+++++.++...+.+++.++    ++++|
T Consensus       394 ~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~l~~~----l~~~L  467 (509)
T 3ivr_A          394 AGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS-EAIKAVCVCKPGESIAADALAEF----VASLI  467 (509)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             eCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-cEEEEEEEeCCCCCCCHHHHHHH----HHhhC
Confidence            9999  999999999999999999997 9999999999999998888 88999999887655555555555    66789


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      +.|++|..|+++++||+|++||++|++|++++++.-.
T Consensus       468 ~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~  504 (509)
T 3ivr_A          468 ARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH  504 (509)
T ss_dssp             -------------------------------------
T ss_pred             cccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence            9999999999999999999999999999999976543

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2.2e-70  Score=574.41  Aligned_cols=477  Identities=18%  Similarity=0.203  Sum_probs=387.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus        51 lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~  130 (617)
T 3rg2_A           51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADR  130 (617)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCc-eeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGT  158 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  158 (518)
                      ...... ............... .......         .....+.+.......     ........++++++++|||||
T Consensus       131 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~ii~TSGS  195 (617)
T 3rg2_A          131 QHALFS-GDDFLNTFVTEHSSIRVVQLLND---------SGEHNLQDAINHPAE-----DFTATPSPADEVAYFQLSGGT  195 (617)
T ss_dssp             TSGGGS-SSHHHHHHHHHSTTCCEEEEETC---------CSTTBHHHHHHSCCS-----SCCCCCCCTTSEEEEEECCCS
T ss_pred             cccccc-cHHHHHHHhhcCCccceeeeccc---------ccccchhhhhccccc-----ccCCCCCCCCCeEEEEECCCc
Confidence            532100 001111222211111 1111110         111123333332221     112233457899999999999


Q ss_pred             CCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhH--HHHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114          159 TGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATLALYQGSPLERSFGKFVQDAG  236 (518)
Q Consensus       159 TG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  236 (518)
                      ||.||||+++|.+++..+......+++.++|++++.+|++|.+++.  .++.+++.|+++++.+ ..++..+++.+++++
T Consensus       196 TG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~  274 (617)
T 3rg2_A          196 TGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQ  274 (617)
T ss_dssp             SSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTT
T ss_pred             CCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhC
Confidence            9999999999999999998888888999999999999999998876  4889999999999987 467888999999999


Q ss_pred             ccEEEechHHHHHHHhcccCC--CCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcc
Q 010114          237 VTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA  314 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~~~--~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~  314 (518)
                      +|++.++|+++..|++.....  ..+++++|.+++|||++++++.+++.+.+ ++++++.||+||++..+..........
T Consensus       275 ~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~  353 (617)
T 3rg2_A          275 VNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDSAEKI  353 (617)
T ss_dssp             CCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSCHHHH
T ss_pred             CcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccCCCccccc
Confidence            999999999999998764332  33788999999999999999999998776 689999999999986554443333334


Q ss_pred             cCCCCccc-ccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          315 FGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       315 ~~~~g~~~-~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      ..++|.|+ ++.+++|+|+++++++.|+  +|||++ ++.+..+|  +.+++.+...|      ..++||+|||+|++++
T Consensus       354 ~~~~G~p~~~~~~~~i~d~~~~~~p~G~--~GEl~i~G~~v~~GY--~~~p~~t~~~f------~~~~~yrTGDl~~~~~  423 (617)
T 3rg2_A          354 IHTQGYPMCPDDEVWVADAEGNPLPQGE--VGRLMTRGPYTFRGY--YKSPQHNASAF------DANGFYCSGDLISIDP  423 (617)
T ss_dssp             HHCCCEESCTTCEEEEECTTSCBCCTTC--CEEEEEECSSSCSCC--TTCHHHHHHHB------CTTSCEEEEEEEEECT
T ss_pred             ccCCCccCCCCceEEEECCCCCCCCCCC--ceEEEecCccccchh--cCChhhhhhcc------CCCCceecCceEEEcC
Confidence            56889997 7889999999999999999  699999 77776653  33444444444      3457999999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      ||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++++..+  ..+.+++.+.    +
T Consensus       424 dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~--~~~~~~l~~~----l  495 (617)
T 3rg2_A          424 EGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELMG-EKSCAYLVVKE--PLRAVQVRRF----L  495 (617)
T ss_dssp             TSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS--CCCHHHHHHH----H
T ss_pred             CceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-eeEEEEEEeCC--CCCHHHHHHH----H
Confidence            9999999999999999999999999999997 9999999999999888877 88999998876  3455555555    5


Q ss_pred             Hh-ccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          473 QS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       473 ~~-~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      .+ .|+.|++|..++++++||+|++||++|++|++++.+..
T Consensus       496 ~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~  536 (617)
T 3rg2_A          496 REQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA  536 (617)
T ss_dssp             HTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred             HhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence            55 69999999999999999999999999999999887654

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.2e-70  Score=573.96  Aligned_cols=455  Identities=19%  Similarity=0.171  Sum_probs=365.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus        53 lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~  132 (620)
T 4dg8_A           53 VDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCS  132 (620)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECC
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecC
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999765


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ........            ....                  .+.....      ...........++++++++||||||
T Consensus       133 ~~~~~~~~------------~~~~------------------~~~~~~~------~~~~~~~~~~~~~d~a~iiyTSGST  176 (620)
T 4dg8_A          133 TTPTPANG------------LPCV------------------PVRHLPA------APASVARPCFAADQIAYINFSSGTT  176 (620)
T ss_dssp             SSCCCCTT------------SCEE------------------EGGGCCC------CCCCSSCCCCCTTSEEEEEEEBSSS
T ss_pred             cccccccC------------Ccee------------------eeccCCc------CCccccCCCCCCCCeEEEEECCCcc
Confidence            32100000            0000                  0000000      0111112234579999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC-CCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t  238 (518)
                      |.||||+++|.++.+.+.. ...+++.++|++++.+|++|+.++..++.++..|+++++.+. ..++..+.+.|+++++|
T Consensus       177 G~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt  255 (620)
T 4dg8_A          177 GRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGAD  255 (620)
T ss_dssp             SSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCC
T ss_pred             ccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCc
Confidence            9999999999999887765 456788999999999999999999889999999999998743 45788999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCC---CCCccc
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL---LQPQAF  315 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~---~~~~~~  315 (518)
                      ++.++|++++.+++..   ..++++||.+++|||+++++..+.+.+.+++++++|.||+||+++.++....   ......
T Consensus       256 ~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~  332 (620)
T 4dg8_A          256 SAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD  332 (620)
T ss_dssp             EEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSS
T ss_pred             EEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCC
Confidence            9999999999998753   3468899999999999999988888777778899999999999875443222   123456


Q ss_pred             CCCCcccccccEEEECCCCCC-CCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCc--eeccccceEEEe
Q 010114          316 GAFSTATMTAGLVILDECGVP-YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGM--CLRRHGDIIKRT  391 (518)
Q Consensus       316 ~~~g~~~~~~~~~i~~~~g~~-~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~TGD~~~~~  391 (518)
                      .++|+|+++++++|+|+++.+ ++.|+  .|||++ ++++..+|  +.+++.+...|..++. .+.  +||+|||+|+++
T Consensus       333 ~~iG~p~~~~~~~i~d~~~~~~~~~g~--~GEl~i~G~~v~~GY--~~~p~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~  407 (620)
T 4dg8_A          333 IPIGKAIAGTAVLLLDEHGQEIAEPDR--AGEIVAFGAGLAQGY--RNDAARTRASFVELPY-RGRLLRAYRTGDRARYD  407 (620)
T ss_dssp             CCCBEECTTEEEEEECTTSCBCCSSSC--CEEEEEEETTCCSEE--TTCHHHHHHHEEEEEE-TTEEEEEEEEEEEEEEC
T ss_pred             CCceecccCcEEEEECccCCCCCCCCC--ceEEEEecccccccc--CCChhhhhhhhccCCC-CCCCceEEeCCCEEEEC
Confidence            789999999999999999888 78888  699999 77777654  3344555555544332 333  799999999999


Q ss_pred             cCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHH
Q 010114          392 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA  471 (518)
Q Consensus       392 ~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~  471 (518)
                      +||+|+++||.||+||++|++|+|.|||++|. +||+|.+++|++.+++..+  .++++++...      +++.+    .
T Consensus       408 ~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~~--~lv~~~~~~~------~~~~~----~  474 (620)
T 4dg8_A          408 EQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNGVK--QLLCAWTGKA------DASPQ----A  474 (620)
T ss_dssp             TTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETTEE--EEEEEEEECT------TCCCH----H
T ss_pred             CCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCCCce--EEEEEEecCh------HHHHH----H
Confidence            99999999999999999999999999999998 9999999999998776443  4444444322      12222    3


Q ss_pred             HHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          472 IQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       472 ~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      +.++|+.|++|..++++++||+|++||++|++|++++.+...
T Consensus       475 l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~  516 (620)
T 4dg8_A          475 LLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPLE  516 (620)
T ss_dssp             HHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC-
T ss_pred             HHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccccc
Confidence            556899999999999999999999999999999998865543

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=3.8e-71  Score=609.42  Aligned_cols=485  Identities=20%  Similarity=0.236  Sum_probs=309.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++++++.++++.++++++|+++
T Consensus        89 ~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  168 (979)
T 3tsy_A           89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEA  168 (979)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECS
T ss_pred             EEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEECh
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999997


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      ..+...........+.+.   .....+...+...+.++......  ...........++++++|+||||||
T Consensus       169 ~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTT  237 (979)
T 3tsy_A          169 RYV------DKIKPLQNDDGVVIVCID---DNESVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDVVALPYSSGTT  237 (979)
T ss_dssp             TTT------TTSHHHHHTSCCEEEECC---CCTTSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSEEECCBCCCSS
T ss_pred             HHH------HHHHHHhhcCCceEEEeC---CcccccCCcccccHHHHhhcccc--ccccCCcCCCCccceEEEEeCCCCC
Confidence            543      233333322222222221   11112223344556665543321  1112223345679999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccc----cccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQD  234 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~  234 (518)
                      |.||||+++|++++.++.....    .+.+.++|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.+++
T Consensus       238 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~  316 (979)
T 3tsy_A          238 GLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEINLLLELIQR  316 (979)
T ss_dssp             SSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHHHHHHHHHH
T ss_pred             CCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHHHHHHHHHH
Confidence            9999999999999887765432    456789999999999999999966 788999999999987 5678999999999


Q ss_pred             cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecC----CC
Q 010114          235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS----LL  310 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~----~~  310 (518)
                      +++|++.++|+++..|++.......++++||.+++||+++++++.+++.+.++++++++.||+||+++++..+.    ..
T Consensus       317 ~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~  396 (979)
T 3tsy_A          317 CKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEP  396 (979)
T ss_dssp             HTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSC
T ss_pred             hCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCc
Confidence            99999999999999999988777888999999999999999999999999888899999999999997655442    12


Q ss_pred             CCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceE
Q 010114          311 QPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII  388 (518)
Q Consensus       311 ~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~  388 (518)
                      .....+++|.|+++++++|+| ++|++++.|+  .|||++ ++.+..+|  +.+++.+...+      ..++||+|||+|
T Consensus       397 ~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~--~GEl~i~g~~v~~GY--~~~p~~t~~~f------~~~g~~~TGDl~  466 (979)
T 3tsy_A          397 FPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQ--PGEICIRGHQIMKGY--LNNPAATAETI------DKDGWLHTGDIG  466 (979)
T ss_dssp             CCCCTTCCCEECSSCEEEEECTTSCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEE
T ss_pred             cccCCCCcCcccCCcEEEEEeCCCCCCCCCCC--ccEEEEECCCccccc--cCChhhhhhhc------cCCCcEEcCCEE
Confidence            234568899999999999999 6799999999  599999 77776653  23333333333      356799999999


Q ss_pred             EEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHH
Q 010114          389 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF  468 (518)
Q Consensus       389 ~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~  468 (518)
                      ++|+||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+..++...+.++++++ 
T Consensus       467 ~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~-  543 (979)
T 3tsy_A          467 LIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSEDDVKQF-  543 (979)
T ss_dssp             EECTTSCEEEEEESCC----------------------------------------------------------------
T ss_pred             EEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEEECCCCCCCHHHHHHH-
Confidence            99999999999999999999999999999999997 9999999999999988888 89999999877655555555554 


Q ss_pred             HHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          469 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       469 ~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                         ++++|+.|++|..++++++||+|++||++|++|++++.+.+.
T Consensus       544 ---l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~  585 (979)
T 3tsy_A          544 ---VSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG  585 (979)
T ss_dssp             ---------------------------------------------
T ss_pred             ---HHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcC
Confidence               667899999999999999999999999999999999987654

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3.2e-69  Score=553.03  Aligned_cols=470  Identities=16%  Similarity=0.182  Sum_probs=352.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF   80 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~   80 (518)
                      +||+||.++++++|++|++.  +||+|+++++|++++++++|||+++|++++|+++.++++++.++++.++++++|+++.
T Consensus        27 ~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~  104 (501)
T 3ipl_A           27 YTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLP  104 (501)
T ss_dssp             EEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSC
T ss_pred             EEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccc
Confidence            69999999999999999986  9999999999999999999999999999999999999999999999999999999875


Q ss_pred             hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCCC
Q 010114           81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG  160 (518)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  160 (518)
                      .....      ....................  .........+......................++++++++|||||||
T Consensus       105 ~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG  176 (501)
T 3ipl_A          105 LELRG------FQIVSLDDIEFAGRDITTNG--LLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTG  176 (501)
T ss_dssp             CCCTT------SEEEETTC----------------------------------CCHHHHTCCCCCTTSEEEEEECCTTTS
T ss_pred             ccccc------ccccccccceeeeeeccccc--ccccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCC
Confidence            43211      11110000000000000000  00000000000000000000000011122346799999999999999


Q ss_pred             CCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEE
Q 010114          161 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL  240 (518)
Q Consensus       161 ~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l  240 (518)
                      .||+|+++|.++...+......+++.++|++++.+|++|.+|+..++.+++.|+++++.+ ..++..+++.++++++|++
T Consensus       177 ~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~  255 (501)
T 3ipl_A          177 PQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHI  255 (501)
T ss_dssp             CCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEE
T ss_pred             CCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEE
Confidence            999999999999999888888889999999999999999999988899999999999987 5788999999999999999


Q ss_pred             EechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC-CCcccCCCC
Q 010114          241 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFS  319 (518)
Q Consensus       241 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g  319 (518)
                      +++|++++.|++.......   ++|.+++|||++++++.+++.+.  ++++++.||+||+++.+...... .....+++|
T Consensus       256 ~~~P~~~~~l~~~~~~~~~---~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  330 (501)
T 3ipl_A          256 SLVPQTLNWLMQQGLHEPY---NLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVG  330 (501)
T ss_dssp             EECHHHHHHHHHHTCCSCT---TCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred             EchHHHHHHHHhcCCCCcC---cccEEEEeCCCCCHHHHHHHHHh--CCCEeccccccccccceeecCccccccCCCCCC
Confidence            9999999999987644332   89999999999999999988763  78899999999998765544332 234567899


Q ss_pred             cccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceEEE
Q 010114          320 TATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV  398 (518)
Q Consensus       320 ~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~  398 (518)
                      .|+++++++|+|++     .++  .|||++ ++.++.+|.  .+++.+.. +       .++||+|||+|++|+||++++
T Consensus       331 ~p~~~~~~~i~d~~-----~~~--~GEl~v~g~~~~~gY~--~~~~~t~~-~-------~~g~~~TGDl~~~~~~G~l~~  393 (501)
T 3ipl_A          331 MPSANVDVKIKNPN-----KEG--HGELMIKGANVMNGYL--YPTDLTGT-F-------ENGYFNTGDIAEIDHEGYVMI  393 (501)
T ss_dssp             EECTTCEEEEESCC-----SSC--CEEEEEESTTSCSCCS--BSTTCCCS-E-------ETTEEEEEEEEEECTTSCEEE
T ss_pred             CCCCCcEEEEecCC-----CCC--ccEEEEeccchhhhhC--cChhhcch-h-------cCCceecCCEEEEcCCCeEEE
Confidence            99999999999975     344  599999 777766543  23333322 2       356999999999999999999


Q ss_pred             eeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhccCC
Q 010114          399 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP  478 (518)
Q Consensus       399 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~  478 (518)
                      +||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++++...  ..+.+++.++    +.++|+.
T Consensus       394 ~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~a~v~~~~--~~~~~~l~~~----l~~~L~~  465 (501)
T 3ipl_A          394 YDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPKLYFVSES--DISKAQLIAY----LSKHLAK  465 (501)
T ss_dssp             EEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS--CCCHHHHHHH----HHHHSCG
T ss_pred             EccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEEEEEEeCC--CCCHHHHHHH----HHhhCcc
Confidence            9999999999999999999999997 9999999999999998888 88999988644  3455555555    6678999


Q ss_pred             ccccceEEEecCCCCCCCchhHHHHHHHHHhcc
Q 010114          479 LFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       479 ~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~  511 (518)
                      |++|..|+++++||+|++||++|++|++..+++
T Consensus       466 ~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          466 YKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             GGSCSEEEECSSCC-------------------
T ss_pred             ccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence            999999999999999999999999999988765

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=6.8e-70  Score=557.05  Aligned_cols=446  Identities=21%  Similarity=0.233  Sum_probs=348.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEechh
Q 010114            1 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF   80 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~   80 (518)
                      +||+||.++++++|+.|.    .|++|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.
T Consensus        49 ~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~  124 (505)
T 3nyq_A           49 LTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPD  124 (505)
T ss_dssp             EEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTT
T ss_pred             eeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCc
Confidence            699999999999998874    4899999999999999999999999999999999999999999999999999999864


Q ss_pred             hhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCCC
Q 010114           81 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG  160 (518)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  160 (518)
                      ..     ..   .....  .....+.                       ..   ...........++++++++|||||||
T Consensus       125 ~~-----~~---~~~~~--~~~~~~~-----------------------~~---~~~~~~~~~~~~~d~a~i~~TSGTTG  168 (505)
T 3nyq_A          125 AE-----LP---PALGA--LERVDVD-----------------------VR---ARGAVPEDGADDGDPALVVYTSGTTG  168 (505)
T ss_dssp             CC-----CC---GGGTT--SEEEECC-----------------------TT---CCCCCCCCCCCTTSEEEEEEECCSSS
T ss_pred             cc-----cc---hhhcc--ccccccc-----------------------cc---cccCCCCCCCCCCCeEEEEeCCCCcC
Confidence            10     00   00000  0000000                       00   00011122345689999999999999


Q ss_pred             CCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCccE
Q 010114          161 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV  239 (518)
Q Consensus       161 ~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~  239 (518)
                      .||||+++|.++...+......+++.++|++++.+|++|..++.. ++.++..|+++++.+ ..++..+++.+ ++++|+
T Consensus       169 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~  246 (505)
T 3nyq_A          169 PPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATM  246 (505)
T ss_dssp             SCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCE
T ss_pred             CCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeE
Confidence            999999999999999888888889999999999999999999875 889999999999876 56778888888 889999


Q ss_pred             EEechHHHHHHHhcccCC---CCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccC
Q 010114          240 LGTVPSLVKAWRNTNCLE---GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG  316 (518)
Q Consensus       240 l~~~P~~~~~l~~~~~~~---~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~  316 (518)
                      ++++|+++..+++.....   ...++++|.+++||+++++++.+++.+.+ ++++++.||+||+++.+.... ......+
T Consensus       247 ~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~-~~~~~~~  324 (505)
T 3nyq_A          247 LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRA-DGEPRAG  324 (505)
T ss_dssp             EEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTT
T ss_pred             EEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCC-CCCCCCC
Confidence            999999999998753221   23577899999999999999999998775 688999999999987655433 3445678


Q ss_pred             CCCcccccccEEEECCCCCCCCC---CCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          317 AFSTATMTAGLVILDECGVPYPD---DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       317 ~~g~~~~~~~~~i~~~~g~~~~~---~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      ++|+|+++++++|+|++|++++.   |+  +|||++ ++.++.+|  +.+++.+...|      ..++||+|||+|++|+
T Consensus       325 ~vG~p~~~~~~~i~d~~g~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~y~TGDl~~~~~  394 (505)
T 3nyq_A          325 TVGVPLPGVELRLVEEDGTPIAALDGES--VGEIQVRGPNLFTEY--LNRPDATAAAF------TEDGFFRTGDMAVRDP  394 (505)
T ss_dssp             CCCEECTTCEEEEC-----CCCCCCSCC--CEEEEEESTTSCCEE--TTCHHHHHHTB------CTTSCEEEEEEEEECT
T ss_pred             CcccCCCCCEEEEECCCCCCcccCCCCc--eEEEEEecCchhhhh--CCChhHhhhhh------cCCCCCccCCeEEECC
Confidence            99999999999999999999886   66  699999 77766653  22333333333      2457999999999999


Q ss_pred             CceEEEeecc-CCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCC-CCCChhHHHHHHHH
Q 010114          393 GGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG-FTSQPDKLKMIFSK  470 (518)
Q Consensus       393 ~g~l~~~gR~-~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~-~~~~~~~l~~~~~~  470 (518)
                      ||+++++||. ||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|++.+. ...+.+++.+    
T Consensus       395 dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~l~a~vv~~~~~~~~~~~~l~~----  468 (505)
T 3nyq_A          395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEPDPDLG-ERIVAWIVPADPAAPPALGTLAD----  468 (505)
T ss_dssp             TSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESSTTSCCCHHHHHH----
T ss_pred             CccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEeeECCCCC-cEEEEEEEECCCCCCCCHHHHHH----
Confidence            9999999998 599999999999999999997 9999999999999998888 899999998763 3344445444    


Q ss_pred             HHHhccCCccccceEEEecCCCCCCCchhHHHHHHH
Q 010114          471 AIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD  506 (518)
Q Consensus       471 ~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~  506 (518)
                      +++++|+.|++|..|+++++||+|++||++|++|++
T Consensus       469 ~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          469 HVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             HHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred             HHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence            467789999999999999999999999999999986

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=6.5e-68  Score=554.78  Aligned_cols=475  Identities=15%  Similarity=0.128  Sum_probs=371.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccch---hHHHHHHHHHhcCceEEE
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF---AAREIATRLRVSKAKGIF   76 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~---~~~~i~~~l~~~~~~~ii   76 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.+   +.+++.++++.++++++|
T Consensus        41 ~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi  120 (590)
T 3kxw_A           41 MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVL  120 (590)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEE
T ss_pred             EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEE
Confidence            59999999999999999999 99999999999999999999999999999999999987   567899999999999999


Q ss_pred             echhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEecc
Q 010114           77 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS  156 (518)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  156 (518)
                      ++...........     .....   ....           ...+....+....     .....+....++++++++|||
T Consensus       121 ~~~~~~~~~~~~~-----~~~~~---~~~~-----------~~~~~~~~~~~~~-----~~~~~~~~~~~~d~a~i~~TS  176 (590)
T 3kxw_A          121 MIADHIKKFTADE-----LNTNP---KFLK-----------IPAIALESIELNR-----SSSWQPTSIKSNDIAFLQYTS  176 (590)
T ss_dssp             ECHHHHHHHCC----------CC---EETT-----------EEEEEGGGCCGGG-----GGGCCCCCCCTTSEEEEEECS
T ss_pred             eCHHHHHHHHHhh-----hhhcc---cccc-----------cceeechhccccc-----cccCCCCCCCCCCeEEEEeCc
Confidence            9875432111000     00000   0000           0000111111000     011122334678999999999


Q ss_pred             CCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCC---ChhHHHHHH
Q 010114          157 GTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP---LERSFGKFV  232 (518)
Q Consensus       157 GtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~---~~~~~~~~i  232 (518)
                      ||||.||||+++|.+++.++......+++.++|++++.+|++|.+|+.. ++.+++.|+++++.++..   ++..+++.|
T Consensus       177 GTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i  256 (590)
T 3kxw_A          177 GSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHI  256 (590)
T ss_dssp             SCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHH
T ss_pred             CCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHH
Confidence            9999999999999999999988888889999999999999999999987 889999999999987432   678999999


Q ss_pred             HHcCccEEEechHHHHHHHhc---ccCCCCCccchhhhhccCCCCCchhhhHhhhccc-----cCceeccccccccceeE
Q 010114          233 QDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTELSSAY  304 (518)
Q Consensus       233 ~~~~~t~l~~~P~~~~~l~~~---~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-----~~~i~~~yg~tE~~~~~  304 (518)
                      +++++|++.++|+++..+++.   ......+++++|.+++||+++++++.+++.+.++     +.++++.||+||+++.+
T Consensus       257 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  336 (590)
T 3kxw_A          257 TKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV  336 (590)
T ss_dssp             HHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred             HHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence            999999999999999998875   3345667899999999999999999999887763     34799999999999876


Q ss_pred             eecCCC--------------------------CCcccCCCCcccccccEEEECCC-CCCCCCCCCeeeeeee-cccccCC
Q 010114          305 IQGSLL--------------------------QPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FPLYLGA  356 (518)
Q Consensus       305 ~~~~~~--------------------------~~~~~~~~g~~~~~~~~~i~~~~-g~~~~~~~~~~Gel~v-~~~~~~~  356 (518)
                      +.....                          ......++|.|+++  ++|+|++ +.+++.|+  +|||++ ++.++.+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~--~GEl~v~g~~v~~G  412 (590)
T 3kxw_A          337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ--VGEIWVQSNSVAKG  412 (590)
T ss_dssp             EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB--CEEEEEESTTSCCC
T ss_pred             ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC--EEEEEEeCCccccc
Confidence            644321                          11234688999998  8888966 89999998  699999 7777766


Q ss_pred             ccccccccccceeeeCCCCCC--CceeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccc--ee
Q 010114          357 SDRLLNADHEEVYFRGMPMYK--GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL--ET  432 (518)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~--~~  432 (518)
                      |  +.+++.+...|.+.+...  +.+||+|||+|++| ||+|+++||.||+||++|++|+|.+||++|...+|.|.  ++
T Consensus       413 Y--~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~  489 (590)
T 3kxw_A          413 Y--WNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKC  489 (590)
T ss_dssp             B--TTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEE
T ss_pred             c--cCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccE
Confidence            4  345555555555433333  44599999999999 99999999999999999999999999999943899998  79


Q ss_pred             eEEEeCCCCCCccEEEEEEEecCCC--CCChhHHHHHHHHHHHhccCCccccc-eEEEe--cCCCCCCCchhHHHHHHHH
Q 010114          433 AAISVSPAGGGPEVLVIFVVLKKGF--TSQPDKLKMIFSKAIQSKLNPLFKVS-LVKVV--PEFPRTASNKLLRRVLRDQ  507 (518)
Q Consensus       433 ~vv~~~~~~~g~~~~~~~v~~~~~~--~~~~~~l~~~~~~~~~~~l~~~~~p~-~i~~v--~~~P~t~~GKv~R~~l~~~  507 (518)
                      +|++++++. + +.+++++++.++.  ..+.+++.+.+++.+.+.   ++.|. .++++  ++||+|++||++|++|+++
T Consensus       490 ~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~  564 (590)
T 3kxw_A          490 AAFVIQEEH-E-YKLTVMCEVKNRFMDDVAQDNLFNEIFELVYEN---HQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKH  564 (590)
T ss_dssp             EEEEEEETT-E-EEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHH---HSCCCCEEEEEETTCSCCCSCHHHHHHHHHHH
T ss_pred             EEEEecCCC-C-ceEEEEEEeccccccchhHHHHHHHHHHHHHHH---cCCceeEEEEECCCccCcCCCcHHHHHHHHHH
Confidence            999988765 4 7788888887653  234456666666555432   45553 45555  7999999999999999999


Q ss_pred             Hhcc
Q 010114          508 IKHE  511 (518)
Q Consensus       508 ~~~~  511 (518)
                      +.++
T Consensus       565 ~~~~  568 (590)
T 3kxw_A          565 LLDK  568 (590)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            8754

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=5.7e-68  Score=598.10  Aligned_cols=463  Identities=18%  Similarity=0.200  Sum_probs=384.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||+++++++|+.|++. +++||+|+++++|++++++++|||+++|++++||+|.++.+++.+++++++++++|+++
T Consensus       490 lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~  569 (1304)
T 2vsq_A          490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQ  569 (1304)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECS
T ss_pred             EcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECc
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      .........+       . ....+.+..               .... ....      ........++++++|+||||||
T Consensus       570 ~~~~~~~~~~-------~-~~~~~~~~~---------------~~~~-~~~~------~~~~~~~~~~~~ayiiyTSGST  619 (1304)
T 2vsq_A          570 EMKEQAAELP-------Y-TGTTLFIDD---------------QTRF-EEQA------SDPATAIDPNDPAYIMYTSGTT  619 (1304)
T ss_dssp             TTCTTSTTCC-------C-CSEEEESSC---------------GGGG-GSCS------SCCCCCCCTTSEEEEEEECCSS
T ss_pred             chhhhhhccC-------C-CCcEEEecc---------------cccc-cccc------CCCCCCCCCCCeEEEEeCCCCC
Confidence            5321110000       0 001111100               0000 0000      1112234578999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~  237 (518)
                      |.||||+++|+++.+. ......+++.++|+++...|++|+.+...++.++..|+++++.+..  .++..+.+.|+++++
T Consensus       620 G~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~v  698 (1304)
T 2vsq_A          620 GKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENV  698 (1304)
T ss_dssp             SSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTC
T ss_pred             CCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCC
Confidence            9999999999999876 4455677889999999999999999988899999999999998753  467899999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC---CCcc
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQA  314 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~  314 (518)
                      |+++++|++++.+.+..   ...+++||.+++|||+++++..+.+.+.+++.+++|.||+||+++.++.....   ....
T Consensus       699 t~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~  775 (1304)
T 2vsq_A          699 NVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSIS  775 (1304)
T ss_dssp             CEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCS
T ss_pred             cEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCC
Confidence            99999999999997653   23467899999999999999999888887778899999999998754433222   2234


Q ss_pred             cCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecC
Q 010114          315 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  393 (518)
Q Consensus       315 ~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  393 (518)
                      ..++|+|+++++++|+|++++++|.|+  .|||+| |+++..+|  +.+++.+...|..+++.++++||+|||+|++++|
T Consensus       776 ~~~iG~p~~~~~~~i~d~~~~~~p~G~--~GEl~i~G~~v~~GY--~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~d  851 (1304)
T 2vsq_A          776 SLPIGKPISNASVYILNEQSQLQPFGA--VGELCISGMGVSKGY--VNRADLTKEKFIENPFKPGETLYRTGDLARWLPD  851 (1304)
T ss_dssp             SCCCBEECTTEEEEEECTTSCBCCTTC--CEEEEEEETTCCCCB--TTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTT
T ss_pred             CCCCceeeCCCEEEEECCCcCCCCCCC--ceEEEEeccccCccc--cCCcccchhhhccCCCCCCCeeEecCCeEEEcCC
Confidence            568999999999999999999999999  699999 77777664  3455666666776777788999999999999999


Q ss_pred             ceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHH
Q 010114          394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  473 (518)
Q Consensus       394 g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  473 (518)
                      |.|+++||.||+||++|++|+|.|||.+|. +||+|.+++|++.+++..+ +.+++|++..+  ..+.+++++    ++.
T Consensus       852 G~l~~~GR~d~qvki~G~rie~~eIE~~l~-~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~--~~~~~~l~~----~l~  923 (1304)
T 2vsq_A          852 GTIEYAGRIDDQVKIRGHRIELEEIEKQLQ-EYPGVKDAVVVADRHESGD-ASINAYLVNRT--QLSAEDVKA----HLK  923 (1304)
T ss_dssp             SCEEEEEEGGGEEEETTEEEEHHHHHHHHH-HSSSCCEEEEEEECCSSSC-CEEEEEEECSS--SSCHHHHHH----HHH
T ss_pred             CeEEEEcCCCCEEEECCEeeCHHHHHHHHH-hCCCCceEEEEEEecCCCC-EEEEEEEeCCC--CCCHHHHHH----HHH
Confidence            999999999999999999999999999997 9999999999999887777 89999998765  344455544    467


Q ss_pred             hccCCccccceEEEecCCCCCCCchhHHHHHHHHHh
Q 010114          474 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK  509 (518)
Q Consensus       474 ~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~  509 (518)
                      ++||.||+|..++++++||+|++||++|++|++...
T Consensus       924 ~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~  959 (1304)
T 2vsq_A          924 KQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ  959 (1304)
T ss_dssp             HHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred             HhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence            789999999999999999999999999999876544

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.5e-68  Score=555.57  Aligned_cols=467  Identities=19%  Similarity=0.210  Sum_probs=281.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|+.|++. + +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++
T Consensus        56 ~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~  134 (562)
T 3ite_A           56 WTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCD  134 (562)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcc
Confidence            59999999999999999999 8 799999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ........           .....++.           .....+.+.+.....     ........++++++++||||||
T Consensus       135 ~~~~~~~~-----------~~~~~~~~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTT  187 (562)
T 3ite_A          135 NNFDGVEL-----------PPETKVLD-----------TKNQSFIENLSTQDT-----SDILNNYPENLDAYLLYTSGST  187 (562)
T ss_dssp             TTTTTCCC-----------CTTCEEEE-----------TTCHHHHHHHHHSCC-----SCCCCCCCTTSEEEEEEECC--
T ss_pred             cccccccc-----------Cccceeec-----------ccchhhhhhcccccc-----cccccCCCCCCcEEEEECCCCC
Confidence            43211100           00001110           011122222222211     1111223468899999999999


Q ss_pred             CCCceEEeccchhHHHhhhccc--------cccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHH
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWA--------HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKF  231 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~--------~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~  231 (518)
                      |.||||+++|.++...+.....        .+.+...+++++..|++|..++..++.++..|+++++.+....+..+.+.
T Consensus       188 G~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~  267 (562)
T 3ite_A          188 GTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRT  267 (562)
T ss_dssp             -CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHH
T ss_pred             CCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHH
Confidence            9999999999999887654332        24577889999999999999988888999999999887644445778899


Q ss_pred             HHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCC
Q 010114          232 VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ  311 (518)
Q Consensus       232 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~  311 (518)
                      ++++++|++.++|++++.+...    ..++++||.+++||+++++++.+++.+.+ ++++++.||+||++..+.......
T Consensus       268 i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~  342 (562)
T 3ite_A          268 FRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEVTIGCSAGRILP  342 (562)
T ss_dssp             HHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEEECCGGGCSCSEEEECCT
T ss_pred             HHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEeeccchheeeeeeeeecC
Confidence            9999999999999998877433    34688999999999999999999988654 789999999999987655555545


Q ss_pred             CcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEE
Q 010114          312 PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK  389 (518)
Q Consensus       312 ~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~  389 (518)
                      .....++|.|+++++++|+| +.+.+++.|+  .|||++ ++.++.+|  +.+++.+...+     .++++||+|||+|+
T Consensus       343 ~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~p~~t~~~~-----~~g~~w~~TGDlg~  413 (562)
T 3ite_A          343 DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGM--AGELVIEGSLVANGY--LNRPDAKGFCD-----INGRKMYRTGDIVR  413 (562)
T ss_dssp             TSCTTEEEEECTTCEEEEECTTSSCBCCTTS--CEEEEEESTTSCCEE--SSCTTCCSEEE-----ETTEEEEEEEEEEE
T ss_pred             CCCCccccccCCCCeEEEEeCCCCCCCCCCC--ceEEEEeccccchhh--CCCcccccccc-----CCCCEEEecCCEEE
Confidence            55667899999999999999 5688899999  699999 77766653  22333333222     35678999999999


Q ss_pred             EecCceEEEeeccCCeeeeCceecchhHHHHHHhhcC-cccceeeEEEeCCCCCCccEEEEEEEecCCCCC---------
Q 010114          390 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-ESILETAAISVSPAGGGPEVLVIFVVLKKGFTS---------  459 (518)
Q Consensus       390 ~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~-~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~---------  459 (518)
                      +|+||+|+++||.||+||++|++|+|.+||++|. ++ |.+.+++|++.+++..+ +...++++...+...         
T Consensus       414 ~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~  491 (562)
T 3ite_A          414 MDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLLNHPGTS-KQFLVSFVASSGAAVRGELRWINE  491 (562)
T ss_dssp             ECTTSCEEEEEEC-------------------------------------------------------------------
T ss_pred             EcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEecCCCCc-ceEEEEEEeccccccccccccccc
Confidence            9999999999999999999999999999999998 65 88888888888887777 444444444432221         


Q ss_pred             ChhHHHHHHHHHHHhccCCccccceEEEecCCCCC-CCchhHHHHHHHHHhcc
Q 010114          460 QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT-ASNKLLRRVLRDQIKHE  511 (518)
Q Consensus       460 ~~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t-~~GKv~R~~l~~~~~~~  511 (518)
                      +.+.+.+.++++++++|+.|++|+.|+++++||+| ++||++|++|++++++.
T Consensus       492 ~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~  544 (562)
T 3ite_A          492 NYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTL  544 (562)
T ss_dssp             -----------------------------------------------------
T ss_pred             chhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhcc
Confidence            12234456777788999999999999999999998 89999999999998753

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=2.3e-54  Score=421.28  Aligned_cols=317  Identities=17%  Similarity=0.142  Sum_probs=266.8

Q ss_pred             CCEEEEEeccCCCCCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChh
Q 010114          147 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER  226 (518)
Q Consensus       147 ~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  226 (518)
                      |++++|+|||||||.||||+++|+++++++......++++++|++++.+|++|++|+..++.++..|+++++.++..+  
T Consensus        37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~--  114 (358)
T 4gs5_A           37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN--  114 (358)
T ss_dssp             TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC--
T ss_pred             CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc--
Confidence            789999999999999999999999999998888888999999999999999999999888889999999999876543  


Q ss_pred             HHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEee
Q 010114          227 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ  306 (518)
Q Consensus       227 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~  306 (518)
                       .++.|+++++|++.++|++++.+++... ...++++||.+++||+++++++.+++.+.  +.++++.||+||+++.+..
T Consensus       115 -~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~~  190 (358)
T 4gs5_A          115 -PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVAL  190 (358)
T ss_dssp             -TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEEE
T ss_pred             -HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceeec
Confidence             3567889999999999999999988764 44578999999999999999999998764  6889999999999876554


Q ss_pred             cCCCCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCceeccccc
Q 010114          307 GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGD  386 (518)
Q Consensus       307 ~~~~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD  386 (518)
                      ... .....+.+|.+.|++.+.+.+            .||+++....                       ..++||+|||
T Consensus       191 ~~~-~~~~~g~~~~~~pgv~~~~~~------------~Gel~~~g~~-----------------------~~~g~~~TGD  234 (358)
T 4gs5_A          191 KAL-NGPEASELYVFLPGIQYGVDE------------RGCLHISGAV-----------------------TNGQTVQTND  234 (358)
T ss_dssp             EEC-SSTTCCSCEEECTTCEEEECT------------TSEEEEESGG-----------------------GTTCCEEEEE
T ss_pred             ccc-cccccceeeccCCCeEEEecC------------cCceEEeccc-----------------------ccCcceecCC
Confidence            443 334567888999999887644            3898873211                       2346899999


Q ss_pred             eEEEecCceEEEeeccCCeeeeCceecchhHHHHHHh--hcCcccceeeEE-EeCCCCCCccEEEEEEEecCCCCCChhH
Q 010114          387 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD--QADESILETAAI-SVSPAGGGPEVLVIFVVLKKGFTSQPDK  463 (518)
Q Consensus       387 ~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~--~~~~~v~~~~vv-~~~~~~~g~~~~~~~v~~~~~~~~~~~~  463 (518)
                      +|++|+|| ++++||.||+||++|++|+|.+||++|.  ..||.|.+++|+ +.+++..| +.++++|+..+     .+.
T Consensus       235 lg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~-----~~~  307 (358)
T 4gs5_A          235 LVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAM-----PEA  307 (358)
T ss_dssp             EEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCC-----CHH
T ss_pred             ccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCC-----CCc
Confidence            99999988 5567999999999999999999998773  158999999887 56677777 88888887543     244


Q ss_pred             HHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          464 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       464 l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      ..+.++++++++|+.|++|+.|+++++||+|++|||+|++|++++++..
T Consensus       308 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~  356 (358)
T 4gs5_A          308 LTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS  356 (358)
T ss_dssp             HHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred             CHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence            5566777788899999999999999999999999999999999987654

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=3.3e-52  Score=425.05  Aligned_cols=368  Identities=17%  Similarity=0.144  Sum_probs=280.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEeccc---chhHHHHHHHHHhcCceEEE
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD---SFAAREIATRLRVSKAKGIF   76 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~---~~~~~~i~~~l~~~~~~~ii   76 (518)
                      +||+||.++++++|++|++. + +||+|+++++|++++++++|||+++|++++|+++   .++.+++.+++++++++++|
T Consensus        59 ~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi  137 (480)
T 3t5a_A           59 LTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAIL  137 (480)
T ss_dssp             EEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEE
T ss_pred             EcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEE
Confidence            59999999999999999999 8 9999999999999999999999999999999999   78899999999999999999


Q ss_pred             echhhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEecc
Q 010114           77 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS  156 (518)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  156 (518)
                      +++...      ..+...........              ....+.+..+...     ...........++++++|+|||
T Consensus       138 ~~~~~~------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~a~i~~TS  192 (480)
T 3t5a_A          138 TTSSAV------DDVVQHVARRPGES--------------PPSIIEVDLLDLD-----APNGYTFKEDEYPSTAYLQYTS  192 (480)
T ss_dssp             ECTTTH------HHHHHTCC--------------------CCEEEEGGGSCTT-----CC---CCCCSSCCSEEEEECC-
T ss_pred             eChhHH------HHHHHHHhcccccc--------------ccceeEecccccc-----cccCCCCCCCCCCceEEEEecC
Confidence            987532      11111111110000              0000011111000     0111222334678999999999


Q ss_pred             CCCCCCceEEeccchhHHHhhhccccccCCC------CcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChh
Q 010114          157 GTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLER  226 (518)
Q Consensus       157 GtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~------~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~  226 (518)
                      ||||.||||+++|.+++.++......+.+..      +|++++.+|++|.+|+.. ++.+++.|+++++.++.   .++.
T Consensus       193 GTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~  272 (480)
T 3t5a_A          193 GSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPA  272 (480)
T ss_dssp             -----CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTH
T ss_pred             CCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHH
Confidence            9999999999999999998887777777776      899999999999999865 88999999999998643   3678


Q ss_pred             HHHHHHHHcCccEEEechHHHHHHHhc----ccCCCCCccchhhhhccCCCCCchhhhHhhhccc-----cCceeccccc
Q 010114          227 SFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGG  297 (518)
Q Consensus       227 ~~~~~i~~~~~t~l~~~P~~~~~l~~~----~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-----~~~i~~~yg~  297 (518)
                      .+++.++++++| +.++|+++..++..    ......++++||.+++|||++++++.+++.+.++     +.++++.||+
T Consensus       273 ~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~  351 (480)
T 3t5a_A          273 RWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL  351 (480)
T ss_dssp             HHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred             HHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence            999999999999 88889888887764    3345677899999999999999999999988763     4579999999


Q ss_pred             cccceeEeecCCCC------------------------CcccCCCCcccccccEEEECCC-CCCCCCCCCeeeeeee-cc
Q 010114          298 TELSSAYIQGSLLQ------------------------PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FP  351 (518)
Q Consensus       298 tE~~~~~~~~~~~~------------------------~~~~~~~g~~~~~~~~~i~~~~-g~~~~~~~~~~Gel~v-~~  351 (518)
                      ||+++.++......                        .....++|+|++ ++++|+|++ |++++.|+  +|||++ ++
T Consensus       352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~--~GEl~v~g~  428 (480)
T 3t5a_A          352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT--VGEIWVHGD  428 (480)
T ss_dssp             TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB--CEEEEEEST
T ss_pred             cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC--EEEEEEeCC
Confidence            99998766554332                        134468999999 999999965 79999999  699999 77


Q ss_pred             cccCCccccccccccceeeeCC-----CCCCCceeccccceEEEecCceEEEeec
Q 010114          352 LYLGASDRLLNADHEEVYFRGM-----PMYKGMCLRRHGDIIKRTVGGYIIVQGR  401 (518)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~TGD~~~~~~~g~l~~~gR  401 (518)
                      .++.+|  +.+++.+...|...     ...++++||+|||+|++| ||+|+|+||
T Consensus       429 ~v~~GY--~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          429 NVANGY--WQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TSCCCB--TTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             cccccc--ccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            777664  33444454444321     122367899999999997 999999998

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=1.2e-48  Score=393.05  Aligned_cols=323  Identities=19%  Similarity=0.217  Sum_probs=257.8

Q ss_pred             CCC-CCEEEEEeccCCCCCCceEEeccchhHHHhhhc---cccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEE
Q 010114          144 NPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLAL  218 (518)
Q Consensus       144 ~~~-~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~  218 (518)
                      .++ +++++++|||||||.||+|+++|.++..+....   ...+++.++|+++..+|+.|..+... ++.++..|+++++
T Consensus        82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~  161 (436)
T 3qov_A           82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP  161 (436)
T ss_dssp             SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred             CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence            345 889999999999999999999999997766544   33457899999999999987666654 7888999999988


Q ss_pred             ecCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCC--ccchhhhhccCCCCCchhhhHhhhccccCceecccc
Q 010114          219 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG  296 (518)
Q Consensus       219 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg  296 (518)
                      .+ ..++..+++.|+++++|+++++|+++..|++.....+.+  ++++|.+++|||++++++.+++.+.+ ++++++.||
T Consensus       162 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG  239 (436)
T 3qov_A          162 AA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFG  239 (436)
T ss_dssp             CC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred             CC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCc
Confidence            76 457899999999999999999999999998876545444  78999999999999999999999887 789999999


Q ss_pred             cccccee-EeecCCCCCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCC
Q 010114          297 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP  374 (518)
Q Consensus       297 ~tE~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~  374 (518)
                      +||+++. +.....    .....+.+.+++.++|+| ++|++++.|+  .|||+++.....             .     
T Consensus       240 ~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~--~Gel~v~~~~~~-------------~-----  295 (436)
T 3qov_A          240 MTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPVPEGE--IGELVLTTLDRE-------------M-----  295 (436)
T ss_dssp             EGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBCSTTC--CEEEEEEESSCC-------------S-----
T ss_pred             chhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCCCCCC--ceEEEEeccCcC-------------C-----
Confidence            9999543 222211    112356677899999999 8999999999  699999431100             0     


Q ss_pred             CCCCceeccccceEEEecCc------e---EEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCcc
Q 010114          375 MYKGMCLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE  445 (518)
Q Consensus       375 ~~~~~~~~~TGD~~~~~~~g------~---l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~  445 (518)
                        -..+||+|||+|+++++|      +   +++.||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +
T Consensus       296 --~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~  371 (436)
T 3qov_A          296 --MPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-D  371 (436)
T ss_dssp             --SCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-E
T ss_pred             --ceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-c
Confidence              123589999999999998      5   6999999999999999999999999997 9999999999999887767 8


Q ss_pred             EEEEEEEecCCCCCC----hhHHHHHHHHHHHhccCCc-cccceEEEec--CCCCCCCchhHHH
Q 010114          446 VLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPL-FKVSLVKVVP--EFPRTASNKLLRR  502 (518)
Q Consensus       446 ~~~~~v~~~~~~~~~----~~~l~~~~~~~~~~~l~~~-~~p~~i~~v~--~~P~t~~GKv~R~  502 (518)
                      .+.++|++. +...+    .+++.+.+++    .|+.+ +.|..+.+++  +||+|+ ||++|.
T Consensus       372 ~l~a~v~~~-~~~~~~~~~~~~l~~~l~~----~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~  429 (436)
T 3qov_A          372 EMIVEVELS-DLSTDNYIELEKIRRDIIR----QLKDEILVTPKVKLVKKGSLPQSE-GKAVRV  429 (436)
T ss_dssp             EEEEEEEEC-TTCCCCHHHHHHHHHHHHH----HHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred             EEEEEEEEc-CccccchhhHHHHHHHHHH----HHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence            899999998 54444    3455555554    44455 6788999998  999999 999985

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=4e-47  Score=382.78  Aligned_cols=327  Identities=18%  Similarity=0.144  Sum_probs=260.2

Q ss_pred             CCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCch-hhhhhHHHHHhhhcCcEEEEe
Q 010114          144 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLALY  219 (518)
Q Consensus       144 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~-~~~~~~~~~~~l~~G~~~~~~  219 (518)
                      .+++++++++|||||||.||+|+++|.++..+.....   ..+++.++|++++.+|+. |..++...+.++..|+++++.
T Consensus        89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~  168 (443)
T 2y4o_A           89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM  168 (443)
T ss_dssp             SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred             CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence            3568899999999999999999999999877654332   356789999999999985 666666688889999999887


Q ss_pred             cCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCC--ccchhhhhccCCCCCchhhhHhhhccccCceeccccc
Q 010114          220 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG  297 (518)
Q Consensus       220 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~  297 (518)
                      +. .++..+++.|+++++|+++++|+++..|++.....+.+  ++++|.+++|||++++++.+++.+.+ ++++++.||+
T Consensus       169 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~  246 (443)
T 2y4o_A          169 SG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL  246 (443)
T ss_dssp             CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred             CC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence            64 57899999999999999999999999998865444443  47999999999999999999998777 7889999999


Q ss_pred             ccc-ce-eEeecCCCCCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCC
Q 010114          298 TEL-SS-AYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP  374 (518)
Q Consensus       298 tE~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~  374 (518)
                      ||+ +. +...+...    ....+.+.+++.++|+| ++|++++.|+  .|||+++.....             .+    
T Consensus       247 TE~~g~~~~~~~~~~----~~g~~~~~~~~~~~i~d~~~g~~~~~G~--~Gel~v~~~t~~-------------~~----  303 (443)
T 2y4o_A          247 SEVMGPGVACECVET----KDGPVIWEDHFYPEIIDPVTGEVLPDGS--QGELVFTSLTKE-------------AM----  303 (443)
T ss_dssp             TTTTEEEEEEECTTT----CCSEEECTTTEEEEEECTTTCCBCCTTC--CEEEEEEESSCS-------------SS----
T ss_pred             hhhcCCeEEeccCCC----CCceEEccCCeEEEEEcCCCCCCCCCCC--ceEEEEeCCCcc-------------cC----
Confidence            997 43 33333221    11244567899999999 5799999999  699999431000             01    


Q ss_pred             CCCCceeccccceEEEecC-ceE-----EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEE
Q 010114          375 MYKGMCLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV  448 (518)
Q Consensus       375 ~~~~~~~~~TGD~~~~~~~-g~l-----~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~  448 (518)
                         ..+||+|||+|+++++ |++     ++.||.||+||++|++|+|.+||++|. +||+|.++++++.+++..+ +.+.
T Consensus       304 ---p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~  378 (443)
T 2y4o_A          304 ---PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD  378 (443)
T ss_dssp             ---CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred             ---hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence               2358999999999999 986     899999999999999999999999998 9999999999988776666 7888


Q ss_pred             EEEEecC--CCC---CChhHHHHHHHHHHHhccCCc-cccceEEEe--cCCCCCCCchhHHHHH
Q 010114          449 IFVVLKK--GFT---SQPDKLKMIFSKAIQSKLNPL-FKVSLVKVV--PEFPRTASNKLLRRVL  504 (518)
Q Consensus       449 ~~v~~~~--~~~---~~~~~l~~~~~~~~~~~l~~~-~~p~~i~~v--~~~P~t~~GKv~R~~l  504 (518)
                      ++|++.+  +..   .+.+++.+.    +.++|+.+ ..|..|.++  ++||+|++||++|...
T Consensus       379 a~v~~~~~~~~~~~~~~~~~l~~~----l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~  438 (443)
T 2y4o_A          379 LAVELRSEAAASVTDGERAALARE----LQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID  438 (443)
T ss_dssp             EEEEECHHHHTTCCHHHHHHHHHH----HHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred             EEEEECCcccccchhhHHHHHHHH----HHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence            9998865  221   122344444    55556655 377788888  5999999999998653

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=8.6e-47  Score=379.72  Aligned_cols=328  Identities=18%  Similarity=0.154  Sum_probs=260.6

Q ss_pred             CCCCCEEEEEeccCCCCCCceEEeccchhHHHhhhcc---ccccCCCCcEEEeecCc-hhhhhhHHHHHhhhcCcEEEEe
Q 010114          144 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY  219 (518)
Q Consensus       144 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl-~~~~~~~~~~~~l~~G~~~~~~  219 (518)
                      .+++++++++|||||||.||+|+++|.++..+.....   ..+++.++|++++.+|+ .|..++...+.++..|+++++.
T Consensus        87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  166 (437)
T 2y27_A           87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF  166 (437)
T ss_dssp             SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred             CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence            3568899999999999999999999999877654322   34678899999999998 5777766688899999999876


Q ss_pred             cCCCChhHHHHHHHHcCccEEEechHHHHHHHhcccCCCCC--ccchhhhhccCCCCCchhhhHhhhccccCceeccccc
Q 010114          220 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG  297 (518)
Q Consensus       220 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~  297 (518)
                      + ..++..+++.|+++++|+++++|+++..|++.....+.+  ++++|.+++|||++++++.+++.+.+ ++++++.||+
T Consensus       167 ~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~  244 (437)
T 2y27_A          167 G-GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL  244 (437)
T ss_dssp             C-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred             C-CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence            6 457899999999999999999999999998865444443  47999999999999999999998777 7889999999


Q ss_pred             ccc-ce-eEeecCCCCCcccCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeeecccccCCccccccccccceeeeCCC
Q 010114          298 TEL-SS-AYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP  374 (518)
Q Consensus       298 tE~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~  374 (518)
                      ||+ +. +...+.. ..   ..++.+.+++.++|+| ++|++++.|+  .|||+++....             ..+    
T Consensus       245 TE~~g~~~~~~~~~-~~---~g~~~~~~~~~~~i~d~~~g~~~~~g~--~Gel~v~~~t~-------------~~~----  301 (437)
T 2y27_A          245 SEVMGPGVASECVE-TK---DGPTIWEDHFYPEIIDPETGEVLPDGE--LGELVFTSLTK-------------EAL----  301 (437)
T ss_dssp             TTTTEEEEEECCTT-TC---SSCEECTTTEEEEEECTTTCCBCCTTC--CEEEEEEESSC-------------SSS----
T ss_pred             hhhcCCeeEEecCC-CC---CceeEccCceEEEEEcCCCCCCCCCCC--ccEEEEecCCc-------------CCc----
Confidence            998 43 3333322 11   1255677899999999 5699999999  69999943100             001    


Q ss_pred             CCCCceeccccceEEEec-CceE-----EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEE
Q 010114          375 MYKGMCLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV  448 (518)
Q Consensus       375 ~~~~~~~~~TGD~~~~~~-~g~l-----~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~  448 (518)
                         ..+||+|||+|++++ +|++     ++.||.||+|+++|++|+|.+||++|. +||+|.++++++.+++..+ +.+.
T Consensus       302 ---~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~  376 (437)
T 2y27_A          302 ---PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT  376 (437)
T ss_dssp             ---CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred             ---hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence               235899999999999 6985     899999999999999999999999997 9999999999988776666 8899


Q ss_pred             EEEEecCCCCCChhHHHHHHHHHHHhccCCc-cccceEEEe--cCCCCCCCchhHHHH
Q 010114          449 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVSLVKVV--PEFPRTASNKLLRRV  503 (518)
Q Consensus       449 ~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~p~~i~~v--~~~P~t~~GKv~R~~  503 (518)
                      ++|++.++...+. .-.+.+++.++++|+.+ ..|..|.++  ++||+|+ ||++|..
T Consensus       377 a~v~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          377 LNVEPCPETAPDT-AAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV  432 (437)
T ss_dssp             EEECBCTTTTTCH-HHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred             EEEEECCCccchh-hhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence            9998876543111 11223444455666666 477888888  5999999 9999864

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=9.5e-31  Score=256.80  Aligned_cols=237  Identities=15%  Similarity=0.078  Sum_probs=179.6

Q ss_pred             CCCCCEEEEEeccCCCCCCceEEeccchhHHHhh---hccccccCCCCcEEEeecCc-hhhhhhHHHHHhhhcCcEEEEe
Q 010114          144 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY  219 (518)
Q Consensus       144 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl-~~~~~~~~~~~~l~~G~~~~~~  219 (518)
                      .+++++++++|||||||.||+|.++|.++..+..   ......++.++|++++.+|+ .|..++...+.++..|+ +++.
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~  166 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS  166 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence            3668899999999999999999999999988877   34455678899999999999 89999888777788999 4444


Q ss_pred             cCCCChh-----------------------HHHHHHHHcCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCc
Q 010114          220 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV  276 (518)
Q Consensus       220 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~  276 (518)
                      . .+++.                       .+++.|+++++|++.++|+++..|++.......+++++|.+++|||++++
T Consensus       167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~  245 (369)
T 3hgu_A          167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL  245 (369)
T ss_dssp             C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred             c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence            3 44555                       77789999999999999999999988754344567899999999999999


Q ss_pred             hhhhHhh-hccccCceeccccccccceeEeecCCCCCcccCCCCcc------cccccEEEECC-CCCCCCCCCCeeeeee
Q 010114          277 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEVG  348 (518)
Q Consensus       277 ~~~~~~~-~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~i~~~-~g~~~~~~~~~~Gel~  348 (518)
                      ++.+++. +.++++++++.||+||+++++..+..      .++|.|      .++++++|+|+ +|++++.|+  .|||+
T Consensus       246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~--~GEl~  317 (369)
T 3hgu_A          246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGE--RGNVI  317 (369)
T ss_dssp             HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC--EEEEE
T ss_pred             HHHHHHHHHhCCCcEEEcccCchhhhcceecccc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCC--ceEEE
Confidence            9999999 88878999999999999877644332      147888      99999999997 999999999  69999


Q ss_pred             ecccccCCccccccccccceeeeCCCCCCCceeccccceEEEecC--c-------eEEEeeccCCeeeeCce
Q 010114          349 LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG--G-------YIIVQGRADDTMNLGGI  411 (518)
Q Consensus       349 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~l~~~gR~~d~i~~~G~  411 (518)
                      ++......            .+         ..|+|||++++.+.  |       .+..++|.++..++.|.
T Consensus       318 vt~l~~~~------------~l---------~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          318 VTHLSPWA------------FY---------PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEEETTE------------EE---------EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             EEEcCccc------------cc---------ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            94321110            11         13899999988643  2       34567777777777764

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.59  E-value=1.8e-15  Score=119.42  Aligned_cols=96  Identities=22%  Similarity=0.335  Sum_probs=74.4

Q ss_pred             eccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChh---HHHHHHHHHHHhcc
Q 010114          400 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKL  476 (518)
Q Consensus       400 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~---~l~~~~~~~~~~~l  476 (518)
                      +|.||+|+++|.||+|.+||++|. +||+|.++++++++++..+ +.+.++|+..++...+..   ++.+.+++.+.+.+
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~   78 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI   78 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh
Confidence            599999999999999999999997 9999999999999988888 889999998886655543   34555555555444


Q ss_pred             CCccccceEEEec--CCCCCCCchhHH
Q 010114          477 NPLFKVSLVKVVP--EFPRTASNKLLR  501 (518)
Q Consensus       477 ~~~~~p~~i~~v~--~~P~t~~GKv~R  501 (518)
                      .   .|..+.+++  +|||| +||++|
T Consensus        79 g---v~~~v~~v~~~~lPrt-sGKi~R  101 (109)
T 3lax_A           79 L---VTPRVKLVPKGALPKS-EGKAVR  101 (109)
T ss_dssp             S---SCCEEEEECTTCSCCC----CCC
T ss_pred             C---CccceEEEcCCeecCC-CCCcch
Confidence            2   344577774  89998 799987

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.87  E-value=2.3e-08  Score=100.73  Aligned_cols=144  Identities=13%  Similarity=0.057  Sum_probs=82.4

Q ss_pred             ccc---hhhhhccCCCCCchhhhHhhhccccCcee-ccccccccceeEeecCCCCCcccCCCCc-cccc-ccEEEEC--C
Q 010114          261 WTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFST-ATMT-AGLVILD--E  332 (518)
Q Consensus       261 l~~---lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~i~~--~  332 (518)
                      +|+   +..++.||  + ......++..+++.+++ ..|++||... .+..  .....++..+. .+++ .-.+.++  +
T Consensus       296 WPnl~~l~~~~~G~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~--~p~~~~~~~~~~L~~~~~ffEFip~~~  369 (581)
T 4eql_A          296 WPNTKYIETVVTGS--M-GQYVPMLNYYCNDLPLVSTTYGSSETTF-GINL--DPLCKPEDVSYTFMPNMSYFEFIPMDG  369 (581)
T ss_dssp             STTCCEEEEECSGG--G-GGGHHHHHHHHTTCCEECCEEECSSCEE-EECS--CTTSCGGGCCEEECTTSSEEEEEECST
T ss_pred             CCCCcEEEEEcCCC--h-HHHHHHHHHHcCCCccccCcccccccee-eecc--CCCCCcccCceeecCCcEEEEEEeccc
Confidence            567   44456666  2 33334455555566766 9999999532 2211  11111111121 1222 2233443  2


Q ss_pred             C--C-----CCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCceeccccceEEEec----CceEEEeec
Q 010114          333 C--G-----VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV----GGYIIVQGR  401 (518)
Q Consensus       333 ~--g-----~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~gR  401 (518)
                      .  .     ..+..|+  .+|++++..  ++            .|+          |++||++++..    ..++.|+||
T Consensus       370 ~~~~~~v~l~eVe~G~--~YelViTt~--~G------------L~R----------Yr~GD~v~v~~f~~~~p~i~f~gR  423 (581)
T 4eql_A          370 GDKNDVVDLEDVKLGC--TYEPVVTNF--AG------------LYR----------MRVGDIVLVTGFYNNAPQFKFVRR  423 (581)
T ss_dssp             TCCSSCEEGGGCCTTC--EEEEEEECS--SS------------CCS----------EECCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCCcEeCHHHcCCCc--eEEEEEeec--cc------------eee----------EEcCCEEEEcccCCCCcEEEEEEe
Confidence            1  1     1244565  588877322  11            233          89999999986    468999999


Q ss_pred             cCCeeeeCceecchhHHHHHHhhcC-----c--ccceeeEEE
Q 010114          402 ADDTMNLGGIKTSSVEIERVCDQAD-----E--SILETAAIS  436 (518)
Q Consensus       402 ~~d~i~~~G~~v~~~~iE~~l~~~~-----~--~v~~~~vv~  436 (518)
                      .++++.+.|++++..+||+++.+..     .  .|.|..+..
T Consensus       424 ~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~  465 (581)
T 4eql_A          424 ENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYA  465 (581)
T ss_dssp             TTEEECSSSCCEEHHHHHHHHHHC--------------CEEE
T ss_pred             cCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEec
Confidence            9999999999999999999997433     1  256666654

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.85  E-value=3e-08  Score=99.56  Aligned_cols=163  Identities=13%  Similarity=0.041  Sum_probs=92.4

Q ss_pred             chHHHHHHHhcccCC-------CCCccchhhh--hccCCCCCchhhhHhhhccccCcee-ccccccccceeEeecCCCCC
Q 010114          243 VPSLVKAWRNTNCLE-------GLDWTKIRSF--ASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQP  312 (518)
Q Consensus       243 ~P~~~~~l~~~~~~~-------~~~l~~lr~i--~~~Ge~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~  312 (518)
                      .|..++.+.+.....       ..-+|++|++  +.+|..  ......++..+++.+++ ..|++||... .+..  .+.
T Consensus       276 ~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~--~p~  350 (581)
T 4epl_A          276 NPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANV--TPR  350 (581)
T ss_dssp             CHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEE-EECC--CTT
T ss_pred             CHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceee-eeec--CCC
Confidence            455566665443222       1126677643  444532  22334455444566766 9999999533 2222  121


Q ss_pred             cccCCCCc-cccc-ccEEEE--CCCC---------CCCCCCCCeeeeeeecccccCCccccccccccceeeeCCCCCCCc
Q 010114          313 QAFGAFST-ATMT-AGLVIL--DECG---------VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM  379 (518)
Q Consensus       313 ~~~~~~g~-~~~~-~~~~i~--~~~g---------~~~~~~~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (518)
                      ..++..+. .+|+ .-++.+  ++.+         ..++.|+  .+|++++..  ++            .|+        
T Consensus       351 ~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~--~YelviTt~--~G------------L~R--------  406 (581)
T 4epl_A          351 LSPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGE--EYEVVITNY--AG------------LYR--------  406 (581)
T ss_dssp             SCTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTC--EEEEEEEST--TS------------CSS--------
T ss_pred             CCccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCC--eEEEEEeec--cc------------eee--------
Confidence            11111111 1222 122233  3221         2455666  588887322  11            233        


Q ss_pred             eeccccceEEEecC----ceEEEeeccCCeeeeCceecchhHHHHHHhhcC-------cccceeeEEE
Q 010114          380 CLRRHGDIIKRTVG----GYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-------ESILETAAIS  436 (518)
Q Consensus       380 ~~~~TGD~~~~~~~----g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~-------~~v~~~~vv~  436 (518)
                        |++||++++..-    ..+.|+||.++++++.|+++++.+||+++.+..       -.|.|..+..
T Consensus       407 --Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~  472 (581)
T 4epl_A          407 --YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYI  472 (581)
T ss_dssp             --EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred             --EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEec
Confidence              899999999752    578999999999999999999999999997322       2366776665

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.85  E-value=5e-08  Score=98.38  Aligned_cols=55  Identities=24%  Similarity=0.331  Sum_probs=45.4

Q ss_pred             ccccceEEEec----CceEEEeeccCCeeeeCceecchhHHHHHHhhcC-----c--ccceeeEEE
Q 010114          382 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-----E--SILETAAIS  436 (518)
Q Consensus       382 ~~TGD~~~~~~----~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~-----~--~v~~~~vv~  436 (518)
                      |++||+++++.    ...+.|+||.++++++.|+++++.+||+++.+..     .  .|.+..+..
T Consensus       412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~  477 (609)
T 4b2g_A          412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA  477 (609)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred             eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec
Confidence            89999999974    4689999999999999999999999999997322     2  356666654

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=87.32  E-value=2.8  Score=40.81  Aligned_cols=79  Identities=13%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCC--CHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            2 TYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         2 Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~--~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      |.+.+...+..+++.+... +.++|++...++.  ....+...++++..|+..++++.. +.+.+...+++.++.+++..
T Consensus       111 t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~  189 (437)
T 2y27_A          111 TAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDIIMVT  189 (437)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEEEEC
Confidence            5667777776677766667 8999999998885  344455678888999998877654 67888999999999999988


Q ss_pred             hhh
Q 010114           79 DFI   81 (518)
Q Consensus        79 ~~~   81 (518)
                      +..
T Consensus       190 Ps~  192 (437)
T 2y27_A          190 PSY  192 (437)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=86.45  E-value=3.1  Score=40.55  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCC--HHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            2 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         2 Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~--~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      |.+.+...+..+++.+... +.++|++...++-+  ...+...++++..|+..++++.. ..+.+...+++.++.+++..
T Consensus       113 t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~  191 (443)
T 2y4o_A          113 TARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIILVT  191 (443)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEEEC
Confidence            6677777777777767667 89999999988853  44455678888899998887654 77888899999999999988


Q ss_pred             hhh
Q 010114           79 DFI   81 (518)
Q Consensus        79 ~~~   81 (518)
                      +..
T Consensus       192 Ps~  194 (443)
T 2y4o_A          192 PSY  194 (443)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=85.98  E-value=3.1  Score=40.52  Aligned_cols=80  Identities=14%  Similarity=0.062  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCC--CHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            2 TYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         2 Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~--~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      |.+.+...+..+++.+... +.++|++...++-  ....+..+++++..|+..++.+.. .+..+...+++.++.+++..
T Consensus       107 th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~~~~  185 (436)
T 3qov_A          107 SQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTALHAI  185 (436)
T ss_dssp             EHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEEEEC
Confidence            5677777777777777777 9999999999874  345555678888999998877554 66888999999999999988


Q ss_pred             hhhh
Q 010114           79 DFIL   82 (518)
Q Consensus        79 ~~~~   82 (518)
                      +...
T Consensus       186 P~~~  189 (436)
T 3qov_A          186 PSYA  189 (436)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	518
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-70
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	7e-61
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-50
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-48
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-44
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	3e-41
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	9e-37

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  234 bits (599), Expect = 2e-70
 Identities = 129/533 (24%), Positives = 217/533 (40%), Gaps = 36/533 (6%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           ++Y+EL   V   AN L  +   KGD +AI MPM   A +  LA    G V   I   F+
Sbjct: 104 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 163

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
              +A  +  S ++ + T D  +R GR  PL   V  A  LK   + ++ + + +     
Sbjct: 164 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGS 221

Query: 120 DLSW---KDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT 176
           D+ W   +D             + P     +  + IL++SG+TG+PK +  T    +   
Sbjct: 222 DIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYA 281

Query: 177 AEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERS---FGKF 231
           A  + ++ D   GD+Y    ++GWV G   +L+     GAT  +++G P   +     + 
Sbjct: 282 ATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV 341

Query: 232 VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFASTGETSNVDDDLWLSSK--AW 287
           V    V +L T P+ ++A        +EG D + +R   S GE  N +   W   K    
Sbjct: 342 VDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKE 401

Query: 288 YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQP--- 342
              ++++   TE +  ++   L       A S      G    ++D  G P         
Sbjct: 402 KCPVVDTWWQTE-TGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNL 460

Query: 343 CVGE--VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG 400
            + +   G      G  +R      E+ YF              GD  +R   GY  + G
Sbjct: 461 VITDSWPGQARTLFGDHERF-----EQTYFSTFKNM-----YFSGDGARRDEDGYYWITG 510

Query: 401 RADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ 460
           R DD +N+ G +  + EIE     A   I E A + +  A  G + +  +V L  G    
Sbjct: 511 RVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPS 568

Query: 461 PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 513
           P+    +    ++ ++ PL    ++      P+T S K++RR+LR     + S
Sbjct: 569 PELYAEV-RNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTS 620

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  209 bits (532), Expect = 7e-61
 Identities = 116/530 (21%), Positives = 209/530 (39%), Gaps = 24/530 (4%)

Query: 1   MTYKELREQVMLVANALDTMF--SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 58
           +TYKEL E+V  VA  L       KGD +A+ MPM   A+I  LAI   G +   +   F
Sbjct: 91  ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 150

Query: 59  AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 118
           ++  +  R+    +K + T D   RGG+       V  A      V   +          
Sbjct: 151 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 210

Query: 119 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 178
              + +D   + +      YY       +  + +L++SG+TG PK +  +    +     
Sbjct: 211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 270

Query: 179 GWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKF---VQ 233
              +  D    DV+    ++GW+ G   +++   L G    +++G+P   ++ ++   + 
Sbjct: 271 TMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIID 330

Query: 234 DAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFASTGETSNVDDDLWLSSK--AWYN 289
           +  VT     P+ ++  +      +E      +R   S GE    +   W S K      
Sbjct: 331 EHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEI 390

Query: 290 AIIESCGGTELSSAYIQ--GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV 347
            I+++   TE  S  +      + P   G+ S        V+LD       +     G +
Sbjct: 391 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVL 450

Query: 348 GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN 407
            +   +   +  +   +H+      +  Y G      GD   +   GYI + GR DD +N
Sbjct: 451 AVKAAWPSFARTIWK-NHDRYLDTYLNPYPGYY--FTGDGAAKDKDGYIWILGRVDDVVN 507

Query: 408 LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP------ 461
           + G + S+ EIE      D  + E A +  +    G + +  FVVLK   +         
Sbjct: 508 VSGHRLSTAEIEAAI-IEDPIVAECAVVGFNDDLTG-QAVAAFVVLKNKSSWSTATDDEL 565

Query: 462 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 511
             +K      ++  + P     L+ +V + P+T S K++RR+LR  +  E
Sbjct: 566 QDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 615

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  178 bits (451), Expect = 3e-50
 Identities = 104/530 (19%), Positives = 176/530 (33%), Gaps = 57/530 (10%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            TY E+ ++   +   L  +    GD +A       R +  Y A+   G V+ +     +
Sbjct: 41  TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLS 100

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            +EIA  L  ++ K +     +L                 ++AI          + + E+
Sbjct: 101 PKEIAYILNHAEDKVLLFDPNLL---------------PLVEAIRGELKTVQHFVVMDEK 145

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA--IPWTQLSSIRCTA 177
                                PV  P  A   + +++GTTG PK        L      A
Sbjct: 146 APEGYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAA 201

Query: 178 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 237
                  L   DV      +  V    + +++ L GA   L        S  +     GV
Sbjct: 202 SLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGV 261

Query: 238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 297
           T    VP++  A  +     G     +R     G  +          +     + +  G 
Sbjct: 262 TFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF--ERMGVEVRQGYGL 319

Query: 298 TELSSAYIQ---GSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQPCVGEV 347
           TE S   +Q    S L+  +     T     G       L + DE G P P D   +GEV
Sbjct: 320 TETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEV 379

Query: 348 -----GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA 402
                 +   Y G  +   +A   + +F            R GDI      GY+ ++ R 
Sbjct: 380 QLKGPWITGGYYGNEEATRSALTPDGFF------------RTGDIAVWDEEGYVEIKDRL 427

Query: 403 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD 462
            D +  GG   SSV++E         + E A +++       E  +  VV +    +  +
Sbjct: 428 KDLIKSGGEWISSVDLENAL-MGHPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPTPEE 485

Query: 463 KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512
               +    +++               E PRT++ K L+R LR+Q K+  
Sbjct: 486 ----LNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYY 531

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  173 bits (439), Expect = 2e-48
 Identities = 84/517 (16%), Positives = 169/517 (32%), Gaps = 37/517 (7%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY E  E  + +A A+     +    I +    +++  +  L  +  G  V    D + 
Sbjct: 48  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 107

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
            RE+   + +S+   +F     L+          ++     K I++ +  +  G      
Sbjct: 108 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQ----KIIIMDSKTDYQGFQSMYT 163

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 176
            ++        +Y   P      ++    +  I+ SSG+TG PK +              
Sbjct: 164 FVTSHLPPGFNEYDFVP----ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHA 219

Query: 177 AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAG 236
            +      +                G        + G  + L      E  F + +QD  
Sbjct: 220 RDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL-FLRSLQDYK 278

Query: 237 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 296
           +     VP+L   +  +  ++  D + +   AS G   + +    ++ +     I +  G
Sbjct: 279 IQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYG 338

Query: 297 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQP---CVGEVGLFPL 352
            TE +SA +  +       GA           ++D + G     +Q    CV    +   
Sbjct: 339 LTETTSAIL-ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 397

Query: 353 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 412
           Y+       N +                    GDI       +  +  R    +   G +
Sbjct: 398 YVN------NPEATNALIDKDGWL------HSGDIAYWDEDEHFFIVDRLKSLIKYKGYQ 445

Query: 413 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 472
            +  E+E +  Q    I +     +     G E+    VVL+ G T    ++       +
Sbjct: 446 VAPAELESILLQHPN-IFDAGVAGLPDDDAG-ELPAAVVVLEHGKTMTEKEIV----DYV 499

Query: 473 QSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQI 508
            S++    K+   V  V E P+  + KL  R +R+ +
Sbjct: 500 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 536

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  162 bits (411), Expect = 1e-44
 Identities = 86/513 (16%), Positives = 168/513 (32%), Gaps = 59/513 (11%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +TY EL  +   +A         K   + I M  ++   I  LA++ AG   V I   + 
Sbjct: 49  LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYP 108

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
              I   L  S+A+ + TQ  ++                     ++  I  +  + + E+
Sbjct: 109 KERIQYILDDSQARMLLTQKHLVH--------------------LIHNIQFNGQVEIFEE 148

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
           D              R      V +    +  ++++SGTTG PK                
Sbjct: 149 D----------TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFF 198

Query: 180 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE--RSFGKFVQDAGV 237
              +++   D      ++ +      +F + L GA+L +     +     F +++    +
Sbjct: 199 ENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEI 258

Query: 238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 297
           TV+               L+      I++  + G  ++         K  Y         
Sbjct: 259 TVITLP------PTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTET 312

Query: 298 TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQP---CVGEVGLFPLYL 354
           T  ++ ++                     + I+DE        +    C+G  GL   Y 
Sbjct: 313 TICATTWVATK-ETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYW 371

Query: 355 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 414
                    +     F   P   G  L + GD  +    G I   GR D+ + + G +  
Sbjct: 372 K------RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVE 425

Query: 415 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 474
             E+E +  +    I ETA             L  + V +K      ++L+    +    
Sbjct: 426 LEEVESILLKHMY-ISETAVSVHKDHQEQ-PYLCAYFVSEKHIP--LEQLR----QFSSE 477

Query: 475 KLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRD 506
           +L P + + S    + + P T++ K+ R+ L +
Sbjct: 478 EL-PTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  153 bits (387), Expect = 3e-41
 Identities = 91/516 (17%), Positives = 167/516 (32%), Gaps = 37/516 (7%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
            +Y+EL  +   +A     +   + D + + +P       +  A+   G + V    S  
Sbjct: 51  WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           + EI      ++A      D                  A      LP + N +     E+
Sbjct: 111 SSEITYFCEFAEAAAYIIPDAYSG--------FDYRSLARQVQSKLPTLKNIIVAGEAEE 162

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 179
            L  +D  +     P        +        +  S G+TG  K IP T    I      
Sbjct: 163 FLPLEDLHTEPVKLPEVKSSDVAF--------LQLSGGSTGLSKLIPRTHDDYIYSLKRS 214

Query: 180 WAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 238
                L    VY     +              L      +   SP        ++   VT
Sbjct: 215 VEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVT 274

Query: 239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 298
           +   VP L   W +       D + ++     G   + +    + +  +   + +  G  
Sbjct: 275 ITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAV-FGCTLQQVFGMA 333

Query: 299 ELSSAYIQGSLLQPQAFGAFSTA-TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGAS 357
           E    Y +    +           +      + D+            GE G   L     
Sbjct: 334 EGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKP-----GETGH--LLTRGP 386

Query: 358 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 417
             +      E +        G    R GDI++ T  GYI+V+GRA D +N GG K ++ E
Sbjct: 387 YTIRGYYKAEEHNAASFTEDGFY--RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE 444

Query: 418 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN 477
           +E     A  ++ + A +S+     G E   +F++ +       +         ++ +  
Sbjct: 445 VENHL-LAHPAVHDAAMVSMPDQFLG-ERSCVFIIPRDEAPKAAE-----LKAFLRERGL 497

Query: 478 PLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHEL 512
             +K+   V+ V  FP+T   K+ ++ LR+ I  +L
Sbjct: 498 AAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  140 bits (352), Expect = 9e-37
 Identities = 93/514 (18%), Positives = 151/514 (29%), Gaps = 47/514 (9%)

Query: 1   MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 59
           +T+ ELR +V  VA  L          +A+  P +   VI  LA+   G V   +     
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89

Query: 60  AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 119
           + E+A  ++  +                              A  +   G+   I     
Sbjct: 90  SAELAELIKRGEMTAAVIAV------------------GRQVADAIFQSGSGARIIFLGD 131

Query: 120 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI--PWTQLSSIRCTA 177
            +   +  S       P               I ++SGTTG PKA   P     S     
Sbjct: 132 LVRDGEPYSYGPPIEDPQR------EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185

Query: 178 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 237
                +     +V      L  V+G   +  + L      +           + VQ   V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245

Query: 238 TVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 295
           T L   P+ + A        G  L    +R     G T  + D +  +          + 
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT--MPDAVLETVHQHLPGEKVNI 303

Query: 296 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLG 355
            GT  +   +     +     A    +    + I         + +     V        
Sbjct: 304 YGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFV 363

Query: 356 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 415
                  A  E    +              +       G + + GR DD +  GG     
Sbjct: 364 GYLNQPQATAE--KLQDGWYRTSDVAVWTPE-------GTVRILGRVDDMIISGGENIHP 414

Query: 416 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 475
            EIERV   A   + E   I ++    G + +   VV + G T   D L        +S 
Sbjct: 415 SEIERVLGTAPG-VTEVVVIGLADQRWG-QSVTACVVPRLGETLSADALD----TFCRSS 468

Query: 476 LNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQI 508
               FK      ++ + P+ A NK+LRR L  Q+
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	518
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	86.67
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	84.27
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	80.28

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=7.9e-76  Score=614.15  Aligned_cols=497  Identities=26%  Similarity=0.381  Sum_probs=395.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++|+++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++
T Consensus       104 ~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~  183 (643)
T d1pg4a_         104 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD  183 (643)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhccCCCCcchhhh---hcc---CCCce-eeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEE
Q 010114           80 FILRGGRKFPLYSKV---LGA---APLKA-IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI  152 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~---~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  152 (518)
                      ...............   +..   ..... +++...+...... ......+.+......     ....+...+++++++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~dd~a~I  257 (643)
T d1pg4a_         184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLIEKAS-----PEHQPEAMNAEDPLFI  257 (643)
T ss_dssp             EEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCC-BTTEEEHHHHHTTSC-----SCCCCCCEETTSEEEE
T ss_pred             hhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccc-cccchhhhhhhcccC-----cccCCCCCCCCCeEEE
Confidence            544332222222211   111   11111 1221111111111 111223333333222     1233344567999999


Q ss_pred             EeccCCCCCCceEEeccchhHHHhhh-ccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhH
Q 010114          153 LFSSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERS  227 (518)
Q Consensus       153 ~~TSGtTG~pK~v~~s~~~~~~~~~~-~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~  227 (518)
                      +|||||||.||||+++|.+++.+... ....++++++|++++.+|++|++|+.. ++++|++|+++++++..   .++..
T Consensus       258 lyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~  337 (643)
T d1pg4a_         258 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR  337 (643)
T ss_dssp             EEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTH
T ss_pred             EeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHH
Confidence            99999999999999999997665443 334568899999999999999999876 78899999999998643   36789


Q ss_pred             HHHHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccc--cCceecccccccccee
Q 010114          228 FGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELSSA  303 (518)
Q Consensus       228 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~  303 (518)
                      +++.++++++|+++++|++++.|++...  ....++++||.++++|+++++++.+++.+.++  ++++++.||+||+|+.
T Consensus       338 ~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~  417 (643)
T d1pg4a_         338 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGF  417 (643)
T ss_dssp             HHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSC
T ss_pred             HHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccce
Confidence            9999999999999999999999987754  34667999999999999999999999988874  4679999999999876


Q ss_pred             EeecCC-CCCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeeecccccCCccccccc-cccceeeeCCCCCCCcee
Q 010114          304 YIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA-DHEEVYFRGMPMYKGMCL  381 (518)
Q Consensus       304 ~~~~~~-~~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  381 (518)
                      ++.... ....+.+++|.|++|++++|+|++|++++.|+  .|||+++....+....|.+. +.+...    .....++|
T Consensus       418 ~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~--~Gel~v~~~~p~~~~~~~~~~~~~~~~----~~~~~~g~  491 (643)
T d1pg4a_         418 MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT--EGNLVITDSWPGQARTLFGDHERFEQT----YFSTFKNM  491 (643)
T ss_dssp             SBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCEETTCHHHHHHH----HHSSSTTS
T ss_pred             EEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCc--eEEEEEecCCCcccccccCChhhchhh----hcccCCCe
Confidence            554333 33456789999999999999999999999998  69999943222222112221 111111    11245679


Q ss_pred             ccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCCh
Q 010114          382 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP  461 (518)
Q Consensus       382 ~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~  461 (518)
                      |+|||+|++|+||+|+++||.||+||++|++|+|.|||++|. +||+|.+++|++.+++..| +.+++||+++++...+ 
T Consensus       492 ~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~-~~p~V~eaaVvg~~d~~~g-e~~~a~Vv~~~~~~~~-  568 (643)
T d1pg4a_         492 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPS-  568 (643)
T ss_dssp             EEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCC-
T ss_pred             EEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEECCCCC-eEEEEEEEECCCCCCC-
Confidence            999999999999999999999999999999999999999998 9999999999999998888 8999999999876655 


Q ss_pred             hHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          462 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       462 ~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      +++.+.++++++++|++|++|+.|+++++||+|++||++|+.|++++..+.
T Consensus       569 ~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~  619 (643)
T d1pg4a_         569 PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT  619 (643)
T ss_dssp             HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCCc
Confidence            466677888899999999999999999999999999999999999997653

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-73  Score=595.41  Aligned_cols=499  Identities=24%  Similarity=0.334  Sum_probs=384.7

Q ss_pred             CCHHHHHHHHHHHHHHHh-hc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEec
Q 010114            1 MTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ   78 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~-~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~   78 (518)
                      +||+||.++++++|++|+ +. +++||+|+++++|++++++++|||+++|++++|+++.++++++.++++.+++++++++
T Consensus        91 ~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~  170 (640)
T d1ry2a_          91 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT  170 (640)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEE
T ss_pred             EeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccc
Confidence            599999999999999997 66 9999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccCCCCcchhhhh---ccCCCceee--ccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEE
Q 010114           79 DFILRGGRKFPLYSKVL---GAAPLKAIV--LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL  153 (518)
Q Consensus        79 ~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  153 (518)
                      ...............+.   .........  ...........................     .........++++++|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~a~i~  245 (640)
T d1ry2a_         171 DESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYK-----TYYPCTPVDSEDPLFLL  245 (640)
T ss_dssp             SBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSC-----SCCCCCCEETTSCCEEE
T ss_pred             hhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccccccccccccc-----cccccCCcccccCCEEE
Confidence            76544333333222221   111111111  111111110011111111222212111     12233345568999999


Q ss_pred             eccCCCCCCceEEeccchhHHHhhhccc-cccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCC---CChhHH
Q 010114          154 FSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSF  228 (518)
Q Consensus       154 ~TSGtTG~pK~v~~s~~~~~~~~~~~~~-~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~  228 (518)
                      |||||||.||||+++|.+++.+...... .+.+.++|++++.+|++|++|+.. +++++..|+++++.+..   .++..+
T Consensus       246 ~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~  325 (640)
T d1ry2a_         246 YTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRY  325 (640)
T ss_dssp             EECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHH
T ss_pred             ECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHH
Confidence            9999999999999999998776554443 467899999999999999999876 88899999999988653   256899


Q ss_pred             HHHHHHcCccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhcccc--CceeccccccccceeE
Q 010114          229 GKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NAIIESCGGTELSSAY  304 (518)
Q Consensus       229 ~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~--~~i~~~yg~tE~~~~~  304 (518)
                      ++.++++++|.+.++|++++.|.+...  ....++++||.++++|+++++++.+++.+.++.  ..+++.||+||++...
T Consensus       326 ~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~  405 (640)
T d1ry2a_         326 WDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL  405 (640)
T ss_dssp             HHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCS
T ss_pred             HHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccccccccc
Confidence            999999999999999999999987653  345679999999999999999999999988753  4589999999998765


Q ss_pred             eecCCC--CCcccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-c--ccccCCccccccccccceeeeCCCCCCCc
Q 010114          305 IQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLLNADHEEVYFRGMPMYKGM  379 (518)
Q Consensus       305 ~~~~~~--~~~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (518)
                      ......  ...+.+++|.|+++++++|+|+++.....+....||+++ +  ++++.+|  +.+++.+...+.    .+.+
T Consensus       406 ~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy--~~~~e~t~~~~~----~~~~  479 (640)
T d1ry2a_         406 VTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTI--WKNHDRYLDTYL----NPYP  479 (640)
T ss_dssp             EECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEE--TTCHHHHHHHHT----SSST
T ss_pred             ccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCccccc--ccCHHHHHhhhc----cCCC
Confidence            443332  345678999999999999999765443333223699999 4  3444432  223222222221    2456


Q ss_pred             eeccccceEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCC
Q 010114          380 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS  459 (518)
Q Consensus       380 ~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~  459 (518)
                      |||+|||+|++|+||+|+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.+++||+++++...
T Consensus       480 gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~d~~~g-e~~~a~Vv~~~~~~~  557 (640)
T d1ry2a_         480 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-QAVAAFVVLKNKSSW  557 (640)
T ss_dssp             TSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-CCCEEEEEEC-----
T ss_pred             CeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-eEEEEEEEEcCCCCc
Confidence            79999999999999999999999999999999999999999997 9999999999999999888 899999999886433


Q ss_pred             C------hhHHHHHHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          460 Q------PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       460 ~------~~~l~~~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      +      .+++.+.+.+.++++|++|++|+.|+++++||+|++|||+|++||+++.++.
T Consensus       558 ~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~  616 (640)
T d1ry2a_         558 STATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGES  616 (640)
T ss_dssp             -------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC---
T ss_pred             cccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCCc
Confidence            2      2467888888899999999999999999999999999999999999987654

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1e-69  Score=560.91  Aligned_cols=484  Identities=17%  Similarity=0.188  Sum_probs=376.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.+++.++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++
T Consensus        48 lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  127 (541)
T d1lcia_          48 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSK  127 (541)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECG
T ss_pred             eeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeec
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCC--CCCCCCCCCCCCCCCEEEEEeccC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH--PRPNYYSPVYNPVDAVVNILFSSG  157 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~TSG  157 (518)
                      ...      +.+..+....+....++.......    ......+.+........  ......+.....++++++++||||
T Consensus       128 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  197 (541)
T d1lcia_         128 KGL------QKILNVQKKLPIIQKIIIMDSKTD----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSG  197 (541)
T ss_dssp             GGH------HHHHHHHHHCTTCCEEEETTCSSC----BTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC--
T ss_pred             ccc------ccchhccccccccceeeeecCCcc----ccccchhhhhhhhhccccccccccCccccCCCCceEEEEeecc
Confidence            543      333444444433333322111111    01111222222211110  011222233345689999999999


Q ss_pred             CCCCCceEEeccchhHHHhhhccc---cccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHH
Q 010114          158 TTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD  234 (518)
Q Consensus       158 tTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~  234 (518)
                      |||.||+|+++|.+++........   ...+.+.+++++.+|++|.+++...+..+..|+..+... ..........+..
T Consensus       198 TTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  276 (541)
T d1lcia_         198 STGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQD  276 (541)
T ss_dssp             ---CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccccccccccccccc-ccccchhHHHHhh
Confidence            999999999999998776554433   345778999999999999999988878888888877665 5667888999999


Q ss_pred             cCccEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcc
Q 010114          235 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA  314 (518)
Q Consensus       235 ~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~  314 (518)
                      +++|.+..+|.++..+++.......+++++|.+++||+++++...+++.+.++...+++.||+||+++.++.... ....
T Consensus       277 ~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~  355 (541)
T d1lcia_         277 YKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDK  355 (541)
T ss_dssp             TTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCC-C---
T ss_pred             hhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCc-ccCC
Confidence            999999999999999999888888889999999999999999999999988876779999999999887665544 3456


Q ss_pred             cCCCCcccccccEEEEC-CCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEec
Q 010114          315 FGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV  392 (518)
Q Consensus       315 ~~~~g~~~~~~~~~i~~-~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  392 (518)
                      .+++|+|+++++++|+| ++|.+++.|+  .|||++ ++..+.+|.  .+...+...      ..+++||+|||+|++|+
T Consensus       356 ~~svG~p~~~~~~~i~d~d~~~~~~~g~--~Gel~v~g~~~~~gY~--~~~~~~~~~------~~~~~~~~TGDl~~~~~  425 (541)
T d1lcia_         356 PGAVGKVVPFFEAKVVDLDTGKTLGVNQ--RGELCVRGPMIMSGYV--NNPEATNAL------IDKDGWLHSGDIAYWDE  425 (541)
T ss_dssp             CCCCBEECTTCEEEEECTTTCCBCCTTC--CEEEEEESTTSCSEET--TBHHHHHHH------BCTTSCEEEEEEEEECT
T ss_pred             CCccccccCCCEEEEEECCCCcCCCCCC--eEEEEEccCccCCeeC--CChhhhhhc------ccCCccccCCCeeEEcC
Confidence            78999999999999999 6799999999  699999 666666532  122211111      24568999999999999


Q ss_pred             CceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHH
Q 010114          393 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI  472 (518)
Q Consensus       393 ~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~  472 (518)
                      +|++++.||.+|+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+++++...+.+++.+.    +
T Consensus       426 ~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~~~g-~~~~a~v~~~~~~~~~~~~l~~~----~  499 (541)
T d1lcia_         426 DEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDDDAG-ELPAAVVVLEHGKTMTEKEIVDY----V  499 (541)
T ss_dssp             TCCEEEC-----CEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH----H
T ss_pred             CeEEEEeeeecCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-EEEEEEEEECCCCCCCHHHHHHH----H
Confidence            9999999999999999999999999999997 9999999999999988888 89999999998877777777666    5


Q ss_pred             HhccCCcc-ccceEEEecCCCCCCCchhHHHHHHHHHhccc
Q 010114          473 QSKLNPLF-KVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  512 (518)
Q Consensus       473 ~~~l~~~~-~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~  512 (518)
                      +++|+++. .|..|+++++||||++|||+|++|++++.++.
T Consensus       500 ~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  540 (541)
T d1lcia_         500 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK  540 (541)
T ss_dssp             HHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHHT
T ss_pred             HHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHhC
Confidence            56677765 68999999999999999999999999998764

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-69  Score=558.48  Aligned_cols=478  Identities=21%  Similarity=0.217  Sum_probs=356.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++.++++.
T Consensus        41 ~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~  120 (534)
T d1v25a_          41 TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDP  120 (534)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECG
T ss_pred             EcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccc
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...      .....+..........+........     ........ .       ..........++++++++||||||
T Consensus       121 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~-------~~~~~~~~~~~~~~a~i~~TSGTT  181 (534)
T d1v25a_         121 NLL------PLVEAIRGELKTVQHFVVMDEKAPE-----GYLAYEEA-L-------GEEADPVRVPERAACGMAYTTGTT  181 (534)
T ss_dssp             GGH------HHHHHHGGGCSSCCEEEESSSCCCT-----TCEEHHHH-C-------CSCCCCCCCCTTSEEEEEEECSSS
T ss_pred             hhh------hhHHHHhhcccccceeEEeeccccc-----cccccccc-c-------cccccccccccCCcEEEEEecCCC
Confidence            543      2333333333333222221111110     01111111 0       011222334568999999999999


Q ss_pred             CCCceEEeccchhHHHhh--hccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTA--EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~--~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  237 (518)
                      |.||+|+++|.+++.+..  .....+.....+++++.+|++|.+++...+..+..|+++++.++..++..+...++++++
T Consensus       182 G~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~v  261 (534)
T d1v25a_         182 GLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGV  261 (534)
T ss_dssp             SSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTC
T ss_pred             CCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeeccccccccccchhhhhccc
Confidence            999999999999976543  333445678899999999999999998888888899999998888889999999999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCC-----
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP-----  312 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~-----  312 (518)
                      |.+.++|.++..+++.......++++||.+++||+++++++.+++...  +.++++.||+||++..+........     
T Consensus       262 t~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~  339 (534)
T d1v25a_         262 TFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLS  339 (534)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSC
T ss_pred             cccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccC
Confidence            999999999999998877777889999999999999999999988754  5789999999999988765543321     


Q ss_pred             -----cccCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccc
Q 010114          313 -----QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGD  386 (518)
Q Consensus       313 -----~~~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD  386 (518)
                           ...+++|.|++|++++|+|++|++++.+..++|||++ ++.++.+|+  .+++.+...+      ..++||+|||
T Consensus       340 ~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~--~~~~~t~~~~------~~dg~~~TGD  411 (534)
T d1v25a_         340 EEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY--GNEEATRSAL------TPDGFFRTGD  411 (534)
T ss_dssp             HHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCB--TCHHHHHTTB------CTTSCEEEEE
T ss_pred             ccccccccccceeccCCcEEEEECCCCCCCCCCCCeeEEEEEcCCcccceec--CChhhhhhhc------ccCCCCccCc
Confidence                 2347899999999999999999999886545799999 777776643  2332222222      4567999999


Q ss_pred             eEEEecCceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHH
Q 010114          387 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM  466 (518)
Q Consensus       387 ~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~  466 (518)
                      +|++++||++++.||.+|+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|+++++... .+++.+
T Consensus       412 lg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~V~~a~v~~~~~~~~~-~~l~a~vv~~~~~~~-~~~~~~  488 (534)
T d1v25a_         412 IAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPT-PEELNE  488 (534)
T ss_dssp             EEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CEEEEECSSSS-EEEEECC---------------
T ss_pred             eeEECCCccEEEecccccEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEECCCCC-eEEEEEEEeCCCCCC-HHHHHH
Confidence            9999999999999999999999999999999999997 9999999999999998888 899999988764332 233333


Q ss_pred             HHHHHHHhccCCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          467 IFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       467 ~~~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      .   .++++|++|++|..|+++++||+|++|||+|++||++|++...
T Consensus       489 ~---~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~~~  532 (534)
T d1v25a_         489 H---LLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG  532 (534)
T ss_dssp             --------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred             H---HHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhhhC
Confidence            2   2567899999999999999999999999999999999987654

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=1.9e-64  Score=518.05  Aligned_cols=455  Identities=18%  Similarity=0.166  Sum_probs=371.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|+++|++++|||+++|++++|+++.++++++.++++.++++++|++.
T Consensus        49 ~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~  128 (514)
T d1amua_          49 LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQK  128 (514)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECG
T ss_pred             EcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEeh
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...+         .+.............                 ......    ........+..++++++++||||||
T Consensus       129 ~~~~---------~~~~~~~~~~~~~~~-----------------~~~~~~----~~~~~~~~p~~~~d~a~i~~TSGTT  178 (514)
T d1amua_         129 HLVH---------LIHNIQFNGQVEIFE-----------------EDTIKI----REGTNLHVPSKSTDLAYVIYTSGTT  178 (514)
T ss_dssp             GGHH---------HHTTSCCCSEEEECC-----------------CSTTTT----SCCSCCCCCCCTTSEEEEEEEC---
T ss_pred             hhhh---------hhhhhcccccccccc-----------------cccccc----cccccCCCCCCcccceEEEEccCCC
Confidence            5431         111111111111100                 000000    1111122234568999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCC--CChhHHHHHHHHcCc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGV  237 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~  237 (518)
                      |.||+|.++|.++..........+.....+++++..|+.|..++..++.++..|+++++.+..  .+....++.+..+.+
T Consensus       179 G~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (514)
T d1amua_         179 GNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEI  258 (514)
T ss_dssp             --CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTC
T ss_pred             CCcccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccchhhhhhhhhhhhc
Confidence            999999999999999998888888999999999999999999999888999999999887642  345677889999999


Q ss_pred             cEEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCC--CCccc
Q 010114          238 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAF  315 (518)
Q Consensus       238 t~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~--~~~~~  315 (518)
                      +.+..+|.....      ....++++++.++++|+.+++++.+++.+   +..+++.||+||++.+.......  .....
T Consensus       259 ~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  329 (514)
T d1amua_         259 TVITLPPTYVVH------LDPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHS  329 (514)
T ss_dssp             CEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSSCCCSS
T ss_pred             ccccceeeeccc------ccccccccccEEEEecccCCHHHhhhhcc---ceeEEEeeccccCceeeeeccccccccCcc
Confidence            999999976443      24456889999999999999998887765   35799999999998764433322  33456


Q ss_pred             CCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCc
Q 010114          316 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG  394 (518)
Q Consensus       316 ~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g  394 (518)
                      .+.|.+.++..+.+.|+++++++.|+  .|||++ ++.++.+|  +.+...+...+...+..++++||+|||+|++|+||
T Consensus       330 ~~~~~~~~~~~v~~~d~~~~~~~~g~--~GEl~v~~~~~~~gY--~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G  405 (514)
T d1amua_         330 VPIGAPIQNTQIYIVDENLQLKSVGE--AGELCIGGEGLARGY--WKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG  405 (514)
T ss_dssp             CCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEE--TTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred             cccccceeeeeEeeecccceecCCCC--eeEEEEccCcccccc--cccccccceeeEeccccCCCceEEECCEEEECCCC
Confidence            67889999999999999999999999  699999 77666553  34555555566777778899999999999999999


Q ss_pred             eEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHh
Q 010114          395 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS  474 (518)
Q Consensus       395 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~  474 (518)
                      +|++.||.+|+|+++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+++++  .+.+++.+    ++++
T Consensus       406 ~l~i~GR~~d~i~~~G~~i~p~~IE~~l~-~~~~V~~~~V~~~~~~~~g-~~~~a~v~~~~~--~~~~~l~~----~~~~  477 (514)
T d1amua_         406 NIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ-PYLCAYFVSEKH--IPLEQLRQ----FSSE  477 (514)
T ss_dssp             CEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC-EEEEEEEEESSC--CCHHHHHH----HHHH
T ss_pred             cEEEEecccCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-EEEEEEEEcCCC--CCHHHHHH----HHHh
Confidence            99999999999999999999999999997 8999999999999998888 899999988775  34455544    4677


Q ss_pred             ccCCccccceEEEecCCCCCCCchhHHHHHHH
Q 010114          475 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD  506 (518)
Q Consensus       475 ~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~  506 (518)
                      +|++|++|..|+++++||+|++|||+|++||+
T Consensus       478 ~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         478 ELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             HSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred             hCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence            89999999999999999999999999998876

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.2e-65  Score=523.18  Aligned_cols=480  Identities=19%  Similarity=0.203  Sum_probs=382.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++.+++++
T Consensus        51 ~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~  130 (536)
T d1mdba_          51 WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD  130 (536)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred             EcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccc
Confidence            69999999999999999999 99999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ........ ................+...       .......+.++.        ..........++++++++||||||
T Consensus       131 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~~~~~~~~~~d~a~i~~TSGTT  194 (536)
T d1mdba_         131 AYSGFDYR-SLARQVQSKLPTLKNIIVAG-------EAEEFLPLEDLH--------TEPVKLPEVKSSDVAFLQLSGGST  194 (536)
T ss_dssp             EETTEEHH-HHHHHHHHHCTTCCCEEEES-------CCTTSEEGGGCC--------CCCCCCCCCCTTSEEEEEECCCSS
T ss_pred             hhhhhhhh-hhhhhhhhccccccceeeee-------ccccccchhhcc--------cCCcCCCccCccchHHhhhccccc
Confidence            43210000 00000011111111000000       001111222211        111223345678999999999999


Q ss_pred             CCCceEEeccchhHHHhhhccccccCCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcCcc
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  238 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  238 (518)
                      |.||+|++||.++..++......+++.++|++++..|++|.+++.. ++..+..++..++..+..++..+++.+++++++
T Consensus       195 G~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  274 (536)
T d1mdba_         195 GLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVT  274 (536)
T ss_dssp             SSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCS
T ss_pred             ccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccCCCCHHHHHHHHhhhccc
Confidence            9999999999999999988888889999999999999999999764 444444444444445577889999999999999


Q ss_pred             EEEechHHHHHHHhcccCCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcccCCC
Q 010114          239 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF  318 (518)
Q Consensus       239 ~l~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~  318 (518)
                      .+..+|..+..+..........++++|.+++||+++++...+++.+.+ +......|+++|.+..+...........+++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (536)
T d1mdba_         275 ITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQ  353 (536)
T ss_dssp             EEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSCHHHHHHCC
T ss_pred             cccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhcc-CceeeeccccccccccccccccccccccCCc
Confidence            999999999999888777778899999999999999999999998776 5778888888888777666666556667889


Q ss_pred             Ccccc-cccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecCceE
Q 010114          319 STATM-TAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  396 (518)
Q Consensus       319 g~~~~-~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  396 (518)
                      |.|++ +....+.+++|.+++.++  .|||++ ++..+.+|.  .+...+...      ...++||+|||++++++||+|
T Consensus       354 g~p~~~~~~~~v~~~~g~~~~~~~--~Gel~v~g~~~~~gY~--~~~~~~~~~------~~~~~~~~tGD~~~~~~dG~l  423 (536)
T d1mdba_         354 GKPMSPYDESRVWDDHDRDVKPGE--TGHLLTRGPYTIRGYY--KAEEHNAAS------FTEDGFYRTGDIVRLTRDGYI  423 (536)
T ss_dssp             CEESSTTCEEEEECTTSCBCCTTC--CEEEEEECTTSCSSCT--TCHHHHHHH------BCTTSCEEEEEEEEECTTSCE
T ss_pred             ccCCCCcceEEEEcCCCCeecccc--cceeecCCCccccccc--ccccccccc------ccccCccccCccccccCCCce
Confidence            99975 566777779999999999  699999 776666532  122211111      245679999999999999999


Q ss_pred             EEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 010114          397 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  476 (518)
Q Consensus       397 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  476 (518)
                      ++.||.+|++|++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+++++ ..+.+++++.+++   +.|
T Consensus       424 ~~~GR~~d~i~~~G~~i~p~~IE~~l~-~~p~V~~a~vvg~~~~~~g-~~~~a~v~~~~~-~~~~~~l~~~l~~---~~l  497 (536)
T d1mdba_         424 VVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-ERSCVFIIPRDE-APKAAELKAFLRE---RGL  497 (536)
T ss_dssp             EEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESSS-CCCHHHHHHHHHH---TTC
T ss_pred             ecCCCcceEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEEcCCCC-eEEEEEEEECCC-CCCHHHHHHHHHh---cCC
Confidence            999999999999999999999999997 9999999999999988888 889999998765 3466667666442   359


Q ss_pred             CCccccceEEEecCCCCCCCchhHHHHHHHHHhcccc
Q 010114          477 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  513 (518)
Q Consensus       477 ~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~~~~~~  513 (518)
                      ++|++|+.|+++++||+|++|||+|++|++++++++-
T Consensus       498 ~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l~  534 (536)
T d1mdba_         498 AAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL  534 (536)
T ss_dssp             CGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred             CcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999987764

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=3.3e-61  Score=492.12  Aligned_cols=466  Identities=19%  Similarity=0.133  Sum_probs=367.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCceeEecccchhHHHHHHHHHhcCceEEEech
Q 010114            1 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD   79 (518)
Q Consensus         1 ~Ty~el~~~~~~la~~L~~~-v~~g~~V~i~~~~~~e~~v~~lA~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~   79 (518)
                      +||+||.++++++|++|++. +++||+|+++++|+++|++++|||+++|++++|+++.++++++.+++++++++++|++.
T Consensus        30 ~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~  109 (503)
T d3cw9a1          30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV  109 (503)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESS
T ss_pred             EeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeec
Confidence            59999999999999999999 99999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhccCCCCcchhhhhccCCCceeeccccccCCCCCCcccccchhhhhccCCCCCCCCCCCCCCCCCCCEEEEEeccCCC
Q 010114           80 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  159 (518)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT  159 (518)
                      ...       ..............+                 .+.++..................+++++++++||||||
T Consensus       110 ~~~-------~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT  165 (503)
T d3cw9a1         110 GRQ-------VADAIFQSGSGARII-----------------FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT  165 (503)
T ss_dssp             CHH-------HHHHHHHTTCCCEEE-----------------EHHHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSS
T ss_pred             chH-------HHHHHhhhccccccc-----------------cchhhhhhhcccccCCccccccchhhhhhhhccccccc
Confidence            321       111222222222211                 12222222211111122233345678999999999999


Q ss_pred             CCCceEEeccchhHHHhhhcccccc--CCCCcEEEeecCchhhhhhHH-HHHhhhcCcEEEEecCCCChhHHHHHHHHcC
Q 010114          160 GEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAG  236 (518)
Q Consensus       160 G~pK~v~~s~~~~~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  236 (518)
                      |.||+|.++|.++..+.......+.  ....++++..+|+.|..+... .+.+...++.+++.+ ...+..+...+..++
T Consensus       166 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~  244 (503)
T d3cw9a1         166 GLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE-EFRPVDALQLVQQEQ  244 (503)
T ss_dssp             SSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHT
T ss_pred             ccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccccccc-ccChHHhhhhhhhce
Confidence            9999999999999988876655543  456688999999988888765 666666677776655 678899999999999


Q ss_pred             ccEEEechHHHHHHHhccc--CCCCCccchhhhhccCCCCCchhhhHhhhccccCceeccccccccceeEeecCCCCCcc
Q 010114          237 VTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA  314 (518)
Q Consensus       237 ~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~  314 (518)
                      ++.+..+|..+..+.....  .....+++||.+++||++++++...++...+ ...+.+.||++|++..+....... ..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~~~~~~~~-~~  322 (503)
T d3cw9a1         245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMRQPKT-GT  322 (503)
T ss_dssp             CCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEESCSS-SS
T ss_pred             eeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-cccccccccccccceeeeeccccc-cc
Confidence            9999999999888765432  3455678999999999999999999888776 567999999999987766554443 22


Q ss_pred             cCCCCcccccccEEEECCCCCCCCCCCCeeeeeee-cccccCCccccccccccceeeeCCCCCCCceeccccceEEEecC
Q 010114          315 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  393 (518)
Q Consensus       315 ~~~~g~~~~~~~~~i~~~~g~~~~~~~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  393 (518)
                      ....+.+.+.....+.+..++.++.|+  .|++.+ +......+ ++.+...+...+       .++||+|||+|++++|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~g~--~g~~~~~~~~~~~~~-~~~~~~~t~~~~-------~~g~~~TgD~g~~~~d  392 (503)
T d3cw9a1         323 EMAPGFFSEVRIVRIGGGVDEIVANGE--EGELIVAASDSAFVG-YLNQPQATAEKL-------QDGWYRTSDVAVWTPE  392 (503)
T ss_dssp             EEBCCTTCCEEEECTTSCTTCBCCTTC--CEEEEEECCTTSCCC-BTTCHHHHHHHE-------ETTEEEEEEEEEECTT
T ss_pred             cccccccccceeeeeecccCcccCCCc--ccccccccccccccc-ccCChhhhHHHh-------cCCceecccccccccC
Confidence            334444555555666678889999999  488777 43333322 233333233233       2469999999999999


Q ss_pred             ceEEEeeccCCeeeeCceecchhHHHHHHhhcCcccceeeEEEeCCCCCCccEEEEEEEecCCCCCChhHHHHHHHHHHH
Q 010114          394 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  473 (518)
Q Consensus       394 g~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~vv~~~~~~~g~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  473 (518)
                      |.|+++||.+|+||++|++|+|.+||++|. +||+|.+++|++.+++..| +.++++|+++++...+.+++.++++   +
T Consensus       393 G~l~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~~~g-~~~~a~v~~~~~~~~~~~~l~~~~~---~  467 (503)
T d3cw9a1         393 GTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLADQRWG-QSVTACVVPRLGETLSADALDTFCR---S  467 (503)
T ss_dssp             SCEEEEEESSCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHHHH---H
T ss_pred             CeEEeCCCcCCeEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-eEEEEEEEeCCCCCCCHHHHHHHHH---h
Confidence            999999999999999999999999999997 8999999999999988888 8999999999887777777777643   3


Q ss_pred             hccCCccccceEEEecCCCCCCCchhHHHHHHHHH
Q 010114          474 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI  508 (518)
Q Consensus       474 ~~l~~~~~p~~i~~v~~~P~t~~GKv~R~~l~~~~  508 (518)
                      ++|++|++|..|+++++||+|++|||+|++|++++
T Consensus       468 ~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         468 SELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             SSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred             cCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence            68999999999999999999999999999999875

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=86.67  E-value=3.5  Score=38.80  Aligned_cols=103  Identities=16%  Similarity=0.003  Sum_probs=75.8

Q ss_pred             CCCCEEEEEeccCCCCCCceEEeccchhHHHhh---hccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114          145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG  221 (518)
Q Consensus       145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~  221 (518)
                      .+|.++++...+|.     .-.+|...+...+.   ......++.++|++...++.+.. ....+++++..|+..+.+++
T Consensus        24 ~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~~   97 (534)
T d1v25a_          24 FGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTANP   97 (534)
T ss_dssp             STTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred             cCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHH-HHHHHHHHHHhCcEEEecCC
Confidence            35778766655432     22356666655443   33445678999999888886543 33458899999999999998


Q ss_pred             CCChhHHHHHHHHcCccEEEechHHHHHHHhc
Q 010114          222 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT  253 (518)
Q Consensus       222 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~  253 (518)
                      ....+++...+++.++..++........+...
T Consensus        98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~  129 (534)
T d1v25a_          98 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI  129 (534)
T ss_dssp             TSCHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred             CCCHHHHHHHHHhhccccccccchhhhhHHHH
Confidence            88889999999999999999988877766543

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=84.27  E-value=0.79  Score=43.59  Aligned_cols=87  Identities=10%  Similarity=-0.029  Sum_probs=67.4

Q ss_pred             EEeccchhHHHhhh---ccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecCCCChhHHHHHHHHcCccEEE
Q 010114          165 IPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG  241 (518)
Q Consensus       165 v~~s~~~~~~~~~~---~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~  241 (518)
                      ..+|...+...+..   .....++.++|++...++-+. -....+++++..|+..+.+.+.....++...+++.++..++
T Consensus        46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~-e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi  124 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF  124 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS-STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred             eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEe
Confidence            34677776655543   334467899999988877653 23445889999999999998888889999999999999999


Q ss_pred             echHHHHHHHh
Q 010114          242 TVPSLVKAWRN  252 (518)
Q Consensus       242 ~~P~~~~~l~~  252 (518)
                      .....+..+.+
T Consensus       125 ~~~~~~~~~~~  135 (541)
T d1lcia_         125 VSKKGLQKILN  135 (541)
T ss_dssp             ECGGGHHHHHH
T ss_pred             eeccccccchh
Confidence            99988776654

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=80.28  E-value=2.5  Score=41.12  Aligned_cols=96  Identities=16%  Similarity=0.069  Sum_probs=70.0

Q ss_pred             CCCCEEEEEeccCCCCCCceEEeccchhHHHhh---hccccccCCCCcEEEeecCchhhhhhHHHHHhhhcCcEEEEecC
Q 010114          145 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG  221 (518)
Q Consensus       145 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~  221 (518)
                      .+|.+|++.. +..+|..+  .+|...+...+.   ......++.++|++...+|.+..+ ...+++++..|+..+.+++
T Consensus        85 ~~d~~Ali~~-~~~~~~~~--~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~-iv~~lA~~~~Gav~v~l~~  160 (643)
T d1pg4a_          85 NGDRTAIIWE-GDDTSQSK--HISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG  160 (643)
T ss_dssp             HTTSEEEEEE-CSSTTCEE--EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred             CCCCEEEEEE-ecCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHH-HHHHHHHHHhCeEEEecCC
Confidence            3577877654 33334333  466666655444   334456899999999999875443 3458889999999999998


Q ss_pred             CCChhHHHHHHHHcCccEEEech
Q 010114          222 SPLERSFGKFVQDAGVTVLGTVP  244 (518)
Q Consensus       222 ~~~~~~~~~~i~~~~~t~l~~~P  244 (518)
                      ...+..+...+++.++..++...
T Consensus       161 ~~~~~~l~~~l~~~~~~~li~~~  183 (643)
T d1pg4a_         161 GFSPEAVAGCIIDSSSRLVITAD  183 (643)
T ss_dssp             TSCHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCHHHHHHHHHhcCCCEEEEcc
Confidence            88999999999999999988653